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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5996). All of your documentation changes will be reflected on that endpoint.",
"<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>Show updated benchmarks!</summary>\n\n### Benchmark: benchma... | 2023-06-28T16:26:38 | 2023-06-28T16:32:26 | null | CONTRIBUTOR | null | true | {
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"_The documentation is not available anymore as the PR was closed or merged._",
"<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>Show updated benchmarks!</summary>\n\n### Benchmark: benchmark_array_xd.json\n\n| metric | read_batch_formatted_as_numpy after write_array2d | rea... | 2023-06-27T14:15:08 | 2023-06-28T13:56:02 | 2023-06-28T13:46:33 | CONTRIBUTOR | null | false | {
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} | Allow returning Pandas DataFrames in `map` transforms.
(Plus, raise an error in the non-batched mode if a returned PyArrow table/Pandas DataFrame has more than one row)
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"<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>Show updated benchmarks!</summary>\n\n### Benchmark: benchmark_array_xd.json\n\n| metric | read_batch_formatted_as_numpy after write_array2d | read_batch_formatted_as_numpy after write_flattened_sequence | read_batch_formatted_a... | 2023-06-27T12:32:46 | 2023-06-27T15:40:47 | 2023-06-27T15:32:43 | MEMBER | null | false | {
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} | Fix the order of the columns in dataset.features when the order changes with `dataset.select_columns()`.
I also fixed the same issue for `dataset.flatten()`
Close https://github.com/huggingface/datasets/issues/5993 | {
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"We'll do a new release of `datasets` soon to make the fix available :)\r\n\r\nIn the meantime you can use `datasets` from source (main)",
"Thank you very much @lhoestq ! 🚀 "
] | 2023-06-27T10:54:07 | 2023-06-27T15:36:42 | 2023-06-27T15:32:44 | NONE | null | null | null | ### Describe the bug
Saving a dataset as parquet fails with a `ValueError: Table schema does not match schema used to create file` if the dataset was obtained out of a `.select_columns()` call with columns selected out of order.
### Steps to reproduce the bug
```python
import datasets
dataset = datasets.Dataset.from_dict(
{
"x1": [1, 2, 3],
"x2": [10, 11, 12],
}
)
ds = dataset.select_columns(["x2", "x1"])
ds.to_parquet("demo.parquet")
```
```shell
>>>
ValueError: Table schema does not match schema used to create file:
table:
x2: int64
x1: int64
-- schema metadata --
huggingface: '{"info": {"features": {"x2": {"dtype": "int64", "_type": "V' + 53 vs.
file:
x1: int64
x2: int64
-- schema metadata --
huggingface: '{"info": {"features": {"x1": {"dtype": "int64", "_type": "V' + 53
```
---
I think this is because after the `.select_columns()` call with out of order columns, the output dataset features' schema ends up being out of sync with the schema of the arrow table backing it.
```python
ds.features.arrow_schema
>>>
x1: int64
x2: int64
-- schema metadata --
huggingface: '{"info": {"features": {"x1": {"dtype": "int64", "_type": "V' + 53
ds.data.schema
>>>
x2: int64
x1: int64
-- schema metadata --
huggingface: '{"info": {"features": {"x2": {"dtype": "int64", "_type": "V' + 53
```
So when we call `.to_parquet()`, the call behind the scenes to `datasets.io.parquet.ParquetDatasetWriter(...).write()` which initialises the backend `pyarrow.parquet.ParquetWriter` with `schema = self.dataset.features.arrow_schema` triggers `pyarrow` on write when [it checks](https://github.com/apache/arrow/blob/11b140a734a516e436adaddaeb35d23f30dcce44/python/pyarrow/parquet/core.py#L1086-L1090) that the `ParquetWriter` schema matches the schema of the table being written 🙌
https://github.com/huggingface/datasets/blob/6ed837325cb539a5deb99129e5ad181d0269e050/src/datasets/io/parquet.py#L139-L141
### Expected behavior
The dataset gets successfully saved as parquet.
*In the same way as it does if saving it as csv:
```python
import datasets
dataset = datasets.Dataset.from_dict(
{
"x1": [1, 2, 3],
"x2": [10, 11, 12],
}
)
ds = dataset.select_columns(["x2", "x1"])
ds.to_csv("demo.csv")
```
### Environment info
`python==3.11`
`datasets==2.13.1`
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5992). All of your documentation changes will be reflected on that endpoint."
] | 2023-06-27T09:17:58 | 2023-06-27T09:23:07 | 2023-06-27T09:18:04 | CONTRIBUTOR | null | true | {
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] | open | false | null | [] | null | [] | 2023-06-26T10:33:42 | 2023-06-26T10:33:42 | null | MEMBER | null | null | null | We recently enabled the (experimental) parallel backend switch for data download and extraction but not for `map` yet.
Right now we're using our `iflatmap_unordered` implementation for multiprocessing that uses a shared Queue to gather progress updates from the subprocesses and show a progress bar in the main process.
If a Queue implementation that would work on any joblib backend by leveraging the filesystem that is shared among workers, we can have `iflatmap_unordered` for joblib and therefore a `map` with any joblib backend with a progress bar !
Note that the Queue doesn't need to be that optimized though since we can choose a small frequency for progress updates (like 1 update per second). | {
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"in this case we need to decide what to do with the existing datasets with white space characters (there shouldn't be a lot of them I think)",
"I imagine that we should stop supporting them, and help the user fix them?"
] | 2023-06-26T07:34:14 | 2023-06-26T13:12:58 | null | CONTRIBUTOR | null | null | null | > should we actually allow characters like spaces? maybe it's better to add validation for whitespace symbols and directly in datasets and raise
https://github.com/huggingface/datasets-server/issues/853
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https://api.github.com/repos/huggingface/datasets/issues/5988 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5988/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5988/comments | https://api.github.com/repos/huggingface/datasets/issues/5988/events | https://github.com/huggingface/datasets/issues/5988 | 1,773,257,828 | I_kwDODunzps5pscRk | 5,988 | ConnectionError: Couldn't reach dataset_infos.json | {
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"Unfortunately, I can't reproduce the error. What does the following code return for you?\r\n```python\r\nimport requests\r\nfrom huggingface_hub import hf_hub_url\r\nr = requests.get(hf_hub_url(\"codeparrot/codeparrot-clean-train\", \"dataset_infos.json\", repo_type=\"dataset\"))\r\n```\r\n\r\nAlso, can you provid... | 2023-06-25T12:39:31 | 2023-06-27T12:38:34 | null | NONE | null | null | null | ### Describe the bug
I'm trying to load codeparrot/codeparrot-clean-train, but get the following error:
ConnectionError: Couldn't reach https://huggingface.co/datasets/codeparrot/codeparrot-clean-train/resolve/main/dataset_infos.json (ConnectionError(ProtocolError('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))))
### Steps to reproduce the bug
train_data = load_dataset('codeparrot/codeparrot-clean-train', split='train')
### Expected behavior
download the dataset
### Environment info
centos7 | {
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"Can you explain your use case for `max_shard_size`? \r\n\r\nOn some systems, there is a limit to the size of a memory-mapped file, so we could consider exposing this parameter in `load_dataset`.",
"In my use case, users may choose a proper size to balance the cost and benefit of using large shard size. (On azure... | 2023-06-25T04:19:13 | 2023-06-27T01:59:37 | null | NONE | null | null | null | ### Describe the bug
https://github.com/huggingface/datasets/blob/a8a797cc92e860c8d0df71e0aa826f4d2690713e/src/datasets/load.py#L1809
What I can to is break the `load_dataset` and use `load_datset_builder` + `download_and_prepare` instead.
### Steps to reproduce the bug
https://github.com/huggingface/datasets/blob/a8a797cc92e860c8d0df71e0aa826f4d2690713e/src/datasets/load.py#L1809
### Expected behavior
Users can define the max shard size.
### Environment info
datasets==2.13.1 | {
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"This is a known issue: https://github.com/huggingface/datasets/issues/3847.\r\n\r\nFixing this requires significant work - rewriting the `tokenizers` lib to make them immutable.\r\n\r\nThe current solution is to pass `cache_file_name` to `map` to use that file for caching or calling a tokenizer before `map` (with ... | 2023-06-23T14:45:31 | 2023-06-26T12:34:50 | null | NONE | null | null | null | ### Describe the bug
Related to https://github.com/huggingface/transformers/issues/24441. Not sure if this is a tokenizer issue or caching issue, so filing in both.
Passing the tokenizer to the dataset map function causes the tokenizer to be fingerprinted weirdly. After calling the tokenizer with arguments like padding and truncation the tokenizer object changes interanally, even though the hash remains the same.
But dumps is able to detect that internal change which causes the tokenizer object's fingerprint to change.
### Steps to reproduce the bug
```python
from transformers import AutoTokenizer
from datasets.utils.py_utils import dumps # Huggingface datasets
t = AutoTokenizer.from_pretrained('bert-base-uncased')
t.save_pretrained("tok1")
th1 = hash(dumps(t))
text = "This is an example text"
ttext = t(text, max_length=512, padding="max_length", truncation=True)
t.save_pretrained("tok2")
th2 = hash(dumps(t))
assert th1 == th2 # Assertion Error
```
But if you use just the hash of the object without dumps, the hashes don't change
```python
from transformers import AutoTokenizer
from datasets.utils.py_utils import dumps # Huggingface datasets
t = AutoTokenizer.from_pretrained('bert-base-uncased')
th1 = hash(t) # Just hash no dumps
text = "This is an example text"
ttext = t(text, max_length=512, padding="max_length", truncation=True)
th2 = hash(t) # Just hash no dumps
assert th1 == th2 # This is OK
```
This causes situations such as the following
1. Create a text file like this `yes "This is an example text" | head -n 10000 > lines.txt`
```python
from transformers import AutoTokenizer
import datasets
class TokenizeMapper(object):
"""Mapper for tokenizer.
This is needed because the caching mechanism of HuggingFace does not work on
lambdas. Each time a new lambda will be created by a new process which will
lead to a different hash.
This way we can have a universal mapper object in init and reuse it with the same
hash for each process.
"""
def __init__(self, tokenizer):
"""Initialize the tokenizer."""
self.tokenizer = tokenizer
def __call__(self, examples, **kwargs):
"""Run the mapper."""
texts = examples["text"]
tt = self.tokenizer(texts, max_length=256, padding="max_length", truncation=True)
batch_outputs = {
"input_ids": tt.input_ids,
"attention_mask": tt.attention_mask,
}
return batch_outputs
t = AutoTokenizer.from_pretrained('bert-base-uncased')
mapper = TokenizeMapper(t)
ds = datasets.load_dataset("text", data_files="lines.txt")
mds1 = ds.map(
mapper,
batched=False,
remove_columns=["text"],
).with_format("torch")
mds2 = ds.map(
mapper,
batched=False,
remove_columns=["text"],
).with_format("torch")
```
The second call to map should reuse the cached processed dataset from mds1, but it instead it redoes the tokenization because of the behavior of dumps.
### Expected behavior
We should be able to initialize a tokenizer. And reusing it should let us reuse the same map computation for the same dataset.
The second call to map should reuse the cached processed dataset from mds1, but it instead it redoes the tokenization because of the behavior of dumps.
### Environment info
- `datasets` version: 2.13.0
- Platform: Linux-6.1.31_1-x86_64-with-glibc2.36
- Python version: 3.9.16
- Huggingface_hub version: 0.15.1
- PyArrow version: 12.0.1
- Pandas version: 2.0.2 | {
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"For this to be possible, we would have to switch from the \"Streaming\" Arrow format to the \"Random Access\" (IPC/Feather) format, which allows reading arbitrary record batches (explained [here](https://arrow.apache.org/docs/python/ipc.html)). We could then use these batches to construct shards.\r\n\r\n@lhoestq @... | 2023-06-23T14:34:20 | 2023-06-27T12:42:17 | null | NONE | null | null | null | ### Feature request
Minimal Example
```
import torch
from datasets import IterableDataset
d = IterableDataset.from_file(<file_name>)
dl = torch.utils.data.dataloader.DataLoader(d,num_workers=3)
for sample in dl:
print(sample)
```
Warning:
Too many dataloader workers: 2 (max is dataset.n_shards=1). Stopping 1 dataloader workers.
To parallelize data loading, we give each process some shards (or data sources) to process. Therefore it's unnecessary to have a number of workers greater than dataset.n_shards=1. To enable more parallelism, please split the dataset in more files than 1.
Expected Behavior:
Dataset is sharded each cpu uses subset (contiguously - so you can do checkpoint loading/saving)
### Motivation
I have a lot of unused cpu's and would like to be able to shard iterable datasets with pytorch's dataloader when num_workers > 1. This is for a very large single file. I am aware that we can use the `split_dataset_by_node` to ensure that each node (for distributed) gets different shards, but we should extend it so that this also continues for multiple workers.
### Your contribution
If someone points me to what needs to change, I can create a PR. | {
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"This wasn’t working for me a bit earlier, but it looks to be back up now",
"We had a minor issue updating the docs after the latest release. It should work now :)."
] | 2023-06-22T20:14:57 | 2023-06-26T15:45:03 | 2023-06-26T15:45:03 | NONE | null | null | null | ### Describe the bug
Getting a 404 from the Hugging Face Datasets docs page:
https://huggingface.co/docs/datasets/index
### Steps to reproduce the bug
1. Go to URL https://huggingface.co/docs/datasets/index
2. Notice 404 not found
### Expected behavior
URL should either show docs or redirect to new location
### Environment info
hugginface.co | {
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https://api.github.com/repos/huggingface/datasets/issues/5981 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5981/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5981/comments | https://api.github.com/repos/huggingface/datasets/issues/5981/events | https://github.com/huggingface/datasets/issues/5981 | 1,770,310,087 | I_kwDODunzps5phMnH | 5,981 | Only two cores are getting used in sagemaker with pytorch 3.10 kernel | {
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"I think it's more likely that this issue is related to PyTorch than Datasets, as PyTorch (on import) registers functions to execute when forking a process. Maybe this is the culprit: https://github.com/pytorch/pytorch/issues/99625",
"From reading that ticket, it may be down in mkl? Is it worth hotfixing in the ... | 2023-06-22T19:57:31 | 2023-06-26T19:53:47 | null | NONE | null | null | null | ### Describe the bug
When using the newer pytorch 3.10 kernel, only 2 cores are being used by huggingface filter and map functions. The Pytorch 3.9 kernel would use as many cores as specified in the num_proc field.
We have solved this in our own code by placing the following snippet in the code that is called inside subprocesses:
```os.sched_setaffinity(0, {i for i in range(1000)})```
The problem, as near as we can tell, us that once upon a time, cpu affinity was set using a bitmask ("0xfffff" and the like), and affinity recently changed to a list of processors rather than to using the mask. As such, only processors 1 and 17 are shown to be working in htop.
When running functions via `map`, the above resetting of affinity works to spread across the cores. When using `filter`, however, only two cores are active.
### Steps to reproduce the bug
Repro steps:
1. Create an aws sagemaker instance
2. use the pytorch 3_10 kernel
3. Load a dataset
4. run a filter operation
5. watch as only 2 cores are used when num_proc > 2
6. run a map operation
7. watch as only 2 cores are used when num_proc > 2
8. run a map operation with processor affinity reset inside the function called via map
9. Watch as all cores run
### Expected behavior
All specified cores are used via the num_proc argument.
### Environment info
AWS sagemaker with the following init script run in the terminal after instance creation:
conda init bash
bash
conda activate pytorch_p310
pip install Wand PyPDF pytesseract datasets seqeval pdfplumber transformers pymupdf sentencepiece timm donut-python accelerate optimum xgboost
python -m pip install 'git+https://github.com/facebookresearch/detectron2.git'
sudo yum -y install htop
sudo yum -y update
sudo yum -y install wget libstdc++ autoconf automake libtool autoconf-archive pkg-config gcc gcc-c++ make libjpeg-devel libpng-devel libtiff-devel zlib-devel | {
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https://api.github.com/repos/huggingface/datasets/issues/5980 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5980/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5980/comments | https://api.github.com/repos/huggingface/datasets/issues/5980/events | https://github.com/huggingface/datasets/issues/5980 | 1,770,255,973 | I_kwDODunzps5pg_Zl | 5,980 | Viewing dataset card returns “502 Bad Gateway” | {
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"Can you try again? Maybe there was a minor outage.",
"Yes, it seems to be working now. In case it's helpful, the outage lasted several days. It was failing as late as yesterday morning. ",
"we fixed something on the server side, glad it's fixed now"
] | 2023-06-22T19:14:48 | 2023-06-27T08:38:19 | 2023-06-26T14:42:45 | NONE | null | null | null | The url is: https://huggingface.co/datasets/Confirm-Labs/pile_ngrams_trigrams
I am able to successfully view the “Files and versions” tab: [Confirm-Labs/pile_ngrams_trigrams at main](https://huggingface.co/datasets/Confirm-Labs/pile_ngrams_trigrams/tree/main)
Any help would be appreciated! Thanks! I hope this is the right place to report an issue like this.
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https://api.github.com/repos/huggingface/datasets/issues/5979 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5979/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5979/comments | https://api.github.com/repos/huggingface/datasets/issues/5979/events | https://github.com/huggingface/datasets/pull/5979 | 1,770,198,250 | PR_kwDODunzps5TrxS_ | 5,979 | set dev version | {
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5979). All of your documentation changes will be reflected on that endpoint.",
"<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>Show updated benchmarks!</summary>\n\n### Benchmark: benchma... | 2023-06-22T18:32:14 | 2023-06-22T18:42:22 | 2023-06-22T18:32:22 | MEMBER | null | false | {
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https://api.github.com/repos/huggingface/datasets/issues/5978 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5978/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5978/comments | https://api.github.com/repos/huggingface/datasets/issues/5978/events | https://github.com/huggingface/datasets/pull/5978 | 1,770,187,053 | PR_kwDODunzps5Tru2_ | 5,978 | Release: 2.13.1 | {
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"_The documentation is not available anymore as the PR was closed or merged._",
"<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>Show updated benchmarks!</summary>\n\n### Benchmark: benchmark_array_xd.json\n\n| metric | read_batch_formatted_as_numpy after write_array2d | rea... | 2023-06-22T18:23:11 | 2023-06-22T18:40:24 | 2023-06-22T18:30:16 | MEMBER | null | false | {
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https://api.github.com/repos/huggingface/datasets/issues/5976 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5976/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5976/comments | https://api.github.com/repos/huggingface/datasets/issues/5976/events | https://github.com/huggingface/datasets/pull/5976 | 1,768,503,913 | PR_kwDODunzps5TmAFp | 5,976 | Avoid stuck map operation when subprocesses crashes | {
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"Hi ! Do you think this can be fixed at the Pool level ? Ideally it should be the Pool responsibility to handle this, not the `map` code. We could even subclass Pool if needed (at least the one from `multiprocess`)",
"@lhoestq it makes sense to me. Just pushed a refactoring creating a `class ProcessPool(multiproc... | 2023-06-21T21:18:31 | 2023-06-26T12:27:27 | null | NONE | null | false | {
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} | I've been using Dataset.map() with `num_proc=os.cpu_count()` to leverage multicore processing for my datasets, but from time to time I get stuck processes waiting forever. Apparently, when one of the subprocesses is abruptly killed (OOM killer, segfault, SIGKILL, etc), the main process keeps waiting for the async task sent to that child process to finish.
It seems to be easy to reproduce the issue with the following script:
```
import os
from datasets import Dataset, Features, Value
def do_stuck(item):
os.kill(os.getpid(), 9)
data = {
"col1": list(range(5)),
"col2": list(range(5)),
}
ds = Dataset.from_dict(
data,
features=Features({
"col1": Value("int64"),
"col2": Value("int64"),
}),
)
print(ds.map(do_stuck, num_proc=4))
```
This is an old behavior in Python, which apparently was fixed a few years ago in `concurrent.futures.ProcessPoolExecutor` ([ref](https://bugs.python.org/issue9205)), but not in `multiprocessing.pool.Pool` / `multiprocess.pool.Pool`, which is used by `Dataset.map` ([ref](https://bugs.python.org/issue22393)).
This PR is an idea to try to detect when a child process gets killed, and raises a `RuntimeError` warning the dataset.map() caller.
EDIT: Related proposal for future improvement: https://github.com/huggingface/datasets/discussions/5977 | {
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https://api.github.com/repos/huggingface/datasets/issues/5975 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/5975/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/5975/comments | https://api.github.com/repos/huggingface/datasets/issues/5975/events | https://github.com/huggingface/datasets/issues/5975 | 1,768,271,343 | I_kwDODunzps5pZa3v | 5,975 | Streaming Dataset behind Proxy - FileNotFoundError | {
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"Duplicate of #",
"Hi ! can you try to set the upper case environment variables `HTTP_PROXY` and `HTTPS_PROXY` ?\r\n\r\nWe use `aiohttp` for streaming and it uses case sensitive environment variables",
"Hi, thanks for the quick reply.\r\n\r\nI set the uppercase env variables with\r\n\r\n`\r\nos.environ['HTTP_PR... | 2023-06-21T19:10:02 | 2023-06-26T14:21:32 | null | NONE | null | null | null | ### Describe the bug
When trying to stream a dataset i get the following error after a few minutes of waiting.
```
FileNotFoundError: https://huggingface.co/datasets/facebook/voxpopuli/resolve/main/data/n_files.json
If the repo is private or gated, make sure to log in with `huggingface-cli login`.
```
I have already set the proxy environment variables. Downloading a Dataset without streaming works as expected.
Still i suspect that this is connected to being behind a proxy.
Is there a way to set the proxy for streaming datasets? Possibly a keyword argument that gets passed to ffspec?
### Steps to reproduce the bug
This is the code i use.
```
import os
os.environ['http_proxy'] = "http://example.com:xxxx"
os.environ['https_proxy'] = "http://example.com:xxxx"
from datasets import load_dataset
ds = load_dataset("facebook/voxpopuli", name="de", streaming=True)
```
### Expected behavior
I would expect the streaming functionality to use the set proxy settings.
### Environment info
- `datasets` version: 2.13.0
- Platform: Linux-5.15.0-73-generic-x86_64-with-glibc2.35
- Python version: 3.10.11
- Huggingface_hub version: 0.15.1
- PyArrow version: 11.0.0
- Pandas version: 2.0.2
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