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mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/ibert/__init__.py
|
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_ibert": ["IBERT_PRETRAINED_CONFIG_ARCHIVE_MAP", "IBertConfig", "IBertOnnxConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_ibert"] = [
"IBERT_PRETRAINED_MODEL_ARCHIVE_LIST",
"IBertForMaskedLM",
"IBertForMultipleChoice",
"IBertForQuestionAnswering",
"IBertForSequenceClassification",
"IBertForTokenClassification",
"IBertModel",
"IBertPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_ibert import IBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, IBertConfig, IBertOnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_ibert import (
IBERT_PRETRAINED_MODEL_ARCHIVE_LIST,
IBertForMaskedLM,
IBertForMultipleChoice,
IBertForQuestionAnswering,
IBertForSequenceClassification,
IBertForTokenClassification,
IBertModel,
IBertPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/ibert/modeling_ibert.py
|
# coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch I-BERT model."""
import math
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import gelu
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_ibert import IBertConfig
from .quant_modules import IntGELU, IntLayerNorm, IntSoftmax, QuantAct, QuantEmbedding, QuantLinear
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "kssteven/ibert-roberta-base"
_CONFIG_FOR_DOC = "IBertConfig"
from ..deprecated._archive_maps import IBERT_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
class IBertEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.embedding_bit = 8
self.embedding_act_bit = 16
self.act_bit = 8
self.ln_input_bit = 22
self.ln_output_bit = 32
self.word_embeddings = QuantEmbedding(
config.vocab_size,
config.hidden_size,
padding_idx=config.pad_token_id,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
self.token_type_embeddings = QuantEmbedding(
config.type_vocab_size, config.hidden_size, weight_bit=self.embedding_bit, quant_mode=self.quant_mode
)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = QuantEmbedding(
config.max_position_embeddings,
config.hidden_size,
padding_idx=self.padding_idx,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
# Integer-only addition between embeddings
self.embeddings_act1 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
self.embeddings_act2 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(
input_ids, self.padding_idx, past_key_values_length
).to(input_ids.device)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds, inputs_embeds_scaling_factor = self.word_embeddings(input_ids)
else:
inputs_embeds_scaling_factor = None
token_type_embeddings, token_type_embeddings_scaling_factor = self.token_type_embeddings(token_type_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
inputs_embeds,
inputs_embeds_scaling_factor,
identity=token_type_embeddings,
identity_scaling_factor=token_type_embeddings_scaling_factor,
)
if self.position_embedding_type == "absolute":
position_embeddings, position_embeddings_scaling_factor = self.position_embeddings(position_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
embeddings,
embeddings_scaling_factor,
identity=position_embeddings,
identity_scaling_factor=position_embeddings_scaling_factor,
)
embeddings, embeddings_scaling_factor = self.LayerNorm(embeddings, embeddings_scaling_factor)
embeddings = self.dropout(embeddings)
embeddings, embeddings_scaling_factor = self.output_activation(embeddings, embeddings_scaling_factor)
return embeddings, embeddings_scaling_factor
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class IBertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.quant_mode = config.quant_mode
self.weight_bit = 8
self.bias_bit = 32
self.act_bit = 8
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
# Q, K, V Linear layers
self.query = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.key = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.value = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
# Requantization (32bit -> 8bit) for Q, K, V activations
self.query_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.key_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.value_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type != "absolute":
raise ValueError("I-BERT only supports 'absolute' for `config.position_embedding_type`")
self.softmax = IntSoftmax(self.act_bit, quant_mode=self.quant_mode, force_dequant=config.force_dequant)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
# Projection
mixed_query_layer, mixed_query_layer_scaling_factor = self.query(hidden_states, hidden_states_scaling_factor)
mixed_key_layer, mixed_key_layer_scaling_factor = self.key(hidden_states, hidden_states_scaling_factor)
mixed_value_layer, mixed_value_layer_scaling_factor = self.value(hidden_states, hidden_states_scaling_factor)
# Requantization
query_layer, query_layer_scaling_factor = self.query_activation(
mixed_query_layer, mixed_query_layer_scaling_factor
)
key_layer, key_layer_scaling_factor = self.key_activation(mixed_key_layer, mixed_key_layer_scaling_factor)
value_layer, value_layer_scaling_factor = self.value_activation(
mixed_value_layer, mixed_value_layer_scaling_factor
)
# Transpose
query_layer = self.transpose_for_scores(query_layer)
key_layer = self.transpose_for_scores(key_layer)
value_layer = self.transpose_for_scores(value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
scale = math.sqrt(self.attention_head_size)
attention_scores = attention_scores / scale
if self.quant_mode:
attention_scores_scaling_factor = query_layer_scaling_factor * key_layer_scaling_factor / scale
else:
attention_scores_scaling_factor = None
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in IBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs, attention_probs_scaling_factor = self.softmax(
attention_scores, attention_scores_scaling_factor
)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
if attention_probs_scaling_factor is not None:
context_layer_scaling_factor = attention_probs_scaling_factor * value_layer_scaling_factor
else:
context_layer_scaling_factor = None
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
# requantization: 32-bit -> 8-bit
context_layer, context_layer_scaling_factor = self.output_activation(
context_layer, context_layer_scaling_factor
)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
output_scaling_factor = (
(context_layer_scaling_factor, attention_probs_scaling_factor)
if output_attentions
else (context_layer_scaling_factor,)
)
return outputs, output_scaling_factor
class IBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.self = IBertSelfAttention(config)
self.output = IBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_outputs, self_outputs_scaling_factor = self.self(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions,
)
attention_output, attention_output_scaling_factor = self.output(
self_outputs[0], self_outputs_scaling_factor[0], hidden_states, hidden_states_scaling_factor
)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
outputs_scaling_factor = (attention_output_scaling_factor,) + self_outputs_scaling_factor[1:]
return outputs, outputs_scaling_factor
class IBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.intermediate_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
if config.hidden_act != "gelu":
raise ValueError("I-BERT only supports 'gelu' for `config.hidden_act`")
self.intermediate_act_fn = IntGELU(quant_mode=self.quant_mode, force_dequant=config.force_dequant)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(self, hidden_states, hidden_states_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.intermediate_act_fn(
hidden_states, hidden_states_scaling_factor
)
# Requantization: 32bit -> 8-bit
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.intermediate_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.seq_len_dim = 1
self.attention = IBertAttention(config)
self.intermediate = IBertIntermediate(config)
self.output = IBertOutput(config)
self.pre_intermediate_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.pre_output_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_attention_outputs, self_attention_outputs_scaling_factor = self.attention(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
attention_output_scaling_factor = self_attention_outputs_scaling_factor[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
layer_output, layer_output_scaling_factor = self.feed_forward_chunk(
attention_output, attention_output_scaling_factor
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output, attention_output_scaling_factor):
attention_output, attention_output_scaling_factor = self.pre_intermediate_act(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.intermediate(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.pre_output_act(
intermediate_output, intermediate_output_scaling_factor
)
layer_output, layer_output_scaling_factor = self.output(
intermediate_output, intermediate_output_scaling_factor, attention_output, attention_output_scaling_factor
)
return layer_output, layer_output_scaling_factor
class IBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.quant_mode = config.quant_mode
self.layer = nn.ModuleList([IBertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = None # `config.add_cross_attention` is not supported
next_decoder_cache = None # `config.use_cache` is not supported
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
layer_outputs = layer_module(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
layer_head_mask,
output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class IBertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class IBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = IBertConfig
base_model_prefix = "ibert"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (QuantLinear, nn.Linear)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, (QuantEmbedding, nn.Embedding)):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, (IntLayerNorm, nn.LayerNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def resize_token_embeddings(self, new_num_tokens=None):
raise NotImplementedError("`resize_token_embeddings` is not supported for I-BERT.")
IBERT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`IBertConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
IBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare I-BERT Model transformer outputting raw hidden-states without any specific head on top.",
IBERT_START_DOCSTRING,
)
class IBertModel(IBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.quant_mode = config.quant_mode
self.embeddings = IBertEmbeddings(config)
self.encoder = IBertEncoder(config)
self.pooler = IBertPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[BaseModelOutputWithPoolingAndCrossAttentions, Tuple[torch.FloatTensor]]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length)), device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output, embedding_output_scaling_factor = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
)
encoder_outputs = self.encoder(
embedding_output,
embedding_output_scaling_factor,
attention_mask=extended_attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings("""I-BERT Model with a `language modeling` head on top.""", IBERT_START_DOCSTRING)
class IBertForMaskedLM(IBertPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.bias", "lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config, add_pooling_layer=False)
self.lm_head = IBertLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MaskedLMOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertLMHead(nn.Module):
"""I-BERT Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
self.decoder.bias = self.bias
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x)
return x
def _tie_weights(self):
# To tie those two weights if they get disconnected (on TPU or when the bias is resized)
self.bias = self.decoder.bias
@add_start_docstrings(
"""
I-BERT Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForSequenceClassification(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.classifier = IBertClassificationHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[SequenceClassifierOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForMultipleChoice(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[MultipleChoiceModelOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
flat_input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
flat_position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
flat_token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
flat_attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
flat_inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.ibert(
flat_input_ids,
position_ids=flat_position_ids,
token_type_ids=flat_token_type_ids,
attention_mask=flat_attention_mask,
head_mask=head_mask,
inputs_embeds=flat_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForTokenClassification(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[TokenClassifierOutput, Tuple[torch.FloatTensor]]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
hidden_states = features[:, 0, :] # take <s> token (equiv. to [CLS])
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
@add_start_docstrings(
"""
I-BERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
IBERT_START_DOCSTRING,
)
class IBertForQuestionAnswering(IBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[QuestionAnsweringModelOutput, Tuple[torch.FloatTensor]]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's *utils.make_positions*.
Args:
input_ids (`torch.LongTensor`):
Indices of input sequence tokens in the vocabulary.
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/ibert/configuration_ibert.py
|
# coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" I-BERT configuration"""
from collections import OrderedDict
from typing import Mapping
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import IBERT_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class IBertConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`IBertModel`]. It is used to instantiate a I-BERT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the IBERT
[kssteven/ibert-roberta-base](https://huggingface.co/kssteven/ibert-roberta-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30522):
Vocabulary size of the I-BERT model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`IBertModel`]
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 2):
The vocabulary size of the `token_type_ids` passed when calling [`IBertModel`]
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query"`. For
positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
quant_mode (`bool`, *optional*, defaults to `False`):
Whether to quantize the model or not.
force_dequant (`str`, *optional*, defaults to `"none"`):
Force dequantize specific nonlinear layer. Dequatized layers are then executed with full precision.
`"none"`, `"gelu"`, `"softmax"`, `"layernorm"` and `"nonlinear"` are supported. As deafult, it is set as
`"none"`, which does not dequantize any layers. Please specify `"gelu"`, `"softmax"`, or `"layernorm"` to
dequantize GELU, Softmax, or LayerNorm, respectively. `"nonlinear"` will dequantize all nonlinear layers,
i.e., GELU, Softmax, and LayerNorm.
"""
model_type = "ibert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
position_embedding_type="absolute",
quant_mode=False,
force_dequant="none",
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.quant_mode = quant_mode
self.force_dequant = force_dequant
class IBertOnnxConfig(OnnxConfig):
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
if self.task == "multiple-choice":
dynamic_axis = {0: "batch", 1: "choice", 2: "sequence"}
else:
dynamic_axis = {0: "batch", 1: "sequence"}
return OrderedDict(
[
("input_ids", dynamic_axis),
("attention_mask", dynamic_axis),
]
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/gptj/configuration_gptj.py
|
# coding=utf-8
# Copyright 2021 The EleutherAI and HuggingFace Teams. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" GPT-J model configuration"""
from collections import OrderedDict
from typing import Any, List, Mapping, Optional
from ... import PreTrainedTokenizer, TensorType, is_torch_available
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfigWithPast, PatchingSpec
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import GPTJ_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class GPTJConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`GPTJModel`]. It is used to instantiate a GPT-J
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the GPT-J
[EleutherAI/gpt-j-6B](https://huggingface.co/EleutherAI/gpt-j-6B) architecture. Configuration objects inherit from
[`PretrainedConfig`] and can be used to control the model outputs. Read the documentation from [`PretrainedConfig`]
for more information.
Args:
vocab_size (`int`, *optional*, defaults to 50400):
Vocabulary size of the GPT-J model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`GPTJModel`].
n_positions (`int`, *optional*, defaults to 2048):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
n_embd (`int`, *optional*, defaults to 4096):
Dimensionality of the embeddings and hidden states.
n_layer (`int`, *optional*, defaults to 28):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
rotary_dim (`int`, *optional*, defaults to 64):
Number of dimensions in the embedding that Rotary Position Embedding is applied to.
n_inner (`int`, *optional*, defaults to None):
Dimensionality of the inner feed-forward layers. `None` will set it to 4 times n_embd
activation_function (`str`, *optional*, defaults to `"gelu_new"`):
Activation function, to be selected in the list `["relu", "silu", "gelu", "tanh", "gelu_new"]`.
resid_pdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
embd_pdrop (`int`, *optional*, defaults to 0.1):
The dropout ratio for the embeddings.
attn_pdrop (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-5):
The epsilon to use in the layer normalization layers.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
Example:
```python
>>> from transformers import GPTJModel, GPTJConfig
>>> # Initializing a GPT-J 6B configuration
>>> configuration = GPTJConfig()
>>> # Initializing a model from the configuration
>>> model = GPTJModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "gptj"
attribute_map = {
"max_position_embeddings": "n_positions",
"hidden_size": "n_embd",
"num_attention_heads": "n_head",
"num_hidden_layers": "n_layer",
}
def __init__(
self,
vocab_size=50400,
n_positions=2048,
n_embd=4096,
n_layer=28,
n_head=16,
rotary_dim=64,
n_inner=None,
activation_function="gelu_new",
resid_pdrop=0.0,
embd_pdrop=0.0,
attn_pdrop=0.0,
layer_norm_epsilon=1e-5,
initializer_range=0.02,
use_cache=True,
bos_token_id=50256,
eos_token_id=50256,
tie_word_embeddings=False,
**kwargs,
):
self.vocab_size = vocab_size
self.n_positions = n_positions
self.n_embd = n_embd
self.n_layer = n_layer
self.n_head = n_head
self.n_inner = n_inner
self.rotary_dim = rotary_dim
self.activation_function = activation_function
self.resid_pdrop = resid_pdrop
self.embd_pdrop = embd_pdrop
self.attn_pdrop = attn_pdrop
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.use_cache = use_cache
self.bos_token_id = bos_token_id
self.eos_token_id = eos_token_id
super().__init__(
bos_token_id=bos_token_id, eos_token_id=eos_token_id, tie_word_embeddings=tie_word_embeddings, **kwargs
)
# Copied from transformers.models.gpt2.configuration_gpt2.GPT2OnnxConfig
class GPTJOnnxConfig(OnnxConfigWithPast):
def __init__(
self,
config: PretrainedConfig,
task: str = "default",
patching_specs: List[PatchingSpec] = None,
use_past: bool = False,
):
super().__init__(config, task=task, patching_specs=patching_specs, use_past=use_past)
if not getattr(self._config, "pad_token_id", None):
# TODO: how to do that better?
self._config.pad_token_id = 0
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
common_inputs = OrderedDict({"input_ids": {0: "batch", 1: "sequence"}})
if self.use_past:
self.fill_with_past_key_values_(common_inputs, direction="inputs")
common_inputs["attention_mask"] = {0: "batch", 1: "past_sequence + sequence"}
else:
common_inputs["attention_mask"] = {0: "batch", 1: "sequence"}
return common_inputs
@property
def num_layers(self) -> int:
return self._config.n_layer
@property
def num_attention_heads(self) -> int:
return self._config.n_head
def generate_dummy_inputs(
self,
tokenizer: PreTrainedTokenizer,
batch_size: int = -1,
seq_length: int = -1,
is_pair: bool = False,
framework: Optional[TensorType] = None,
) -> Mapping[str, Any]:
common_inputs = super(OnnxConfigWithPast, self).generate_dummy_inputs(
tokenizer, batch_size=batch_size, seq_length=seq_length, is_pair=is_pair, framework=framework
)
# We need to order the input in the way they appears in the forward()
ordered_inputs = OrderedDict({"input_ids": common_inputs["input_ids"]})
# Need to add the past_keys
if self.use_past:
if not is_torch_available():
raise ValueError("Cannot generate dummy past_keys inputs without PyTorch installed.")
else:
import torch
batch, seqlen = common_inputs["input_ids"].shape
# Not using the same length for past_key_values
past_key_values_length = seqlen + 2
past_shape = (
batch,
self.num_attention_heads,
past_key_values_length,
self._config.hidden_size // self.num_attention_heads,
)
ordered_inputs["past_key_values"] = [
(torch.zeros(past_shape), torch.zeros(past_shape)) for _ in range(self.num_layers)
]
ordered_inputs["attention_mask"] = common_inputs["attention_mask"]
if self.use_past:
mask_dtype = ordered_inputs["attention_mask"].dtype
ordered_inputs["attention_mask"] = torch.cat(
[ordered_inputs["attention_mask"], torch.ones(batch, past_key_values_length, dtype=mask_dtype)], dim=1
)
return ordered_inputs
@property
def default_onnx_opset(self) -> int:
return 13
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/gptj/__init__.py
|
# Copyright 2021 The EleutherAI and HuggingFace Teams. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_flax_available,
is_tf_available,
is_torch_available,
)
_import_structure = {"configuration_gptj": ["GPTJ_PRETRAINED_CONFIG_ARCHIVE_MAP", "GPTJConfig", "GPTJOnnxConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_gptj"] = [
"GPTJ_PRETRAINED_MODEL_ARCHIVE_LIST",
"GPTJForCausalLM",
"GPTJForQuestionAnswering",
"GPTJForSequenceClassification",
"GPTJModel",
"GPTJPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_gptj"] = [
"TFGPTJForCausalLM",
"TFGPTJForQuestionAnswering",
"TFGPTJForSequenceClassification",
"TFGPTJModel",
"TFGPTJPreTrainedModel",
]
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_flax_gptj"] = [
"FlaxGPTJForCausalLM",
"FlaxGPTJModel",
"FlaxGPTJPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_gptj import GPTJ_PRETRAINED_CONFIG_ARCHIVE_MAP, GPTJConfig, GPTJOnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_gptj import (
GPTJ_PRETRAINED_MODEL_ARCHIVE_LIST,
GPTJForCausalLM,
GPTJForQuestionAnswering,
GPTJForSequenceClassification,
GPTJModel,
GPTJPreTrainedModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_gptj import (
TFGPTJForCausalLM,
TFGPTJForQuestionAnswering,
TFGPTJForSequenceClassification,
TFGPTJModel,
TFGPTJPreTrainedModel,
)
try:
if not is_flax_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_flax_gptj import FlaxGPTJForCausalLM, FlaxGPTJModel, FlaxGPTJPreTrainedModel
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/gptj/modeling_flax_gptj.py
|
# coding=utf-8
# Copyright 2021 The EleutherAI and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Optional, Tuple
import flax.linen as nn
import jax
import jax.numpy as jnp
import numpy as np
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import FlaxBaseModelOutput, FlaxCausalLMOutput
from ...modeling_flax_utils import ACT2FN, FlaxPreTrainedModel, append_call_sample_docstring
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_gptj import GPTJConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "gptj"
_CONFIG_FOR_DOC = "GPTJConfig"
GPTJ_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Flax Linen
[flax.nn.Module](https://flax.readthedocs.io/en/latest/_autosummary/flax.nn.module.html) subclass. Use it as a
regular Flax Module and refer to the Flax documentation for all matter related to general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`GPTJConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
GPTJ_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `(batch_size, input_ids_length)`):
`input_ids_length` = `sequence_length`. Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`numpy.ndarray` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
past_key_values (`Dict[str, np.ndarray]`, *optional*, returned by `init_cache` or when passing previous `past_key_values`):
Dictionary of pre-computed hidden-states (key and values in the attention blocks) that can be used for fast
auto-regressive decoding. Pre-computed key and value hidden-states are of shape *[batch_size, max_length]*.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
def create_sinusoidal_positions(num_pos, dim):
inv_freq = 1.0 / (10000 ** (np.arange(0, dim, 2) / dim))
sinusoid_inp = np.einsum("i , j -> i j", np.arange(num_pos), inv_freq).astype("float32")
sin, cos = np.sin(sinusoid_inp), np.cos(sinusoid_inp)
sentinel = dim // 2 + dim % 2
out = np.zeros((num_pos, dim))
out[:, 0:sentinel] = sin
out[:, sentinel:] = cos
return jnp.array(out)
def rotate_every_two(tensor):
rotate_half_tensor = jnp.stack((-tensor[:, :, :, 1::2], tensor[:, :, :, ::2]), axis=-1)
rotate_half_tensor = rotate_half_tensor.reshape(rotate_half_tensor.shape[:-2] + (-1,))
return rotate_half_tensor
def apply_rotary_pos_emb(tensor, sincos):
sin_pos, cos_pos = sincos
sin_pos = sin_pos[:, :, None, :].repeat(2, 3)
cos_pos = cos_pos[:, :, None, :].repeat(2, 3)
return (tensor * cos_pos) + (rotate_every_two(tensor) * sin_pos)
class FlaxGPTJAttention(nn.Module):
config: GPTJConfig
dtype: jnp.dtype = jnp.float32
causal: bool = True
is_cross_attention: bool = False
def setup(self):
config = self.config
self.embed_dim = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_heads
self.rotary_dim = config.rotary_dim
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.resid_dropout = nn.Dropout(rate=config.resid_pdrop)
self.causal_mask = make_causal_mask(jnp.ones((1, config.max_position_embeddings), dtype="bool"), dtype="bool")
pos_embd_dim = self.rotary_dim or self.embed_dim
self.embed_positions = create_sinusoidal_positions(config.max_position_embeddings, pos_embd_dim)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.num_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.embed_dim,))
@nn.compact
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key
# positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states,
attention_mask,
position_ids,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
):
query = self.q_proj(hidden_states)
key = self.k_proj(hidden_states)
value = self.v_proj(hidden_states)
query = self._split_heads(query)
key = self._split_heads(key)
value = self._split_heads(value)
sincos = jnp.take(self.embed_positions, position_ids, axis=0)
sincos = jnp.split(sincos, 2, axis=-1)
if self.rotary_dim is not None:
k_rot = key[:, :, :, : self.rotary_dim]
k_pass = key[:, :, :, self.rotary_dim :]
q_rot = query[:, :, :, : self.rotary_dim]
q_pass = query[:, :, :, self.rotary_dim :]
k_rot = apply_rotary_pos_emb(k_rot, sincos)
q_rot = apply_rotary_pos_emb(q_rot, sincos)
key = jnp.concatenate([k_rot, k_pass], axis=-1)
query = jnp.concatenate([q_rot, q_pass], axis=-1)
else:
key = apply_rotary_pos_emb(key, sincos)
query = apply_rotary_pos_emb(query, sincos)
query_length, key_length = query.shape[1], key.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
batch_size = hidden_states.shape[0]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
dropout_rng = None
if not deterministic and self.config.attn_pdrop > 0.0:
dropout_rng = self.make_rng("dropout")
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.has_variable("cache", "cached_key") or init_cache:
key, value, attention_mask = self._concatenate_to_cache(key, value, query, attention_mask)
# transform boolean mask into float mask
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, jnp.finfo(self.dtype).min).astype(self.dtype),
)
# usual dot product attention
attn_weights = dot_product_attention_weights(
query,
key,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.config.attn_pdrop,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
attn_output = self.resid_dropout(attn_output, deterministic=deterministic)
outputs = (attn_output, attn_weights) if output_attentions else (attn_output,)
return outputs
class FlaxGPTJMLP(nn.Module):
config: GPTJConfig
intermediate_size: int
dtype: jnp.dtype = jnp.float32
def setup(self):
embed_dim = self.config.hidden_size
kernel_init = jax.nn.initializers.normal(self.config.initializer_range)
self.fc_in = nn.Dense(self.intermediate_size, dtype=self.dtype, kernel_init=kernel_init)
self.fc_out = nn.Dense(embed_dim, dtype=self.dtype, kernel_init=kernel_init)
self.act = ACT2FN[self.config.activation_function]
self.dropout = nn.Dropout(rate=self.config.resid_pdrop)
def __call__(self, hidden_states, deterministic: bool = True):
hidden_states = self.fc_in(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.fc_out(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
return hidden_states
class FlaxGPTJBlock(nn.Module):
config: GPTJConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
hidden_size = self.config.hidden_size
inner_dim = self.config.n_inner if self.config.n_inner is not None else 4 * hidden_size
self.ln_1 = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
self.attn = FlaxGPTJAttention(self.config, dtype=self.dtype)
self.mlp = FlaxGPTJMLP(self.config, inner_dim, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask=None,
position_ids=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
):
residual = hidden_states
hidden_states = self.ln_1(hidden_states)
attn_outputs = self.attn(
hidden_states,
attention_mask=attention_mask,
position_ids=position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0]
feed_forward_hidden_states = self.mlp(hidden_states, deterministic=deterministic)
# residual connection
hidden_states = attn_output + feed_forward_hidden_states + residual
return (hidden_states,) + attn_outputs[1:]
class FlaxGPTJPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = GPTJConfig
base_model_prefix = "transformer"
module_class: nn.Module = None
def __init__(
self,
config: GPTJConfig,
input_shape: Tuple = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs,
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
attention_mask = jnp.ones_like(input_ids)
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_shape)
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
if self.config.add_cross_attention:
encoder_hidden_states = jnp.zeros(input_shape + (self.config.n_embd,))
encoder_attention_mask = attention_mask
module_init_outputs = self.module.init(
rngs,
input_ids,
attention_mask,
position_ids,
encoder_hidden_states,
encoder_attention_mask,
return_dict=False,
)
else:
module_init_outputs = self.module.init(rngs, input_ids, attention_mask, position_ids, return_dict=False)
random_params = module_init_outputs["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
def init_cache(self, batch_size, max_length):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
"""
# init input variables to retrieve cache
input_ids = jnp.ones((batch_size, max_length))
attention_mask = jnp.ones_like(input_ids)
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
init_variables = self.module.init(
jax.random.PRNGKey(0), input_ids, attention_mask, position_ids, return_dict=False, init_cache=True
)
return init_variables["cache"]
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING)
def __call__(
self,
input_ids,
attention_mask=None,
position_ids=None,
params: dict = None,
past_key_values: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
batch_size, sequence_length = input_ids.shape
if position_ids is None:
if past_key_values is not None:
raise ValueError("Make sure to provide `position_ids` when passing `past_key_values`.")
position_ids = jnp.broadcast_to(jnp.arange(sequence_length)[None, :], (batch_size, sequence_length))
if attention_mask is None:
attention_mask = jnp.ones((batch_size, sequence_length))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be passed down to ensure cache is used. It has to be made sure that cache is marked as mutable so that it can be changed by FlaxGPTJAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
outputs = self.module.apply(
inputs,
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
jnp.array(position_ids, dtype="i4"),
not train,
False,
output_attentions,
output_hidden_states,
return_dict,
rngs=rngs,
mutable=mutable,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past_key_values = outputs
outputs["past_key_values"] = unfreeze(past_key_values["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past_key_values = outputs
outputs = outputs[:1] + (unfreeze(past_key_values["cache"]),) + outputs[1:]
return outputs
class FlaxGPTJBlockCollection(nn.Module):
config: GPTJConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.blocks = [
FlaxGPTJBlock(self.config, name=str(i), dtype=self.dtype) for i in range(self.config.num_hidden_layers)
]
def __call__(
self,
hidden_states,
attention_mask=None,
position_ids=None,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for block in self.blocks:
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = block(
hidden_states,
attention_mask,
position_ids=position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions += (layer_outputs[1],)
# this contains possible `None` values - `FlaxGPTJModule` will filter them out
outputs = (hidden_states, all_hidden_states, all_attentions)
return outputs
class FlaxGPTJModule(nn.Module):
config: GPTJConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.embed_dim = self.config.hidden_size
self.wte = nn.Embed(
self.config.vocab_size,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.dropout = nn.Dropout(rate=self.config.embd_pdrop)
self.h = FlaxGPTJBlockCollection(self.config, dtype=self.dtype)
self.ln_f = nn.LayerNorm(epsilon=self.config.layer_norm_epsilon, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
deterministic=True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
input_embeds = self.wte(input_ids.astype("i4"))
hidden_states = self.dropout(input_embeds, deterministic=deterministic)
outputs = self.h(
hidden_states,
attention_mask,
position_ids=position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.ln_f(hidden_states)
if output_hidden_states:
all_hidden_states = outputs[1] + (hidden_states,)
outputs = (hidden_states, all_hidden_states) + outputs[2:]
else:
outputs = (hidden_states,) + outputs[1:]
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=outputs[1],
attentions=outputs[-1],
)
@add_start_docstrings(
"The bare GPTJ Model transformer outputting raw hidden-states without any specific head on top.",
GPTJ_START_DOCSTRING,
)
class FlaxGPTJModel(FlaxGPTJPreTrainedModel):
module_class = FlaxGPTJModule
append_call_sample_docstring(
FlaxGPTJModel,
_CHECKPOINT_FOR_DOC,
FlaxCausalLMOutput,
_CONFIG_FOR_DOC,
)
class FlaxGPTJForCausalLMModule(nn.Module):
config: GPTJConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.transformer = FlaxGPTJModule(self.config, dtype=self.dtype)
self.lm_head = nn.Dense(
self.config.vocab_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
deterministic: bool = True,
init_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
outputs = self.transformer(
input_ids,
attention_mask,
position_ids,
deterministic=deterministic,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_kernel = self.transformer.variables["params"]["wte"]["embedding"].T
lm_logits = self.lm_head.apply({"params": {"kernel": shared_kernel}}, hidden_states)
else:
lm_logits = self.lm_head(hidden_states)
if not return_dict:
return (lm_logits,) + outputs[1:]
return FlaxCausalLMOutput(logits=lm_logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions)
@add_start_docstrings(
"""
The GPTJ Model transformer with a language modeling head on top.
""",
GPTJ_START_DOCSTRING,
)
class FlaxGPTJForCausalLM(FlaxGPTJPreTrainedModel):
module_class = FlaxGPTJForCausalLMModule
def prepare_inputs_for_generation(self, input_ids, max_length, attention_mask: Optional[jax.Array] = None):
# initializing the cache
batch_size, seq_length = input_ids.shape
past_key_values = self.init_cache(batch_size, max_length)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since GPTJ uses a causal mask, those positions are masked anyways.
# Thus we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if attention_mask is not None:
position_ids = attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"attention_mask": extended_attention_mask,
"position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["position_ids"] = model_kwargs["position_ids"][:, -1:] + 1
return model_kwargs
append_call_sample_docstring(
FlaxGPTJForCausalLM,
_CHECKPOINT_FOR_DOC,
FlaxCausalLMOutput,
_CONFIG_FOR_DOC,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/gptj/modeling_gptj.py
|
# coding=utf-8
# Copyright 2021 The EleutherAI and HuggingFace Teams. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch GPT-J model."""
import warnings
from typing import Optional, Tuple, Union
import torch
import torch.fx
import torch.nn.functional as F
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPast,
CausalLMOutputWithPast,
QuestionAnsweringModelOutput,
SequenceClassifierOutputWithPast,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_flash_attn_2_available,
is_flash_attn_greater_or_equal_2_10,
is_torch_fx_proxy,
logging,
)
from ...utils.model_parallel_utils import assert_device_map, get_device_map
from .configuration_gptj import GPTJConfig
if is_flash_attn_2_available():
from flash_attn import flash_attn_func, flash_attn_varlen_func
from flash_attn.bert_padding import index_first_axis, pad_input, unpad_input # noqa
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "hf-internal-testing/tiny-random-gptj"
_REAL_CHECKPOINT_FOR_DOC = "EleutherAI/gpt-j-6B"
_CONFIG_FOR_DOC = "GPTJConfig"
from ..deprecated._archive_maps import GPTJ_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Copied from transformers.models.llama.modeling_llama._get_unpad_data
def _get_unpad_data(attention_mask):
seqlens_in_batch = attention_mask.sum(dim=-1, dtype=torch.int32)
indices = torch.nonzero(attention_mask.flatten(), as_tuple=False).flatten()
max_seqlen_in_batch = seqlens_in_batch.max().item()
cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.int32), (1, 0))
return (
indices,
cu_seqlens,
max_seqlen_in_batch,
)
def create_sinusoidal_positions(num_pos: int, dim: int) -> torch.Tensor:
inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2, dtype=torch.int64) / dim))
sinusoid_inp = torch.einsum("i , j -> i j", torch.arange(num_pos, dtype=torch.int64).float(), inv_freq).float()
return torch.cat((torch.sin(sinusoid_inp), torch.cos(sinusoid_inp)), dim=1)
@torch.fx.wrap
def get_embed_positions(embed_positions, position_ids):
return embed_positions.to(position_ids.device).repeat(position_ids.shape[0], 1, 1)
def rotate_every_two(x: torch.Tensor) -> torch.Tensor:
x1 = x[:, :, :, ::2]
x2 = x[:, :, :, 1::2]
x = torch.stack((-x2, x1), dim=-1)
return x.flatten(-2) # in einsum notation: rearrange(x, '... d j -> ... (d j)')
def apply_rotary_pos_emb(tensor: torch.Tensor, sin: torch.Tensor, cos: torch.Tensor) -> torch.Tensor:
sin = torch.repeat_interleave(sin[:, :, None, :], 2, 3)
cos = torch.repeat_interleave(cos[:, :, None, :], 2, 3)
return (tensor * cos) + (rotate_every_two(tensor) * sin)
class GPTJAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
max_positions = config.max_position_embeddings
self.register_buffer(
"bias",
torch.tril(torch.ones((max_positions, max_positions), dtype=torch.bool)).view(
1, 1, max_positions, max_positions
),
persistent=False,
)
self.register_buffer("masked_bias", torch.tensor(-1e9), persistent=False)
self.attn_dropout = nn.Dropout(config.attn_pdrop)
self.resid_dropout = nn.Dropout(config.resid_pdrop)
self.is_causal = True
self.embed_dim = config.hidden_size
self.num_attention_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_attention_heads
if self.head_dim * self.num_attention_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_attention_heads (got `embed_dim`: {self.embed_dim} and"
f" `num_attention_heads`: {self.num_attention_heads})."
)
self.scale_attn = torch.sqrt(torch.tensor(self.head_dim, dtype=torch.float32)).to(torch.get_default_dtype())
self.k_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False)
self.v_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False)
self.q_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False)
self.out_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=False)
self.rotary_dim = config.rotary_dim
pos_embd_dim = self.rotary_dim or self.embed_dim
self.embed_positions = create_sinusoidal_positions(max_positions, pos_embd_dim)
def _split_heads(self, tensor, num_attention_heads, attn_head_size, rotary):
"""
Splits hidden dim into attn_head_size and num_attention_heads
"""
new_shape = tensor.size()[:-1] + (num_attention_heads, attn_head_size)
tensor = tensor.view(new_shape)
if rotary:
return tensor
if len(tensor.shape) == 5:
return tensor.permute(0, 1, 3, 2, 4) # (batch, blocks, head, block_length, head_features)
elif len(tensor.shape) == 4:
return tensor.permute(0, 2, 1, 3) # (batch, head, seq_length, head_features)
else:
raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(tensor.shape)}")
def _merge_heads(self, tensor, num_attention_heads, attn_head_size):
"""
Merges attn_head_size dim and num_attn_heads dim into hidden dim
"""
if len(tensor.shape) == 5:
tensor = tensor.permute(0, 1, 3, 2, 4).contiguous()
elif len(tensor.shape) == 4:
tensor = tensor.permute(0, 2, 1, 3).contiguous()
else:
raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(tensor.shape)}")
new_shape = tensor.size()[:-2] + (num_attention_heads * attn_head_size,)
return tensor.view(new_shape)
def _attn(
self,
query,
key,
value,
attention_mask=None,
head_mask=None,
):
# compute causal mask from causal mask buffer
query_length, key_length = query.size(-2), key.size(-2)
causal_mask = self.bias[:, :, key_length - query_length : key_length, :key_length]
# Keep the attention weights computation in fp32 to avoid overflow issues
query = query.to(torch.float32)
key = key.to(torch.float32)
attn_weights = torch.matmul(query, key.transpose(-1, -2))
mask_value = torch.finfo(attn_weights.dtype).min
# Need to be a tensor, otherwise we get error: `RuntimeError: expected scalar type float but found double`.
# Need to be on the same device, otherwise `RuntimeError: ..., x and y to be on the same device`
mask_value = torch.tensor(mask_value, dtype=attn_weights.dtype).to(attn_weights.device)
attn_weights = torch.where(causal_mask, attn_weights, mask_value)
attn_weights = attn_weights / self.scale_attn
if attention_mask is not None:
# Apply the attention mask
attn_weights = attn_weights + attention_mask
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
attn_weights = attn_weights.to(value.dtype)
attn_weights = self.attn_dropout(attn_weights)
# Mask heads if we want to
if head_mask is not None:
attn_weights = attn_weights * head_mask
attn_output = torch.matmul(attn_weights, value)
return attn_output, attn_weights
def _get_embed_positions(self, position_ids):
embed_positions = self.embed_positions
if embed_positions.device != position_ids.device:
embed_positions = embed_positions.to(position_ids.device)
self.embed_positions = embed_positions
return embed_positions.repeat(position_ids.shape[0], 1, 1)
def forward(
self,
hidden_states: torch.FloatTensor,
layer_past: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = False,
output_attentions: Optional[bool] = False,
) -> Union[
Tuple[torch.Tensor, Tuple[torch.Tensor]],
Optional[Tuple[torch.Tensor, Tuple[torch.Tensor], Tuple[torch.Tensor, ...]]],
]:
query = self.q_proj(hidden_states)
key = self.k_proj(hidden_states)
value = self.v_proj(hidden_states)
query = self._split_heads(query, self.num_attention_heads, self.head_dim, True)
key = self._split_heads(key, self.num_attention_heads, self.head_dim, True)
value = self._split_heads(value, self.num_attention_heads, self.head_dim, False)
if is_torch_fx_proxy(position_ids) or torch.jit.is_tracing():
# The logic to conditionally copy to GPU could not be traced, so we do this
# every time in the torch.fx case
embed_positions = get_embed_positions(self.embed_positions, position_ids)
else:
embed_positions = self._get_embed_positions(position_ids)
repeated_position_ids = position_ids.unsqueeze(-1).repeat(1, 1, embed_positions.shape[-1])
sincos = torch.gather(embed_positions, 1, repeated_position_ids)
sin, cos = torch.split(sincos, sincos.shape[-1] // 2, dim=-1)
if self.rotary_dim is not None:
k_rot = key[:, :, :, : self.rotary_dim]
k_pass = key[:, :, :, self.rotary_dim :]
q_rot = query[:, :, :, : self.rotary_dim]
q_pass = query[:, :, :, self.rotary_dim :]
k_rot = apply_rotary_pos_emb(k_rot, sin, cos)
q_rot = apply_rotary_pos_emb(q_rot, sin, cos)
key = torch.cat([k_rot, k_pass], dim=-1)
query = torch.cat([q_rot, q_pass], dim=-1)
else:
key = apply_rotary_pos_emb(key, sin, cos)
query = apply_rotary_pos_emb(query, sin, cos)
key = key.permute(0, 2, 1, 3)
query = query.permute(0, 2, 1, 3)
if layer_past is not None:
past_key = layer_past[0]
past_value = layer_past[1]
key = torch.cat((past_key, key), dim=-2)
value = torch.cat((past_value, value), dim=-2)
if use_cache is True:
# Note that this cast is quite ugly, but is not implemented before ROPE as the original codebase keeps the key in float32 all along the computation.
# Reference: https://github.com/kingoflolz/mesh-transformer-jax/blob/f8315e3003033b23f21d78361b288953064e0e76/mesh_transformer/layers.py#L128
present = (key.to(hidden_states.dtype), value)
else:
present = None
# compute self-attention: V x Softmax(QK^T)
attn_output, attn_weights = self._attn(query, key, value, attention_mask, head_mask)
attn_output = self._merge_heads(attn_output, self.num_attention_heads, self.head_dim)
attn_output = self.out_proj(attn_output)
attn_output = self.resid_dropout(attn_output)
outputs = (attn_output, present)
if output_attentions:
outputs += (attn_weights,)
return outputs # a, present, (attentions)
class GPTJFlashAttention2(GPTJAttention):
"""
GPTJ flash attention module. This module inherits from `GPTJAttention` as the weights of the module stays
untouched. The only required change would be on the forward pass where it needs to correctly call the public API of
flash attention and deal with padding tokens in case the input contains any of them.
"""
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
# TODO: Should be removed once Flash Attention for RoCm is bumped to 2.1.
# flash_attn<2.1 generates top-left aligned causal mask, while what is needed here is bottom-right alignement, that was made default for flash_attn>=2.1. This attribute is used to handle this difference. Reference: https://github.com/Dao-AILab/flash-attention/releases/tag/v2.1.0.
# Beware that with flash_attn<2.1, using q_seqlen != k_seqlen (except for the case q_seqlen == 1) produces a wrong mask (top-left).
self._flash_attn_uses_top_left_mask = not is_flash_attn_greater_or_equal_2_10()
def forward(
self,
hidden_states: torch.FloatTensor,
layer_past: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = False,
output_attentions: Optional[bool] = False,
) -> Union[
Tuple[torch.Tensor, Tuple[torch.Tensor]],
Optional[Tuple[torch.Tensor, Tuple[torch.Tensor], Tuple[torch.Tensor, ...]]],
]:
query = self.q_proj(hidden_states)
key = self.k_proj(hidden_states)
value = self.v_proj(hidden_states)
query = self._split_heads(query, self.num_attention_heads, self.head_dim, True)
key = self._split_heads(key, self.num_attention_heads, self.head_dim, True)
value = self._split_heads(value, self.num_attention_heads, self.head_dim, False)
if is_torch_fx_proxy(position_ids) or torch.jit.is_tracing():
# The logic to conditionally copy to GPU could not be traced, so we do this
# every time in the torch.fx case
embed_positions = get_embed_positions(self.embed_positions, position_ids)
else:
embed_positions = self._get_embed_positions(position_ids)
repeated_position_ids = position_ids.unsqueeze(-1).repeat(1, 1, embed_positions.shape[-1])
sincos = torch.gather(embed_positions, 1, repeated_position_ids)
sin, cos = torch.split(sincos, sincos.shape[-1] // 2, dim=-1)
if self.rotary_dim is not None:
k_rot = key[:, :, :, : self.rotary_dim]
k_pass = key[:, :, :, self.rotary_dim :]
q_rot = query[:, :, :, : self.rotary_dim]
q_pass = query[:, :, :, self.rotary_dim :]
k_rot = apply_rotary_pos_emb(k_rot, sin, cos)
q_rot = apply_rotary_pos_emb(q_rot, sin, cos)
key = torch.cat([k_rot, k_pass], dim=-1)
query = torch.cat([q_rot, q_pass], dim=-1)
else:
key = apply_rotary_pos_emb(key, sin, cos)
query = apply_rotary_pos_emb(query, sin, cos)
# tanspose to have the desired shape
# before transpose: batch_size x seq_length x num_attention_heads x head_dim
# after transpose: batch_size x num_attention_heads x seq_length x head_dim
key = key.permute(0, 2, 1, 3)
query = query.permute(0, 2, 1, 3)
# value: batch_size x num_attention_heads x seq_length x head_dim
if layer_past is not None:
past_key = layer_past[0]
past_value = layer_past[1]
key = torch.cat((past_key, key), dim=-2)
value = torch.cat((past_value, value), dim=-2)
if use_cache is True:
# Note that this cast is quite ugly, but is not implemented before ROPE as the original codebase keeps the key in float32 all along the computation.
# Reference: https://github.com/kingoflolz/mesh-transformer-jax/blob/f8315e3003033b23f21d78361b288953064e0e76/mesh_transformer/layers.py#L128
present = (key.to(hidden_states.dtype), value)
else:
present = None
# The Flash attention requires the input to have the shape
# batch_size x seq_length x head_dim x hidden_dim
# therefore we need to keep the original shape for query and key, and reshape value
# to have the correct shape.
key = key.permute(0, 2, 1, 3).contiguous()
query = query.permute(0, 2, 1, 3).contiguous()
value = value.permute(0, 2, 1, 3).contiguous()
# In PEFT, usually we cast the layer norms in float32 for training stability reasons
# therefore the input hidden states gets silently casted in float32. Hence, we need
# cast them back in the correct dtype just to be sure everything works as expected.
# This might slowdown training & inference so it is recommended to not cast the LayerNorms
# in fp32. (LlamaRMSNorm handles it correctly)
input_dtype = query.dtype
if input_dtype == torch.float32:
if torch.is_autocast_enabled():
target_dtype = torch.get_autocast_gpu_dtype()
# Handle the case where the model is quantized
elif hasattr(self.config, "_pre_quantization_dtype"):
target_dtype = self.config._pre_quantization_dtype
else:
target_dtype = self.q_proj.weight.dtype
logger.warning_once(
f"The input hidden states seems to be silently casted in float32, this might be related to"
f" the fact you have upcasted embedding or layer norm layers in float32. We will cast back the input in"
f" {target_dtype}."
)
query = query.to(target_dtype)
key = key.to(target_dtype)
value = value.to(target_dtype)
attention_dropout = self.config.attn_pdrop if self.training else 0.0 # attn_pdrop in gptj
query_length = query.shape[1]
# Compute attention
attn_weights = self._flash_attention_forward(
query,
key,
value,
attention_mask,
query_length,
dropout=attention_dropout,
)
# Reshape outputs
attn_output = attn_weights.reshape(
attn_weights.shape[0], attn_weights.shape[1], attn_weights.shape[2] * attn_weights.shape[3]
)
attn_output = self.out_proj(attn_output)
attn_output = self.resid_dropout(attn_output)
outputs = (attn_output, present)
if output_attentions:
outputs += (attn_weights,)
return outputs
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._flash_attention_forward
def _flash_attention_forward(
self, query_states, key_states, value_states, attention_mask, query_length, dropout=0.0, softmax_scale=None
):
"""
Calls the forward method of Flash Attention - if the input hidden states contain at least one padding token
first unpad the input, then computes the attention scores and pad the final attention scores.
Args:
query_states (`torch.Tensor`):
Input query states to be passed to Flash Attention API
key_states (`torch.Tensor`):
Input key states to be passed to Flash Attention API
value_states (`torch.Tensor`):
Input value states to be passed to Flash Attention API
attention_mask (`torch.Tensor`):
The padding mask - corresponds to a tensor of size `(batch_size, seq_len)` where 0 stands for the
position of padding tokens and 1 for the position of non-padding tokens.
dropout (`float`):
Attention dropout
softmax_scale (`float`, *optional*):
The scaling of QK^T before applying softmax. Default to 1 / sqrt(head_dim)
"""
if not self._flash_attn_uses_top_left_mask:
causal = self.is_causal
else:
# TODO: Remove the `query_length != 1` check once Flash Attention for RoCm is bumped to 2.1. For details, please see the comment in LlamaFlashAttention2 __init__.
causal = self.is_causal and query_length != 1
# Contains at least one padding token in the sequence
if attention_mask is not None:
batch_size = query_states.shape[0]
query_states, key_states, value_states, indices_q, cu_seq_lens, max_seq_lens = self._upad_input(
query_states, key_states, value_states, attention_mask, query_length
)
cu_seqlens_q, cu_seqlens_k = cu_seq_lens
max_seqlen_in_batch_q, max_seqlen_in_batch_k = max_seq_lens
attn_output_unpad = flash_attn_varlen_func(
query_states,
key_states,
value_states,
cu_seqlens_q=cu_seqlens_q,
cu_seqlens_k=cu_seqlens_k,
max_seqlen_q=max_seqlen_in_batch_q,
max_seqlen_k=max_seqlen_in_batch_k,
dropout_p=dropout,
softmax_scale=softmax_scale,
causal=causal,
)
attn_output = pad_input(attn_output_unpad, indices_q, batch_size, query_length)
else:
attn_output = flash_attn_func(
query_states, key_states, value_states, dropout, softmax_scale=softmax_scale, causal=causal
)
return attn_output
# Copied from transformers.models.llama.modeling_llama.LlamaFlashAttention2._upad_input with num_heads->num_attention_heads
def _upad_input(self, query_layer, key_layer, value_layer, attention_mask, query_length):
indices_k, cu_seqlens_k, max_seqlen_in_batch_k = _get_unpad_data(attention_mask)
batch_size, kv_seq_len, num_key_value_heads, head_dim = key_layer.shape
key_layer = index_first_axis(
key_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
)
value_layer = index_first_axis(
value_layer.reshape(batch_size * kv_seq_len, num_key_value_heads, head_dim), indices_k
)
if query_length == kv_seq_len:
query_layer = index_first_axis(
query_layer.reshape(batch_size * kv_seq_len, self.num_attention_heads, head_dim), indices_k
)
cu_seqlens_q = cu_seqlens_k
max_seqlen_in_batch_q = max_seqlen_in_batch_k
indices_q = indices_k
elif query_length == 1:
max_seqlen_in_batch_q = 1
cu_seqlens_q = torch.arange(
batch_size + 1, dtype=torch.int32, device=query_layer.device
) # There is a memcpy here, that is very bad.
indices_q = cu_seqlens_q[:-1]
query_layer = query_layer.squeeze(1)
else:
# The -q_len: slice assumes left padding.
attention_mask = attention_mask[:, -query_length:]
query_layer, indices_q, cu_seqlens_q, max_seqlen_in_batch_q = unpad_input(query_layer, attention_mask)
return (
query_layer,
key_layer,
value_layer,
indices_q,
(cu_seqlens_q, cu_seqlens_k),
(max_seqlen_in_batch_q, max_seqlen_in_batch_k),
)
GPTJ_ATTENTION_CLASSES = {
"eager": GPTJAttention,
"flash_attention_2": GPTJFlashAttention2,
}
class GPTJMLP(nn.Module):
def __init__(self, intermediate_size, config): # in MLP: intermediate_size= 4 * embed_dim
super().__init__()
embed_dim = config.n_embd
self.fc_in = nn.Linear(embed_dim, intermediate_size)
self.fc_out = nn.Linear(intermediate_size, embed_dim)
self.act = ACT2FN[config.activation_function]
self.dropout = nn.Dropout(config.resid_pdrop)
def forward(self, hidden_states: Optional[torch.FloatTensor]) -> torch.FloatTensor:
hidden_states = self.fc_in(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.fc_out(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
class GPTJBlock(nn.Module):
def __init__(self, config):
super().__init__()
inner_dim = config.n_inner if config.n_inner is not None else 4 * config.n_embd
self.ln_1 = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon)
self.attn = GPTJ_ATTENTION_CLASSES[config._attn_implementation](config)
self.mlp = GPTJMLP(inner_dim, config)
def forward(
self,
hidden_states: Optional[torch.FloatTensor],
layer_past: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = False,
output_attentions: Optional[bool] = False,
) -> Union[Tuple[torch.Tensor], Optional[Tuple[torch.Tensor, Tuple[torch.FloatTensor, ...]]]]:
residual = hidden_states
hidden_states = self.ln_1(hidden_states)
attn_outputs = self.attn(
hidden_states=hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0] # output_attn: a, present, (attentions)
outputs = attn_outputs[1:]
feed_forward_hidden_states = self.mlp(hidden_states)
hidden_states = attn_output + feed_forward_hidden_states + residual
if use_cache:
outputs = (hidden_states,) + outputs
else:
outputs = (hidden_states,) + outputs[1:]
return outputs # hidden_states, present, (attentions)
class GPTJPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = GPTJConfig
base_model_prefix = "transformer"
is_parallelizable = True
supports_gradient_checkpointing = True
_no_split_modules = ["GPTJBlock"]
_skip_keys_device_placement = "past_key_values"
_supports_flash_attn_2 = True
def __init__(self, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear,)):
# Slightly different from Mesh Transformer JAX which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
GPTJ_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`GPTJConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
GPTJ_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_attention_heads,)` or `(n_layer, num_attention_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_dim)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert *input_ids* indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
PARALLELIZE_DOCSTRING = r"""
This is an experimental feature and is a subject to change at a moment's notice. Uses a device map to distribute
attention modules of the model across several devices. If no device map is given, it will evenly distribute blocks
across all devices.
Args:
device_map (`Dict[int, list]`, optional, defaults to None):
A dictionary that maps attention modules to devices. Note that the embedding module and LMHead are always
automatically mapped to the first device (for esoteric reasons). That means that the first device should
have fewer attention modules mapped to it than other devices. For reference, the GPT-J models have the
following number of attention modules:
- gpt-j-6B: 28
Example:
```python
# Here is an example of a device map on a machine with 4 GPUs using gpt-j-6B, which has a total of 28 attention modules:
model = GPTJForCausalLM.from_pretrained("EleutherAI/gpt-j-6B")
device_map = {
0: [0, 1, 2, 3, 4, 5, 6],
1: [7, 8, 9, 10, 11, 12, 13],
2: [14, 15, 16, 17, 18, 19, 20],
3: [21, 22, 23, 24, 25, 26, 27],
}
model.parallelize(device_map)
```
"""
DEPARALLELIZE_DOCSTRING = r"""
Moves the model to CPU from a model parallel state.
Example:
```python
# On a 4 GPU machine with gpt-j-6B:
model = GPTJForCausalLM.from_pretrained("EleutherAI/gpt-j-6B")
device_map = {
0: [0, 1, 2, 3, 4, 5, 6],
1: [7, 8, 9, 10, 11, 12, 13],
2: [14, 15, 16, 17, 18, 19, 20],
3: [21, 22, 23, 24, 25, 26, 27],
}
model.parallelize(device_map) # Splits the model across several devices
model.deparallelize() # Put the model back on cpu and cleans memory by calling torch.cuda.empty_cache()
```
"""
@add_start_docstrings(
"The bare GPT-J Model transformer outputting raw hidden-states without any specific head on top.",
GPTJ_START_DOCSTRING,
)
class GPTJModel(GPTJPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.embed_dim = config.n_embd
self.vocab_size = config.vocab_size
self.wte = nn.Embedding(config.vocab_size, self.embed_dim)
self.drop = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList([GPTJBlock(config) for _ in range(config.n_layer)])
self.ln_f = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon)
# Model parallel
self.model_parallel = False
self.device_map = None
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
self._use_flash_attention_2 = config._attn_implementation == "flash_attention_2"
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
warnings.warn(
"`GPTJModel.parallelize` is deprecated and will be removed in v5 of Transformers, you should load your"
" model with `device_map='balanced'` in the call to `from_pretrained`. You can also provide your own"
" `device_map` but it needs to be a dictionary module_name to device, so for instance {'h.0': 0, 'h.1': 1,"
" ...}",
FutureWarning,
)
# Check validity of device_map
self.device_map = (
get_device_map(len(self.h), range(torch.cuda.device_count())) if device_map is None else device_map
)
assert_device_map(self.device_map, len(self.h))
self.model_parallel = True
self.first_device = "cpu" if "cpu" in self.device_map.keys() else "cuda:" + str(min(self.device_map.keys()))
self.last_device = "cuda:" + str(max(self.device_map.keys()))
self.wte = self.wte.to(self.first_device)
# Load onto devices
for k, v in self.device_map.items():
for block in v:
cuda_device = "cuda:" + str(k)
self.h[block] = self.h[block].to(cuda_device)
# ln_f to last
self.ln_f = self.ln_f.to(self.last_device)
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.model_parallel = False
self.device_map = None
self.first_device = "cpu"
self.last_device = "cpu"
self.wte = self.wte.to("cpu")
for index in range(len(self.h)):
self.h[index] = self.h[index].to("cpu")
self.ln_f = self.ln_f.to("cpu")
torch.cuda.empty_cache()
def get_input_embeddings(self):
return self.wte
def set_input_embeddings(self, new_embeddings):
self.wte = new_embeddings
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPast,
config_class=_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPast]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
batch_size = input_ids.shape[0]
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size = inputs_embeds.shape[0]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, input_shape[-1])
if past_key_values is None:
past_length = 0
past_key_values = tuple([None] * len(self.h))
else:
past_length = past_key_values[0][0].size(-2)
if position_ids is None:
position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0)
if not self._use_flash_attention_2:
# Attention mask.
if attention_mask is not None:
if batch_size <= 0:
raise ValueError("batch_size has to be defined and > 0")
attention_mask = attention_mask.view(batch_size, -1)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask[:, None, None, :]
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=self.dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * torch.finfo(self.dtype).min
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x num_attention_heads x N x N
# head_mask has shape n_layer x batch x num_attention_heads x N x N
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.wte(input_ids)
hidden_states = inputs_embeds
if token_type_ids is not None:
token_type_embeds = self.wte(token_type_ids)
hidden_states = hidden_states + token_type_embeds
hidden_states = self.drop(hidden_states)
output_shape = (-1,) + input_shape[1:] + (hidden_states.size(-1),)
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
presents = () if use_cache else None
all_self_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)):
# Model parallel
if self.model_parallel:
torch.cuda.set_device(hidden_states.device)
# Ensure layer_past is on same device as hidden_states (might not be correct)
if layer_past is not None:
layer_past = tuple(past_state.to(hidden_states.device) for past_state in layer_past)
# Ensure that attention_mask is always on the same device as hidden_states
if attention_mask is not None:
attention_mask = attention_mask.to(hidden_states.device)
if isinstance(head_mask, torch.Tensor):
head_mask = head_mask.to(hidden_states.device)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
outputs = self._gradient_checkpointing_func(
block.__call__,
hidden_states,
None,
attention_mask,
position_ids,
head_mask[i],
use_cache,
output_attentions,
)
else:
outputs = block(
hidden_states=hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask[i],
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states = outputs[0]
if use_cache is True:
presents = presents + (outputs[1],)
if output_attentions:
all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],)
# Model Parallel: If it's the last layer for that device, put things on the next device
if self.model_parallel:
for k, v in self.device_map.items():
if i == v[-1] and "cuda:" + str(k) != self.last_device:
hidden_states = hidden_states.to("cuda:" + str(k + 1))
hidden_states = self.ln_f(hidden_states)
hidden_states = hidden_states.view(output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
@add_start_docstrings(
"""
The GPT-J Model transformer with a language modeling head on top.
""",
GPTJ_START_DOCSTRING,
)
class GPTJForCausalLM(GPTJPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = GPTJModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size)
# Model parallel
self.model_parallel = False
self.device_map = None
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
warnings.warn(
"`GPTJForCausalLM.parallelize` is deprecated and will be removed in v5 of Transformers, you should load"
" your model with `device_map='balanced'` in the call to `from_pretrained`. You can also provide your own"
" `device_map` but it needs to be a dictionary module_name to device, so for instance {'transformer.h.0':"
" 0, 'transformer.h.1': 1, ...}",
FutureWarning,
)
self.device_map = (
get_device_map(len(self.transformer.h), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.transformer.h))
self.transformer.parallelize(self.device_map)
self.lm_head = self.lm_head.to(self.transformer.first_device)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
warnings.warn(
"Like `parallelize`, `deparallelize` is deprecated and will be removed in v5 of Transformers.",
FutureWarning,
)
self.transformer.deparallelize()
self.transformer = self.transformer.to("cpu")
self.lm_head = self.lm_head.to("cpu")
self.model_parallel = False
torch.cuda.empty_cache()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, inputs_embeds=None, **kwargs):
token_type_ids = kwargs.get("token_type_ids", None)
# Omit tokens covered by past_key_values
if past_key_values:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
if token_type_ids is not None:
token_type_ids = token_type_ids[:, -input_ids.shape[1] :]
attention_mask = kwargs.get("attention_mask", None)
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
# create position_ids on the fly for batch generation
position_ids = attention_mask.long().cumsum(-1) - 1
position_ids.masked_fill_(attention_mask == 0, 1)
if past_key_values:
position_ids = position_ids[:, -input_ids.shape[1] :]
# if `inputs_embeds` are passed, we only want to use them in the 1st generation step
if inputs_embeds is not None and past_key_values is None:
model_inputs = {"inputs_embeds": inputs_embeds}
else:
model_inputs = {"input_ids": input_ids}
model_inputs.update(
{
"past_key_values": past_key_values,
"use_cache": kwargs.get("use_cache"),
"position_ids": position_ids,
"attention_mask": attention_mask,
"token_type_ids": token_type_ids,
}
)
return model_inputs
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutputWithPast,
config_class=_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, CausalLMOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.transformer.first_device)
hidden_states = hidden_states.to(self.lm_head.weight.device)
# make sure sampling in fp16 works correctly and
# compute loss in fp32 to match with mesh-tf version
# https://github.com/EleutherAI/gpt-neo/blob/89ce74164da2fb16179106f54e2269b5da8db333/models/gpt2/gpt2.py#L179
lm_logits = self.lm_head(hidden_states).to(torch.float32)
loss = None
if labels is not None:
# move labels to correct device to enable model parallelism
labels = labels.to(lm_logits.device)
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
loss = loss.to(hidden_states.dtype)
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutputWithPast(
loss=loss,
logits=lm_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@staticmethod
def _reorder_cache(
past_key_values: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor
) -> Tuple[Tuple[torch.Tensor]]:
"""
This function is used to re-order the `past_key_values` cache if [`~PretrainedModel.beam_search`] or
[`~PretrainedModel.beam_sample`] is called. This is required to match `past_key_values` with the correct
beam_idx at every generation step.
"""
return tuple(
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past)
for layer_past in past_key_values
)
@add_start_docstrings(
"""
The GPT-J Model transformer with a sequence classification head on top (linear layer).
[`GPTJForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT, GPT-2, GPT-Neo) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
GPTJ_START_DOCSTRING,
)
class GPTJForSequenceClassification(GPTJPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = GPTJModel(config)
self.score = nn.Linear(config.n_embd, self.num_labels, bias=False)
# Model parallel
self.model_parallel = False
self.device_map = None
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint="ydshieh/tiny-random-gptj-for-sequence-classification",
output_type=SequenceClassifierOutputWithPast,
config_class=_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutputWithPast]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size = input_ids.shape[0]
else:
batch_size = inputs_embeds.shape[0]
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[torch.arange(batch_size, device=logits.device), sequence_lengths]
loss = None
if labels is not None:
labels = labels.to(pooled_logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The GPT-J Model transformer with a span classification head on top for extractive question-answering tasks like
SQuAD (a linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
GPTJ_START_DOCSTRING,
)
class GPTJForQuestionAnswering(GPTJPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = GPTJModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Model parallel
self.model_parallel = False
self.device_map = None
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
real_checkpoint=_REAL_CHECKPOINT_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
start_positions: Optional[torch.LongTensor] = None,
end_positions: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1).to(start_logits.device)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1).to(end_logits.device)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/gptj/modeling_tf_gptj.py
|
# coding=utf-8
# Copyright 2022 The EleutherAI and HuggingFace Teams. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 GPT-J model."""
from __future__ import annotations
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
)
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPast,
TFCausalLMOutputWithPast,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutputWithPast,
)
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFSharedEmbeddings,
get_initializer,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import logging
from .configuration_gptj import GPTJConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "EleutherAI/gpt-j-6B"
_CONFIG_FOR_DOC = "GPTJConfig"
def create_sinusoidal_positions(num_pos: int, dim: int) -> tf.Tensor:
inv_freq = tf.cast(1.0 / (10000 ** (tf.range(0, dim, 2) / dim)), tf.float32)
sinusoid_inp = tf.cast(tf.einsum("i , j -> i j", tf.range(num_pos, dtype=tf.float32), inv_freq), tf.float32)
sin, cos = tf.sin(sinusoid_inp), tf.cos(sinusoid_inp)
out = tf.concat((sin, cos), axis=1)
return out
def rotate_every_two(x: tf.Tensor) -> tf.Tensor:
rotate_half_tensor = tf.stack((-x[:, :, :, 1::2], x[:, :, :, ::2]), axis=-1)
new_shape = shape_list(rotate_half_tensor)[:-2] + [tf.math.reduce_prod(shape_list(rotate_half_tensor)[-2:])]
rotate_half_tensor = tf.reshape(rotate_half_tensor, new_shape)
return rotate_half_tensor
def apply_rotary_pos_emb(tensor: tf.Tensor, sincos: tf.Tensor) -> tf.Tensor:
sin_pos, cos_pos = sincos
sin_pos = tf.repeat(sin_pos[:, :, None, :], 2, 3)
cos_pos = tf.repeat(cos_pos[:, :, None, :], 2, 3)
return (tensor * cos_pos) + (rotate_every_two(tensor) * sin_pos)
class TFGPTJAttention(keras.layers.Layer):
def __init__(self, config: GPTJConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.hidden_size
self.num_attention_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_attention_heads
if self.head_dim * self.num_attention_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_attention_heads (got `embed_dim`: {self.embed_dim} and"
f" `num_attention_heads`: {self.num_attention_heads})."
)
self.scale_attn = self.head_dim**0.5
self.rotary_dim = config.rotary_dim
self.attn_dropout = keras.layers.Dropout(config.attn_pdrop)
self.resid_dropout = keras.layers.Dropout(config.resid_pdrop)
self.q_proj = keras.layers.Dense(
self.embed_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="q_proj",
)
self.k_proj = keras.layers.Dense(
self.embed_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="k_proj",
)
self.v_proj = keras.layers.Dense(
self.embed_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="v_proj",
)
self.out_proj = keras.layers.Dense(
self.embed_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="out_proj",
)
self.max_positions = config.max_position_embeddings
self.lower_triangle_mask = tf.reshape(
tf.cast(tf.experimental.numpy.tril(tf.ones((self.max_positions, self.max_positions))), tf.int8),
(1, 1, self.max_positions, self.max_positions),
)
pos_embd_dim = self.rotary_dim or self.embed_dim
self.embed_positions = create_sinusoidal_positions(self.max_positions, pos_embd_dim)
def get_causal_mask(self, key_length, query_length) -> tf.Tensor:
return tf.cast(self.lower_triangle_mask[:, :, key_length - query_length : key_length, :key_length], tf.bool)
@staticmethod
def get_masked_bias(dtype: tf.DType) -> tf.Tensor:
return tf.cast(tf.constant(-1e9), dtype)
def _split_heads(self, hidden_states: tf.Tensor, rotary: bool) -> tf.Tensor:
"""
Splits hidden dim into attn_head_size and num_attention_heads
"""
new_shape = shape_list(hidden_states)[:-1] + [self.num_attention_heads, self.head_dim]
hidden_states = tf.reshape(hidden_states, new_shape)
if rotary:
return hidden_states
if len(shape_list(hidden_states)) == 4:
return tf.transpose(hidden_states, (0, 2, 1, 3)) # (batch, head, seq_length, head_features)
if len(shape_list(hidden_states)) == 5:
return tf.transpose(hidden_states, (0, 1, 3, 2, 4)) # (batch, blocks, head, block_length, head_features)
raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(shape_list(hidden_states))}")
def _merge_heads(self, hidden_states: tf.Tensor) -> tf.Tensor:
"""
Merges attn_head_size dim and num_attn_heads dim into hidden dim
"""
if len(shape_list(hidden_states)) == 4:
hidden_states = tf.transpose(hidden_states, (0, 2, 1, 3))
elif len(shape_list(hidden_states)) == 5:
hidden_states = tf.transpose(hidden_states, (0, 1, 3, 2, 4))
else:
raise ValueError(f"Input tensor rank should be one of [4, 5], but is: {len(shape_list(hidden_states))}")
new_shape = shape_list(hidden_states)[:-2] + [self.num_attention_heads * self.head_dim]
return tf.reshape(hidden_states, new_shape)
def _attn(
self,
query: tf.Tensor,
key: tf.Tensor,
value: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
) -> Tuple[tf.Tensor, tf.Tensor]:
# compute causal mask from causal mask buffer
query_length, key_length = shape_list(query)[-2], shape_list(key)[-2]
causal_mask = self.get_causal_mask(key_length, query_length)
# Keep the attention weights computation in fp32 to avoid overflow issues
query = tf.cast(query, tf.float32)
key = tf.cast(key, tf.float32)
attn_weights = tf.matmul(query, key, transpose_b=True)
attn_weights = tf.where(causal_mask, attn_weights, self.get_masked_bias(attn_weights.dtype))
attn_weights = attn_weights / self.scale_attn
if attention_mask is not None:
# Apply the attention mask
attn_weights = attn_weights + attention_mask
attn_weights = stable_softmax(attn_weights, axis=-1)
attn_weights = tf.cast(attn_weights, value.dtype)
attn_weights = self.attn_dropout(attn_weights)
# Mask heads if we want to
if head_mask is not None:
attn_weights = attn_weights * head_mask
attn_output = tf.matmul(attn_weights, value)
return attn_output, attn_weights
def call(
self,
hidden_states: tf.Tensor,
layer_past: Optional[Tuple[tf.Tensor, tf.Tensor]] = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
use_cache: bool = False,
output_attentions: bool = False,
):
query = self.q_proj(hidden_states)
key = self.k_proj(hidden_states)
value = self.v_proj(hidden_states)
query = self._split_heads(query, True)
key = self._split_heads(key, True)
value = self._split_heads(value, False)
sincos = tf.cast(tf.gather(self.embed_positions, position_ids, axis=0), hidden_states.dtype)
sincos = tf.split(sincos, 2, axis=-1)
if self.rotary_dim is not None:
k_rot = key[:, :, :, : self.rotary_dim]
k_pass = key[:, :, :, self.rotary_dim :]
q_rot = query[:, :, :, : self.rotary_dim]
q_pass = query[:, :, :, self.rotary_dim :]
k_rot = apply_rotary_pos_emb(k_rot, sincos)
q_rot = apply_rotary_pos_emb(q_rot, sincos)
key = tf.concat((k_rot, k_pass), axis=-1)
query = tf.concat((q_rot, q_pass), axis=-1)
else:
key = apply_rotary_pos_emb(key, sincos)
query = apply_rotary_pos_emb(query, sincos)
key = tf.transpose(key, (0, 2, 1, 3))
query = tf.transpose(query, (0, 2, 1, 3))
if layer_past is not None:
past_key = layer_past[0]
past_value = layer_past[1]
key = tf.concat((past_key, key), axis=-2)
value = tf.concat((past_value, value), axis=-2)
if use_cache is True:
present = (key, value)
else:
present = None
# compute self-attention: V x Softmax(QK^T)
attn_output, attn_weights = self._attn(query, key, value, attention_mask, head_mask)
attn_output = self._merge_heads(attn_output)
attn_output = self.out_proj(attn_output)
attn_output = self.resid_dropout(attn_output)
outputs = (attn_output, present)
if output_attentions:
outputs += (attn_weights,)
return outputs # a, present, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.embed_dim])
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.embed_dim])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.embed_dim])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.embed_dim])
class TFGPTJMLP(keras.layers.Layer):
def __init__(self, intermediate_size: int, config: GPTJConfig, **kwargs):
super().__init__(**kwargs)
embed_dim = config.n_embd
self.fc_in = keras.layers.Dense(
intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="fc_in"
)
self.fc_out = keras.layers.Dense(
embed_dim, kernel_initializer=get_initializer(config.initializer_range), name="fc_out"
)
self.act = get_tf_activation(config.activation_function)
self.dropout = keras.layers.Dropout(config.embd_pdrop)
self.embed_dim = config.n_embd
self.intermediate_size = intermediate_size
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.fc_in(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.fc_out(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "fc_in", None) is not None:
with tf.name_scope(self.fc_in.name):
self.fc_in.build([None, None, self.embed_dim])
if getattr(self, "fc_out", None) is not None:
with tf.name_scope(self.fc_out.name):
self.fc_out.build([None, None, self.intermediate_size])
class TFGPTJBlock(keras.layers.Layer):
def __init__(self, config: GPTJConfig, **kwargs):
super().__init__(**kwargs)
inner_dim = config.n_inner if config.n_inner is not None else 4 * config.n_embd
self.ln_1 = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_1")
self.attn = TFGPTJAttention(config, name="attn")
self.mlp = TFGPTJMLP(inner_dim, config, name="mlp")
self.config = config
def call(
self,
hidden_states: tf.Tensor,
layer_past: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
use_cache: bool = False,
output_attentions: bool = False,
):
residual = hidden_states
hidden_states = self.ln_1(hidden_states)
attn_outputs = self.attn(
hidden_states=hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
) # attn_outputs: attn_output, present, (attentions)
attn_output = attn_outputs[0]
outputs = attn_outputs[1:]
feed_forward_hidden_states = self.mlp(hidden_states)
hidden_states = attn_output + feed_forward_hidden_states + residual
if use_cache:
outputs = (hidden_states,) + outputs
else:
outputs = (hidden_states,) + outputs[1:]
return outputs # hidden_states, present, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "ln_1", None) is not None:
with tf.name_scope(self.ln_1.name):
self.ln_1.build([None, None, self.config.n_embd])
if getattr(self, "attn", None) is not None:
with tf.name_scope(self.attn.name):
self.attn.build(None)
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
@keras_serializable
class TFGPTJMainLayer(keras.layers.Layer):
config_class = GPTJConfig
def __init__(self, config: GPTJConfig, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
self.config = config
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.use_cache = config.use_cache
self.return_dict = config.use_return_dict
self.num_hidden_layers = config.n_layer
self.n_embd = config.n_embd
self.n_positions = config.n_positions
self.initializer_range = config.initializer_range
self.wte = TFSharedEmbeddings(
config.vocab_size, config.hidden_size, initializer_range=config.initializer_range, name="wte"
)
self.drop = keras.layers.Dropout(config.embd_pdrop)
self.h = [TFGPTJBlock(config, name=f"h_._{i}") for i in range(config.n_layer)]
self.ln_f = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_f")
self.embed_dim = config.n_embd
def get_input_embeddings(self):
return self.wte
def set_input_embeddings(self, value: tf.Tensor):
self.wte.weight = value
self.wte.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids=None,
past_key_values=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
) -> Union[TFBaseModelOutputWithPast, Tuple[tf.Tensor]]:
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
input_ids = tf.reshape(input_ids, [-1, input_shape[-1]])
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if past_key_values is None:
past_length = 0
past_key_values = [None] * len(self.h)
else:
past_length = shape_list(past_key_values[0][0])[-2]
if position_ids is None:
position_ids = tf.expand_dims(tf.range(past_length, input_shape[-1] + past_length), axis=0)
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
attention_mask = tf.reshape(attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1]))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
one_cst = tf.constant(1.0)
attention_mask = tf.cast(attention_mask, dtype=one_cst.dtype)
attention_mask = tf.multiply(tf.subtract(one_cst, attention_mask), tf.constant(-10000.0))
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.num_hidden_layers
# head_mask = tf.constant([0] * self.num_hidden_layers)
position_ids = tf.reshape(position_ids, [-1, shape_list(position_ids)[-1]])
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.wte.vocab_size)
inputs_embeds = self.wte(input_ids, mode="embedding")
if token_type_ids is not None:
token_type_ids = tf.reshape(token_type_ids, [-1, shape_list(token_type_ids)[-1]])
token_type_embeds = self.wte(token_type_ids, mode="embedding")
else:
token_type_embeds = tf.constant(0.0)
token_type_embeds = tf.cast(token_type_embeds, dtype=inputs_embeds.dtype)
hidden_states = inputs_embeds + token_type_embeds
hidden_states = self.drop(hidden_states, training=training)
output_shape = input_shape + [shape_list(hidden_states)[-1]]
presents = () if use_cache else None
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)):
if output_hidden_states:
all_hidden_states = all_hidden_states + (tf.reshape(hidden_states, output_shape),)
outputs = block(
hidden_states=hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask[i],
use_cache=use_cache,
output_attentions=output_attentions,
training=training,
)
hidden_states = outputs[0]
if use_cache:
presents = presents + (outputs[1],)
if output_attentions:
all_attentions = all_attentions + (outputs[2 if use_cache else 1],)
hidden_states = self.ln_f(hidden_states)
hidden_states = tf.reshape(hidden_states, output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if output_attentions:
# let the number of heads free (-1) so we can extract attention even after head pruning
attention_output_shape = input_shape[:-1] + [-1] + shape_list(all_attentions[0])[-2:]
all_attentions = tuple(tf.reshape(t, attention_output_shape) for t in all_attentions)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "wte", None) is not None:
with tf.name_scope(self.wte.name):
self.wte.build(None)
if getattr(self, "ln_f", None) is not None:
with tf.name_scope(self.ln_f.name):
self.ln_f.build([None, None, self.embed_dim])
if getattr(self, "h", None) is not None:
for layer in self.h:
with tf.name_scope(layer.name):
layer.build(None)
class TFGPTJPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = GPTJConfig
base_model_prefix = "transformer"
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"h.\d+.attn.bias"]
GPTJ_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`GPTJConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
GPTJ_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `(batch_size, input_ids_length)`):
`input_ids_length` = `sequence_length` if `past` is `None` else `past[0].shape[-2]` (`sequence_length` of
input past key value states). Indices of input sequence tokens in the vocabulary.
If `past` is used, only input IDs that do not have their past calculated should be passed as `input_ids`.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
past_key_values (`List[tf.Tensor]` of length `config.n_layers`):
Contains pre-computed hidden-states (key and values in the attention blocks) as computed by the model (see
`past` output below). Can be used to speed up sequential decoding. The token ids which have their past
given to this model should not be passed as input ids as they have already been computed.
attention_mask (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`Numpy array` or `tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple. This argument can be used
in eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare GPT-J Model transformer outputting raw hidden-states without any specific head on top.",
GPTJ_START_DOCSTRING,
)
class TFGPTJModel(TFGPTJPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFGPTJMainLayer(config, name="transformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPast, Tuple[tf.Tensor]]:
r"""
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past`). Set to `False` during training, `True` during generation
"""
outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
@add_start_docstrings(
"""
The GPT-J Model transformer with a language modeling head on top.
""",
GPTJ_START_DOCSTRING,
)
class TFGPTJForCausalLM(TFGPTJPreTrainedModel, TFCausalLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFGPTJMainLayer(config, name="transformer")
self.lm_head = keras.layers.Dense(
config.vocab_size, kernel_initializer=get_initializer(config.initializer_range), name="lm_head"
)
self.config = config
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, inputs, past_key_values=None, use_cache=None, **kwargs):
token_type_ids = kwargs.get("token_type_ids", None)
# only last token for inputs_ids if past is defined in kwargs
if past_key_values:
inputs = tf.expand_dims(inputs[:, -1], -1)
if token_type_ids is not None:
token_type_ids = tf.expand_dims(token_type_ids[:, -1], -1)
position_ids = kwargs.get("position_ids", None)
attention_mask = kwargs.get("attention_mask", None)
if attention_mask is not None and position_ids is None:
position_ids = tf.math.cumsum(attention_mask, axis=-1, exclusive=True)
if past_key_values:
position_ids = tf.expand_dims(position_ids[:, -1], -1)
return {
"input_ids": inputs,
"attention_mask": attention_mask,
"position_ids": position_ids,
"past_key_values": past_key_values,
"use_cache": use_cache,
"token_type_ids": token_type_ids,
}
@unpack_inputs
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFCausalLMOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFCausalLMOutputWithPast, Tuple[tf.Tensor]]:
r"""
labels (`np.ndarray` or `tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = lm_logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels, shifted_logits)
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutputWithPast(
loss=loss,
logits=lm_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build([None, None, self.config.n_embd])
@add_start_docstrings(
"""
The GPT-J Model transformer with a sequence classification head on top (linear layer).
[`GPTJForSequenceClassification`] uses the last token in order to do the classification, as other causal models
(e.g. GPT, GPT-2, GPT-Neo) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
GPTJ_START_DOCSTRING,
)
class TFGPTJForSequenceClassification(TFGPTJPreTrainedModel, TFSequenceClassificationLoss):
_keys_to_ignore_on_load_missing = [r"h.\d+.attn.masked_bias", r"h.\d+.attn.bias", r"lm_head.weight"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFGPTJMainLayer(config, name="transformer")
self.score = keras.layers.Dense(
self.num_labels,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="score",
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFSequenceClassifierOutputWithPast, Tuple[tf.Tensor]]:
r"""
labels (`np.ndarray` or `tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
logits_shape = shape_list(logits)
in_logits = None
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = (
tf.argmax(tf.cast(tf.math.equal(input_ids, self.config.pad_token_id), input_ids.dtype), axis=-1)
- 1
)
sequence_lengths = tf.where(
sequence_lengths >= 0,
sequence_lengths,
tf.cast(shape_list(input_ids[-1]), sequence_lengths.dtype) - 1,
)
in_logits = tf.gather(logits, sequence_lengths, batch_dims=1, axis=1)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
loss = None
if labels is not None:
if self.config.pad_token_id is None and logits_shape[0] != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if not tf.is_tensor(sequence_lengths):
in_logits = logits[0 : logits_shape[0], sequence_lengths]
loss = self.hf_compute_loss(tf.reshape(labels, [-1]), tf.reshape(in_logits, [-1, self.num_labels]))
pooled_logits = in_logits if in_logits is not None else logits
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "score", None) is not None:
with tf.name_scope(self.score.name):
self.score.build([None, None, self.config.n_embd])
@add_start_docstrings(
"""
The GPT-J Model transformer with a span classification head on top for extractive question-answering tasks like
SQuAD (a linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
GPTJ_START_DOCSTRING,
)
class TFGPTJForQuestionAnswering(TFGPTJPreTrainedModel, TFQuestionAnsweringLoss):
_keys_to_ignore_on_load_missing = [r"h.\d+.attn.masked_bias", r"h.\d+.attn.bias", r"lm_head.weight"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFGPTJMainLayer(config, name="transformer")
self.qa_outputs = keras.layers.Dense(
self.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(GPTJ_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
start_positions: np.ndarray | tf.Tensor | None = None,
end_positions: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFQuestionAnsweringModelOutput, Tuple[tf.Tensor]]:
r"""
start_positions (`np.ndarray` or `tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`np.ndarray` or `tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = transformer_outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if start_positions is not None and end_positions is not None:
labels = {"start_position": start_positions}
labels["end_position"] = end_positions
loss = self.hf_compute_loss(labels, (start_logits, end_logits))
if not return_dict:
output = (start_logits, end_logits) + transformer_outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "qa_outputs", None) is not None:
with tf.name_scope(self.qa_outputs.name):
self.qa_outputs.build([None, None, self.config.hidden_size])
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fsmt/modeling_fsmt.py
|
# coding=utf-8
# Copyright 2020 The Facebook AI Research Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Original implementation: https://github.com/pytorch/fairseq/tree/master/examples/wmt19
# Authors:
# - @alexeib Alexei Baevski
# - @edunov Sergey Edunov
# - @michaelauli Michael Auli
# - @myleott Myle Ott
# - @nng555 Nathan Ng
# - David Grangier
# - Kyra Yee
#
# Paper: Facebook FAIR's WMT19 News Translation Task Submission https://arxiv.org/abs/1907.06616
#
"""PyTorch Fairseq model, ported from https://github.com/pytorch/fairseq/tree/master/examples/wmt19"""
import math
from typing import Any, Dict, List, Optional, Tuple, Union
import torch
from torch import Tensor, nn
from torch.nn import CrossEntropyLoss, LayerNorm
from ...activations import ACT2FN
from ...integrations.deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_fsmt import FSMTConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/wmt19-ru-en"
_CONFIG_FOR_DOC = "FSMTConfig"
# See all FSMT models at https://huggingface.co/models?filter=fsmt
# Porting notes:
# this one is modeled after BartModel*
#
# Currently only translation (fairseq also has weights for LM)
#
# fairseq provides weights for ru-en, en-ru and de-en, en-de pairs. All have been ported.
# - ru-en, en-ru use asymmetric vocab
# - de-en, en-de use a merged single vocab (but the code works as if they are separate)
#
# Differences with Bart:
# - not using bos token
# - 2 separate vocabs (src and target)
# - embed weights aren't tied
# - uses a model Ensemble (but that part isn't ported/implemented yet) - so we
# aren't getting as good of a BLEU score
# - uses a projection layer at the end of the decoder
# - doesn't use final_logits_bias
# - beam search: stops as soon as num_beams == len(hypos) (whereas transformers
# is not satisfied there and will continue searching until the next cycles
# aren't promising something better), comparing BLEU scores - the transformers
# algorithm is slightly superior, therefore using the latter. But if you want
# to match fairseq outputs, you need to pass ``early_stopping=True`` to ``generate()``.
#
# SinusoidalPositionalEmbedding is slightly different from Bart's - generates
# different embeddings. This implementation is copied verbatim from fairseq with
# some small changes to make it work here.
#
# Other changes:
# - doesn't support use_cache as Bart's version does
#
#
# FSMTConfig changes with BartConfig
#
# Differences with BART:
# - src/tgt vocabs aren't shared
# - token embeddings aren't shared
# - needs a language pair
# - scale_embedding are True
#
# some unused args were removed too
#
#
# TODO:
# - port model ensemble (fs uses 4 model checkpoints)
# - solve beam search discrepancies
# docstyle-ignore
"""
Here is how to compare BLEU scores against fairseq implementation:
# en-ru
export PAIR=en-ru
export DATA_DIR=data/$PAIR
export SAVE_DIR=data/$PAIR
export BS=8
export NUM_BEAMS=50
mkdir -p $DATA_DIR
sacrebleu -t wmt19 -l $PAIR --echo src > $DATA_DIR/val.source
sacrebleu -t wmt19 -l $PAIR --echo ref > $DATA_DIR/val.target
echo $PAIR
PYTHONPATH="src:examples/seq2seq" python examples/seq2seq/run_eval.py facebook/wmt19-$PAIR $DATA_DIR/val.source $SAVE_DIR/test_translations.txt --reference_path $DATA_DIR/val.target --score_path $SAVE_DIR/test_bleu.json --bs $BS --task translation --num_beams $NUM_BEAMS
# (fairseq BLEU: 36.4 http://matrix.statmt.org/matrix/output/1914?score_id=37605)
# ru-en
export PAIR=ru-en
export DATA_DIR=data/$PAIR
export SAVE_DIR=data/$PAIR
export BS=8
export NUM_BEAMS=50
mkdir -p $DATA_DIR
sacrebleu -t wmt19 -l $PAIR --echo src > $DATA_DIR/val.source
sacrebleu -t wmt19 -l $PAIR --echo ref > $DATA_DIR/val.target
PYTHONPATH="src:examples/seq2seq" python examples/seq2seq/run_eval.py facebook/wmt19-$PAIR $DATA_DIR/val.source $SAVE_DIR/test_translations.txt --reference_path $DATA_DIR/val.target --score_path $SAVE_DIR/test_bleu.json --bs $BS --task translation --num_beams $NUM_BEAMS
# (fairseq BLEU: 41.3 http://matrix.statmt.org/matrix/output/1907?run_id=6937)
# de-en
export PAIR=de-en
export DATA_DIR=data/$PAIR
export SAVE_DIR=data/$PAIR
export BS=8
export NUM_BEAMS=50
mkdir -p $DATA_DIR
sacrebleu -t wmt19 -l $PAIR --echo src > $DATA_DIR/val.source
sacrebleu -t wmt19 -l $PAIR --echo ref > $DATA_DIR/val.target
echo $PAIR
PYTHONPATH="src:examples/seq2seq" python examples/seq2seq/run_eval.py facebook/wmt19-$PAIR $DATA_DIR/val.source $SAVE_DIR/test_translations.txt --reference_path $DATA_DIR/val.target --score_path $SAVE_DIR/test_bleu.json --bs $BS --task translation --num_beams $NUM_BEAMS
# (fairseq BLEU: 42.3 http://matrix.statmt.org/matrix/output/1902?run_id=6750)
# en-de
export PAIR=en-de
export DATA_DIR=data/$PAIR
export SAVE_DIR=data/$PAIR
export BS=8
mkdir -p $DATA_DIR
sacrebleu -t wmt19 -l $PAIR --echo src > $DATA_DIR/val.source
sacrebleu -t wmt19 -l $PAIR --echo ref > $DATA_DIR/val.target
echo $PAIR
PYTHONPATH="src:examples/seq2seq" python examples/seq2seq/run_eval.py facebook/wmt19-$PAIR $DATA_DIR/val.source $SAVE_DIR/test_translations.txt --reference_path $DATA_DIR/val.target --score_path $SAVE_DIR/test_bleu.json --bs $BS --task translation --num_beams $NUM_BEAMS
# (fairseq BLEU: 43.1 http://matrix.statmt.org/matrix/output/1909?run_id=6862)
"""
FSMT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`FSMTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
FSMT_GENERATION_EXAMPLE = r"""
Translation example::
```python
>>> from transformers import AutoTokenizer, FSMTForConditionalGeneration
>>> mname = "facebook/wmt19-ru-en"
>>> model = FSMTForConditionalGeneration.from_pretrained(mname)
>>> tokenizer = AutoTokenizer.from_pretrained(mname)
>>> src_text = "Машинное обучение - это здорово, не так ли?"
>>> input_ids = tokenizer(src_text, return_tensors="pt").input_ids
>>> outputs = model.generate(input_ids, num_beams=5, num_return_sequences=3)
>>> tokenizer.decode(outputs[0], skip_special_tokens=True)
"Machine learning is great, isn't it?"
```
"""
FSMT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`FSTMTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_input_ids (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are decoder input IDs?](../glossary#decoder-input-ids)
FSMT uses the `eos_token_id` as the starting token for `decoder_input_ids` generation. If `past_key_values`
is used, optionally only the last `decoder_input_ids` have to be input (see `past_key_values`).
decoder_attention_mask (`torch.BoolTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Default behavior: generate a tensor that ignores pad tokens in `decoder_input_ids`. Causal mask will also
be used by default.
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder. Mask values selected in `[0,
1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`Tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)` is a sequence of hidden-states at
the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`Tuple(torch.FloatTensor)` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden-states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, target_sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `decoder_input_ids` you can choose to directly pass an embedded
representation. If `past_key_values` is used, optionally only the last `decoder_inputs_embeds` have to be
input (see `past_key_values`). This is useful if you want more control over how to convert
`decoder_input_ids` indices into associated vectors than the model's internal embedding lookup matrix.
If `decoder_input_ids` and `decoder_inputs_embeds` are both unset, `decoder_inputs_embeds` takes the value
of `inputs_embeds`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
def invert_mask(attention_mask):
"""Turns 1->0, 0->1, False->True, True-> False"""
assert attention_mask.dim() == 2
return attention_mask.eq(0)
def triu_onnx(x, diagonal=0):
l = x.shape[0]
arange = torch.arange(l, device=x.device)
mask = arange.expand(l, l)
arange = arange.unsqueeze(-1)
if diagonal:
arange = arange + diagonal
mask = mask >= arange
return x.masked_fill(mask == 0, 0)
def _prepare_fsmt_decoder_inputs(
config,
input_ids,
decoder_input_ids=None,
decoder_padding_mask=None,
causal_mask_dtype=torch.float32,
):
"""
Prepare masks that ignore padding tokens in the decoder and a causal mask for the decoder if none are provided.
This mimics the default behavior in fairseq. To override it pass in masks. Note: this is not called during
generation
"""
pad_token_id = config.pad_token_id
if decoder_input_ids is None:
decoder_input_ids = shift_tokens_right(input_ids, pad_token_id)
bsz, tgt_len = decoder_input_ids.size()
if decoder_padding_mask is None:
decoder_padding_mask = make_padding_mask(decoder_input_ids, pad_token_id)
else:
decoder_padding_mask = invert_mask(decoder_padding_mask)
causal_mask = triu_onnx(fill_with_neg_inf(torch.zeros(tgt_len, tgt_len, dtype=causal_mask_dtype)), 1).to(
device=decoder_input_ids.device
)
return decoder_input_ids, decoder_padding_mask, causal_mask
class PretrainedFSMTModel(PreTrainedModel):
config_class = FSMTConfig
base_model_prefix = "model"
def _init_weights(self, module):
std = self.config.init_std
if isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, SinusoidalPositionalEmbedding):
pass
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
@property
def dummy_inputs(self):
pad_token = self.config.pad_token_id
input_ids = torch.tensor([[0, 6, 10, 4, 2], [0, 8, 12, 2, pad_token]], device=self.device)
dummy_inputs = {
"attention_mask": input_ids.ne(pad_token),
"input_ids": input_ids,
}
return dummy_inputs
def _make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer
# Helper Functions, mostly for making masks
def _check_shapes(shape_1, shape2):
if shape_1 != shape2:
raise AssertionError(f"shape mismatch: {shape_1} != {shape2}")
def shift_tokens_right(input_ids, pad_token_id):
"""Shift input ids one token to the right, and wrap the last non pad token (usually <eos>)."""
# replace possible -100 values in labels by `pad_token_id`
input_ids.masked_fill_(input_ids == -100, pad_token_id)
prev_output_tokens = input_ids.clone()
index_of_eos = (input_ids.ne(pad_token_id).sum(dim=1) - 1).unsqueeze(-1)
prev_output_tokens[:, 0] = input_ids.gather(1, index_of_eos).squeeze()
prev_output_tokens[:, 1:] = input_ids[:, :-1]
return prev_output_tokens
def make_padding_mask(input_ids, padding_idx=1):
"""True for pad tokens"""
padding_mask = input_ids.eq(padding_idx)
if not padding_mask.any():
padding_mask = None
return padding_mask
# Helper Modules
class EncoderLayer(nn.Module):
def __init__(self, config: FSMTConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = Attention(self.embed_dim, config.encoder_attention_heads, dropout=config.attention_dropout)
self.self_attn_layer_norm = LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = LayerNorm(self.embed_dim)
def forward(self, x, encoder_padding_mask, layer_head_mask, output_attentions=False):
"""
Args:
x (`torch.Tensor`): input to the layer of shape *(seq_len, batch, embed_dim)*
encoder_padding_mask (`torch.ByteTensor`): binary ByteTensor of shape
*(batch, src_len)* where padding elements are indicated by `1`.
for t_tgt, t_src is excluded (or masked out), =0 means it is
included in attention
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
*(config.encoder_attention_heads,)*.
Returns:
encoded output of shape *(seq_len, batch, embed_dim)*
"""
residual = x
x, attn_weights = self.self_attn(
query=x,
key=x,
key_padding_mask=encoder_padding_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
x = residual + x
x = self.self_attn_layer_norm(x)
residual = x
x = self.activation_fn(self.fc1(x))
x = nn.functional.dropout(x, p=self.activation_dropout, training=self.training)
x = self.fc2(x)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
x = residual + x
x = self.final_layer_norm(x)
return x, attn_weights
class FSMTEncoder(nn.Module):
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a [`EncoderLayer`].
Args:
config: FSMTConfig
"""
def __init__(self, config: FSMTConfig, embed_tokens):
super().__init__()
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
self.padding_idx = embed_tokens.padding_idx
self.embed_tokens = embed_tokens
embed_dim = embed_tokens.embedding_dim
self.embed_scale = math.sqrt(embed_dim) if config.scale_embedding else 1.0
self.embed_positions = SinusoidalPositionalEmbedding(
config.max_position_embeddings + self.padding_idx + 1, embed_dim, self.padding_idx
)
self.layers = nn.ModuleList([EncoderLayer(config) for _ in range(config.encoder_layers)]) # type: List[EncoderLayer]
def forward(
self,
input_ids: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
inputs_embeds: torch.Tensor = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
"""
Args:
input_ids (`torch.LongTensor`): tokens in the source language of shape
*(batch, src_len)*
attention_mask (`torch.LongTensor`): indicating which indices are padding tokens
inputs_embeds (`torch.FloatTensor`):
embedding vectors of shape *(batch, src_len, embed_dim)*
head_mask (`torch.Tensor` of shape `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
Returns:
BaseModelOutput or Tuple comprised of:
- **x** (`torch.Tensor`): the last encoder layer's output of shape *(src_len, batch, embed_dim)*
- **encoder_states** (`Tuple(torch.FloatTensor`)): all intermediate hidden states of shape *(src_len,
batch, embed_dim)*. Only populated if *output_hidden_states:* is True.
- **all_attentions** (`Tuple(torch.FloatTensor`)): Attention weights for each layer.
During training might not be of length n_layers because of layer dropout.
"""
# check attention mask and invert
if attention_mask is not None:
attention_mask = invert_mask(attention_mask)
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
inputs_embeds = self.embed_tokens(input_ids) * self.embed_scale
embed_pos = self.embed_positions(input_ids)
elif inputs_embeds is not None:
inputs_embeds = inputs_embeds * self.embed_scale
# We assume zeros hidden states correspond to padding tokens
# and create `position_ids` where inputs_embeds[:, :, 0] == 0
position_ids = inputs_embeds[:, :, 0].masked_fill(
inputs_embeds[:, :, 0].eq(0), self.embed_positions.padding_idx
)
embed_pos = self.embed_positions(position_ids)
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
x = inputs_embeds + embed_pos
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
# B x T x C -> T x B x C
x = x.transpose(0, 1)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
assert head_mask.size()[0] == (
len(self.layers)
), f"The head_mask should be specified for {len(self.layers)} layers, but it is for {head_mask.size()[0]}."
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
x = x.transpose(0, 1) # T x B x C -> B x T x C
encoder_states += (x,)
x = x.transpose(0, 1) # B x T x C -> T x B x C
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = torch.rand([])
if self.training and (dropout_probability < self.layerdrop): # skip the layer
attn = None
else:
x, attn = encoder_layer(
x,
attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
output_attentions=output_attentions,
)
if output_attentions:
all_attentions = all_attentions + (attn,)
# T x B x C -> B x T x C
x = x.transpose(0, 1)
if output_hidden_states:
encoder_states += (x,)
if not return_dict:
return tuple(v for v in [x, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(last_hidden_state=x, hidden_states=encoder_states, attentions=all_attentions)
class DecoderLayer(nn.Module):
def __init__(self, config: FSMTConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = Attention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = LayerNorm(self.embed_dim)
self.encoder_attn = Attention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
encoder_decoder_attention=True,
)
self.encoder_attn_layer_norm = LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = LayerNorm(self.embed_dim)
def forward(
self,
x,
encoder_hidden_states,
encoder_attn_mask=None,
layer_state=None,
causal_mask=None,
layer_head_mask=None,
cross_attn_layer_head_mask=None,
decoder_padding_mask=None,
output_attentions=False,
):
residual = x
if layer_state is None:
layer_state = {}
# Self Attention
x, self_attn_weights = self.self_attn(
query=x,
key=x,
layer_state=layer_state, # adds keys to layer state
key_padding_mask=decoder_padding_mask,
attn_mask=causal_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
x = residual + x
x = self.self_attn_layer_norm(x)
# Cross attention
residual = x
assert self.encoder_attn.cache_key != self.self_attn.cache_key
x, cross_attn_weights = self.encoder_attn(
query=x,
key=encoder_hidden_states,
key_padding_mask=encoder_attn_mask,
layer_state=layer_state, # mutates layer state
layer_head_mask=cross_attn_layer_head_mask,
output_attentions=output_attentions,
)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
x = residual + x
x = self.encoder_attn_layer_norm(x)
# Fully Connected
residual = x
x = self.activation_fn(self.fc1(x))
x = nn.functional.dropout(x, p=self.activation_dropout, training=self.training)
x = self.fc2(x)
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
x = residual + x
x = self.final_layer_norm(x)
return (
x,
self_attn_weights,
layer_state,
cross_attn_weights,
) # layer_state = cache for decoding
class FSMTDecoder(nn.Module):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`DecoderLayer`]
Args:
config: FSMTConfig
embed_tokens (nn.Embedding): output embedding
"""
def __init__(self, config: FSMTConfig, embed_tokens: nn.Embedding):
super().__init__()
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
self.padding_idx = embed_tokens.padding_idx
self.embed_scale = math.sqrt(config.d_model) if config.scale_embedding else 1.0
self.embed_tokens = embed_tokens
embed_dim = embed_tokens.embedding_dim
self.embed_positions = SinusoidalPositionalEmbedding(
config.max_position_embeddings + self.padding_idx + 1, embed_dim, self.padding_idx
)
self.layers = nn.ModuleList([DecoderLayer(config) for _ in range(config.decoder_layers)]) # type: List[DecoderLayer]
if is_deepspeed_zero3_enabled():
import deepspeed
with deepspeed.zero.GatheredParameters(self.embed_tokens.weight, modifier_rank=None):
embed_tokens_weight_shape = self.embed_tokens.weight.shape
else:
embed_tokens_weight_shape = self.embed_tokens.weight.shape
self.output_projection = nn.Linear(embed_tokens_weight_shape[1], embed_tokens_weight_shape[0], bias=False)
self.output_projection.weight = self.embed_tokens.weight
def forward(
self,
input_ids: torch.Tensor,
encoder_hidden_states: torch.Tensor,
encoder_padding_mask: torch.Tensor,
decoder_padding_mask: torch.Tensor,
decoder_causal_mask: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
"""
Includes several features from "Jointly Learning to Align and Translate with Transformer Models" (Garg et al.,
EMNLP 2019).
Args:
input_ids (`torch.LongTensor` of shape `(batch, tgt_len)`):
previous decoder outputs for teacher forcing
encoder_hidden_states: output from the encoder, used for
encoder-side attention
encoder_padding_mask: for ignoring pad tokens
past_key_values (dict or None): dictionary used for storing state during generation
head_mask (`torch.Tensor` of shape `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
Returns:
BaseModelOutputWithPast or tuple:
- the decoder's features of shape *(batch, tgt_len, embed_dim)*
- the cache
- hidden states
- attentions
"""
# check attention mask and invert
if encoder_padding_mask is not None:
encoder_padding_mask = invert_mask(encoder_padding_mask)
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif input_ids is not None:
# embed positions
positions = self.embed_positions(input_ids)
if use_cache:
input_ids = input_ids[:, -1:]
positions = positions[:, -1:] # happens after we embed them
x = self.embed_tokens(input_ids) * self.embed_scale
elif inputs_embeds is not None:
# We assume zeros hidden states correspond to padding tokens
# and create `position_ids` where inputs_embeds[:, :, 0] == 0
position_ids = inputs_embeds[:, :, 0].masked_fill(
inputs_embeds[:, :, 0].eq(0), self.embed_positions.padding_idx
)
positions = self.embed_positions(position_ids)
x = inputs_embeds * self.embed_scale
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
x += positions
x = nn.functional.dropout(x, p=self.dropout, training=self.training)
# Convert to FSMT output format: (BS, seq_len, model_dim) -> (seq_len, BS, model_dim)
x = x.transpose(0, 1)
encoder_hidden_states = encoder_hidden_states.transpose(0, 1)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attns = () if output_attentions else None
next_decoder_cache = []
# check if head_mask has a correct number of layers specified if desired
for attn_mask, mask_name in zip([head_mask, cross_attn_head_mask], ["head_mask", "cross_attn_head_mask"]):
if attn_mask is not None:
assert attn_mask.size()[0] == (len(self.layers)), (
f"The `{mask_name}` should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
x = x.transpose(0, 1)
all_hidden_states += (x,)
x = x.transpose(0, 1)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
layer_state = past_key_values[idx] if past_key_values is not None else None
x, layer_self_attn, layer_past, layer_cross_attn = decoder_layer(
x,
encoder_hidden_states,
encoder_attn_mask=encoder_padding_mask,
decoder_padding_mask=decoder_padding_mask,
layer_state=layer_state,
causal_mask=decoder_causal_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
cross_attn_layer_head_mask=(cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None),
output_attentions=output_attentions,
)
if use_cache:
next_decoder_cache.append(layer_past.copy())
if output_attentions:
all_self_attns += (layer_self_attn,)
all_cross_attns += (layer_cross_attn,)
# add hidden states from the last decoder layer
if output_hidden_states:
x = x.transpose(0, 1)
all_hidden_states += (x,)
x = x.transpose(0, 1)
# Convert to standard output format: (seq_len, BS, model_dim) -> (BS, seq_len, model_dim)
x = x.transpose(0, 1)
encoder_hidden_states = encoder_hidden_states.transpose(0, 1)
x = self.output_projection(x)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(
v for v in [x, next_cache, all_hidden_states, all_self_attns, all_cross_attns] if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=x,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attns,
)
def _reorder_buffer(attn_cache, new_order):
for k, input_buffer_k in attn_cache.items():
if input_buffer_k is not None:
attn_cache[k] = input_buffer_k.index_select(0, new_order)
return attn_cache
class Attention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(
self,
embed_dim,
num_heads,
dropout=0.0,
bias=True,
encoder_decoder_attention=False, # otherwise self_attention
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
assert self.head_dim * num_heads == self.embed_dim, "embed_dim must be divisible by num_heads"
self.scaling = self.head_dim**-0.5
self.encoder_decoder_attention = encoder_decoder_attention
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.cache_key = "encoder_decoder" if self.encoder_decoder_attention else "self"
def _shape(self, tensor, seq_len, bsz):
return tensor.contiguous().view(seq_len, bsz * self.num_heads, self.head_dim).transpose(0, 1)
def forward(
self,
query,
key: Optional[Tensor],
key_padding_mask: Optional[Tensor] = None,
layer_state: Optional[Dict[str, Optional[Tensor]]] = None,
attn_mask: Optional[Tensor] = None,
layer_head_mask: Optional[Tensor] = None,
output_attentions=False,
) -> Tuple[Tensor, Optional[Tensor]]:
"""Input shape: Time(SeqLen) x Batch x Channel"""
static_kv: bool = self.encoder_decoder_attention
tgt_len, bsz, embed_dim = query.size()
assert embed_dim == self.embed_dim
assert list(query.size()) == [tgt_len, bsz, embed_dim]
# get here for encoder decoder cause of static_kv
if layer_state is not None: # reuse k,v and encoder_padding_mask
saved_state = layer_state.get(self.cache_key, {})
if "prev_key" in saved_state and static_kv:
# previous time steps are cached - no need to recompute key and value if they are static
key = None
else:
saved_state = None
layer_state = {}
q = self.q_proj(query) * self.scaling
if static_kv:
if key is None:
k = v = None
else:
k = self.k_proj(key)
v = self.v_proj(key)
else:
k = self.k_proj(query)
v = self.v_proj(query)
q = self._shape(q, tgt_len, bsz)
if k is not None:
k = self._shape(k, -1, bsz)
if v is not None:
v = self._shape(v, -1, bsz)
if saved_state is not None:
k, v, key_padding_mask = self._use_saved_state(k, v, saved_state, key_padding_mask, static_kv, bsz)
# Update cache
layer_state[self.cache_key] = {
"prev_key": k.view(bsz, self.num_heads, -1, self.head_dim),
"prev_value": v.view(bsz, self.num_heads, -1, self.head_dim),
"prev_key_padding_mask": key_padding_mask if not static_kv else None,
}
assert k is not None
src_len = k.size(1)
attn_weights = torch.bmm(q, k.transpose(1, 2))
assert attn_weights.size() == (bsz * self.num_heads, tgt_len, src_len)
if attn_mask is not None:
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attn_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
# This is part of a workaround to get around fork/join parallelism not supporting Optional types.
if key_padding_mask is not None and key_padding_mask.dim() == 0:
key_padding_mask = None
assert key_padding_mask is None or key_padding_mask.size()[:2] == (
bsz,
src_len,
)
if key_padding_mask is not None: # don't attend to padding symbols
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
reshaped = key_padding_mask.unsqueeze(1).unsqueeze(2)
attn_weights = attn_weights.masked_fill(reshaped, torch.finfo(attn_weights.dtype).min)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if layer_head_mask is not None:
assert layer_head_mask.size() == (
self.num_heads,
), f"Head mask for a single layer should be of size {(self.num_heads,)}, but is {layer_head_mask.size()}"
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if output_attentions:
# make sure that attn_weights are included in graph
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, src_len)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, src_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(
attn_weights,
p=self.dropout,
training=self.training,
)
assert v is not None
attn_output = torch.bmm(attn_probs, v)
assert attn_output.size() == (bsz * self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(0, 1).contiguous().view(tgt_len, bsz, embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped
def _use_saved_state(self, k, v, saved_state, key_padding_mask, static_kv, bsz):
# saved states are stored with shape (bsz, num_heads, seq_len, head_dim)
if "prev_key" in saved_state:
_prev_key = saved_state["prev_key"]
assert _prev_key is not None
prev_key = _prev_key.view(bsz * self.num_heads, -1, self.head_dim)
if static_kv:
k = prev_key
else:
assert k is not None
k = torch.cat([prev_key, k], dim=1)
if "prev_value" in saved_state:
_prev_value = saved_state["prev_value"]
assert _prev_value is not None
prev_value = _prev_value.view(bsz * self.num_heads, -1, self.head_dim)
if static_kv:
v = prev_value
else:
assert v is not None
v = torch.cat([prev_value, v], dim=1)
assert k is not None and v is not None
prev_key_padding_mask: Optional[Tensor] = saved_state.get("prev_key_padding_mask", None)
if prev_key_padding_mask is not None:
if static_kv:
new_key_padding_mask = prev_key_padding_mask
else:
new_key_padding_mask = torch.cat([prev_key_padding_mask, key_padding_mask], dim=1)
else:
new_key_padding_mask = key_padding_mask
return k, v, new_key_padding_mask
def fill_with_neg_inf(t):
"""FP16-compatible function that fills a input_ids with -inf."""
return t.float().fill_(torch.finfo(t.dtype).min).type_as(t)
# Public API
def _get_shape(t):
return getattr(t, "shape", None)
@add_start_docstrings(
"The bare FSMT Model outputting raw hidden-states without any specific head on top.",
FSMT_START_DOCSTRING,
)
class FSMTModel(PretrainedFSMTModel):
_tied_weights_keys = ["decoder.embed_tokens.weight", "decoder.output_projection.weight"]
def __init__(self, config: FSMTConfig):
super().__init__(config)
padding_idx = config.pad_token_id
encoder_embed_tokens = nn.Embedding(config.src_vocab_size, config.d_model, padding_idx)
decoder_embed_tokens = nn.Embedding(config.tgt_vocab_size, config.d_model, padding_idx)
self.encoder = FSMTEncoder(config, encoder_embed_tokens)
self.decoder = FSMTDecoder(config, decoder_embed_tokens)
# Initialize weights and apply final processing
self.post_init()
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
def _tie_weights(self):
if self.config.tie_word_embeddings:
self._tie_or_clone_weights(self.decoder.embed_tokens, self.get_input_embeddings())
self._tie_or_clone_weights(self.decoder.output_projection, self.get_input_embeddings())
@add_start_docstrings_to_model_forward(FSMT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=Seq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: torch.LongTensor,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[torch.FloatTensor]] = None,
past_key_values: Optional[Tuple[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], Seq2SeqModelOutput]:
if decoder_input_ids is None:
use_cache = False
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# make masks if user doesn't supply
if not use_cache and input_ids is not None:
decoder_input_ids, decoder_padding_mask, causal_mask = _prepare_fsmt_decoder_inputs(
self.config,
input_ids,
decoder_input_ids=decoder_input_ids,
decoder_padding_mask=decoder_attention_mask,
causal_mask_dtype=self.decoder.embed_tokens.weight.dtype,
)
else:
decoder_padding_mask, causal_mask = None, None
if decoder_input_ids is None and decoder_inputs_embeds is None:
raise ValueError("Make sure that `decoder_input_ids` or `decoder_inputs_embeds` are passed.")
if encoder_outputs is None:
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=False
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
decoder_outputs = self.decoder(
decoder_input_ids,
encoder_outputs[0],
attention_mask,
decoder_padding_mask,
decoder_causal_mask=causal_mask,
inputs_embeds=decoder_inputs_embeds,
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return Seq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
def get_input_embeddings(self):
return self.encoder.embed_tokens
def set_input_embeddings(self, value):
self.encoder.embed_tokens = value
def get_output_embeddings(self):
return self.decoder.embed_tokens
def set_output_embeddings(self, value):
self.decoder.embed_tokens = value
@add_start_docstrings(
"The FSMT Model with a language modeling head. Can be used for summarization.", FSMT_START_DOCSTRING
)
class FSMTForConditionalGeneration(PretrainedFSMTModel):
base_model_prefix = "model"
_tied_weights_keys = ["decoder.embed_tokens.weight", "decoder.output_projection.weight"]
def __init__(self, config: FSMTConfig):
super().__init__(config)
base_model = FSMTModel(config)
self.model = base_model
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FSMT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(FSMT_GENERATION_EXAMPLE)
def forward(
self,
input_ids: torch.LongTensor,
attention_mask: Optional[torch.Tensor] = None,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[Tuple[torch.FloatTensor]] = None,
past_key_values: Optional[Tuple[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.Tensor] = None,
decoder_inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], Seq2SeqLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.model(
input_ids,
inputs_embeds=inputs_embeds,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_inputs_embeds=decoder_inputs_embeds,
encoder_outputs=encoder_outputs,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
lm_logits = outputs[0]
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
# TODO(SS): do we need to ignore pad tokens in labels?
masked_lm_loss = loss_fct(lm_logits.view(-1, self.config.tgt_vocab_size), labels.view(-1))
if not return_dict:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return Seq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past_key_values=None,
attention_mask=None,
head_mask=None,
decoder_head_mask=None,
cross_attn_head_mask=None,
use_cache=None,
encoder_outputs=None,
**kwargs,
):
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"head_mask": head_mask,
"decoder_head_mask": decoder_head_mask,
"cross_attn_head_mask": cross_attn_head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
def prepare_decoder_input_ids_from_labels(self, labels: torch.Tensor):
return shift_tokens_right(labels, self.config.pad_token_id)
@staticmethod
def _reorder_cache(past_key_values, beam_idx):
reordered_past = []
for layer_past in past_key_values:
# get the correct batch idx from decoder layer's batch dim for cross and self-attn
layer_past_new = {
attn_key: _reorder_buffer(attn_cache, beam_idx) for attn_key, attn_cache in layer_past.items()
}
reordered_past.append(layer_past_new)
return reordered_past
def get_encoder(self):
return self.model.encoder
def get_decoder(self):
return self.model.decoder
def get_output_embeddings(self):
return self.model.decoder.embed_tokens
def set_output_embeddings(self, value):
self.model.decoder.embed_tokens = value
class SinusoidalPositionalEmbedding(nn.Embedding):
"""
This module produces sinusoidal positional embeddings of any length.
We don't want to save the weight of this embedding since it's not trained (deterministic) and it can be huge.
Padding symbols are ignored.
These embeddings get automatically extended in forward if more positions is needed.
"""
def __init__(self, num_positions, embedding_dim, padding_idx):
self.make_weight(num_positions, embedding_dim, padding_idx)
def make_weight(self, num_positions, embedding_dim, padding_idx):
weight = self.get_embedding(num_positions, embedding_dim, padding_idx)
if not hasattr(self, "weight"):
# in ___init__
super().__init__(num_positions, embedding_dim, padding_idx, _weight=weight)
else:
# in forward put the weights on the correct dtype and device of the param
weight = weight.to(dtype=self.weight.dtype, device=self.weight.device)
self.weight = nn.Parameter(weight)
self.weight.detach_()
self.weight.requires_grad = False
@staticmethod
def get_embedding(num_embeddings, embedding_dim, padding_idx):
"""
Build sinusoidal embeddings.
This matches the implementation in tensor2tensor, but differs slightly from the description in Section 3.5 of
"Attention Is All You Need".
"""
half_dim = embedding_dim // 2
emb = math.log(10000) / (half_dim - 1)
emb = torch.exp(torch.arange(half_dim, dtype=torch.int64).float() * -emb)
emb = torch.arange(num_embeddings, dtype=torch.int64).float().unsqueeze(1) * emb.unsqueeze(0)
emb = torch.cat([torch.sin(emb), torch.cos(emb)], dim=1).view(num_embeddings, -1)
if embedding_dim % 2 == 1:
# zero pad
emb = torch.cat([emb, torch.zeros(num_embeddings, 1)], dim=1)
if padding_idx is not None:
emb[padding_idx, :] = 0
return emb
@staticmethod
def make_positions(tensor, padding_idx: int):
"""
Replace non-padding symbols with their position numbers.
Position numbers begin at padding_idx+1. Padding symbols are ignored.
"""
# The series of casts and type-conversions here are carefully
# balanced to both work with ONNX export and XLA. In particular XLA
# prefers ints, cumsum defaults to output longs, and ONNX doesn't know
# how to handle the dtype kwarg in cumsum.
mask = tensor.ne(padding_idx).int()
return (torch.cumsum(mask, dim=1).type_as(mask) * mask).long() + padding_idx
def forward(
self,
input,
incremental_state: Optional[Any] = None,
timestep: Optional[Tensor] = None,
):
"""Input is expected to be of size [bsz x seqlen]."""
bsz, seq_len = input.shape[:2]
max_pos = self.padding_idx + 1 + seq_len
if max_pos > self.weight.size(0):
# expand embeddings if needed
self.make_weight(max_pos, self.embedding_dim, self.padding_idx)
positions = self.make_positions(input, self.padding_idx)
return super().forward(positions)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fsmt/tokenization_fsmt.py
|
# coding=utf-8
# Copyright 2019 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for FSMT."""
import json
import os
import re
import unicodedata
from typing import Dict, List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"src_vocab_file": "vocab-src.json",
"tgt_vocab_file": "vocab-tgt.json",
"merges_file": "merges.txt",
}
def get_pairs(word):
"""
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length
strings)
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
def replace_unicode_punct(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/replace-unicode-punctuation.perl
"""
text = text.replace("，", ",")
text = re.sub(r"。\s*", ". ", text)
text = text.replace("、", ",")
text = text.replace("”", '"')
text = text.replace("“", '"')
text = text.replace("∶", ":")
text = text.replace("：", ":")
text = text.replace("？", "?")
text = text.replace("《", '"')
text = text.replace("》", '"')
text = text.replace("）", ")")
text = text.replace("！", "!")
text = text.replace("（", "(")
text = text.replace("；", ";")
text = text.replace("１", "1")
text = text.replace("」", '"')
text = text.replace("「", '"')
text = text.replace("０", "0")
text = text.replace("３", "3")
text = text.replace("２", "2")
text = text.replace("５", "5")
text = text.replace("６", "6")
text = text.replace("９", "9")
text = text.replace("７", "7")
text = text.replace("８", "8")
text = text.replace("４", "4")
text = re.sub(r"．\s*", ". ", text)
text = text.replace("～", "~")
text = text.replace("’", "'")
text = text.replace("…", "...")
text = text.replace("━", "-")
text = text.replace("〈", "<")
text = text.replace("〉", ">")
text = text.replace("【", "[")
text = text.replace("】", "]")
text = text.replace("％", "%")
return text
def remove_non_printing_char(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/remove-non-printing-char.perl
"""
output = []
for char in text:
cat = unicodedata.category(char)
if cat.startswith("C"):
continue
output.append(char)
return "".join(output)
# Porting notes:
# this one is modeled after XLMTokenizer
#
# added:
# - src_vocab_file,
# - tgt_vocab_file,
# - langs,
class FSMTTokenizer(PreTrainedTokenizer):
"""
Construct an FAIRSEQ Transformer tokenizer. Based on Byte-Pair Encoding. The tokenization process is the following:
- Moses preprocessing and tokenization.
- Normalizing all inputs text.
- The arguments `special_tokens` and the function `set_special_tokens`, can be used to add additional symbols (like
"__classify__") to a vocabulary.
- The argument `langs` defines a pair of languages.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
langs (`List[str]`, *optional*):
A list of two languages to translate from and to, for instance `["en", "ru"]`.
src_vocab_file (`str`, *optional*):
File containing the vocabulary for the source language.
tgt_vocab_file (`st`, *optional*):
File containing the vocabulary for the target language.
merges_file (`str`, *optional*):
File containing the merges.
do_lower_case (`bool`, *optional*, defaults to `False`):
Whether or not to lowercase the input when tokenizing.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
<Tip>
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the `cls_token`.
</Tip>
sep_token (`str`, *optional*, defaults to `"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
langs=None,
src_vocab_file=None,
tgt_vocab_file=None,
merges_file=None,
do_lower_case=False,
unk_token="<unk>",
bos_token="<s>",
sep_token="</s>",
pad_token="<pad>",
**kwargs,
):
try:
import sacremoses
except ImportError:
raise ImportError(
"You need to install sacremoses to use XLMTokenizer. "
"See https://pypi.org/project/sacremoses/ for installation."
)
self.sm = sacremoses
self.src_vocab_file = src_vocab_file
self.tgt_vocab_file = tgt_vocab_file
self.merges_file = merges_file
self.do_lower_case = do_lower_case
# cache of sm.MosesPunctNormalizer instance
self.cache_moses_punct_normalizer = {}
# cache of sm.MosesTokenizer instance
self.cache_moses_tokenizer = {}
self.cache_moses_detokenizer = {}
if langs and len(langs) == 2:
self.src_lang, self.tgt_lang = langs
else:
raise ValueError(
f"arg `langs` needs to be a list of 2 langs, e.g. ['en', 'ru'], but got {langs}. "
"Usually that means that tokenizer can't find a mapping for the given model path "
"in PRETRAINED_VOCAB_FILES_MAP, and other maps of this tokenizer."
)
with open(src_vocab_file, encoding="utf-8") as src_vocab_handle:
self.encoder = json.load(src_vocab_handle)
with open(tgt_vocab_file, encoding="utf-8") as tgt_vocab_handle:
tgt_vocab = json.load(tgt_vocab_handle)
self.decoder = {v: k for k, v in tgt_vocab.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[:-1]
merges = [tuple(merge.split()[:2]) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
super().__init__(
langs=langs,
src_vocab_file=src_vocab_file,
tgt_vocab_file=tgt_vocab_file,
merges_file=merges_file,
do_lower_case=do_lower_case,
unk_token=unk_token,
bos_token=bos_token,
sep_token=sep_token,
pad_token=pad_token,
**kwargs,
)
# hack override
def get_vocab(self) -> Dict[str, int]:
return self.get_src_vocab()
# hack override
@property
def vocab_size(self) -> int:
return self.src_vocab_size
def moses_punct_norm(self, text, lang):
if lang not in self.cache_moses_punct_normalizer:
punct_normalizer = self.sm.MosesPunctNormalizer(lang=lang)
self.cache_moses_punct_normalizer[lang] = punct_normalizer
return self.cache_moses_punct_normalizer[lang].normalize(text)
def moses_tokenize(self, text, lang):
if lang not in self.cache_moses_tokenizer:
moses_tokenizer = self.sm.MosesTokenizer(lang=lang)
self.cache_moses_tokenizer[lang] = moses_tokenizer
return self.cache_moses_tokenizer[lang].tokenize(
text, aggressive_dash_splits=True, return_str=False, escape=True
)
def moses_detokenize(self, tokens, lang):
if lang not in self.cache_moses_detokenizer:
moses_detokenizer = self.sm.MosesDetokenizer(lang=lang)
self.cache_moses_detokenizer[lang] = moses_detokenizer
return self.cache_moses_detokenizer[lang].detokenize(tokens)
def moses_pipeline(self, text, lang):
text = replace_unicode_punct(text)
text = self.moses_punct_norm(text, lang)
text = remove_non_printing_char(text)
return text
@property
def src_vocab_size(self):
return len(self.encoder)
@property
def tgt_vocab_size(self):
return len(self.decoder)
def get_src_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def get_tgt_vocab(self):
return dict(self.decoder, **self.added_tokens_decoder)
def bpe(self, token):
word = tuple(token[:-1]) + (token[-1] + "</w>",)
if token in self.cache:
return self.cache[token]
pairs = get_pairs(word)
if not pairs:
return token + "</w>"
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
if word == "\n </w>":
word = "\n</w>"
self.cache[token] = word
return word
def _tokenize(self, text, lang="en", bypass_tokenizer=False):
"""
Tokenize a string given language code using Moses.
Details of tokenization:
- [sacremoses](https://github.com/alvations/sacremoses): port of Moses
- Install with `pip install sacremoses`
Args:
- lang: ISO language code (default = 'en') (string). Languages should belong of the model supported
languages. However, we don't enforce it.
- bypass_tokenizer: Allow users to preprocess and tokenize the sentences externally (default = False)
(bool). If True, we only apply BPE.
Returns:
List of tokens.
"""
# ignore `lang` which is currently isn't explicitly passed in tokenization_utils.py and always results in lang=en
# if lang != self.src_lang:
# raise ValueError(f"Expected lang={self.src_lang}, but got {lang}")
lang = self.src_lang
if self.do_lower_case:
text = text.lower()
if bypass_tokenizer:
text = text.split()
else:
text = self.moses_pipeline(text, lang=lang)
text = self.moses_tokenize(text, lang=lang)
split_tokens = []
for token in text:
if token:
split_tokens.extend(list(self.bpe(token).split(" ")))
return split_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
# remove BPE
tokens = [t.replace(" ", "").replace("</w>", " ") for t in tokens]
tokens = "".join(tokens).split()
# detokenize
text = self.moses_detokenize(tokens, self.tgt_lang)
return text
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A FAIRSEQ Transformer sequence has the following format:
- single sequence: `<s> X </s>`
- pair of sequences: `<s> A </s> B </s>`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
sep = [self.sep_token_id]
# no bos used in fairseq
if token_ids_1 is None:
return token_ids_0 + sep
return token_ids_0 + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
# no bos used in fairseq
if token_ids_1 is not None:
return ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return ([0] * len(token_ids_0)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. A FAIRSEQ
Transformer sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
Creates a mask from the two sequences passed to be used in a sequence-pair classification task. An
FAIRSEQ_TRANSFORMER sequence pair mask has the following format:
"""
sep = [self.sep_token_id]
# no bos used in fairseq
if token_ids_1 is None:
return len(token_ids_0 + sep) * [0]
return len(token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
src_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["src_vocab_file"]
)
tgt_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["tgt_vocab_file"]
)
merges_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(src_vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
with open(tgt_vocab_file, "w", encoding="utf-8") as f:
tgt_vocab = {v: k for k, v in self.decoder.items()}
f.write(json.dumps(tgt_vocab, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merges_file, "w", encoding="utf-8") as writer:
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merges_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return src_vocab_file, tgt_vocab_file, merges_file
def __getstate__(self):
state = self.__dict__.copy()
state["sm"] = None
return state
def __setstate__(self, d):
self.__dict__ = d
try:
import sacremoses
except ImportError:
raise ImportError(
"You need to install sacremoses to use XLMTokenizer. "
"See https://pypi.org/project/sacremoses/ for installation."
)
self.sm = sacremoses
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fsmt/configuration_fsmt.py
|
# coding=utf-8
# Copyright 2019-present, Facebook, Inc and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" FSMT configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import FSMT_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class DecoderConfig(PretrainedConfig):
r"""
Configuration class for FSMT's decoder specific things. note: this is a private helper class
"""
model_type = "fsmt_decoder"
def __init__(self, vocab_size=0, bos_token_id=0):
super().__init__()
self.vocab_size = vocab_size
self.bos_token_id = bos_token_id
class FSMTConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`FSMTModel`]. It is used to instantiate a FSMT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the FSMT
[facebook/wmt19-en-ru](https://huggingface.co/facebook/wmt19-en-ru) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
langs (`List[str]`):
A list with source language and target_language (e.g., ['en', 'ru']).
src_vocab_size (`int`):
Vocabulary size of the encoder. Defines the number of different tokens that can be represented by the
`inputs_ids` passed to the forward method in the encoder.
tgt_vocab_size (`int`):
Vocabulary size of the decoder. Defines the number of different tokens that can be represented by the
`inputs_ids` passed to the forward method in the decoder.
d_model (`int`, *optional*, defaults to 1024):
Dimensionality of the layers and the pooler layer.
encoder_layers (`int`, *optional*, defaults to 12):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 12):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer decoder.
decoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 4096):
Dimensionality of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `Callable`, *optional*, defaults to `"relu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for activations inside the fully connected layer.
max_position_embeddings (`int`, *optional*, defaults to 1024):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
scale_embedding (`bool`, *optional*, defaults to `True`):
Scale embeddings by diving by sqrt(d_model).
bos_token_id (`int`, *optional*, defaults to 0)
Beginning of stream token id.
pad_token_id (`int`, *optional*, defaults to 1)
Padding token id.
eos_token_id (`int`, *optional*, defaults to 2)
End of stream token id.
decoder_start_token_id (`int`, *optional*):
This model starts decoding with `eos_token_id`
encoder_layerdrop (`float`, *optional*, defaults to 0.0):
Google "layerdrop arxiv", as its not explainable in one line.
decoder_layerdrop (`float`, *optional*, defaults to 0.0):
Google "layerdrop arxiv", as its not explainable in one line.
is_encoder_decoder (`bool`, *optional*, defaults to `True`):
Whether this is an encoder/decoder model.
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether to tie input and output embeddings.
num_beams (`int`, *optional*, defaults to 5)
Number of beams for beam search that will be used by default in the `generate` method of the model. 1 means
no beam search.
length_penalty (`float`, *optional*, defaults to 1)
Exponential penalty to the length that is used with beam-based generation. It is applied as an exponent to
the sequence length, which in turn is used to divide the score of the sequence. Since the score is the log
likelihood of the sequence (i.e. negative), `length_penalty` > 0.0 promotes longer sequences, while
`length_penalty` < 0.0 encourages shorter sequences.
early_stopping (`bool`, *optional*, defaults to `False`)
Flag that will be used by default in the `generate` method of the model. Whether to stop the beam search
when at least `num_beams` sentences are finished per batch or not.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
forced_eos_token_id (`int`, *optional*, defaults to 2):
The id of the token to force as the last generated token when `max_length` is reached. Usually set to
`eos_token_id`.
Examples:
```python
>>> from transformers import FSMTConfig, FSMTModel
>>> # Initializing a FSMT facebook/wmt19-en-ru style configuration
>>> config = FSMTConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = FSMTModel(config)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "fsmt"
attribute_map = {"num_attention_heads": "encoder_attention_heads", "hidden_size": "d_model"}
# update the defaults from config file
def __init__(
self,
langs=["en", "de"],
src_vocab_size=42024,
tgt_vocab_size=42024,
activation_function="relu",
d_model=1024,
max_length=200,
max_position_embeddings=1024,
encoder_ffn_dim=4096,
encoder_layers=12,
encoder_attention_heads=16,
encoder_layerdrop=0.0,
decoder_ffn_dim=4096,
decoder_layers=12,
decoder_attention_heads=16,
decoder_layerdrop=0.0,
attention_dropout=0.0,
dropout=0.1,
activation_dropout=0.0,
init_std=0.02,
decoder_start_token_id=2,
is_encoder_decoder=True,
scale_embedding=True,
tie_word_embeddings=False,
num_beams=5,
length_penalty=1.0,
early_stopping=False,
use_cache=True,
pad_token_id=1,
bos_token_id=0,
eos_token_id=2,
forced_eos_token_id=2,
**common_kwargs,
):
self.langs = langs
self.src_vocab_size = src_vocab_size
self.tgt_vocab_size = tgt_vocab_size
self.d_model = d_model # encoder_embed_dim and decoder_embed_dim
self.encoder_ffn_dim = encoder_ffn_dim
self.encoder_layers = self.num_hidden_layers = encoder_layers
self.encoder_attention_heads = encoder_attention_heads
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.decoder_ffn_dim = decoder_ffn_dim
self.decoder_layers = decoder_layers
self.decoder_attention_heads = decoder_attention_heads
self.max_position_embeddings = max_position_embeddings
self.init_std = init_std # Normal(0, this parameter)
self.activation_function = activation_function
self.decoder = DecoderConfig(vocab_size=tgt_vocab_size, bos_token_id=eos_token_id)
if "decoder" in common_kwargs:
del common_kwargs["decoder"]
self.scale_embedding = scale_embedding # scale factor will be sqrt(d_model) if True
# 3 Types of Dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.dropout = dropout
self.use_cache = use_cache
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
decoder_start_token_id=decoder_start_token_id,
is_encoder_decoder=is_encoder_decoder,
tie_word_embeddings=tie_word_embeddings,
forced_eos_token_id=forced_eos_token_id,
max_length=max_length,
num_beams=num_beams,
length_penalty=length_penalty,
early_stopping=early_stopping,
**common_kwargs,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fsmt/convert_fsmt_original_pytorch_checkpoint_to_pytorch.py
|
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Note: if you intend to run this script make sure you look under scripts/fsmt/
# to locate the appropriate script to do the work correctly. There is a set of scripts to:
# - download and prepare data and run the conversion script
# - perform eval to get the best hparam into the config
# - generate model_cards - useful if you have multiple models from the same paper
import argparse
import json
import os
import re
from collections import OrderedDict
from os.path import basename, dirname
import fairseq
import torch
from fairseq import hub_utils
from fairseq.data.dictionary import Dictionary
from transformers import FSMTConfig, FSMTForConditionalGeneration
from transformers.models.fsmt.tokenization_fsmt import VOCAB_FILES_NAMES
from transformers.tokenization_utils_base import TOKENIZER_CONFIG_FILE
from transformers.utils import WEIGHTS_NAME, logging
logging.set_verbosity_warning()
json_indent = 2
# based on the results of a search on a range of `num_beams`, `length_penalty` and `early_stopping`
# values against wmt19 test data to obtain the best BLEU scores, we will use the following defaults:
#
# * `num_beams`: 5 (higher scores better, but requires more memory/is slower, can be adjusted by users)
# * `early_stopping`: `False` consistently scored better
# * `length_penalty` varied, so will assign the best one depending on the model
best_score_hparams = {
# fairseq:
"wmt19-ru-en": {"length_penalty": 1.1},
"wmt19-en-ru": {"length_penalty": 1.15},
"wmt19-en-de": {"length_penalty": 1.0},
"wmt19-de-en": {"length_penalty": 1.1},
# allenai:
"wmt16-en-de-dist-12-1": {"length_penalty": 0.6},
"wmt16-en-de-dist-6-1": {"length_penalty": 0.6},
"wmt16-en-de-12-1": {"length_penalty": 0.8},
"wmt19-de-en-6-6-base": {"length_penalty": 0.6},
"wmt19-de-en-6-6-big": {"length_penalty": 0.6},
}
# this remaps the different models to their organization names
org_names = {}
for m in ["wmt19-ru-en", "wmt19-en-ru", "wmt19-en-de", "wmt19-de-en"]:
org_names[m] = "facebook"
for m in [
"wmt16-en-de-dist-12-1",
"wmt16-en-de-dist-6-1",
"wmt16-en-de-12-1",
"wmt19-de-en-6-6-base",
"wmt19-de-en-6-6-big",
]:
org_names[m] = "allenai"
def rewrite_dict_keys(d):
# (1) remove word breaking symbol, (2) add word ending symbol where the word is not broken up,
# e.g.: d = {'le@@': 5, 'tt@@': 6, 'er': 7} => {'le': 5, 'tt': 6, 'er</w>': 7}
d2 = dict((re.sub(r"@@$", "", k), v) if k.endswith("@@") else (re.sub(r"$", "</w>", k), v) for k, v in d.items())
keep_keys = "<s> <pad> </s> <unk>".split()
# restore the special tokens
for k in keep_keys:
del d2[f"{k}</w>"]
d2[k] = d[k] # restore
return d2
def convert_fsmt_checkpoint_to_pytorch(fsmt_checkpoint_path, pytorch_dump_folder_path):
# prep
assert os.path.exists(fsmt_checkpoint_path)
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
print(f"Writing results to {pytorch_dump_folder_path}")
# handle various types of models
checkpoint_file = basename(fsmt_checkpoint_path)
fsmt_folder_path = dirname(fsmt_checkpoint_path)
cls = fairseq.model_parallel.models.transformer.ModelParallelTransformerModel
models = cls.hub_models()
kwargs = {"bpe": "fastbpe", "tokenizer": "moses"}
data_name_or_path = "."
# note: since the model dump is old, fairseq has upgraded its model some
# time later, and it does a whole lot of rewrites and splits on the saved
# weights, therefore we can't use torch.load() directly on the model file.
# see: upgrade_state_dict(state_dict) in fairseq_model.py
print(f"using checkpoint {checkpoint_file}")
chkpt = hub_utils.from_pretrained(
fsmt_folder_path, checkpoint_file, data_name_or_path, archive_map=models, **kwargs
)
args = vars(chkpt["args"]["model"])
src_lang = args["source_lang"]
tgt_lang = args["target_lang"]
data_root = dirname(pytorch_dump_folder_path)
model_dir = basename(pytorch_dump_folder_path)
# dicts
src_dict_file = os.path.join(fsmt_folder_path, f"dict.{src_lang}.txt")
tgt_dict_file = os.path.join(fsmt_folder_path, f"dict.{tgt_lang}.txt")
src_dict = Dictionary.load(src_dict_file)
src_vocab = rewrite_dict_keys(src_dict.indices)
src_vocab_size = len(src_vocab)
src_vocab_file = os.path.join(pytorch_dump_folder_path, "vocab-src.json")
print(f"Generating {src_vocab_file} of {src_vocab_size} of {src_lang} records")
with open(src_vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(src_vocab, ensure_ascii=False, indent=json_indent))
# detect whether this is a do_lower_case situation, which can be derived by checking whether we
# have at least one uppercase letter in the source vocab
do_lower_case = True
for k in src_vocab.keys():
if not k.islower():
do_lower_case = False
break
tgt_dict = Dictionary.load(tgt_dict_file)
tgt_vocab = rewrite_dict_keys(tgt_dict.indices)
tgt_vocab_size = len(tgt_vocab)
tgt_vocab_file = os.path.join(pytorch_dump_folder_path, "vocab-tgt.json")
print(f"Generating {tgt_vocab_file} of {tgt_vocab_size} of {tgt_lang} records")
with open(tgt_vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(tgt_vocab, ensure_ascii=False, indent=json_indent))
# merges_file (bpecodes)
merges_file = os.path.join(pytorch_dump_folder_path, VOCAB_FILES_NAMES["merges_file"])
for fn in ["bpecodes", "code"]: # older fairseq called the merges file "code"
fsmt_merges_file = os.path.join(fsmt_folder_path, fn)
if os.path.exists(fsmt_merges_file):
break
with open(fsmt_merges_file, encoding="utf-8") as fin:
merges = fin.read()
merges = re.sub(r" \d+$", "", merges, 0, re.M) # remove frequency number
print(f"Generating {merges_file}")
with open(merges_file, "w", encoding="utf-8") as fout:
fout.write(merges)
# model config
fsmt_model_config_file = os.path.join(pytorch_dump_folder_path, "config.json")
# validate bpe/tokenizer config, as currently it's hardcoded to moses+fastbpe -
# may have to modify the tokenizer if a different type is used by a future model
assert args["bpe"] == "fastbpe", f"need to extend tokenizer to support bpe={args['bpe']}"
assert args["tokenizer"] == "moses", f"need to extend tokenizer to support bpe={args['tokenizer']}"
model_conf = {
"architectures": ["FSMTForConditionalGeneration"],
"model_type": "fsmt",
"activation_dropout": args["activation_dropout"],
"activation_function": "relu",
"attention_dropout": args["attention_dropout"],
"d_model": args["decoder_embed_dim"],
"dropout": args["dropout"],
"init_std": 0.02,
"max_position_embeddings": args["max_source_positions"],
"num_hidden_layers": args["encoder_layers"],
"src_vocab_size": src_vocab_size,
"tgt_vocab_size": tgt_vocab_size,
"langs": [src_lang, tgt_lang],
"encoder_attention_heads": args["encoder_attention_heads"],
"encoder_ffn_dim": args["encoder_ffn_embed_dim"],
"encoder_layerdrop": args["encoder_layerdrop"],
"encoder_layers": args["encoder_layers"],
"decoder_attention_heads": args["decoder_attention_heads"],
"decoder_ffn_dim": args["decoder_ffn_embed_dim"],
"decoder_layerdrop": args["decoder_layerdrop"],
"decoder_layers": args["decoder_layers"],
"bos_token_id": 0,
"pad_token_id": 1,
"eos_token_id": 2,
"is_encoder_decoder": True,
"scale_embedding": not args["no_scale_embedding"],
"tie_word_embeddings": args["share_all_embeddings"],
}
# good hparam defaults to start with
model_conf["num_beams"] = 5
model_conf["early_stopping"] = False
if model_dir in best_score_hparams and "length_penalty" in best_score_hparams[model_dir]:
model_conf["length_penalty"] = best_score_hparams[model_dir]["length_penalty"]
else:
model_conf["length_penalty"] = 1.0
print(f"Generating {fsmt_model_config_file}")
with open(fsmt_model_config_file, "w", encoding="utf-8") as f:
f.write(json.dumps(model_conf, ensure_ascii=False, indent=json_indent))
# tokenizer config
fsmt_tokenizer_config_file = os.path.join(pytorch_dump_folder_path, TOKENIZER_CONFIG_FILE)
tokenizer_conf = {
"langs": [src_lang, tgt_lang],
"model_max_length": 1024,
"do_lower_case": do_lower_case,
}
print(f"Generating {fsmt_tokenizer_config_file}")
with open(fsmt_tokenizer_config_file, "w", encoding="utf-8") as f:
f.write(json.dumps(tokenizer_conf, ensure_ascii=False, indent=json_indent))
# model
model = chkpt["models"][0]
model_state_dict = model.state_dict()
# rename keys to start with 'model.'
model_state_dict = OrderedDict(("model." + k, v) for k, v in model_state_dict.items())
# remove unneeded keys
ignore_keys = [
"model.model",
"model.encoder.version",
"model.decoder.version",
"model.encoder_embed_tokens.weight",
"model.decoder_embed_tokens.weight",
"model.encoder.embed_positions._float_tensor",
"model.decoder.embed_positions._float_tensor",
]
for k in ignore_keys:
model_state_dict.pop(k, None)
config = FSMTConfig.from_pretrained(pytorch_dump_folder_path)
model_new = FSMTForConditionalGeneration(config)
# check that it loads ok
model_new.load_state_dict(model_state_dict, strict=False)
# save
pytorch_weights_dump_path = os.path.join(pytorch_dump_folder_path, WEIGHTS_NAME)
print(f"Generating {pytorch_weights_dump_path}")
torch.save(model_state_dict, pytorch_weights_dump_path)
print("Conversion is done!")
print("\nLast step is to upload the files to s3")
print(f"cd {data_root}")
print(f"transformers-cli upload {model_dir}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--fsmt_checkpoint_path",
default=None,
type=str,
required=True,
help=(
"Path to the official PyTorch checkpoint file which is expected to reside in the dump dir with dicts,"
" bpecodes, etc."
),
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
args = parser.parse_args()
convert_fsmt_checkpoint_to_pytorch(args.fsmt_checkpoint_path, args.pytorch_dump_folder_path)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fsmt/__init__.py
|
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_fsmt": ["FSMT_PRETRAINED_CONFIG_ARCHIVE_MAP", "FSMTConfig"],
"tokenization_fsmt": ["FSMTTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_fsmt"] = ["FSMTForConditionalGeneration", "FSMTModel", "PretrainedFSMTModel"]
if TYPE_CHECKING:
from .configuration_fsmt import FSMT_PRETRAINED_CONFIG_ARCHIVE_MAP, FSMTConfig
from .tokenization_fsmt import FSMTTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_fsmt import FSMTForConditionalGeneration, FSMTModel, PretrainedFSMTModel
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/decision_transformer/modeling_decision_transformer.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Team The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch DecisionTransformer model."""
import math
import os
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.cuda.amp import autocast
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithPastAndCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_conv1d_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_decision_transformer import DecisionTransformerConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "edbeeching/decision-transformer-gym-hopper-medium"
_CONFIG_FOR_DOC = "DecisionTransformerConfig"
from ..deprecated._archive_maps import DECISION_TRANSFORMER_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Copied from transformers.models.gpt2.modeling_gpt2.load_tf_weights_in_gpt2
def load_tf_weights_in_gpt2(model, config, gpt2_checkpoint_path):
"""Load tf checkpoints in a pytorch model"""
try:
import re
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(gpt2_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array.squeeze())
for name, array in zip(names, arrays):
name = name[6:] # skip "model/"
name = name.split("/")
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "w" or scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "wpe" or scope_names[0] == "wte":
pointer = getattr(pointer, scope_names[0])
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
try:
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except ValueError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
# Copied from transformers.models.gpt2.modeling_gpt2.GPT2Attention with GPT2->DecisionTransformerGPT2
class DecisionTransformerGPT2Attention(nn.Module):
def __init__(self, config, is_cross_attention=False, layer_idx=None):
super().__init__()
self.config = config
max_positions = config.max_position_embeddings
self.register_buffer(
"bias",
torch.tril(torch.ones((max_positions, max_positions), dtype=torch.bool)).view(
1, 1, max_positions, max_positions
),
persistent=False,
)
self.register_buffer("masked_bias", torch.tensor(-1e4), persistent=False)
self.embed_dim = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_heads
self.split_size = self.embed_dim
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"`embed_dim` must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {self.num_heads})."
)
self.scale_attn_weights = config.scale_attn_weights
self.is_cross_attention = is_cross_attention
# Layer-wise attention scaling, reordering, and upcasting
self.scale_attn_by_inverse_layer_idx = config.scale_attn_by_inverse_layer_idx
self.layer_idx = layer_idx
self.reorder_and_upcast_attn = config.reorder_and_upcast_attn
if self.is_cross_attention:
self.c_attn = Conv1D(2 * self.embed_dim, self.embed_dim)
self.q_attn = Conv1D(self.embed_dim, self.embed_dim)
else:
self.c_attn = Conv1D(3 * self.embed_dim, self.embed_dim)
self.c_proj = Conv1D(self.embed_dim, self.embed_dim)
self.attn_dropout = nn.Dropout(config.attn_pdrop)
self.resid_dropout = nn.Dropout(config.resid_pdrop)
self.is_causal = True
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(heads, self.num_heads, self.head_dim, self.pruned_heads)
index_attn = torch.cat([index, index + self.split_size, index + (2 * self.split_size)])
# Prune conv1d layers
self.c_attn = prune_conv1d_layer(self.c_attn, index_attn, dim=1)
self.c_proj = prune_conv1d_layer(self.c_proj, index, dim=0)
# Update hyper params
self.split_size = (self.split_size // self.num_heads) * (self.num_heads - len(heads))
self.num_heads = self.num_heads - len(heads)
self.pruned_heads = self.pruned_heads.union(heads)
def _attn(self, query, key, value, attention_mask=None, head_mask=None):
attn_weights = torch.matmul(query, key.transpose(-1, -2))
if self.scale_attn_weights:
attn_weights = attn_weights / torch.full(
[], value.size(-1) ** 0.5, dtype=attn_weights.dtype, device=attn_weights.device
)
# Layer-wise attention scaling
if self.scale_attn_by_inverse_layer_idx:
attn_weights = attn_weights / float(self.layer_idx + 1)
if not self.is_cross_attention:
# if only "normal" attention layer implements causal mask
query_length, key_length = query.size(-2), key.size(-2)
causal_mask = self.bias[:, :, key_length - query_length : key_length, :key_length]
mask_value = torch.finfo(attn_weights.dtype).min
# Need to be a tensor, otherwise we get error: `RuntimeError: expected scalar type float but found double`.
# Need to be on the same device, otherwise `RuntimeError: ..., x and y to be on the same device`
mask_value = torch.full([], mask_value, dtype=attn_weights.dtype, device=attn_weights.device)
attn_weights = torch.where(causal_mask, attn_weights.to(attn_weights.dtype), mask_value)
if attention_mask is not None:
# Apply the attention mask
attn_weights = attn_weights + attention_mask
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
# Downcast (if necessary) back to V's dtype (if in mixed-precision) -- No-Op otherwise
attn_weights = attn_weights.type(value.dtype)
attn_weights = self.attn_dropout(attn_weights)
# Mask heads if we want to
if head_mask is not None:
attn_weights = attn_weights * head_mask
attn_output = torch.matmul(attn_weights, value)
return attn_output, attn_weights
def _upcast_and_reordered_attn(self, query, key, value, attention_mask=None, head_mask=None):
# Use `torch.baddbmm` (a bit more efficient w/ alpha param for scaling -- from Megatron-LM)
bsz, num_heads, q_seq_len, dk = query.size()
_, _, k_seq_len, _ = key.size()
# Preallocate attn_weights for `baddbmm`
attn_weights = torch.empty(bsz * num_heads, q_seq_len, k_seq_len, dtype=torch.float32, device=query.device)
# Compute Scale Factor
scale_factor = 1.0
if self.scale_attn_weights:
scale_factor /= float(value.size(-1)) ** 0.5
if self.scale_attn_by_inverse_layer_idx:
scale_factor /= float(self.layer_idx + 1)
# Upcast (turn off autocast) and reorder (Scale K by 1 / root(dk))
with autocast(enabled=False):
q, k = query.reshape(-1, q_seq_len, dk), key.transpose(-1, -2).reshape(-1, dk, k_seq_len)
attn_weights = torch.baddbmm(attn_weights, q.float(), k.float(), beta=0, alpha=scale_factor)
attn_weights = attn_weights.reshape(bsz, num_heads, q_seq_len, k_seq_len)
if not self.is_cross_attention:
# if only "normal" attention layer implements causal mask
query_length, key_length = query.size(-2), key.size(-2)
causal_mask = self.bias[:, :, key_length - query_length : key_length, :key_length]
mask_value = torch.finfo(attn_weights.dtype).min
# Need to be a tensor, otherwise we get error: `RuntimeError: expected scalar type float but found double`.
# Need to be on the same device, otherwise `RuntimeError: ..., x and y to be on the same device`
mask_value = torch.tensor(mask_value, dtype=attn_weights.dtype).to(attn_weights.device)
attn_weights = torch.where(causal_mask, attn_weights, mask_value)
if attention_mask is not None:
# Apply the attention mask
attn_weights = attn_weights + attention_mask
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
# Downcast (if necessary) back to V's dtype (if in mixed-precision) -- No-Op if otherwise
if attn_weights.dtype != torch.float32:
raise RuntimeError("Error with upcasting, attn_weights does not have dtype torch.float32")
attn_weights = attn_weights.type(value.dtype)
attn_weights = self.attn_dropout(attn_weights)
# Mask heads if we want to
if head_mask is not None:
attn_weights = attn_weights * head_mask
attn_output = torch.matmul(attn_weights, value)
return attn_output, attn_weights
def _split_heads(self, tensor, num_heads, attn_head_size):
"""
Splits hidden_size dim into attn_head_size and num_heads
"""
new_shape = tensor.size()[:-1] + (num_heads, attn_head_size)
tensor = tensor.view(new_shape)
return tensor.permute(0, 2, 1, 3) # (batch, head, seq_length, head_features)
def _merge_heads(self, tensor, num_heads, attn_head_size):
"""
Merges attn_head_size dim and num_attn_heads dim into hidden_size
"""
tensor = tensor.permute(0, 2, 1, 3).contiguous()
new_shape = tensor.size()[:-2] + (num_heads * attn_head_size,)
return tensor.view(new_shape)
def forward(
self,
hidden_states: Optional[Tuple[torch.FloatTensor]],
layer_past: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = False,
output_attentions: Optional[bool] = False,
) -> Tuple[Union[torch.Tensor, Tuple[torch.Tensor]], ...]:
if encoder_hidden_states is not None:
if not hasattr(self, "q_attn"):
raise ValueError(
"If class is used as cross attention, the weights `q_attn` have to be defined. "
"Please make sure to instantiate class with `DecisionTransformerGPT2Attention(..., is_cross_attention=True)`."
)
query = self.q_attn(hidden_states)
key, value = self.c_attn(encoder_hidden_states).split(self.split_size, dim=2)
attention_mask = encoder_attention_mask
else:
query, key, value = self.c_attn(hidden_states).split(self.split_size, dim=2)
query = self._split_heads(query, self.num_heads, self.head_dim)
key = self._split_heads(key, self.num_heads, self.head_dim)
value = self._split_heads(value, self.num_heads, self.head_dim)
if layer_past is not None:
past_key, past_value = layer_past
key = torch.cat((past_key, key), dim=-2)
value = torch.cat((past_value, value), dim=-2)
if use_cache is True:
present = (key, value)
else:
present = None
if self.reorder_and_upcast_attn:
attn_output, attn_weights = self._upcast_and_reordered_attn(query, key, value, attention_mask, head_mask)
else:
attn_output, attn_weights = self._attn(query, key, value, attention_mask, head_mask)
attn_output = self._merge_heads(attn_output, self.num_heads, self.head_dim)
attn_output = self.c_proj(attn_output)
attn_output = self.resid_dropout(attn_output)
outputs = (attn_output, present)
if output_attentions:
outputs += (attn_weights,)
return outputs # a, present, (attentions)
# Copied from transformers.models.gpt2.modeling_gpt2.GPT2MLP with GPT2->DecisionTransformerGPT2
class DecisionTransformerGPT2MLP(nn.Module):
def __init__(self, intermediate_size, config):
super().__init__()
embed_dim = config.hidden_size
self.c_fc = Conv1D(intermediate_size, embed_dim)
self.c_proj = Conv1D(embed_dim, intermediate_size)
self.act = ACT2FN[config.activation_function]
self.dropout = nn.Dropout(config.resid_pdrop)
def forward(self, hidden_states: Optional[Tuple[torch.FloatTensor]]) -> torch.FloatTensor:
hidden_states = self.c_fc(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.c_proj(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.gpt2.modeling_gpt2.GPT2Block with GPT2->DecisionTransformerGPT2
class DecisionTransformerGPT2Block(nn.Module):
# Ignore copy
def __init__(self, config, layer_idx=None):
super().__init__()
hidden_size = config.hidden_size
inner_dim = config.n_inner if config.n_inner is not None else 4 * hidden_size
self.ln_1 = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.attn = DecisionTransformerGPT2Attention(config, layer_idx=layer_idx)
self.ln_2 = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
if config.add_cross_attention:
self.crossattention = DecisionTransformerGPT2Attention(
config, is_cross_attention=True, layer_idx=layer_idx
)
self.ln_cross_attn = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.mlp = DecisionTransformerGPT2MLP(inner_dim, config)
def forward(
self,
hidden_states: Optional[Tuple[torch.FloatTensor]],
layer_past: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = False,
output_attentions: Optional[bool] = False,
) -> Union[Tuple[torch.Tensor], Optional[Tuple[torch.Tensor, Tuple[torch.FloatTensor, ...]]]]:
residual = hidden_states
hidden_states = self.ln_1(hidden_states)
attn_outputs = self.attn(
hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0] # output_attn: a, present, (attentions)
outputs = attn_outputs[1:]
# residual connection
hidden_states = attn_output + residual
if encoder_hidden_states is not None:
# add one self-attention block for cross-attention
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with "
"cross-attention layers by setting `config.add_cross_attention=True`"
)
residual = hidden_states
hidden_states = self.ln_cross_attn(hidden_states)
cross_attn_outputs = self.crossattention(
hidden_states,
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
)
attn_output = cross_attn_outputs[0]
# residual connection
hidden_states = residual + attn_output
outputs = outputs + cross_attn_outputs[2:] # add cross attentions if we output attention weights
residual = hidden_states
hidden_states = self.ln_2(hidden_states)
feed_forward_hidden_states = self.mlp(hidden_states)
# residual connection
hidden_states = residual + feed_forward_hidden_states
if use_cache:
outputs = (hidden_states,) + outputs
else:
outputs = (hidden_states,) + outputs[1:]
return outputs # hidden_states, present, (attentions, cross_attentions)
class DecisionTransformerGPT2PreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DecisionTransformerConfig
load_tf_weights = load_tf_weights_in_gpt2
base_model_prefix = "transformer"
is_parallelizable = True
supports_gradient_checkpointing = True
def __init__(self, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear, Conv1D)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
# Reinitialize selected weights subject to the OpenAI GPT-2 Paper Scheme:
# > A modified initialization which accounts for the accumulation on the residual path with model depth. Scale
# > the weights of residual layers at initialization by a factor of 1/√N where N is the # of residual layers.
# > -- GPT-2 :: https://openai.com/blog/better-language-models/
#
# Reference (Megatron-LM): https://github.com/NVIDIA/Megatron-LM/blob/main/megatron/model/gpt_model.py
for name, p in module.named_parameters():
if "c_proj" in name and "weight" in name:
# Special Scaled Initialization --> There are 2 Layer Norms per Transformer Block
p.data.normal_(mean=0.0, std=(self.config.initializer_range / math.sqrt(2 * self.config.n_layer)))
class DecisionTransformerGPT2Model(DecisionTransformerGPT2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.embed_dim = config.hidden_size
self.wte = nn.Embedding(config.vocab_size, self.embed_dim)
self.wpe = nn.Embedding(config.max_position_embeddings, self.embed_dim)
self.drop = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList(
[DecisionTransformerGPT2Block(config, layer_idx=i) for i in range(config.num_hidden_layers)]
)
self.ln_f = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_epsilon)
# Model parallel
self.model_parallel = False
self.device_map = None
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.wte
def set_input_embeddings(self, new_embeddings):
self.wte = new_embeddings
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.Tensor]]] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPastAndCrossAttentions]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
batch_size = input_ids.shape[0]
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size = inputs_embeds.shape[0]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, input_shape[-1])
if past_key_values is None:
past_length = 0
past_key_values = tuple([None] * len(self.h))
else:
past_length = past_key_values[0][0].size(-2)
if position_ids is None:
position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0)
# Attention mask.
if attention_mask is not None:
if batch_size <= 0:
raise ValueError("batch_size has to be defined and > 0")
attention_mask = attention_mask.view(batch_size, -1)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask[:, None, None, :]
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=self.dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * torch.finfo(self.dtype).min
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.add_cross_attention and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# head_mask has shape n_layer x batch x n_heads x N x N
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.wte(input_ids)
position_embeds = self.wpe(position_ids)
hidden_states = inputs_embeds + position_embeds
if token_type_ids is not None:
token_type_embeds = self.wte(token_type_ids)
hidden_states = hidden_states + token_type_embeds
hidden_states = self.drop(hidden_states)
output_shape = (-1,) + input_shape[1:] + (hidden_states.size(-1),)
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
presents = () if use_cache else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
all_hidden_states = () if output_hidden_states else None
for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)):
# Model parallel
if self.model_parallel:
torch.cuda.set_device(hidden_states.device)
# Ensure layer_past is on same device as hidden_states (might not be correct)
if layer_past is not None:
layer_past = tuple(past_state.to(hidden_states.device) for past_state in layer_past)
# Ensure that attention_mask is always on the same device as hidden_states
if attention_mask is not None:
attention_mask = attention_mask.to(hidden_states.device)
if isinstance(head_mask, torch.Tensor):
head_mask = head_mask.to(hidden_states.device)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
outputs = self._gradient_checkpointing_func(
block.__call__,
hidden_states,
None,
attention_mask,
head_mask[i],
encoder_hidden_states,
encoder_attention_mask,
use_cache,
output_attentions,
)
else:
outputs = block(
hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask[i],
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states = outputs[0]
if use_cache is True:
presents = presents + (outputs[1],)
if output_attentions:
all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (outputs[3 if use_cache else 2],)
# Model Parallel: If it's the last layer for that device, put things on the next device
if self.model_parallel:
for k, v in self.device_map.items():
if i == v[-1] and "cuda:" + str(k) != self.last_device:
hidden_states = hidden_states.to("cuda:" + str(k + 1))
hidden_states = self.ln_f(hidden_states)
hidden_states = hidden_states.view(output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, presents, all_hidden_states, all_self_attentions, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
@dataclass
class DecisionTransformerOutput(ModelOutput):
"""
Base class for model's outputs that also contains a pooling of the last hidden states.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
state_preds (`torch.FloatTensor` of shape `(batch_size, sequence_length, state_dim)`):
Environment state predictions
action_preds (`torch.FloatTensor` of shape `(batch_size, sequence_length, action_dim)`):
Model action predictions
return_preds (`torch.FloatTensor` of shape `(batch_size, sequence_length, 1)`):
Predicted returns for each state
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
state_preds: torch.FloatTensor = None
action_preds: torch.FloatTensor = None
return_preds: torch.FloatTensor = None
hidden_states: torch.FloatTensor = None
attentions: torch.FloatTensor = None
last_hidden_state: torch.FloatTensor = None
class DecisionTransformerPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DecisionTransformerConfig
base_model_prefix = "decision_transformer"
main_input_name = "states"
supports_gradient_checkpointing = False
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
DECISION_TRANSFORMER_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`~DecisionTransformerConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DECISION_TRANSFORMER_INPUTS_DOCSTRING = r"""
Args:
states (`torch.FloatTensor` of shape `(batch_size, episode_length, state_dim)`):
The states for each step in the trajectory
actions (`torch.FloatTensor` of shape `(batch_size, episode_length, act_dim)`):
The actions taken by the "expert" policy for the current state, these are masked for auto regressive
prediction
rewards (`torch.FloatTensor` of shape `(batch_size, episode_length, 1)`):
The rewards for each state, action
returns_to_go (`torch.FloatTensor` of shape `(batch_size, episode_length, 1)`):
The returns for each state in the trajectory
timesteps (`torch.LongTensor` of shape `(batch_size, episode_length)`):
The timestep for each step in the trajectory
attention_mask (`torch.FloatTensor` of shape `(batch_size, episode_length)`):
Masking, used to mask the actions when performing autoregressive prediction
"""
@add_start_docstrings("The Decision Transformer Model", DECISION_TRANSFORMER_START_DOCSTRING)
class DecisionTransformerModel(DecisionTransformerPreTrainedModel):
"""
The model builds upon the GPT2 architecture to perform autoregressive prediction of actions in an offline RL
setting. Refer to the paper for more details: https://arxiv.org/abs/2106.01345
"""
def __init__(self, config):
super().__init__(config)
self.config = config
self.hidden_size = config.hidden_size
# note: the only difference between this GPT2Model and the default Huggingface version
# is that the positional embeddings are removed (since we'll add those ourselves)
self.encoder = DecisionTransformerGPT2Model(config)
self.embed_timestep = nn.Embedding(config.max_ep_len, config.hidden_size)
self.embed_return = torch.nn.Linear(1, config.hidden_size)
self.embed_state = torch.nn.Linear(config.state_dim, config.hidden_size)
self.embed_action = torch.nn.Linear(config.act_dim, config.hidden_size)
self.embed_ln = nn.LayerNorm(config.hidden_size)
# note: we don't predict states or returns for the paper
self.predict_state = torch.nn.Linear(config.hidden_size, config.state_dim)
self.predict_action = nn.Sequential(
*([nn.Linear(config.hidden_size, config.act_dim)] + ([nn.Tanh()] if config.action_tanh else []))
)
self.predict_return = torch.nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DECISION_TRANSFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=DecisionTransformerOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
states: Optional[torch.FloatTensor] = None,
actions: Optional[torch.FloatTensor] = None,
rewards: Optional[torch.FloatTensor] = None,
returns_to_go: Optional[torch.FloatTensor] = None,
timesteps: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
output_hidden_states: Optional[bool] = None,
output_attentions: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], DecisionTransformerOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import DecisionTransformerModel
>>> import torch
>>> model = DecisionTransformerModel.from_pretrained("edbeeching/decision-transformer-gym-hopper-medium")
>>> # evaluation
>>> model = model.to(device)
>>> model.eval()
>>> env = gym.make("Hopper-v3")
>>> state_dim = env.observation_space.shape[0]
>>> act_dim = env.action_space.shape[0]
>>> state = env.reset()
>>> states = torch.from_numpy(state).reshape(1, 1, state_dim).to(device=device, dtype=torch.float32)
>>> actions = torch.zeros((1, 1, act_dim), device=device, dtype=torch.float32)
>>> rewards = torch.zeros(1, 1, device=device, dtype=torch.float32)
>>> target_return = torch.tensor(TARGET_RETURN, dtype=torch.float32).reshape(1, 1)
>>> timesteps = torch.tensor(0, device=device, dtype=torch.long).reshape(1, 1)
>>> attention_mask = torch.zeros(1, 1, device=device, dtype=torch.float32)
>>> # forward pass
>>> with torch.no_grad():
... state_preds, action_preds, return_preds = model(
... states=states,
... actions=actions,
... rewards=rewards,
... returns_to_go=target_return,
... timesteps=timesteps,
... attention_mask=attention_mask,
... return_dict=False,
... )
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
batch_size, seq_length = states.shape[0], states.shape[1]
if attention_mask is None:
# attention mask for GPT: 1 if can be attended to, 0 if not
attention_mask = torch.ones((batch_size, seq_length), dtype=torch.long)
# embed each modality with a different head
state_embeddings = self.embed_state(states)
action_embeddings = self.embed_action(actions)
returns_embeddings = self.embed_return(returns_to_go)
time_embeddings = self.embed_timestep(timesteps)
# time embeddings are treated similar to positional embeddings
state_embeddings = state_embeddings + time_embeddings
action_embeddings = action_embeddings + time_embeddings
returns_embeddings = returns_embeddings + time_embeddings
# this makes the sequence look like (R_1, s_1, a_1, R_2, s_2, a_2, ...)
# which works nice in an autoregressive sense since states predict actions
stacked_inputs = (
torch.stack((returns_embeddings, state_embeddings, action_embeddings), dim=1)
.permute(0, 2, 1, 3)
.reshape(batch_size, 3 * seq_length, self.hidden_size)
)
stacked_inputs = self.embed_ln(stacked_inputs)
# to make the attention mask fit the stacked inputs, have to stack it as well
stacked_attention_mask = (
torch.stack((attention_mask, attention_mask, attention_mask), dim=1)
.permute(0, 2, 1)
.reshape(batch_size, 3 * seq_length)
)
device = stacked_inputs.device
# we feed in the input embeddings (not word indices as in NLP) to the model
encoder_outputs = self.encoder(
inputs_embeds=stacked_inputs,
attention_mask=stacked_attention_mask,
position_ids=torch.zeros(stacked_attention_mask.shape, device=device, dtype=torch.long),
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
x = encoder_outputs[0]
# reshape x so that the second dimension corresponds to the original
# returns (0), states (1), or actions (2); i.e. x[:,1,t] is the token for s_t
x = x.reshape(batch_size, seq_length, 3, self.hidden_size).permute(0, 2, 1, 3)
# get predictions
return_preds = self.predict_return(x[:, 2]) # predict next return given state and action
state_preds = self.predict_state(x[:, 2]) # predict next state given state and action
action_preds = self.predict_action(x[:, 1]) # predict next action given state
if not return_dict:
return (state_preds, action_preds, return_preds)
return DecisionTransformerOutput(
last_hidden_state=encoder_outputs.last_hidden_state,
state_preds=state_preds,
action_preds=action_preds,
return_preds=return_preds,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/decision_transformer/__init__.py
|
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_decision_transformer": [
"DECISION_TRANSFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"DecisionTransformerConfig",
],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_decision_transformer"] = [
"DECISION_TRANSFORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"DecisionTransformerGPT2Model",
"DecisionTransformerGPT2PreTrainedModel",
"DecisionTransformerModel",
"DecisionTransformerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_decision_transformer import (
DECISION_TRANSFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP,
DecisionTransformerConfig,
)
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_decision_transformer import (
DECISION_TRANSFORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
DecisionTransformerGPT2Model,
DecisionTransformerGPT2PreTrainedModel,
DecisionTransformerModel,
DecisionTransformerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/decision_transformer/configuration_decision_transformer.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Team and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Decision Transformer model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import DECISION_TRANSFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class DecisionTransformerConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`DecisionTransformerModel`]. It is used to
instantiate a Decision Transformer model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the standard
DecisionTransformer architecture. Many of the config options are used to instatiate the GPT2 model that is used as
part of the architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
state_dim (`int`, *optional*, defaults to 17):
The state size for the RL environment
act_dim (`int`, *optional*, defaults to 4):
The size of the output action space
hidden_size (`int`, *optional*, defaults to 128):
The size of the hidden layers
max_ep_len (`int`, *optional*, defaults to 4096):
The maximum length of an episode in the environment
action_tanh (`bool`, *optional*, defaults to True):
Whether to use a tanh activation on action prediction
vocab_size (`int`, *optional*, defaults to 50257):
Vocabulary size of the GPT-2 model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`DecisionTransformerModel`].
n_positions (`int`, *optional*, defaults to 1024):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
n_layer (`int`, *optional*, defaults to 3):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 1):
Number of attention heads for each attention layer in the Transformer encoder.
n_inner (`int`, *optional*):
Dimensionality of the inner feed-forward layers. If unset, will default to 4 times `n_embd`.
activation_function (`str`, *optional*, defaults to `"gelu"`):
Activation function, to be selected in the list `["relu", "silu", "gelu", "tanh", "gelu_new"]`.
resid_pdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
embd_pdrop (`int`, *optional*, defaults to 0.1):
The dropout ratio for the embeddings.
attn_pdrop (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-5):
The epsilon to use in the layer normalization layers.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
scale_attn_weights (`bool`, *optional*, defaults to `True`):
Scale attention weights by dividing by sqrt(hidden_size)..
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
scale_attn_by_inverse_layer_idx (`bool`, *optional*, defaults to `False`):
Whether to additionally scale attention weights by `1 / layer_idx + 1`.
reorder_and_upcast_attn (`bool`, *optional*, defaults to `False`):
Whether to scale keys (K) prior to computing attention (dot-product) and upcast attention
dot-product/softmax to float() when training with mixed precision.
Example:
```python
>>> from transformers import DecisionTransformerConfig, DecisionTransformerModel
>>> # Initializing a DecisionTransformer configuration
>>> configuration = DecisionTransformerConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = DecisionTransformerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "decision_transformer"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {
"max_position_embeddings": "n_positions",
"num_attention_heads": "n_head",
"num_hidden_layers": "n_layer",
}
def __init__(
self,
state_dim=17,
act_dim=4,
hidden_size=128,
max_ep_len=4096,
action_tanh=True,
vocab_size=1,
n_positions=1024,
n_layer=3,
n_head=1,
n_inner=None,
activation_function="relu",
resid_pdrop=0.1,
embd_pdrop=0.1,
attn_pdrop=0.1,
layer_norm_epsilon=1e-5,
initializer_range=0.02,
scale_attn_weights=True,
use_cache=True,
bos_token_id=50256,
eos_token_id=50256,
scale_attn_by_inverse_layer_idx=False,
reorder_and_upcast_attn=False,
**kwargs,
):
self.state_dim = state_dim
self.act_dim = act_dim
self.hidden_size = hidden_size
self.max_ep_len = max_ep_len
self.action_tanh = action_tanh
self.vocab_size = vocab_size
self.n_positions = n_positions
self.n_layer = n_layer
self.n_head = n_head
self.n_inner = n_inner
self.activation_function = activation_function
self.resid_pdrop = resid_pdrop
self.embd_pdrop = embd_pdrop
self.attn_pdrop = attn_pdrop
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.scale_attn_weights = scale_attn_weights
self.use_cache = use_cache
self.scale_attn_by_inverse_layer_idx = scale_attn_by_inverse_layer_idx
self.reorder_and_upcast_attn = reorder_and_upcast_attn
self.bos_token_id = bos_token_id
self.eos_token_id = eos_token_id
super().__init__(bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/autoformer/configuration_autoformer.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Autoformer model configuration"""
from typing import List, Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import AUTOFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class AutoformerConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of an [`AutoformerModel`]. It is used to instantiate an
Autoformer model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the Autoformer
[huggingface/autoformer-tourism-monthly](https://huggingface.co/huggingface/autoformer-tourism-monthly)
architecture.
Configuration objects inherit from [`PretrainedConfig`] can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
prediction_length (`int`):
The prediction length for the decoder. In other words, the prediction horizon of the model.
context_length (`int`, *optional*, defaults to `prediction_length`):
The context length for the encoder. If unset, the context length will be the same as the
`prediction_length`.
distribution_output (`string`, *optional*, defaults to `"student_t"`):
The distribution emission head for the model. Could be either "student_t", "normal" or "negative_binomial".
loss (`string`, *optional*, defaults to `"nll"`):
The loss function for the model corresponding to the `distribution_output` head. For parametric
distributions it is the negative log likelihood (nll) - which currently is the only supported one.
input_size (`int`, *optional*, defaults to 1):
The size of the target variable which by default is 1 for univariate targets. Would be > 1 in case of
multivariate targets.
lags_sequence (`list[int]`, *optional*, defaults to `[1, 2, 3, 4, 5, 6, 7]`):
The lags of the input time series as covariates often dictated by the frequency. Default is `[1, 2, 3, 4,
5, 6, 7]`.
scaling (`bool`, *optional* defaults to `True`):
Whether to scale the input targets.
num_time_features (`int`, *optional*, defaults to 0):
The number of time features in the input time series.
num_dynamic_real_features (`int`, *optional*, defaults to 0):
The number of dynamic real valued features.
num_static_categorical_features (`int`, *optional*, defaults to 0):
The number of static categorical features.
num_static_real_features (`int`, *optional*, defaults to 0):
The number of static real valued features.
cardinality (`list[int]`, *optional*):
The cardinality (number of different values) for each of the static categorical features. Should be a list
of integers, having the same length as `num_static_categorical_features`. Cannot be `None` if
`num_static_categorical_features` is > 0.
embedding_dimension (`list[int]`, *optional*):
The dimension of the embedding for each of the static categorical features. Should be a list of integers,
having the same length as `num_static_categorical_features`. Cannot be `None` if
`num_static_categorical_features` is > 0.
d_model (`int`, *optional*, defaults to 64):
Dimensionality of the transformer layers.
encoder_layers (`int`, *optional*, defaults to 2):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 2):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 2):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 2):
Number of attention heads for each attention layer in the Transformer decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 32):
Dimension of the "intermediate" (often named feed-forward) layer in encoder.
decoder_ffn_dim (`int`, *optional*, defaults to 32):
Dimension of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and decoder. If string, `"gelu"` and
`"relu"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the encoder, and decoder.
encoder_layerdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for the attention and fully connected layers for each encoder layer.
decoder_layerdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for the attention and fully connected layers for each decoder layer.
attention_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.1):
The dropout probability used between the two layers of the feed-forward networks.
num_parallel_samples (`int`, *optional*, defaults to 100):
The number of samples to generate in parallel for each time step of inference.
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated normal weight initialization distribution.
use_cache (`bool`, *optional*, defaults to `True`):
Whether to use the past key/values attentions (if applicable to the model) to speed up decoding.
label_length (`int`, *optional*, defaults to 10):
Start token length of the Autoformer decoder, which is used for direct multi-step prediction (i.e.
non-autoregressive generation).
moving_average (`int`, defaults to 25):
The window size of the moving average. In practice, it's the kernel size in AvgPool1d of the Decomposition
Layer.
autocorrelation_factor (`int`, defaults to 3):
"Attention" (i.e. AutoCorrelation mechanism) factor which is used to find top k autocorrelations delays.
It's recommended in the paper to set it to a number between 1 and 5.
Example:
```python
>>> from transformers import AutoformerConfig, AutoformerModel
>>> # Initializing a default Autoformer configuration
>>> configuration = AutoformerConfig()
>>> # Randomly initializing a model (with random weights) from the configuration
>>> model = AutoformerModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "autoformer"
attribute_map = {
"hidden_size": "d_model",
"num_attention_heads": "encoder_attention_heads",
"num_hidden_layers": "encoder_layers",
}
def __init__(
self,
prediction_length: Optional[int] = None,
context_length: Optional[int] = None,
distribution_output: str = "student_t",
loss: str = "nll",
input_size: int = 1,
lags_sequence: List[int] = [1, 2, 3, 4, 5, 6, 7],
scaling: bool = True,
num_time_features: int = 0,
num_dynamic_real_features: int = 0,
num_static_categorical_features: int = 0,
num_static_real_features: int = 0,
cardinality: Optional[List[int]] = None,
embedding_dimension: Optional[List[int]] = None,
d_model: int = 64,
encoder_attention_heads: int = 2,
decoder_attention_heads: int = 2,
encoder_layers: int = 2,
decoder_layers: int = 2,
encoder_ffn_dim: int = 32,
decoder_ffn_dim: int = 32,
activation_function: str = "gelu",
dropout: float = 0.1,
encoder_layerdrop: float = 0.1,
decoder_layerdrop: float = 0.1,
attention_dropout: float = 0.1,
activation_dropout: float = 0.1,
num_parallel_samples: int = 100,
init_std: float = 0.02,
use_cache: bool = True,
is_encoder_decoder=True,
# Autoformer arguments
label_length: int = 10,
moving_average: int = 25,
autocorrelation_factor: int = 3,
**kwargs,
):
# time series specific configuration
self.prediction_length = prediction_length
self.context_length = context_length if context_length is not None else prediction_length
self.distribution_output = distribution_output
self.loss = loss
self.input_size = input_size
self.num_time_features = num_time_features
self.lags_sequence = lags_sequence
self.scaling = scaling
self.num_dynamic_real_features = num_dynamic_real_features
self.num_static_real_features = num_static_real_features
self.num_static_categorical_features = num_static_categorical_features
if cardinality is not None and num_static_categorical_features > 0:
if len(cardinality) != num_static_categorical_features:
raise ValueError(
"The cardinality should be a list of the same length as `num_static_categorical_features`"
)
self.cardinality = cardinality
else:
self.cardinality = [0]
if embedding_dimension is not None and num_static_categorical_features > 0:
if len(embedding_dimension) != num_static_categorical_features:
raise ValueError(
"The embedding dimension should be a list of the same length as `num_static_categorical_features`"
)
self.embedding_dimension = embedding_dimension
else:
self.embedding_dimension = [min(50, (cat + 1) // 2) for cat in self.cardinality]
self.num_parallel_samples = num_parallel_samples
# Transformer architecture configuration
self.feature_size = input_size * len(self.lags_sequence) + self._number_of_features
self.d_model = d_model
self.encoder_attention_heads = encoder_attention_heads
self.decoder_attention_heads = decoder_attention_heads
self.encoder_ffn_dim = encoder_ffn_dim
self.decoder_ffn_dim = decoder_ffn_dim
self.encoder_layers = encoder_layers
self.decoder_layers = decoder_layers
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.activation_function = activation_function
self.init_std = init_std
self.use_cache = use_cache
# Autoformer
self.label_length = label_length
self.moving_average = moving_average
self.autocorrelation_factor = autocorrelation_factor
super().__init__(is_encoder_decoder=is_encoder_decoder, **kwargs)
@property
def _number_of_features(self) -> int:
return (
sum(self.embedding_dimension)
+ self.num_dynamic_real_features
+ self.num_time_features
+ self.num_static_real_features
+ self.input_size * 2 # the log1p(abs(loc)) and log(scale) features
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/autoformer/modeling_autoformer.py
|
# coding=utf-8
# Copyright (c) 2021 THUML @ Tsinghua University
# Copyright 2023 Amazon.com, Inc. or its affiliates. All Rights Reserved.
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Autoformer model."""
import math
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_attn_mask_utils import _prepare_4d_attention_mask
from ...modeling_outputs import (
BaseModelOutput,
ModelOutput,
SampleTSPredictionOutput,
Seq2SeqTSPredictionOutput,
)
from ...modeling_utils import PreTrainedModel
from ...time_series_utils import NegativeBinomialOutput, NormalOutput, StudentTOutput
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_autoformer import AutoformerConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "AutoformerConfig"
@dataclass
class AutoFormerDecoderOutput(ModelOutput):
"""
Base class for model's outputs that may also contain a past key/values (to speed up sequential decoding).
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
If `past_key_values` is used only the last hidden-state of the sequences of shape `(batch_size, 1,
hidden_size)` is output.
trend (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Trend tensor for each time series.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and optionally if
`config.is_encoder_decoder=True` 2 additional tensors of shape `(batch_size, num_heads,
encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and optionally if
`config.is_encoder_decoder=True` in the cross-attention blocks) that can be used (see `past_key_values`
input) to speed up sequential decoding.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` and `config.add_cross_attention=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
"""
last_hidden_state: torch.FloatTensor = None
trend: torch.FloatTensor = None
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class AutoformerModelOutput(ModelOutput):
"""
Autoformer model output that contains the additional trend output.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
If `past_key_values` is used only the last hidden-state of the sequences of shape `(batch_size, 1,
hidden_size)` is output.
trend (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Trend tensor for each time series.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the decoder at the output of each layer plus the optional initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the decoder's cross-attention layer, after the attention softmax, used to compute the
weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the encoder at the output of each layer plus the optional initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights of the encoder, after the attention softmax, used to compute the weighted average in the
self-attention heads.
loc (`torch.FloatTensor` of shape `(batch_size,)` or `(batch_size, input_size)`, *optional*):
Shift values of each time series' context window which is used to give the model inputs of the same
magnitude and then used to shift back to the original magnitude.
scale (`torch.FloatTensor` of shape `(batch_size,)` or `(batch_size, input_size)`, *optional*):
Scaling values of each time series' context window which is used to give the model inputs of the same
magnitude and then used to rescale back to the original magnitude.
static_features: (`torch.FloatTensor` of shape `(batch_size, feature size)`, *optional*):
Static features of each time series' in a batch which are copied to the covariates at inference time.
"""
last_hidden_state: torch.FloatTensor = None
trend: torch.FloatTensor = None
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
loc: Optional[torch.FloatTensor] = None
scale: Optional[torch.FloatTensor] = None
static_features: Optional[torch.FloatTensor] = None
from ..deprecated._archive_maps import AUTOFORMER_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesFeatureEmbedder with TimeSeries->Autoformer
class AutoformerFeatureEmbedder(nn.Module):
"""
Embed a sequence of categorical features.
Args:
cardinalities (`list[int]`):
List of cardinalities of the categorical features.
embedding_dims (`list[int]`):
List of embedding dimensions of the categorical features.
"""
def __init__(self, cardinalities: List[int], embedding_dims: List[int]) -> None:
super().__init__()
self.num_features = len(cardinalities)
self.embedders = nn.ModuleList([nn.Embedding(c, d) for c, d in zip(cardinalities, embedding_dims)])
def forward(self, features: torch.Tensor) -> torch.Tensor:
if self.num_features > 1:
# we slice the last dimension, giving an array of length
# self.num_features with shape (N,T) or (N)
cat_feature_slices = torch.chunk(features, self.num_features, dim=-1)
else:
cat_feature_slices = [features]
return torch.cat(
[
embed(cat_feature_slice.squeeze(-1))
for embed, cat_feature_slice in zip(self.embedders, cat_feature_slices)
],
dim=-1,
)
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesStdScaler with TimeSeriesTransformer->Autoformer,TimeSeries->Autoformer
class AutoformerStdScaler(nn.Module):
"""
Standardize features by calculating the mean and scaling along the first dimension, and then normalizes it by
subtracting from the mean and dividing by the standard deviation.
"""
def __init__(self, config: AutoformerConfig):
super().__init__()
self.dim = config.scaling_dim if hasattr(config, "scaling_dim") else 1
self.keepdim = config.keepdim if hasattr(config, "keepdim") else True
self.minimum_scale = config.minimum_scale if hasattr(config, "minimum_scale") else 1e-5
def forward(
self, data: torch.Tensor, observed_indicator: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Parameters:
data (`torch.Tensor` of shape `(batch_size, sequence_length, num_input_channels)`):
input for Batch norm calculation
observed_indicator (`torch.BoolTensor` of shape `(batch_size, sequence_length, num_input_channels)`):
Calculating the scale on the observed indicator.
Returns:
tuple of `torch.Tensor` of shapes
(`(batch_size, sequence_length, num_input_channels)`,`(batch_size, 1, num_input_channels)`,
`(batch_size, 1, num_input_channels)`)
"""
denominator = observed_indicator.sum(self.dim, keepdim=self.keepdim)
denominator = denominator.clamp_min(1.0)
loc = (data * observed_indicator).sum(self.dim, keepdim=self.keepdim) / denominator
variance = (((data - loc) * observed_indicator) ** 2).sum(self.dim, keepdim=self.keepdim) / denominator
scale = torch.sqrt(variance + self.minimum_scale)
return (data - loc) / scale, loc, scale
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesMeanScaler with TimeSeriesTransformer->Autoformer,TimeSeries->Autoformer
class AutoformerMeanScaler(nn.Module):
"""
Computes a scaling factor as the weighted average absolute value along the first dimension, and scales the data
accordingly.
"""
def __init__(self, config: AutoformerConfig):
super().__init__()
self.dim = config.scaling_dim if hasattr(config, "scaling_dim") else 1
self.keepdim = config.keepdim if hasattr(config, "keepdim") else True
self.minimum_scale = config.minimum_scale if hasattr(config, "minimum_scale") else 1e-10
self.default_scale = config.default_scale if hasattr(config, "default_scale") else None
def forward(
self, data: torch.Tensor, observed_indicator: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Parameters:
data (`torch.Tensor` of shape `(batch_size, sequence_length, num_input_channels)`):
input for Batch norm calculation
observed_indicator (`torch.BoolTensor` of shape `(batch_size, sequence_length, num_input_channels)`):
Calculating the scale on the observed indicator.
Returns:
tuple of `torch.Tensor` of shapes
(`(batch_size, sequence_length, num_input_channels)`,`(batch_size, 1, num_input_channels)`,
`(batch_size, 1, num_input_channels)`)
"""
ts_sum = (data * observed_indicator).abs().sum(self.dim, keepdim=True)
num_observed = observed_indicator.sum(self.dim, keepdim=True)
scale = ts_sum / torch.clamp(num_observed, min=1)
# If `default_scale` is provided, we use it, otherwise we use the scale
# of the batch.
if self.default_scale is None:
batch_sum = ts_sum.sum(dim=0)
batch_observations = torch.clamp(num_observed.sum(0), min=1)
default_scale = torch.squeeze(batch_sum / batch_observations)
else:
default_scale = self.default_scale * torch.ones_like(scale)
# apply default scale where there are no observations
scale = torch.where(num_observed > 0, scale, default_scale)
# ensure the scale is at least `self.minimum_scale`
scale = torch.clamp(scale, min=self.minimum_scale)
scaled_data = data / scale
if not self.keepdim:
scale = scale.squeeze(dim=self.dim)
return scaled_data, torch.zeros_like(scale), scale
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesNOPScaler with TimeSeriesTransformer->Autoformer,TimeSeries->Autoformer
class AutoformerNOPScaler(nn.Module):
"""
Assigns a scaling factor equal to 1 along the first dimension, and therefore applies no scaling to the input data.
"""
def __init__(self, config: AutoformerConfig):
super().__init__()
self.dim = config.scaling_dim if hasattr(config, "scaling_dim") else 1
self.keepdim = config.keepdim if hasattr(config, "keepdim") else True
def forward(
self, data: torch.Tensor, observed_indicator: torch.Tensor = None
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Parameters:
data (`torch.Tensor` of shape `(batch_size, sequence_length, num_input_channels)`):
input for Batch norm calculation
Returns:
tuple of `torch.Tensor` of shapes
(`(batch_size, sequence_length, num_input_channels)`,`(batch_size, 1, num_input_channels)`,
`(batch_size, 1, num_input_channels)`)
"""
scale = torch.ones_like(data, requires_grad=False).mean(dim=self.dim, keepdim=self.keepdim)
loc = torch.zeros_like(data, requires_grad=False).mean(dim=self.dim, keepdim=self.keepdim)
return data, loc, scale
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.weighted_average
def weighted_average(input_tensor: torch.Tensor, weights: Optional[torch.Tensor] = None, dim=None) -> torch.Tensor:
"""
Computes the weighted average of a given tensor across a given `dim`, masking values associated with weight zero,
meaning instead of `nan * 0 = nan` you will get `0 * 0 = 0`.
Args:
input_tensor (`torch.FloatTensor`):
Input tensor, of which the average must be computed.
weights (`torch.FloatTensor`, *optional*):
Weights tensor, of the same shape as `input_tensor`.
dim (`int`, *optional*):
The dim along which to average `input_tensor`.
Returns:
`torch.FloatTensor`: The tensor with values averaged along the specified `dim`.
"""
if weights is not None:
weighted_tensor = torch.where(weights != 0, input_tensor * weights, torch.zeros_like(input_tensor))
sum_weights = torch.clamp(weights.sum(dim=dim) if dim else weights.sum(), min=1.0)
return (weighted_tensor.sum(dim=dim) if dim else weighted_tensor.sum()) / sum_weights
else:
return input_tensor.mean(dim=dim)
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.nll
def nll(input: torch.distributions.Distribution, target: torch.Tensor) -> torch.Tensor:
"""
Computes the negative log likelihood loss from input distribution with respect to target.
"""
return -input.log_prob(target)
# Copied from transformers.models.marian.modeling_marian.MarianSinusoidalPositionalEmbedding with Marian->Autoformer
class AutoformerSinusoidalPositionalEmbedding(nn.Embedding):
"""This module produces sinusoidal positional embeddings of any length."""
def __init__(self, num_positions: int, embedding_dim: int, padding_idx: Optional[int] = None) -> None:
super().__init__(num_positions, embedding_dim)
self.weight = self._init_weight(self.weight)
@staticmethod
def _init_weight(out: nn.Parameter) -> nn.Parameter:
"""
Identical to the XLM create_sinusoidal_embeddings except features are not interleaved. The cos features are in
the 2nd half of the vector. [dim // 2:]
"""
n_pos, dim = out.shape
position_enc = np.array(
[[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)]
)
out.requires_grad = False # set early to avoid an error in pytorch-1.8+
sentinel = dim // 2 if dim % 2 == 0 else (dim // 2) + 1
out[:, 0:sentinel] = torch.FloatTensor(np.sin(position_enc[:, 0::2]))
out[:, sentinel:] = torch.FloatTensor(np.cos(position_enc[:, 1::2]))
out.detach_()
return out
@torch.no_grad()
def forward(self, input_ids_shape: torch.Size, past_key_values_length: int = 0) -> torch.Tensor:
"""`input_ids_shape` is expected to be [bsz x seqlen]."""
bsz, seq_len = input_ids_shape[:2]
positions = torch.arange(
past_key_values_length, past_key_values_length + seq_len, dtype=torch.long, device=self.weight.device
)
return super().forward(positions)
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesValueEmbedding with TimeSeries->Autoformer
class AutoformerValueEmbedding(nn.Module):
def __init__(self, feature_size, d_model):
super().__init__()
self.value_projection = nn.Linear(in_features=feature_size, out_features=d_model, bias=False)
def forward(self, x):
return self.value_projection(x)
# Class based on
# https://github.com/thuml/Autoformer/blob/c6a0694ff484753f2d986cc0bb1f99ee850fc1a8/layers/Autoformer_EncDec.py#L39
# where AutoformerSeriesDecompositionLayer is series_decomp + moving_average
class AutoformerSeriesDecompositionLayer(nn.Module):
"""
Returns the trend and the seasonal parts of the time series. Calculated as:
x_trend = AvgPool(Padding(X)) and x_seasonal = X - x_trend
"""
def __init__(self, config: AutoformerConfig):
super().__init__()
self.kernel_size = config.moving_average
self.avg = nn.AvgPool1d(kernel_size=self.kernel_size, stride=1, padding=0)
def forward(self, x):
"""Input shape: Batch x Time x EMBED_DIM"""
# padding on the both ends of time series
num_of_pads = (self.kernel_size - 1) // 2
front = x[:, 0:1, :].repeat(1, num_of_pads, 1)
end = x[:, -1:, :].repeat(1, num_of_pads, 1)
x_padded = torch.cat([front, x, end], dim=1)
# calculate the trend and seasonal part of the series
x_trend = self.avg(x_padded.permute(0, 2, 1)).permute(0, 2, 1)
x_seasonal = x - x_trend
return x_seasonal, x_trend
# Class based on
# https://github.com/thuml/Autoformer/blob/c6a0694ff484753f2d986cc0bb1f99ee850fc1a8/layers/Autoformer_EncDec.py#L6
# where AutoformerLayernorm is my_Layernorm
class AutoformerLayernorm(nn.Module):
"""
Special designed layer normalization for the seasonal part, calculated as: AutoformerLayernorm(x) = nn.LayerNorm(x)
- torch.mean(nn.LayerNorm(x))
"""
def __init__(self, config: AutoformerConfig):
super().__init__()
self.layernorm = nn.LayerNorm(config.d_model)
def forward(self, x):
x_hat = self.layernorm(x)
bias = torch.mean(x_hat, dim=1).unsqueeze(1).repeat(1, x.shape[1], 1)
return x_hat - bias
class AutoformerAttention(nn.Module):
"""
AutoCorrelation Mechanism with the following two phases:
(1) period-based dependencies discovery (2) time delay aggregation
This block replace the canonical self-attention mechanism.
"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
autocorrelation_factor: int = 3,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if (self.head_dim * num_heads) != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim}"
f" and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.is_decoder = is_decoder
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.autocorrelation_factor = autocorrelation_factor
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
key_value_states: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, _ = hidden_states.size()
# get query proj
query_states = self.q_proj(hidden_states)
# get key, value proj
# `past_key_value[0].shape[2] == key_value_states.shape[1]`
# is checking that the `sequence_length` of the `past_key_value` is the same as
# the provided `key_value_states` to support prefix tuning
if (
is_cross_attention
and past_key_value is not None
and past_key_value[0].shape[2] == key_value_states.shape[1]
):
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = torch.cat([past_key_value[0], key_states], dim=2)
value_states = torch.cat([past_key_value[1], value_states], dim=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, tgt_len, bsz).view(*proj_shape)
key_states = key_states.view(*proj_shape)
value_states = value_states.view(*proj_shape)
# (1) period-based dependencies discovery
# Resize (truncation or zero filling)
queries_time_length = query_states.size(1)
values_time_length = value_states.size(1)
if queries_time_length > values_time_length:
query_states = query_states[:, : (queries_time_length - values_time_length), :]
zeros = torch.zeros_like(query_states).float()
value_states = torch.cat([value_states, zeros], dim=1)
key_states = torch.cat([key_states, zeros], dim=1)
else:
value_states = value_states[:, :queries_time_length, :]
key_states = key_states[:, :queries_time_length, :]
query_states_fft = torch.fft.rfft(query_states, n=tgt_len, dim=1)
key_states_fft = torch.fft.rfft(key_states, n=tgt_len, dim=1)
attn_weights = query_states_fft * torch.conj(key_states_fft)
attn_weights = torch.fft.irfft(attn_weights, n=tgt_len, dim=1) # Autocorrelation(Q,K)
src_len = key_states.size(1)
channel = key_states.size(2)
if attn_weights.size() != (bsz * self.num_heads, tgt_len, channel):
raise ValueError(
f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, channel)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (bsz, 1, tgt_len, src_len):
raise ValueError(
f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {attention_mask.size()}"
)
attn_weights = attn_weights.view(bsz, self.num_heads, tgt_len, src_len) + attention_mask
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, src_len)
if layer_head_mask is not None:
if layer_head_mask.size() != (self.num_heads,):
raise ValueError(
f"Head mask for a single layer should be of size {(self.num_heads,)}, but is"
f" {layer_head_mask.size()}"
)
attn_weights = layer_head_mask.view(1, -1, 1, 1) * attn_weights.view(bsz, self.num_heads, tgt_len, channel)
attn_weights = attn_weights.view(bsz * self.num_heads, tgt_len, channel)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to be reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(bsz, self.num_heads, tgt_len, channel)
attn_weights = attn_weights_reshaped.view(bsz * self.num_heads, tgt_len, channel)
else:
attn_weights_reshaped = None
# time delay aggregation
time_length = value_states.size(1)
autocorrelations = attn_weights.view(bsz, self.num_heads, tgt_len, channel)
# find top k autocorrelations delays
top_k = int(self.autocorrelation_factor * math.log(time_length))
autocorrelations_mean_on_head_channel = torch.mean(autocorrelations, dim=(1, -1)) # bsz x tgt_len
if self.training:
autocorrelations_mean_on_bsz = torch.mean(autocorrelations_mean_on_head_channel, dim=0)
_, top_k_delays_index = torch.topk(autocorrelations_mean_on_bsz, top_k)
top_k_autocorrelations = torch.stack(
[autocorrelations_mean_on_head_channel[:, top_k_delays_index[i]] for i in range(top_k)], dim=-1
)
else:
top_k_autocorrelations, top_k_delays_index = torch.topk(
autocorrelations_mean_on_head_channel, top_k, dim=1
)
top_k_autocorrelations = torch.softmax(top_k_autocorrelations, dim=-1) # bsz x top_k
# compute aggregation: value_states.roll(delay) * top_k_autocorrelations(delay)
if not self.training:
# used for compute values_states.roll(delay) in inference
tmp_values = value_states.repeat(1, 2, 1)
init_index = (
torch.arange(time_length)
.view(1, -1, 1)
.repeat(bsz * self.num_heads, 1, channel)
.to(value_states.device)
)
delays_agg = torch.zeros_like(value_states).float() # bsz x time_length x channel
for i in range(top_k):
# compute value_states roll delay
if not self.training:
tmp_delay = init_index + top_k_delays_index[:, i].view(-1, 1, 1).repeat(
self.num_heads, tgt_len, channel
)
value_states_roll_delay = torch.gather(tmp_values, dim=1, index=tmp_delay)
else:
value_states_roll_delay = value_states.roll(shifts=-int(top_k_delays_index[i]), dims=1)
# aggregation
top_k_autocorrelations_at_delay = (
top_k_autocorrelations[:, i].view(-1, 1, 1).repeat(self.num_heads, tgt_len, channel)
)
delays_agg += value_states_roll_delay * top_k_autocorrelations_at_delay
attn_output = delays_agg.contiguous()
if attn_output.size() != (bsz * self.num_heads, tgt_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(bsz * self.num_heads, tgt_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(bsz, self.num_heads, tgt_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
# Use the `embed_dim` from the config (stored in the class) rather than `hidden_state` because `attn_output` can be
# partitioned across GPUs when using tensor-parallelism.
attn_output = attn_output.reshape(bsz, tgt_len, self.embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped, past_key_value
class AutoformerEncoderLayer(nn.Module):
def __init__(self, config: AutoformerConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = AutoformerAttention(
embed_dim=self.embed_dim,
num_heads=config.encoder_attention_heads,
dropout=config.attention_dropout,
autocorrelation_factor=config.autocorrelation_factor,
)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = AutoformerLayernorm(config)
self.decomp1 = AutoformerSeriesDecompositionLayer(config)
self.decomp2 = AutoformerSeriesDecompositionLayer(config)
def forward(
self,
hidden_states: torch.FloatTensor,
attention_mask: torch.FloatTensor,
layer_head_mask: torch.FloatTensor,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.FloatTensor, Optional[torch.FloatTensor]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states, attn_weights, _ = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
# added layer norm here as an improvement
hidden_states = self.self_attn_layer_norm(hidden_states)
hidden_states, _ = self.decomp1(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states, _ = self.decomp2(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
if hidden_states.dtype == torch.float16 and (
torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any()
):
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class AutoformerDecoderLayer(nn.Module):
def __init__(self, config: AutoformerConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = AutoformerAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
autocorrelation_factor=config.autocorrelation_factor,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.encoder_attn = AutoformerAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
is_decoder=True,
autocorrelation_factor=config.autocorrelation_factor,
)
self.encoder_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = AutoformerLayernorm(config)
self.decomp1 = AutoformerSeriesDecompositionLayer(config)
self.decomp2 = AutoformerSeriesDecompositionLayer(config)
self.decomp3 = AutoformerSeriesDecompositionLayer(config)
# source: https://github.com/thuml/Autoformer/blob/e6371e24f2ae2dd53e472edefdd5814c5176f864/layers/Autoformer_EncDec.py#L128
self.trend_projection = nn.Conv1d(
in_channels=self.embed_dim,
out_channels=config.feature_size,
kernel_size=3,
stride=1,
padding=1,
padding_mode="circular",
bias=False,
)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
layer_head_mask: Optional[torch.Tensor] = None,
cross_attn_layer_head_mask: Optional[torch.Tensor] = None,
past_key_value: Optional[Tuple[torch.Tensor]] = None,
output_attentions: Optional[bool] = False,
use_cache: Optional[bool] = True,
) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
encoder_hidden_states (`torch.FloatTensor`):
cross attention input to the layer of shape `(batch, seq_len, embed_dim)`
encoder_attention_mask (`torch.FloatTensor`): encoder attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (`torch.FloatTensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`.
cross_attn_layer_head_mask (`torch.FloatTensor`): mask for cross-attention heads in a given layer of
size `(decoder_attention_heads,)`.
past_key_value (`Tuple(torch.FloatTensor)`): cached past key and value projection states
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
use_cache: (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the `present_key_value` state to be used for subsequent
decoding.
"""
residual = hidden_states
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states, trend1 = self.decomp1(hidden_states)
# added layer norm here as an improvement
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, cross_attn_weights, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=cross_attn_layer_head_mask,
past_key_value=cross_attn_past_key_value,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states, trend2 = self.decomp2(hidden_states)
# added layer norm here as an improvement
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states, trend3 = self.decomp3(hidden_states)
hidden_states = self.final_layer_norm(hidden_states)
if encoder_hidden_states is not None:
residual_trend = trend1 + trend2 + trend3
else:
residual_trend = trend1 + trend3
residual_trend = self.trend_projection(residual_trend.permute(0, 2, 1)).transpose(1, 2)
outputs = ((hidden_states, residual_trend),)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
if use_cache:
outputs += (present_key_value,)
return outputs
class AutoformerPreTrainedModel(PreTrainedModel):
config_class = AutoformerConfig
base_model_prefix = "model"
main_input_name = "past_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
std = self.config.init_std
if isinstance(module, (nn.Linear, nn.Conv1d)):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, AutoformerSinusoidalPositionalEmbedding):
pass
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
AUTOFORMER_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`AutoformerConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
AUTOFORMER_INPUTS_DOCSTRING = r"""
Args:
past_values (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Past values of the time series, that serve as context in order to predict the future. These values may
contain lags, i.e. additional values from the past which are added in order to serve as "extra context".
The `past_values` is what the Transformer encoder gets as input (with optional additional features, such as
`static_categorical_features`, `static_real_features`, `past_time_features`).
The sequence length here is equal to `context_length` + `max(config.lags_sequence)`.
Missing values need to be replaced with zeros.
past_time_features (`torch.FloatTensor` of shape `(batch_size, sequence_length, num_features)`, *optional*):
Optional time features, which the model internally will add to `past_values`. These could be things like
"month of year", "day of the month", etc. encoded as vectors (for instance as Fourier features). These
could also be so-called "age" features, which basically help the model know "at which point in life" a
time-series is. Age features have small values for distant past time steps and increase monotonically the
more we approach the current time step.
These features serve as the "positional encodings" of the inputs. So contrary to a model like BERT, where
the position encodings are learned from scratch internally as parameters of the model, the Time Series
Transformer requires to provide additional time features.
The Autoformer only learns additional embeddings for `static_categorical_features`.
past_observed_mask (`torch.BoolTensor` of shape `(batch_size, sequence_length)`, *optional*):
Boolean mask to indicate which `past_values` were observed and which were missing. Mask values selected in
`[0, 1]`:
- 1 for values that are **observed**,
- 0 for values that are **missing** (i.e. NaNs that were replaced by zeros).
static_categorical_features (`torch.LongTensor` of shape `(batch_size, number of static categorical features)`, *optional*):
Optional static categorical features for which the model will learn an embedding, which it will add to the
values of the time series.
Static categorical features are features which have the same value for all time steps (static over time).
A typical example of a static categorical feature is a time series ID.
static_real_features (`torch.FloatTensor` of shape `(batch_size, number of static real features)`, *optional*):
Optional static real features which the model will add to the values of the time series.
Static real features are features which have the same value for all time steps (static over time).
A typical example of a static real feature is promotion information.
future_values (`torch.FloatTensor` of shape `(batch_size, prediction_length)`):
Future values of the time series, that serve as labels for the model. The `future_values` is what the
Transformer needs to learn to output, given the `past_values`.
See the demo notebook and code snippets for details.
Missing values need to be replaced with zeros.
future_time_features (`torch.FloatTensor` of shape `(batch_size, prediction_length, num_features)`, *optional*):
Optional time features, which the model internally will add to `future_values`. These could be things like
"month of year", "day of the month", etc. encoded as vectors (for instance as Fourier features). These
could also be so-called "age" features, which basically help the model know "at which point in life" a
time-series is. Age features have small values for distant past time steps and increase monotonically the
more we approach the current time step.
These features serve as the "positional encodings" of the inputs. So contrary to a model like BERT, where
the position encodings are learned from scratch internally as parameters of the model, the Time Series
Transformer requires to provide additional features.
The Autoformer only learns additional embeddings for `static_categorical_features`.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on certain token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
decoder_attention_mask (`torch.LongTensor` of shape `(batch_size, target_sequence_length)`, *optional*):
Mask to avoid performing attention on certain token indices. By default, a causal mask will be used, to
make sure the model can only look at previous inputs in order to predict the future.
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
decoder_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of `last_hidden_state`, `hidden_states` (*optional*) and `attentions` (*optional*)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)` (*optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.time_series_transformer.modeling_time_series_transformer.TimeSeriesTransformerEncoder with TimeSeriesTransformer->Autoformer,TimeSeries->Autoformer
class AutoformerEncoder(AutoformerPreTrainedModel):
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`AutoformerEncoderLayer`].
Args:
config: AutoformerConfig
"""
def __init__(self, config: AutoformerConfig):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
if config.prediction_length is None:
raise ValueError("The `prediction_length` config needs to be specified.")
self.value_embedding = AutoformerValueEmbedding(feature_size=config.feature_size, d_model=config.d_model)
self.embed_positions = AutoformerSinusoidalPositionalEmbedding(
config.context_length + config.prediction_length, config.d_model
)
self.layers = nn.ModuleList([AutoformerEncoderLayer(config) for _ in range(config.encoder_layers)])
self.layernorm_embedding = nn.LayerNorm(config.d_model)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
attention_mask: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
r"""
Args:
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(encoder_layers, encoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
hidden_states = self.value_embedding(inputs_embeds)
embed_pos = self.embed_positions(inputs_embeds.size())
hidden_states = self.layernorm_embedding(hidden_states + embed_pos)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
# expand attention_mask
if attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _prepare_4d_attention_mask(attention_mask, inputs_embeds.dtype)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
# check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
if head_mask.size()[0] != (len(self.layers)):
raise ValueError(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
to_drop = False
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop: # skip the layer
to_drop = True
if to_drop:
layer_outputs = (None, None)
else:
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
encoder_layer.__call__,
hidden_states,
attention_mask,
(head_mask[idx] if head_mask is not None else None),
output_attentions,
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
class AutoformerDecoder(AutoformerPreTrainedModel):
"""
Transformer decoder consisting of `config.decoder_layers` layers. Each layer is a [`AutoformerDecoderLayer`]
Args:
config: AutoformerConfig
"""
def __init__(self, config: AutoformerConfig):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
if config.prediction_length is None:
raise ValueError("The `prediction_length` config needs to be specified.")
self.value_embedding = AutoformerValueEmbedding(feature_size=config.feature_size, d_model=config.d_model)
self.embed_positions = AutoformerSinusoidalPositionalEmbedding(
config.context_length + config.prediction_length, config.d_model
)
self.layers = nn.ModuleList([AutoformerDecoderLayer(config) for _ in range(config.decoder_layers)])
self.layernorm_embedding = nn.LayerNorm(config.d_model)
# https://github.com/thuml/Autoformer/blob/e6371e24f2ae2dd53e472edefdd5814c5176f864/models/Autoformer.py#L74
self.seasonality_projection = nn.Linear(config.d_model, config.feature_size)
self.gradient_checkpointing = False
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
trend: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, AutoFormerDecoderOutput]:
r"""
Args:
trend (`torch.FloatTensor` of shape `(batch_size, prediction_length, feature_size)`, *optional*):
The trend sequence to be fed to the decoder.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`torch.LongTensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
cross_attn_head_mask (`torch.Tensor` of shape `(decoder_layers, decoder_attention_heads)`, *optional*):
Mask to nullify selected heads of the cross-attention modules in the decoder to avoid performing
cross-attention on hidden heads. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of
shape `(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of
shape `(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the
cross-attention blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those
that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of
all `decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
use_cache (`bool`, *optional*):
If `use_cache` is True, `past_key_values` key value states are returned and can be used to speed up
decoding (see `past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
input_shape = inputs_embeds.size()[:-1]
# expand encoder attention mask
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
encoder_attention_mask = _prepare_4d_attention_mask(
encoder_attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]
)
hidden_states = self.value_embedding(inputs_embeds)
embed_pos = self.embed_positions(
inputs_embeds.size(), past_key_values_length=self.config.context_length - self.config.label_length
)
hidden_states = self.layernorm_embedding(hidden_states + embed_pos)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
next_decoder_cache = () if use_cache else None
# check if head_mask/cross_attn_head_mask has a correct number of layers specified if desired
for attn_mask, mask_name in zip([head_mask, cross_attn_head_mask], ["head_mask", "cross_attn_head_mask"]):
if attn_mask is not None:
if attn_mask.size()[0] != (len(self.layers)):
raise ValueError(
f"The `{mask_name}` should be specified for {len(self.layers)} layers, but it is for"
f" {head_mask.size()[0]}."
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
past_key_value = past_key_values[idx] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
attention_mask,
encoder_hidden_states,
encoder_attention_mask,
head_mask[idx] if head_mask is not None else None,
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None,
None,
output_attentions,
use_cache,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
layer_head_mask=(head_mask[idx] if head_mask is not None else None),
cross_attn_layer_head_mask=(
cross_attn_head_mask[idx] if cross_attn_head_mask is not None else None
),
past_key_value=past_key_value,
output_attentions=output_attentions,
use_cache=use_cache,
)
(hidden_states, residual_trend) = layer_outputs[0]
trend = trend + residual_trend
if use_cache:
next_decoder_cache += (layer_outputs[3 if output_attentions else 1],)
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# project seasonality representation
hidden_states = self.seasonality_projection(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
next_cache = next_decoder_cache if use_cache else None
if not return_dict:
return tuple(
v
for v in [hidden_states, trend, next_cache, all_hidden_states, all_self_attns, all_cross_attentions]
if v is not None
)
return AutoFormerDecoderOutput(
last_hidden_state=hidden_states,
trend=trend,
past_key_values=next_cache,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
)
@add_start_docstrings(
"The bare Autoformer Model outputting raw hidden-states without any specific head on top.",
AUTOFORMER_START_DOCSTRING,
)
class AutoformerModel(AutoformerPreTrainedModel):
def __init__(self, config: AutoformerConfig):
super().__init__(config)
if config.scaling == "mean" or config.scaling is True:
self.scaler = AutoformerMeanScaler(config)
elif config.scaling == "std":
self.scaler = AutoformerStdScaler(config)
else:
self.scaler = AutoformerNOPScaler(config)
if config.num_static_categorical_features > 0:
self.embedder = AutoformerFeatureEmbedder(
cardinalities=config.cardinality, embedding_dims=config.embedding_dimension
)
# transformer encoder-decoder and mask initializer
self.encoder = AutoformerEncoder(config)
self.decoder = AutoformerDecoder(config)
# used for decoder seasonal and trend initialization
self.decomposition_layer = AutoformerSeriesDecompositionLayer(config)
# Initialize weights and apply final processing
self.post_init()
@property
def _past_length(self) -> int:
return self.config.context_length + max(self.config.lags_sequence)
def get_lagged_subsequences(
self, sequence: torch.Tensor, subsequences_length: int, shift: int = 0
) -> torch.Tensor:
"""
Returns lagged subsequences of a given sequence. Returns a tensor of shape (batch_size, subsequences_length,
feature_size, indices_length), containing lagged subsequences. Specifically, lagged[i, j, :, k] = sequence[i,
-indices[k]-subsequences_length+j, :].
Args:
sequence (`torch.Tensor` or shape `(batch_size, context_length,
feature_size)`): The sequence from which lagged subsequences should be extracted.
subsequences_length (`int`):
Length of the subsequences to be extracted.
shift (`int`, *optional* defaults to 0):
Shift the lags by this amount back in the time index.
"""
# calculates the indices of the lags by subtracting the shift value from the given lags_sequence
indices = [lag - shift for lag in self.config.lags_sequence]
# checks if the maximum lag plus the length of the subsequences exceeds the length of the input sequence
sequence_length = sequence.shape[1]
if max(indices) + subsequences_length > sequence_length:
raise ValueError(
f"lags cannot go further than history length, found lag {max(indices)} "
f"while history length is only {sequence_length}"
)
# extracts the lagged subsequences from the input sequence using the calculated indices
lagged_values = []
for lag_index in indices:
begin_index = -lag_index - subsequences_length
end_index = -lag_index if lag_index > 0 else None
lagged_values.append(sequence[:, begin_index:end_index, ...])
# return as stacked tensor in the feature dimension
return torch.stack(lagged_values, dim=-1)
def create_network_inputs(
self,
past_values: torch.Tensor,
past_time_features: torch.Tensor,
static_categorical_features: Optional[torch.Tensor] = None,
static_real_features: Optional[torch.Tensor] = None,
past_observed_mask: Optional[torch.Tensor] = None,
future_values: Optional[torch.Tensor] = None,
future_time_features: Optional[torch.Tensor] = None,
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor, torch.Tensor, torch.Tensor]:
"""
Creates the inputs for the network given the past and future values, time features, and static features.
Args:
past_values (`torch.Tensor`):
A tensor of shape `(batch_size, past_length, input_size)` containing the past values.
past_time_features (`torch.Tensor`):
A tensor of shape `(batch_size, past_length, num_features)` containing the past time features.
static_categorical_features (`Optional[torch.Tensor]`):
An optional tensor of shape `(batch_size, num_categorical_features)` containing the static categorical
features.
static_real_features (`Optional[torch.Tensor]`):
An optional tensor of shape `(batch_size, num_real_features)` containing the static real features.
past_observed_mask (`Optional[torch.Tensor]`):
An optional tensor of shape `(batch_size, past_length, input_size)` containing the mask of observed
values in the past.
future_values (`Optional[torch.Tensor]`):
An optional tensor of shape `(batch_size, future_length, input_size)` containing the future values.
Returns:
A tuple containing the following tensors:
- reshaped_lagged_sequence (`torch.Tensor`): A tensor of shape `(batch_size, sequence_length, num_lags *
input_size)` containing the lagged subsequences of the inputs.
- features (`torch.Tensor`): A tensor of shape `(batch_size, sequence_length, num_features)` containing the
concatenated static and time features.
- loc (`torch.Tensor`): A tensor of shape `(batch_size, input_size)` containing the mean of the input
values.
- scale (`torch.Tensor`): A tensor of shape `(batch_size, input_size)` containing the std of the input
values.
- static_feat (`torch.Tensor`): A tensor of shape `(batch_size, num_static_features)` containing the
concatenated static features.
"""
# time feature
time_feat = (
torch.cat(
(
past_time_features[:, self._past_length - self.config.context_length :, ...],
future_time_features,
),
dim=1,
)
if future_values is not None
else past_time_features[:, self._past_length - self.config.context_length :, ...]
)
# target
if past_observed_mask is None:
past_observed_mask = torch.ones_like(past_values)
context = past_values[:, -self.config.context_length :]
observed_context = past_observed_mask[:, -self.config.context_length :]
_, loc, scale = self.scaler(context, observed_context)
inputs = (
(torch.cat((past_values, future_values), dim=1) - loc) / scale
if future_values is not None
else (past_values - loc) / scale
)
# static features
log_abs_loc = loc.abs().log1p() if self.config.input_size == 1 else loc.squeeze(1).abs().log1p()
log_scale = scale.log() if self.config.input_size == 1 else scale.squeeze(1).log()
static_feat = torch.cat((log_abs_loc, log_scale), dim=1)
if static_real_features is not None:
static_feat = torch.cat((static_real_features, static_feat), dim=1)
if static_categorical_features is not None:
embedded_cat = self.embedder(static_categorical_features)
static_feat = torch.cat((embedded_cat, static_feat), dim=1)
expanded_static_feat = static_feat.unsqueeze(1).expand(-1, time_feat.shape[1], -1)
# all features
features = torch.cat((expanded_static_feat, time_feat), dim=-1)
# lagged features
subsequences_length = (
self.config.context_length + self.config.prediction_length
if future_values is not None
else self.config.context_length
)
lagged_sequence = self.get_lagged_subsequences(sequence=inputs, subsequences_length=subsequences_length)
lags_shape = lagged_sequence.shape
reshaped_lagged_sequence = lagged_sequence.reshape(lags_shape[0], lags_shape[1], -1)
if reshaped_lagged_sequence.shape[1] != time_feat.shape[1]:
raise ValueError(
f"input length {reshaped_lagged_sequence.shape[1]} and time feature lengths {time_feat.shape[1]} does not match"
)
return reshaped_lagged_sequence, features, loc, scale, static_feat
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
@add_start_docstrings_to_model_forward(AUTOFORMER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=AutoformerModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
past_values: torch.Tensor,
past_time_features: torch.Tensor,
past_observed_mask: torch.Tensor,
static_categorical_features: Optional[torch.Tensor] = None,
static_real_features: Optional[torch.Tensor] = None,
future_values: Optional[torch.Tensor] = None,
future_time_features: Optional[torch.Tensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
output_hidden_states: Optional[bool] = None,
output_attentions: Optional[bool] = None,
use_cache: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[AutoformerModelOutput, Tuple]:
r"""
Returns:
Examples:
```python
>>> from huggingface_hub import hf_hub_download
>>> import torch
>>> from transformers import AutoformerModel
>>> file = hf_hub_download(
... repo_id="hf-internal-testing/tourism-monthly-batch", filename="train-batch.pt", repo_type="dataset"
... )
>>> batch = torch.load(file)
>>> model = AutoformerModel.from_pretrained("huggingface/autoformer-tourism-monthly")
>>> # during training, one provides both past and future values
>>> # as well as possible additional features
>>> outputs = model(
... past_values=batch["past_values"],
... past_time_features=batch["past_time_features"],
... past_observed_mask=batch["past_observed_mask"],
... static_categorical_features=batch["static_categorical_features"],
... future_values=batch["future_values"],
... future_time_features=batch["future_time_features"],
... )
>>> last_hidden_state = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_inputs, temporal_features, loc, scale, static_feat = self.create_network_inputs(
past_values=past_values,
past_time_features=past_time_features,
past_observed_mask=past_observed_mask,
static_categorical_features=static_categorical_features,
static_real_features=static_real_features,
future_values=future_values,
future_time_features=future_time_features,
)
if encoder_outputs is None:
enc_input = torch.cat(
(
transformer_inputs[:, : self.config.context_length, ...],
temporal_features[:, : self.config.context_length, ...],
),
dim=-1,
)
encoder_outputs = self.encoder(
inputs_embeds=enc_input,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
if future_values is not None:
# Decoder inputs
# seasonality and trend from context length
seasonal_input, trend_input = self.decomposition_layer(
transformer_inputs[:, : self.config.context_length, ...]
)
mean = (
torch.mean(transformer_inputs[:, : self.config.context_length, ...], dim=1)
.unsqueeze(1)
.repeat(1, self.config.prediction_length, 1)
)
zeros = torch.zeros(
[transformer_inputs.shape[0], self.config.prediction_length, transformer_inputs.shape[2]],
device=enc_input.device,
)
decoder_input = torch.cat(
(
torch.cat((seasonal_input[:, -self.config.label_length :, ...], zeros), dim=1),
temporal_features[:, self.config.context_length - self.config.label_length :, ...],
),
dim=-1,
)
trend_init = torch.cat(
(
torch.cat((trend_input[:, -self.config.label_length :, ...], mean), dim=1),
temporal_features[:, self.config.context_length - self.config.label_length :, ...],
),
dim=-1,
)
decoder_outputs = self.decoder(
trend=trend_init,
inputs_embeds=decoder_input,
attention_mask=decoder_attention_mask,
encoder_hidden_states=encoder_outputs[0],
head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
else:
decoder_outputs = AutoFormerDecoderOutput()
if not return_dict:
return decoder_outputs + encoder_outputs + (loc, scale, static_feat)
return AutoformerModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
trend=decoder_outputs.trend,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
loc=loc,
scale=scale,
static_features=static_feat,
)
@add_start_docstrings(
"The Autoformer Model with a distribution head on top for time-series forecasting.",
AUTOFORMER_START_DOCSTRING,
)
class AutoformerForPrediction(AutoformerPreTrainedModel):
def __init__(self, config: AutoformerConfig):
super().__init__(config)
self.model = AutoformerModel(config)
if config.distribution_output == "student_t":
self.distribution_output = StudentTOutput(dim=config.input_size)
elif config.distribution_output == "normal":
self.distribution_output = NormalOutput(dim=config.input_size)
elif config.distribution_output == "negative_binomial":
self.distribution_output = NegativeBinomialOutput(dim=config.input_size)
else:
raise ValueError(f"Unknown distribution output {config.distribution_output}")
self.parameter_projection = self.distribution_output.get_parameter_projection(self.model.config.feature_size)
self.target_shape = self.distribution_output.event_shape
if config.loss == "nll":
self.loss = nll
else:
raise ValueError(f"Unknown loss function {config.loss}")
# Initialize weights of distribution_output and apply final processing
self.post_init()
def output_params(self, decoder_output):
return self.parameter_projection(decoder_output[:, -self.config.prediction_length :, :])
def get_encoder(self):
return self.model.get_encoder()
def get_decoder(self):
return self.model.get_decoder()
@torch.jit.ignore
def output_distribution(self, params, loc=None, scale=None, trailing_n=None) -> torch.distributions.Distribution:
sliced_params = params
if trailing_n is not None:
sliced_params = [p[:, -trailing_n:] for p in params]
return self.distribution_output.distribution(sliced_params, loc=loc, scale=scale)
@add_start_docstrings_to_model_forward(AUTOFORMER_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=Seq2SeqTSPredictionOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
past_values: torch.Tensor,
past_time_features: torch.Tensor,
past_observed_mask: torch.Tensor,
static_categorical_features: Optional[torch.Tensor] = None,
static_real_features: Optional[torch.Tensor] = None,
future_values: Optional[torch.Tensor] = None,
future_time_features: Optional[torch.Tensor] = None,
future_observed_mask: Optional[torch.Tensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
decoder_head_mask: Optional[torch.Tensor] = None,
cross_attn_head_mask: Optional[torch.Tensor] = None,
encoder_outputs: Optional[List[torch.FloatTensor]] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
output_hidden_states: Optional[bool] = None,
output_attentions: Optional[bool] = None,
use_cache: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Seq2SeqTSPredictionOutput, Tuple]:
r"""
Returns:
Examples:
```python
>>> from huggingface_hub import hf_hub_download
>>> import torch
>>> from transformers import AutoformerForPrediction
>>> file = hf_hub_download(
... repo_id="hf-internal-testing/tourism-monthly-batch", filename="train-batch.pt", repo_type="dataset"
... )
>>> batch = torch.load(file)
>>> model = AutoformerForPrediction.from_pretrained("huggingface/autoformer-tourism-monthly")
>>> # during training, one provides both past and future values
>>> # as well as possible additional features
>>> outputs = model(
... past_values=batch["past_values"],
... past_time_features=batch["past_time_features"],
... past_observed_mask=batch["past_observed_mask"],
... static_categorical_features=batch["static_categorical_features"],
... future_values=batch["future_values"],
... future_time_features=batch["future_time_features"],
... )
>>> loss = outputs.loss
>>> loss.backward()
>>> # during inference, one only provides past values
>>> # as well as possible additional features
>>> # the model autoregressively generates future values
>>> outputs = model.generate(
... past_values=batch["past_values"],
... past_time_features=batch["past_time_features"],
... past_observed_mask=batch["past_observed_mask"],
... static_categorical_features=batch["static_categorical_features"],
... future_time_features=batch["future_time_features"],
... )
>>> mean_prediction = outputs.sequences.mean(dim=1)
```
<Tip>
The AutoformerForPrediction can also use static_real_features. To do so, set num_static_real_features in
AutoformerConfig based on number of such features in the dataset (in case of tourism_monthly dataset it
is equal to 1), initialize the model and call as shown below:
```
>>> from huggingface_hub import hf_hub_download
>>> import torch
>>> from transformers import AutoformerConfig, AutoformerForPrediction
>>> file = hf_hub_download(
... repo_id="hf-internal-testing/tourism-monthly-batch", filename="train-batch.pt", repo_type="dataset"
... )
>>> batch = torch.load(file)
>>> # check number of static real features
>>> num_static_real_features = batch["static_real_features"].shape[-1]
>>> # load configuration of pretrained model and override num_static_real_features
>>> configuration = AutoformerConfig.from_pretrained(
... "huggingface/autoformer-tourism-monthly",
... num_static_real_features=num_static_real_features,
... )
>>> # we also need to update feature_size as it is not recalculated
>>> configuration.feature_size += num_static_real_features
>>> model = AutoformerForPrediction(configuration)
>>> outputs = model(
... past_values=batch["past_values"],
... past_time_features=batch["past_time_features"],
... past_observed_mask=batch["past_observed_mask"],
... static_categorical_features=batch["static_categorical_features"],
... static_real_features=batch["static_real_features"],
... future_values=batch["future_values"],
... future_time_features=batch["future_time_features"],
... )
```
</Tip>
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if future_values is not None:
use_cache = False
outputs = self.model(
past_values=past_values,
past_time_features=past_time_features,
past_observed_mask=past_observed_mask,
static_categorical_features=static_categorical_features,
static_real_features=static_real_features,
future_values=future_values,
future_time_features=future_time_features,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
cross_attn_head_mask=cross_attn_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
output_hidden_states=output_hidden_states,
output_attentions=output_attentions,
use_cache=use_cache,
return_dict=return_dict,
)
prediction_loss = None
params = None
if future_values is not None:
# outputs.last_hidden_state and trend
# loc is 4rd last and scale is 3rd last output
params = self.output_params(outputs[0] + outputs[1])
distribution = self.output_distribution(params, loc=outputs[-3], scale=outputs[-2])
loss = self.loss(distribution, future_values)
if future_observed_mask is None:
future_observed_mask = torch.ones_like(future_values)
if len(self.target_shape) == 0:
loss_weights = future_observed_mask
else:
loss_weights, _ = future_observed_mask.min(dim=-1, keepdim=False)
prediction_loss = weighted_average(loss, weights=loss_weights)
if not return_dict:
outputs = ((params,) + outputs[2:]) if params is not None else outputs[2:]
return ((prediction_loss,) + outputs) if prediction_loss is not None else outputs
return Seq2SeqTSPredictionOutput(
loss=prediction_loss,
params=params,
past_key_values=outputs.past_key_values,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
loc=outputs.loc,
scale=outputs.scale,
static_features=outputs.static_features,
)
@torch.no_grad()
def generate(
self,
past_values: torch.Tensor,
past_time_features: torch.Tensor,
future_time_features: torch.Tensor,
past_observed_mask: Optional[torch.Tensor] = None,
static_categorical_features: Optional[torch.Tensor] = None,
static_real_features: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
) -> SampleTSPredictionOutput:
r"""
Greedily generate sequences of sample predictions from a model with a probability distribution head.
Parameters:
past_values (`torch.FloatTensor` of shape `(batch_size, sequence_length)` or `(batch_size, sequence_length, input_size)`):
Past values of the time series, that serve as context in order to predict the future. The sequence size
of this tensor must be larger than the `context_length` of the model, since the model will use the
larger size to construct lag features, i.e. additional values from the past which are added in order to
serve as "extra context".
The `sequence_length` here is equal to `config.context_length` + `max(config.lags_sequence)`, which if
no `lags_sequence` is configured, is equal to `config.context_length` + 7 (as by default, the largest
look-back index in `config.lags_sequence` is 7). The property `_past_length` returns the actual length
of the past.
The `past_values` is what the Transformer encoder gets as input (with optional additional features,
such as `static_categorical_features`, `static_real_features`, `past_time_features` and lags).
Optionally, missing values need to be replaced with zeros and indicated via the `past_observed_mask`.
For multivariate time series, the `input_size` > 1 dimension is required and corresponds to the number
of variates in the time series per time step.
past_time_features (`torch.FloatTensor` of shape `(batch_size, sequence_length, num_features)`):
Required time features, which the model internally will add to `past_values`. These could be things
like "month of year", "day of the month", etc. encoded as vectors (for instance as Fourier features).
These could also be so-called "age" features, which basically help the model know "at which point in
life" a time-series is. Age features have small values for distant past time steps and increase
monotonically the more we approach the current time step. Holiday features are also a good example of
time features.
These features serve as the "positional encodings" of the inputs. So contrary to a model like BERT,
where the position encodings are learned from scratch internally as parameters of the model, the Time
Series Transformer requires to provide additional time features. The Time Series Transformer only
learns additional embeddings for `static_categorical_features`.
Additional dynamic real covariates can be concatenated to this tensor, with the caveat that these
features must but known at prediction time.
The `num_features` here is equal to `config.`num_time_features` + `config.num_dynamic_real_features`.
future_time_features (`torch.FloatTensor` of shape `(batch_size, prediction_length, num_features)`):
Required time features for the prediction window, which the model internally will add to sampled
predictions. These could be things like "month of year", "day of the month", etc. encoded as vectors
(for instance as Fourier features). These could also be so-called "age" features, which basically help
the model know "at which point in life" a time-series is. Age features have small values for distant
past time steps and increase monotonically the more we approach the current time step. Holiday features
are also a good example of time features.
These features serve as the "positional encodings" of the inputs. So contrary to a model like BERT,
where the position encodings are learned from scratch internally as parameters of the model, the Time
Series Transformer requires to provide additional time features. The Time Series Transformer only
learns additional embeddings for `static_categorical_features`.
Additional dynamic real covariates can be concatenated to this tensor, with the caveat that these
features must but known at prediction time.
The `num_features` here is equal to `config.`num_time_features` + `config.num_dynamic_real_features`.
past_observed_mask (`torch.BoolTensor` of shape `(batch_size, sequence_length)` or `(batch_size, sequence_length, input_size)`, *optional*):
Boolean mask to indicate which `past_values` were observed and which were missing. Mask values selected
in `[0, 1]`:
- 1 for values that are **observed**,
- 0 for values that are **missing** (i.e. NaNs that were replaced by zeros).
static_categorical_features (`torch.LongTensor` of shape `(batch_size, number of static categorical features)`, *optional*):
Optional static categorical features for which the model will learn an embedding, which it will add to
the values of the time series.
Static categorical features are features which have the same value for all time steps (static over
time).
A typical example of a static categorical feature is a time series ID.
static_real_features (`torch.FloatTensor` of shape `(batch_size, number of static real features)`, *optional*):
Optional static real features which the model will add to the values of the time series.
Static real features are features which have the same value for all time steps (static over time).
A typical example of a static real feature is promotion information.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
Return:
[`SampleTSPredictionOutput`] where the outputs `sequences` tensor will have shape `(batch_size, number of
samples, prediction_length)` or `(batch_size, number of samples, prediction_length, input_size)` for
multivariate predictions.
"""
outputs = self(
static_categorical_features=static_categorical_features,
static_real_features=static_real_features,
past_time_features=past_time_features,
past_values=past_values,
past_observed_mask=past_observed_mask,
future_time_features=None,
future_values=None,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=True,
use_cache=False,
)
decoder = self.model.get_decoder()
enc_last_hidden = outputs.encoder_last_hidden_state
loc = outputs.loc
scale = outputs.scale
static_feat = outputs.static_features
num_parallel_samples = self.config.num_parallel_samples
repeated_loc = loc.repeat_interleave(repeats=num_parallel_samples, dim=0)
repeated_scale = scale.repeat_interleave(repeats=num_parallel_samples, dim=0)
repeated_past_values = (
past_values.repeat_interleave(repeats=num_parallel_samples, dim=0) - repeated_loc
) / repeated_scale
time_features = torch.cat((past_time_features, future_time_features), dim=1)
expanded_static_feat = static_feat.unsqueeze(1).expand(-1, time_features.shape[1], -1)
features = torch.cat((expanded_static_feat, time_features), dim=-1)
repeated_features = features.repeat_interleave(repeats=num_parallel_samples, dim=0)
repeated_enc_last_hidden = enc_last_hidden.repeat_interleave(repeats=num_parallel_samples, dim=0)
lagged_sequence = self.model.get_lagged_subsequences(
sequence=repeated_past_values, subsequences_length=self.config.context_length
)
lags_shape = lagged_sequence.shape
reshaped_lagged_sequence = lagged_sequence.reshape(lags_shape[0], lags_shape[1], -1)
seasonal_input, trend_input = self.model.decomposition_layer(reshaped_lagged_sequence)
mean = torch.mean(reshaped_lagged_sequence, dim=1).unsqueeze(1).repeat(1, self.config.prediction_length, 1)
zeros = torch.zeros(
[reshaped_lagged_sequence.shape[0], self.config.prediction_length, reshaped_lagged_sequence.shape[2]],
device=reshaped_lagged_sequence.device,
)
decoder_input = torch.cat(
(
torch.cat((seasonal_input[:, -self.config.label_length :, ...], zeros), dim=1),
repeated_features[:, -self.config.prediction_length - self.config.label_length :, ...],
),
dim=-1,
)
trend_init = torch.cat(
(
torch.cat((trend_input[:, -self.config.label_length :, ...], mean), dim=1),
repeated_features[:, -self.config.prediction_length - self.config.label_length :, ...],
),
dim=-1,
)
decoder_outputs = decoder(
trend=trend_init, inputs_embeds=decoder_input, encoder_hidden_states=repeated_enc_last_hidden
)
decoder_last_hidden = decoder_outputs.last_hidden_state
trend = decoder_outputs.trend
params = self.output_params(decoder_last_hidden + trend)
distr = self.output_distribution(params, loc=repeated_loc, scale=repeated_scale)
future_samples = distr.sample()
return SampleTSPredictionOutput(
sequences=future_samples.reshape(
(-1, num_parallel_samples, self.config.prediction_length) + self.target_shape,
)
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/autoformer/__init__.py
|
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
# rely on isort to merge the imports
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_autoformer": [
"AUTOFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP",
"AutoformerConfig",
],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_autoformer"] = [
"AUTOFORMER_PRETRAINED_MODEL_ARCHIVE_LIST",
"AutoformerForPrediction",
"AutoformerModel",
"AutoformerPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_autoformer import (
AUTOFORMER_PRETRAINED_CONFIG_ARCHIVE_MAP,
AutoformerConfig,
)
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_autoformer import (
AUTOFORMER_PRETRAINED_MODEL_ARCHIVE_LIST,
AutoformerForPrediction,
AutoformerModel,
AutoformerPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/configuration_conditional_detr.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Conditional DETR model configuration"""
from collections import OrderedDict
from typing import Mapping
from packaging import version
from ...configuration_utils import PretrainedConfig
from ...onnx import OnnxConfig
from ...utils import logging
from ..auto import CONFIG_MAPPING
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import CONDITIONAL_DETR_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class ConditionalDetrConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ConditionalDetrModel`]. It is used to instantiate
a Conditional DETR model according to the specified arguments, defining the model architecture. Instantiating a
configuration with the defaults will yield a similar configuration to that of the Conditional DETR
[microsoft/conditional-detr-resnet-50](https://huggingface.co/microsoft/conditional-detr-resnet-50) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
use_timm_backbone (`bool`, *optional*, defaults to `True`):
Whether or not to use the `timm` library for the backbone. If set to `False`, will use the [`AutoBackbone`]
API.
backbone_config (`PretrainedConfig` or `dict`, *optional*):
The configuration of the backbone model. Only used in case `use_timm_backbone` is set to `False` in which
case it will default to `ResNetConfig()`.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
num_queries (`int`, *optional*, defaults to 100):
Number of object queries, i.e. detection slots. This is the maximal number of objects
[`ConditionalDetrModel`] can detect in a single image. For COCO, we recommend 100 queries.
d_model (`int`, *optional*, defaults to 256):
Dimension of the layers.
encoder_layers (`int`, *optional*, defaults to 6):
Number of encoder layers.
decoder_layers (`int`, *optional*, defaults to 6):
Number of decoder layers.
encoder_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer encoder.
decoder_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer decoder.
decoder_ffn_dim (`int`, *optional*, defaults to 2048):
Dimension of the "intermediate" (often named feed-forward) layer in decoder.
encoder_ffn_dim (`int`, *optional*, defaults to 2048):
Dimension of the "intermediate" (often named feed-forward) layer in decoder.
activation_function (`str` or `function`, *optional*, defaults to `"relu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
dropout (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
activation_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for activations inside the fully connected layer.
init_std (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
init_xavier_std (`float`, *optional*, defaults to 1):
The scaling factor used for the Xavier initialization gain in the HM Attention map module.
encoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the encoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
decoder_layerdrop (`float`, *optional*, defaults to 0.0):
The LayerDrop probability for the decoder. See the [LayerDrop paper](see https://arxiv.org/abs/1909.11556)
for more details.
auxiliary_loss (`bool`, *optional*, defaults to `False`):
Whether auxiliary decoding losses (loss at each decoder layer) are to be used.
position_embedding_type (`str`, *optional*, defaults to `"sine"`):
Type of position embeddings to be used on top of the image features. One of `"sine"` or `"learned"`.
backbone (`str`, *optional*, defaults to `"resnet50"`):
Name of backbone to use when `backbone_config` is `None`. If `use_pretrained_backbone` is `True`, this
will load the corresponding pretrained weights from the timm or transformers library. If `use_pretrained_backbone`
is `False`, this loads the backbone's config and uses that to initialize the backbone with random weights.
use_pretrained_backbone (`bool`, *optional*, defaults to `True`):
Whether to use pretrained weights for the backbone.
backbone_kwargs (`dict`, *optional*):
Keyword arguments to be passed to AutoBackbone when loading from a checkpoint
e.g. `{'out_indices': (0, 1, 2, 3)}`. Cannot be specified if `backbone_config` is set.
dilation (`bool`, *optional*, defaults to `False`):
Whether to replace stride with dilation in the last convolutional block (DC5). Only supported when
`use_timm_backbone` = `True`.
class_cost (`float`, *optional*, defaults to 1):
Relative weight of the classification error in the Hungarian matching cost.
bbox_cost (`float`, *optional*, defaults to 5):
Relative weight of the L1 error of the bounding box coordinates in the Hungarian matching cost.
giou_cost (`float`, *optional*, defaults to 2):
Relative weight of the generalized IoU loss of the bounding box in the Hungarian matching cost.
mask_loss_coefficient (`float`, *optional*, defaults to 1):
Relative weight of the Focal loss in the panoptic segmentation loss.
dice_loss_coefficient (`float`, *optional*, defaults to 1):
Relative weight of the DICE/F-1 loss in the panoptic segmentation loss.
bbox_loss_coefficient (`float`, *optional*, defaults to 5):
Relative weight of the L1 bounding box loss in the object detection loss.
giou_loss_coefficient (`float`, *optional*, defaults to 2):
Relative weight of the generalized IoU loss in the object detection loss.
eos_coefficient (`float`, *optional*, defaults to 0.1):
Relative classification weight of the 'no-object' class in the object detection loss.
focal_alpha (`float`, *optional*, defaults to 0.25):
Alpha parameter in the focal loss.
Examples:
```python
>>> from transformers import ConditionalDetrConfig, ConditionalDetrModel
>>> # Initializing a Conditional DETR microsoft/conditional-detr-resnet-50 style configuration
>>> configuration = ConditionalDetrConfig()
>>> # Initializing a model (with random weights) from the microsoft/conditional-detr-resnet-50 style configuration
>>> model = ConditionalDetrModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "conditional_detr"
keys_to_ignore_at_inference = ["past_key_values"]
attribute_map = {
"hidden_size": "d_model",
"num_attention_heads": "encoder_attention_heads",
}
def __init__(
self,
use_timm_backbone=True,
backbone_config=None,
num_channels=3,
num_queries=300,
encoder_layers=6,
encoder_ffn_dim=2048,
encoder_attention_heads=8,
decoder_layers=6,
decoder_ffn_dim=2048,
decoder_attention_heads=8,
encoder_layerdrop=0.0,
decoder_layerdrop=0.0,
is_encoder_decoder=True,
activation_function="relu",
d_model=256,
dropout=0.1,
attention_dropout=0.0,
activation_dropout=0.0,
init_std=0.02,
init_xavier_std=1.0,
auxiliary_loss=False,
position_embedding_type="sine",
backbone="resnet50",
use_pretrained_backbone=True,
backbone_kwargs=None,
dilation=False,
class_cost=2,
bbox_cost=5,
giou_cost=2,
mask_loss_coefficient=1,
dice_loss_coefficient=1,
cls_loss_coefficient=2,
bbox_loss_coefficient=5,
giou_loss_coefficient=2,
focal_alpha=0.25,
**kwargs,
):
if not use_timm_backbone and use_pretrained_backbone:
raise ValueError(
"Loading pretrained backbone weights from the transformers library is not supported yet. `use_timm_backbone` must be set to `True` when `use_pretrained_backbone=True`"
)
if backbone_config is not None and backbone is not None:
raise ValueError("You can't specify both `backbone` and `backbone_config`.")
if backbone_config is not None and use_timm_backbone:
raise ValueError("You can't specify both `backbone_config` and `use_timm_backbone`.")
# We default to values which were previously hard-coded in the model. This enables configurability of the config
# while keeping the default behavior the same.
if use_timm_backbone and backbone_kwargs is None:
backbone_kwargs = {}
if dilation:
backbone_kwargs["output_stride"] = 16
backbone_kwargs["out_indices"] = [1, 2, 3, 4]
backbone_kwargs["in_chans"] = num_channels
# Backwards compatibility
elif not use_timm_backbone and backbone in (None, "resnet50"):
if backbone_config is None:
logger.info("`backbone_config` is `None`. Initializing the config with the default `ResNet` backbone.")
backbone_config = CONFIG_MAPPING["resnet"](out_features=["stage4"])
elif isinstance(backbone_config, dict):
backbone_model_type = backbone_config.get("model_type")
config_class = CONFIG_MAPPING[backbone_model_type]
backbone_config = config_class.from_dict(backbone_config)
self.use_timm_backbone = use_timm_backbone
self.backbone_config = backbone_config
self.num_channels = num_channels
self.num_queries = num_queries
self.d_model = d_model
self.encoder_ffn_dim = encoder_ffn_dim
self.encoder_layers = encoder_layers
self.encoder_attention_heads = encoder_attention_heads
self.decoder_ffn_dim = decoder_ffn_dim
self.decoder_layers = decoder_layers
self.decoder_attention_heads = decoder_attention_heads
self.dropout = dropout
self.attention_dropout = attention_dropout
self.activation_dropout = activation_dropout
self.activation_function = activation_function
self.init_std = init_std
self.init_xavier_std = init_xavier_std
self.encoder_layerdrop = encoder_layerdrop
self.decoder_layerdrop = decoder_layerdrop
self.num_hidden_layers = encoder_layers
self.auxiliary_loss = auxiliary_loss
self.position_embedding_type = position_embedding_type
self.backbone = backbone
self.use_pretrained_backbone = use_pretrained_backbone
self.backbone_kwargs = backbone_kwargs
self.dilation = dilation
# Hungarian matcher
self.class_cost = class_cost
self.bbox_cost = bbox_cost
self.giou_cost = giou_cost
# Loss coefficients
self.mask_loss_coefficient = mask_loss_coefficient
self.dice_loss_coefficient = dice_loss_coefficient
self.cls_loss_coefficient = cls_loss_coefficient
self.bbox_loss_coefficient = bbox_loss_coefficient
self.giou_loss_coefficient = giou_loss_coefficient
self.focal_alpha = focal_alpha
super().__init__(is_encoder_decoder=is_encoder_decoder, **kwargs)
@property
def num_attention_heads(self) -> int:
return self.encoder_attention_heads
@property
def hidden_size(self) -> int:
return self.d_model
class ConditionalDetrOnnxConfig(OnnxConfig):
torch_onnx_minimum_version = version.parse("1.11")
@property
def inputs(self) -> Mapping[str, Mapping[int, str]]:
return OrderedDict(
[
("pixel_values", {0: "batch", 1: "num_channels", 2: "height", 3: "width"}),
("pixel_mask", {0: "batch"}),
]
)
@property
def atol_for_validation(self) -> float:
return 1e-5
@property
def default_onnx_opset(self) -> int:
return 12
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/convert_conditional_detr_original_pytorch_checkpoint_to_pytorch.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Conditional DETR checkpoints."""
import argparse
import json
from collections import OrderedDict
from pathlib import Path
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import (
ConditionalDetrConfig,
ConditionalDetrForObjectDetection,
ConditionalDetrForSegmentation,
ConditionalDetrImageProcessor,
)
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
# here we list all keys to be renamed (original name on the left, our name on the right)
rename_keys = []
for i in range(6):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append(
(f"transformer.encoder.layers.{i}.self_attn.out_proj.weight", f"encoder.layers.{i}.self_attn.out_proj.weight")
)
rename_keys.append(
(f"transformer.encoder.layers.{i}.self_attn.out_proj.bias", f"encoder.layers.{i}.self_attn.out_proj.bias")
)
rename_keys.append((f"transformer.encoder.layers.{i}.linear1.weight", f"encoder.layers.{i}.fc1.weight"))
rename_keys.append((f"transformer.encoder.layers.{i}.linear1.bias", f"encoder.layers.{i}.fc1.bias"))
rename_keys.append((f"transformer.encoder.layers.{i}.linear2.weight", f"encoder.layers.{i}.fc2.weight"))
rename_keys.append((f"transformer.encoder.layers.{i}.linear2.bias", f"encoder.layers.{i}.fc2.bias"))
rename_keys.append(
(f"transformer.encoder.layers.{i}.norm1.weight", f"encoder.layers.{i}.self_attn_layer_norm.weight")
)
rename_keys.append((f"transformer.encoder.layers.{i}.norm1.bias", f"encoder.layers.{i}.self_attn_layer_norm.bias"))
rename_keys.append((f"transformer.encoder.layers.{i}.norm2.weight", f"encoder.layers.{i}.final_layer_norm.weight"))
rename_keys.append((f"transformer.encoder.layers.{i}.norm2.bias", f"encoder.layers.{i}.final_layer_norm.bias"))
# decoder layers: 2 times output projection, 2 feedforward neural networks and 3 layernorms
rename_keys.append(
(f"transformer.decoder.layers.{i}.self_attn.out_proj.weight", f"decoder.layers.{i}.self_attn.out_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.self_attn.out_proj.bias", f"decoder.layers.{i}.self_attn.out_proj.bias")
)
rename_keys.append(
(
f"transformer.decoder.layers.{i}.cross_attn.out_proj.weight",
f"decoder.layers.{i}.encoder_attn.out_proj.weight",
)
)
rename_keys.append(
(
f"transformer.decoder.layers.{i}.cross_attn.out_proj.bias",
f"decoder.layers.{i}.encoder_attn.out_proj.bias",
)
)
rename_keys.append((f"transformer.decoder.layers.{i}.linear1.weight", f"decoder.layers.{i}.fc1.weight"))
rename_keys.append((f"transformer.decoder.layers.{i}.linear1.bias", f"decoder.layers.{i}.fc1.bias"))
rename_keys.append((f"transformer.decoder.layers.{i}.linear2.weight", f"decoder.layers.{i}.fc2.weight"))
rename_keys.append((f"transformer.decoder.layers.{i}.linear2.bias", f"decoder.layers.{i}.fc2.bias"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.norm1.weight", f"decoder.layers.{i}.self_attn_layer_norm.weight")
)
rename_keys.append((f"transformer.decoder.layers.{i}.norm1.bias", f"decoder.layers.{i}.self_attn_layer_norm.bias"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.norm2.weight", f"decoder.layers.{i}.encoder_attn_layer_norm.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.norm2.bias", f"decoder.layers.{i}.encoder_attn_layer_norm.bias")
)
rename_keys.append((f"transformer.decoder.layers.{i}.norm3.weight", f"decoder.layers.{i}.final_layer_norm.weight"))
rename_keys.append((f"transformer.decoder.layers.{i}.norm3.bias", f"decoder.layers.{i}.final_layer_norm.bias"))
# q, k, v projections in self/cross-attention in decoder for conditional DETR
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_qcontent_proj.weight", f"decoder.layers.{i}.sa_qcontent_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_kcontent_proj.weight", f"decoder.layers.{i}.sa_kcontent_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_qpos_proj.weight", f"decoder.layers.{i}.sa_qpos_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_kpos_proj.weight", f"decoder.layers.{i}.sa_kpos_proj.weight")
)
rename_keys.append((f"transformer.decoder.layers.{i}.sa_v_proj.weight", f"decoder.layers.{i}.sa_v_proj.weight"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_qcontent_proj.weight", f"decoder.layers.{i}.ca_qcontent_proj.weight")
)
# rename_keys.append((f"transformer.decoder.layers.{i}.ca_qpos_proj.weight", f"decoder.layers.{i}.ca_qpos_proj.weight"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_kcontent_proj.weight", f"decoder.layers.{i}.ca_kcontent_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_kpos_proj.weight", f"decoder.layers.{i}.ca_kpos_proj.weight")
)
rename_keys.append((f"transformer.decoder.layers.{i}.ca_v_proj.weight", f"decoder.layers.{i}.ca_v_proj.weight"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_qpos_sine_proj.weight", f"decoder.layers.{i}.ca_qpos_sine_proj.weight")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_qcontent_proj.bias", f"decoder.layers.{i}.sa_qcontent_proj.bias")
)
rename_keys.append(
(f"transformer.decoder.layers.{i}.sa_kcontent_proj.bias", f"decoder.layers.{i}.sa_kcontent_proj.bias")
)
rename_keys.append((f"transformer.decoder.layers.{i}.sa_qpos_proj.bias", f"decoder.layers.{i}.sa_qpos_proj.bias"))
rename_keys.append((f"transformer.decoder.layers.{i}.sa_kpos_proj.bias", f"decoder.layers.{i}.sa_kpos_proj.bias"))
rename_keys.append((f"transformer.decoder.layers.{i}.sa_v_proj.bias", f"decoder.layers.{i}.sa_v_proj.bias"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_qcontent_proj.bias", f"decoder.layers.{i}.ca_qcontent_proj.bias")
)
# rename_keys.append((f"transformer.decoder.layers.{i}.ca_qpos_proj.bias", f"decoder.layers.{i}.ca_qpos_proj.bias"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_kcontent_proj.bias", f"decoder.layers.{i}.ca_kcontent_proj.bias")
)
rename_keys.append((f"transformer.decoder.layers.{i}.ca_kpos_proj.bias", f"decoder.layers.{i}.ca_kpos_proj.bias"))
rename_keys.append((f"transformer.decoder.layers.{i}.ca_v_proj.bias", f"decoder.layers.{i}.ca_v_proj.bias"))
rename_keys.append(
(f"transformer.decoder.layers.{i}.ca_qpos_sine_proj.bias", f"decoder.layers.{i}.ca_qpos_sine_proj.bias")
)
# convolutional projection + query embeddings + layernorm of decoder + class and bounding box heads
# for conditional DETR, also convert reference point head and query scale MLP
rename_keys.extend(
[
("input_proj.weight", "input_projection.weight"),
("input_proj.bias", "input_projection.bias"),
("query_embed.weight", "query_position_embeddings.weight"),
("transformer.decoder.norm.weight", "decoder.layernorm.weight"),
("transformer.decoder.norm.bias", "decoder.layernorm.bias"),
("class_embed.weight", "class_labels_classifier.weight"),
("class_embed.bias", "class_labels_classifier.bias"),
("bbox_embed.layers.0.weight", "bbox_predictor.layers.0.weight"),
("bbox_embed.layers.0.bias", "bbox_predictor.layers.0.bias"),
("bbox_embed.layers.1.weight", "bbox_predictor.layers.1.weight"),
("bbox_embed.layers.1.bias", "bbox_predictor.layers.1.bias"),
("bbox_embed.layers.2.weight", "bbox_predictor.layers.2.weight"),
("bbox_embed.layers.2.bias", "bbox_predictor.layers.2.bias"),
("transformer.decoder.ref_point_head.layers.0.weight", "decoder.ref_point_head.layers.0.weight"),
("transformer.decoder.ref_point_head.layers.0.bias", "decoder.ref_point_head.layers.0.bias"),
("transformer.decoder.ref_point_head.layers.1.weight", "decoder.ref_point_head.layers.1.weight"),
("transformer.decoder.ref_point_head.layers.1.bias", "decoder.ref_point_head.layers.1.bias"),
("transformer.decoder.query_scale.layers.0.weight", "decoder.query_scale.layers.0.weight"),
("transformer.decoder.query_scale.layers.0.bias", "decoder.query_scale.layers.0.bias"),
("transformer.decoder.query_scale.layers.1.weight", "decoder.query_scale.layers.1.weight"),
("transformer.decoder.query_scale.layers.1.bias", "decoder.query_scale.layers.1.bias"),
("transformer.decoder.layers.0.ca_qpos_proj.weight", "decoder.layers.0.ca_qpos_proj.weight"),
("transformer.decoder.layers.0.ca_qpos_proj.bias", "decoder.layers.0.ca_qpos_proj.bias"),
]
)
def rename_key(state_dict, old, new):
val = state_dict.pop(old)
state_dict[new] = val
def rename_backbone_keys(state_dict):
new_state_dict = OrderedDict()
for key, value in state_dict.items():
if "backbone.0.body" in key:
new_key = key.replace("backbone.0.body", "backbone.conv_encoder.model")
new_state_dict[new_key] = value
else:
new_state_dict[key] = value
return new_state_dict
def read_in_q_k_v(state_dict, is_panoptic=False):
prefix = ""
if is_panoptic:
prefix = "conditional_detr."
# first: transformer encoder
for i in range(6):
# read in weights + bias of input projection layer (in PyTorch's MultiHeadAttention, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"{prefix}transformer.encoder.layers.{i}.self_attn.in_proj_weight")
in_proj_bias = state_dict.pop(f"{prefix}transformer.encoder.layers.{i}.self_attn.in_proj_bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"encoder.layers.{i}.self_attn.q_proj.weight"] = in_proj_weight[:256, :]
state_dict[f"encoder.layers.{i}.self_attn.q_proj.bias"] = in_proj_bias[:256]
state_dict[f"encoder.layers.{i}.self_attn.k_proj.weight"] = in_proj_weight[256:512, :]
state_dict[f"encoder.layers.{i}.self_attn.k_proj.bias"] = in_proj_bias[256:512]
state_dict[f"encoder.layers.{i}.self_attn.v_proj.weight"] = in_proj_weight[-256:, :]
state_dict[f"encoder.layers.{i}.self_attn.v_proj.bias"] = in_proj_bias[-256:]
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_conditional_detr_checkpoint(model_name, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our CONDITIONAL_DETR structure.
"""
# load default config
config = ConditionalDetrConfig()
# set backbone and dilation attributes
if "resnet101" in model_name:
config.backbone = "resnet101"
if "dc5" in model_name:
config.dilation = True
is_panoptic = "panoptic" in model_name
if is_panoptic:
config.num_labels = 250
else:
config.num_labels = 91
repo_id = "huggingface/label-files"
filename = "coco-detection-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
# load image processor
format = "coco_panoptic" if is_panoptic else "coco_detection"
image_processor = ConditionalDetrImageProcessor(format=format)
# prepare image
img = prepare_img()
encoding = image_processor(images=img, return_tensors="pt")
pixel_values = encoding["pixel_values"]
logger.info(f"Converting model {model_name}...")
# load original model from torch hub
conditional_detr = torch.hub.load("DeppMeng/ConditionalDETR", model_name, pretrained=True).eval()
state_dict = conditional_detr.state_dict()
# rename keys
for src, dest in rename_keys:
if is_panoptic:
src = "conditional_detr." + src
rename_key(state_dict, src, dest)
state_dict = rename_backbone_keys(state_dict)
# query, key and value matrices need special treatment
read_in_q_k_v(state_dict, is_panoptic=is_panoptic)
# important: we need to prepend a prefix to each of the base model keys as the head models use different attributes for them
prefix = "conditional_detr.model." if is_panoptic else "model."
for key in state_dict.copy().keys():
if is_panoptic:
if (
key.startswith("conditional_detr")
and not key.startswith("class_labels_classifier")
and not key.startswith("bbox_predictor")
):
val = state_dict.pop(key)
state_dict["conditional_detr.model" + key[4:]] = val
elif "class_labels_classifier" in key or "bbox_predictor" in key:
val = state_dict.pop(key)
state_dict["conditional_detr." + key] = val
elif key.startswith("bbox_attention") or key.startswith("mask_head"):
continue
else:
val = state_dict.pop(key)
state_dict[prefix + key] = val
else:
if not key.startswith("class_labels_classifier") and not key.startswith("bbox_predictor"):
val = state_dict.pop(key)
state_dict[prefix + key] = val
# finally, create HuggingFace model and load state dict
model = ConditionalDetrForSegmentation(config) if is_panoptic else ConditionalDetrForObjectDetection(config)
model.load_state_dict(state_dict)
model.eval()
model.push_to_hub(repo_id=model_name, organization="DepuMeng", commit_message="Add model")
# verify our conversion
original_outputs = conditional_detr(pixel_values)
outputs = model(pixel_values)
assert torch.allclose(outputs.logits, original_outputs["pred_logits"], atol=1e-4)
assert torch.allclose(outputs.pred_boxes, original_outputs["pred_boxes"], atol=1e-4)
if is_panoptic:
assert torch.allclose(outputs.pred_masks, original_outputs["pred_masks"], atol=1e-4)
# Save model and image processor
logger.info(f"Saving PyTorch model and image processor to {pytorch_dump_folder_path}...")
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
model.save_pretrained(pytorch_dump_folder_path)
image_processor.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_name",
default="conditional_detr_resnet50",
type=str,
help="Name of the CONDITIONAL_DETR model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the folder to output PyTorch model."
)
args = parser.parse_args()
convert_conditional_detr_checkpoint(args.model_name, args.pytorch_dump_folder_path)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/__init__.py
|
# Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_conditional_detr": [
"CONDITIONAL_DETR_PRETRAINED_CONFIG_ARCHIVE_MAP",
"ConditionalDetrConfig",
"ConditionalDetrOnnxConfig",
]
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_conditional_detr"] = ["ConditionalDetrFeatureExtractor"]
_import_structure["image_processing_conditional_detr"] = ["ConditionalDetrImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_conditional_detr"] = [
"CONDITIONAL_DETR_PRETRAINED_MODEL_ARCHIVE_LIST",
"ConditionalDetrForObjectDetection",
"ConditionalDetrForSegmentation",
"ConditionalDetrModel",
"ConditionalDetrPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_conditional_detr import (
CONDITIONAL_DETR_PRETRAINED_CONFIG_ARCHIVE_MAP,
ConditionalDetrConfig,
ConditionalDetrOnnxConfig,
)
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_conditional_detr import ConditionalDetrFeatureExtractor
from .image_processing_conditional_detr import ConditionalDetrImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_conditional_detr import (
CONDITIONAL_DETR_PRETRAINED_MODEL_ARCHIVE_LIST,
ConditionalDetrForObjectDetection,
ConditionalDetrForSegmentation,
ConditionalDetrModel,
ConditionalDetrPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/feature_extraction_conditional_detr.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for Conditional DETR."""
import warnings
from ...image_transforms import rgb_to_id as _rgb_to_id
from ...utils import logging
from .image_processing_conditional_detr import ConditionalDetrImageProcessor
logger = logging.get_logger(__name__)
def rgb_to_id(x):
warnings.warn(
"rgb_to_id has moved and will not be importable from this module from v5. "
"Please import from transformers.image_transforms instead.",
FutureWarning,
)
return _rgb_to_id(x)
class ConditionalDetrFeatureExtractor(ConditionalDetrImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class ConditionalDetrFeatureExtractor is deprecated and will be removed in version 5 of Transformers."
" Please use ConditionalDetrImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/modeling_conditional_detr.py
|
# coding=utf-8
# Copyright 2022 Microsoft Research Asia and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Conditional DETR model."""
import math
from dataclasses import dataclass
from typing import Dict, List, Optional, Tuple, Union
import torch
from torch import Tensor, nn
from ...activations import ACT2FN
from ...modeling_attn_mask_utils import _prepare_4d_attention_mask
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithCrossAttentions, Seq2SeqModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_accelerate_available,
is_scipy_available,
is_timm_available,
is_vision_available,
logging,
replace_return_docstrings,
requires_backends,
)
from ...utils.backbone_utils import load_backbone
from .configuration_conditional_detr import ConditionalDetrConfig
if is_accelerate_available():
from accelerate import PartialState
from accelerate.utils import reduce
if is_scipy_available():
from scipy.optimize import linear_sum_assignment
if is_timm_available():
from timm import create_model
if is_vision_available():
from ...image_transforms import center_to_corners_format
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "ConditionalDetrConfig"
_CHECKPOINT_FOR_DOC = "microsoft/conditional-detr-resnet-50"
from ..deprecated._archive_maps import CONDITIONAL_DETR_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
class ConditionalDetrDecoderOutput(BaseModelOutputWithCrossAttentions):
"""
Base class for outputs of the Conditional DETR decoder. This class adds one attribute to
BaseModelOutputWithCrossAttentions, namely an optional stack of intermediate decoder activations, i.e. the output
of each decoder layer, each of them gone through a layernorm. This is useful when training the model with auxiliary
decoding losses.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights after the attention softmax, used to compute the weighted average in
the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` and `config.add_cross_attention=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
intermediate_hidden_states (`torch.FloatTensor` of shape `(config.decoder_layers, batch_size, num_queries, hidden_size)`, *optional*, returned when `config.auxiliary_loss=True`):
Intermediate decoder activations, i.e. the output of each decoder layer, each of them gone through a
layernorm.
"""
intermediate_hidden_states: Optional[torch.FloatTensor] = None
reference_points: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class ConditionalDetrModelOutput(Seq2SeqModelOutput):
"""
Base class for outputs of the Conditional DETR encoder-decoder model. This class adds one attribute to
Seq2SeqModelOutput, namely an optional stack of intermediate decoder activations, i.e. the output of each decoder
layer, each of them gone through a layernorm. This is useful when training the model with auxiliary decoding
losses.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the decoder at the output of each
layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the encoder at the output of each
layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the encoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
intermediate_hidden_states (`torch.FloatTensor` of shape `(config.decoder_layers, batch_size, sequence_length, hidden_size)`, *optional*, returned when `config.auxiliary_loss=True`):
Intermediate decoder activations, i.e. the output of each decoder layer, each of them gone through a
layernorm.
"""
intermediate_hidden_states: Optional[torch.FloatTensor] = None
reference_points: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
# Copied from transformers.models.detr.modeling_detr.DetrObjectDetectionOutput with Detr->ConditionalDetr
class ConditionalDetrObjectDetectionOutput(ModelOutput):
"""
Output type of [`ConditionalDetrForObjectDetection`].
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` are provided)):
Total loss as a linear combination of a negative log-likehood (cross-entropy) for class prediction and a
bounding box loss. The latter is defined as a linear combination of the L1 loss and the generalized
scale-invariant IoU loss.
loss_dict (`Dict`, *optional*):
A dictionary containing the individual losses. Useful for logging.
logits (`torch.FloatTensor` of shape `(batch_size, num_queries, num_classes + 1)`):
Classification logits (including no-object) for all queries.
pred_boxes (`torch.FloatTensor` of shape `(batch_size, num_queries, 4)`):
Normalized boxes coordinates for all queries, represented as (center_x, center_y, width, height). These
values are normalized in [0, 1], relative to the size of each individual image in the batch (disregarding
possible padding). You can use [`~ConditionalDetrImageProcessor.post_process_object_detection`] to retrieve the
unnormalized bounding boxes.
auxiliary_outputs (`list[Dict]`, *optional*):
Optional, only returned when auxilary losses are activated (i.e. `config.auxiliary_loss` is set to `True`)
and labels are provided. It is a list of dictionaries containing the two above keys (`logits` and
`pred_boxes`) for each decoder layer.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the decoder at the output of each
layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the encoder at the output of each
layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the encoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
loss_dict: Optional[Dict] = None
logits: torch.FloatTensor = None
pred_boxes: torch.FloatTensor = None
auxiliary_outputs: Optional[List[Dict]] = None
last_hidden_state: Optional[torch.FloatTensor] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
# Copied from transformers.models.detr.modeling_detr.DetrSegmentationOutput with Detr->ConditionalDetr
class ConditionalDetrSegmentationOutput(ModelOutput):
"""
Output type of [`ConditionalDetrForSegmentation`].
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` are provided)):
Total loss as a linear combination of a negative log-likehood (cross-entropy) for class prediction and a
bounding box loss. The latter is defined as a linear combination of the L1 loss and the generalized
scale-invariant IoU loss.
loss_dict (`Dict`, *optional*):
A dictionary containing the individual losses. Useful for logging.
logits (`torch.FloatTensor` of shape `(batch_size, num_queries, num_classes + 1)`):
Classification logits (including no-object) for all queries.
pred_boxes (`torch.FloatTensor` of shape `(batch_size, num_queries, 4)`):
Normalized boxes coordinates for all queries, represented as (center_x, center_y, width, height). These
values are normalized in [0, 1], relative to the size of each individual image in the batch (disregarding
possible padding). You can use [`~ConditionalDetrImageProcessor.post_process_object_detection`] to retrieve the
unnormalized bounding boxes.
pred_masks (`torch.FloatTensor` of shape `(batch_size, num_queries, height/4, width/4)`):
Segmentation masks logits for all queries. See also
[`~ConditionalDetrImageProcessor.post_process_semantic_segmentation`] or
[`~ConditionalDetrImageProcessor.post_process_instance_segmentation`]
[`~ConditionalDetrImageProcessor.post_process_panoptic_segmentation`] to evaluate semantic, instance and panoptic
segmentation masks respectively.
auxiliary_outputs (`list[Dict]`, *optional*):
Optional, only returned when auxiliary losses are activated (i.e. `config.auxiliary_loss` is set to `True`)
and labels are provided. It is a list of dictionaries containing the two above keys (`logits` and
`pred_boxes`) for each decoder layer.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the decoder of the model.
decoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the decoder at the output of each
layer plus the initial embedding outputs.
decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
cross_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the decoder's cross-attention layer, after the attention softmax,
used to compute the weighted average in the cross-attention heads.
encoder_last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder of the model.
encoder_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the encoder at the output of each
layer plus the initial embedding outputs.
encoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`. Attentions weights of the encoder, after the attention softmax, used to compute the
weighted average in the self-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
loss_dict: Optional[Dict] = None
logits: torch.FloatTensor = None
pred_boxes: torch.FloatTensor = None
pred_masks: torch.FloatTensor = None
auxiliary_outputs: Optional[List[Dict]] = None
last_hidden_state: Optional[torch.FloatTensor] = None
decoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
decoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
cross_attentions: Optional[Tuple[torch.FloatTensor]] = None
encoder_last_hidden_state: Optional[torch.FloatTensor] = None
encoder_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
encoder_attentions: Optional[Tuple[torch.FloatTensor]] = None
# Copied from transformers.models.detr.modeling_detr.DetrFrozenBatchNorm2d with Detr->ConditionalDetr
class ConditionalDetrFrozenBatchNorm2d(nn.Module):
"""
BatchNorm2d where the batch statistics and the affine parameters are fixed.
Copy-paste from torchvision.misc.ops with added eps before rqsrt, without which any other models than
torchvision.models.resnet[18,34,50,101] produce nans.
"""
def __init__(self, n):
super().__init__()
self.register_buffer("weight", torch.ones(n))
self.register_buffer("bias", torch.zeros(n))
self.register_buffer("running_mean", torch.zeros(n))
self.register_buffer("running_var", torch.ones(n))
def _load_from_state_dict(
self, state_dict, prefix, local_metadata, strict, missing_keys, unexpected_keys, error_msgs
):
num_batches_tracked_key = prefix + "num_batches_tracked"
if num_batches_tracked_key in state_dict:
del state_dict[num_batches_tracked_key]
super()._load_from_state_dict(
state_dict, prefix, local_metadata, strict, missing_keys, unexpected_keys, error_msgs
)
def forward(self, x):
# move reshapes to the beginning
# to make it user-friendly
weight = self.weight.reshape(1, -1, 1, 1)
bias = self.bias.reshape(1, -1, 1, 1)
running_var = self.running_var.reshape(1, -1, 1, 1)
running_mean = self.running_mean.reshape(1, -1, 1, 1)
epsilon = 1e-5
scale = weight * (running_var + epsilon).rsqrt()
bias = bias - running_mean * scale
return x * scale + bias
# Copied from transformers.models.detr.modeling_detr.replace_batch_norm with Detr->ConditionalDetr
def replace_batch_norm(model):
r"""
Recursively replace all `torch.nn.BatchNorm2d` with `ConditionalDetrFrozenBatchNorm2d`.
Args:
model (torch.nn.Module):
input model
"""
for name, module in model.named_children():
if isinstance(module, nn.BatchNorm2d):
new_module = ConditionalDetrFrozenBatchNorm2d(module.num_features)
if not module.weight.device == torch.device("meta"):
new_module.weight.data.copy_(module.weight)
new_module.bias.data.copy_(module.bias)
new_module.running_mean.data.copy_(module.running_mean)
new_module.running_var.data.copy_(module.running_var)
model._modules[name] = new_module
if len(list(module.children())) > 0:
replace_batch_norm(module)
# Copied from transformers.models.detr.modeling_detr.DetrConvEncoder with Detr->ConditionalDetr
class ConditionalDetrConvEncoder(nn.Module):
"""
Convolutional backbone, using either the AutoBackbone API or one from the timm library.
nn.BatchNorm2d layers are replaced by ConditionalDetrFrozenBatchNorm2d as defined above.
"""
def __init__(self, config):
super().__init__()
self.config = config
# For backwards compatibility we have to use the timm library directly instead of the AutoBackbone API
if config.use_timm_backbone:
# We default to values which were previously hard-coded. This enables configurability from the config
# using backbone arguments, while keeping the default behavior the same.
requires_backends(self, ["timm"])
kwargs = getattr(config, "backbone_kwargs", {})
kwargs = {} if kwargs is None else kwargs.copy()
out_indices = kwargs.pop("out_indices", (1, 2, 3, 4))
num_channels = kwargs.pop("in_chans", config.num_channels)
if config.dilation:
kwargs["output_stride"] = kwargs.get("output_stride", 16)
backbone = create_model(
config.backbone,
pretrained=config.use_pretrained_backbone,
features_only=True,
out_indices=out_indices,
in_chans=num_channels,
**kwargs,
)
else:
backbone = load_backbone(config)
# replace batch norm by frozen batch norm
with torch.no_grad():
replace_batch_norm(backbone)
self.model = backbone
self.intermediate_channel_sizes = (
self.model.feature_info.channels() if config.use_timm_backbone else self.model.channels
)
backbone_model_type = config.backbone if config.use_timm_backbone else config.backbone_config.model_type
if "resnet" in backbone_model_type:
for name, parameter in self.model.named_parameters():
if config.use_timm_backbone:
if "layer2" not in name and "layer3" not in name and "layer4" not in name:
parameter.requires_grad_(False)
else:
if "stage.1" not in name and "stage.2" not in name and "stage.3" not in name:
parameter.requires_grad_(False)
def forward(self, pixel_values: torch.Tensor, pixel_mask: torch.Tensor):
# send pixel_values through the model to get list of feature maps
features = self.model(pixel_values) if self.config.use_timm_backbone else self.model(pixel_values).feature_maps
out = []
for feature_map in features:
# downsample pixel_mask to match shape of corresponding feature_map
mask = nn.functional.interpolate(pixel_mask[None].float(), size=feature_map.shape[-2:]).to(torch.bool)[0]
out.append((feature_map, mask))
return out
# Copied from transformers.models.detr.modeling_detr.DetrConvModel with Detr->ConditionalDetr
class ConditionalDetrConvModel(nn.Module):
"""
This module adds 2D position embeddings to all intermediate feature maps of the convolutional encoder.
"""
def __init__(self, conv_encoder, position_embedding):
super().__init__()
self.conv_encoder = conv_encoder
self.position_embedding = position_embedding
def forward(self, pixel_values, pixel_mask):
# send pixel_values and pixel_mask through backbone to get list of (feature_map, pixel_mask) tuples
out = self.conv_encoder(pixel_values, pixel_mask)
pos = []
for feature_map, mask in out:
# position encoding
pos.append(self.position_embedding(feature_map, mask).to(feature_map.dtype))
return out, pos
class ConditionalDetrSinePositionEmbedding(nn.Module):
"""
This is a more standard version of the position embedding, very similar to the one used by the Attention is all you
need paper, generalized to work on images.
"""
def __init__(self, embedding_dim=64, temperature=10000, normalize=False, scale=None):
super().__init__()
self.embedding_dim = embedding_dim
self.temperature = temperature
self.normalize = normalize
if scale is not None and normalize is False:
raise ValueError("normalize should be True if scale is passed")
if scale is None:
scale = 2 * math.pi
self.scale = scale
def forward(self, pixel_values, pixel_mask):
if pixel_mask is None:
raise ValueError("No pixel mask provided")
y_embed = pixel_mask.cumsum(1, dtype=torch.float32)
x_embed = pixel_mask.cumsum(2, dtype=torch.float32)
if self.normalize:
y_embed = y_embed / (y_embed[:, -1:, :] + 1e-6) * self.scale
x_embed = x_embed / (x_embed[:, :, -1:] + 1e-6) * self.scale
dim_t = torch.arange(self.embedding_dim, dtype=torch.int64, device=pixel_values.device).float()
dim_t = self.temperature ** (2 * torch.div(dim_t, 2, rounding_mode="floor") / self.embedding_dim)
pos_x = x_embed[:, :, :, None] / dim_t
pos_y = y_embed[:, :, :, None] / dim_t
pos_x = torch.stack((pos_x[:, :, :, 0::2].sin(), pos_x[:, :, :, 1::2].cos()), dim=4).flatten(3)
pos_y = torch.stack((pos_y[:, :, :, 0::2].sin(), pos_y[:, :, :, 1::2].cos()), dim=4).flatten(3)
pos = torch.cat((pos_y, pos_x), dim=3).permute(0, 3, 1, 2)
return pos
# Copied from transformers.models.detr.modeling_detr.DetrLearnedPositionEmbedding with Detr->ConditionalDetr
class ConditionalDetrLearnedPositionEmbedding(nn.Module):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, embedding_dim=256):
super().__init__()
self.row_embeddings = nn.Embedding(50, embedding_dim)
self.column_embeddings = nn.Embedding(50, embedding_dim)
def forward(self, pixel_values, pixel_mask=None):
height, width = pixel_values.shape[-2:]
width_values = torch.arange(width, device=pixel_values.device)
height_values = torch.arange(height, device=pixel_values.device)
x_emb = self.column_embeddings(width_values)
y_emb = self.row_embeddings(height_values)
pos = torch.cat([x_emb.unsqueeze(0).repeat(height, 1, 1), y_emb.unsqueeze(1).repeat(1, width, 1)], dim=-1)
pos = pos.permute(2, 0, 1)
pos = pos.unsqueeze(0)
pos = pos.repeat(pixel_values.shape[0], 1, 1, 1)
return pos
# Copied from transformers.models.detr.modeling_detr.build_position_encoding with Detr->ConditionalDetr
def build_position_encoding(config):
n_steps = config.d_model // 2
if config.position_embedding_type == "sine":
# TODO find a better way of exposing other arguments
position_embedding = ConditionalDetrSinePositionEmbedding(n_steps, normalize=True)
elif config.position_embedding_type == "learned":
position_embedding = ConditionalDetrLearnedPositionEmbedding(n_steps)
else:
raise ValueError(f"Not supported {config.position_embedding_type}")
return position_embedding
# function to generate sine positional embedding for 2d coordinates
def gen_sine_position_embeddings(pos_tensor, d_model):
scale = 2 * math.pi
dim = d_model // 2
dim_t = torch.arange(dim, dtype=torch.float32, device=pos_tensor.device)
dim_t = 10000 ** (2 * torch.div(dim_t, 2, rounding_mode="floor") / dim)
x_embed = pos_tensor[:, :, 0] * scale
y_embed = pos_tensor[:, :, 1] * scale
pos_x = x_embed[:, :, None] / dim_t
pos_y = y_embed[:, :, None] / dim_t
pos_x = torch.stack((pos_x[:, :, 0::2].sin(), pos_x[:, :, 1::2].cos()), dim=3).flatten(2)
pos_y = torch.stack((pos_y[:, :, 0::2].sin(), pos_y[:, :, 1::2].cos()), dim=3).flatten(2)
pos = torch.cat((pos_y, pos_x), dim=2)
return pos
def inverse_sigmoid(x, eps=1e-5):
x = x.clamp(min=0, max=1)
x1 = x.clamp(min=eps)
x2 = (1 - x).clamp(min=eps)
return torch.log(x1 / x2)
# Copied from transformers.models.detr.modeling_detr.DetrAttention
class DetrAttention(nn.Module):
"""
Multi-headed attention from 'Attention Is All You Need' paper.
Here, we add position embeddings to the queries and keys (as explained in the DETR paper).
"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
bias: bool = True,
):
super().__init__()
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if self.head_dim * num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.k_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.v_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.q_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
self.out_proj = nn.Linear(embed_dim, embed_dim, bias=bias)
def _shape(self, tensor: torch.Tensor, seq_len: int, batch_size: int):
return tensor.view(batch_size, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def with_pos_embed(self, tensor: torch.Tensor, object_queries: Optional[Tensor], **kwargs):
position_embeddings = kwargs.pop("position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
return tensor if object_queries is None else tensor + object_queries
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
object_queries: Optional[torch.Tensor] = None,
key_value_states: Optional[torch.Tensor] = None,
spatial_position_embeddings: Optional[torch.Tensor] = None,
output_attentions: bool = False,
**kwargs,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
position_embeddings = kwargs.pop("position_ebmeddings", None)
key_value_position_embeddings = kwargs.pop("key_value_position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if key_value_position_embeddings is not None and spatial_position_embeddings is not None:
raise ValueError(
"Cannot specify both key_value_position_embeddings and spatial_position_embeddings. Please use just spatial_position_embeddings"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
if key_value_position_embeddings is not None:
logger.warning_once(
"key_value_position_embeddings has been deprecated and will be removed in v4.34. Please use spatial_position_embeddings instead"
)
spatial_position_embeddings = key_value_position_embeddings
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size, target_len, embed_dim = hidden_states.size()
# add position embeddings to the hidden states before projecting to queries and keys
if object_queries is not None:
hidden_states_original = hidden_states
hidden_states = self.with_pos_embed(hidden_states, object_queries)
# add key-value position embeddings to the key value states
if spatial_position_embeddings is not None:
key_value_states_original = key_value_states
key_value_states = self.with_pos_embed(key_value_states, spatial_position_embeddings)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, batch_size)
value_states = self._shape(self.v_proj(key_value_states_original), -1, batch_size)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, batch_size)
value_states = self._shape(self.v_proj(hidden_states_original), -1, batch_size)
proj_shape = (batch_size * self.num_heads, -1, self.head_dim)
query_states = self._shape(query_states, target_len, batch_size).view(*proj_shape)
key_states = key_states.view(*proj_shape)
value_states = value_states.view(*proj_shape)
source_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (batch_size * self.num_heads, target_len, source_len):
raise ValueError(
f"Attention weights should be of size {(batch_size * self.num_heads, target_len, source_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (batch_size, 1, target_len, source_len):
raise ValueError(
f"Attention mask should be of size {(batch_size, 1, target_len, source_len)}, but is"
f" {attention_mask.size()}"
)
attn_weights = attn_weights.view(batch_size, self.num_heads, target_len, source_len) + attention_mask
attn_weights = attn_weights.view(batch_size * self.num_heads, target_len, source_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(batch_size, self.num_heads, target_len, source_len)
attn_weights = attn_weights_reshaped.view(batch_size * self.num_heads, target_len, source_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (batch_size * self.num_heads, target_len, self.head_dim):
raise ValueError(
f"`attn_output` should be of size {(batch_size, self.num_heads, target_len, self.head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(batch_size, self.num_heads, target_len, self.head_dim)
attn_output = attn_output.transpose(1, 2)
attn_output = attn_output.reshape(batch_size, target_len, embed_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped
class ConditionalDetrAttention(nn.Module):
"""
Cross-Attention used in Conditional DETR 'Conditional DETR for Fast Training Convergence' paper.
The key q_proj, k_proj, v_proj are defined outside the attention. This attention allows the dim of q, k to be
different to v.
"""
def __init__(
self,
embed_dim: int,
out_dim: int,
num_heads: int,
dropout: float = 0.0,
bias: bool = True,
):
super().__init__()
self.embed_dim = embed_dim
self.out_dim = out_dim
self.num_heads = num_heads
self.dropout = dropout
self.head_dim = embed_dim // num_heads
if self.head_dim * num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {num_heads})."
)
# head dimension of values
self.v_head_dim = out_dim // num_heads
if self.v_head_dim * num_heads != self.out_dim:
raise ValueError(
f"out_dim must be divisible by num_heads (got `out_dim`: {self.out_dim} and `num_heads`: {num_heads})."
)
self.scaling = self.head_dim**-0.5
self.out_proj = nn.Linear(out_dim, out_dim, bias=bias)
def _qk_shape(self, tensor: torch.Tensor, seq_len: int, batch_size: int):
return tensor.view(batch_size, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def _v_shape(self, tensor: torch.Tensor, seq_len: int, batch_size: int):
return tensor.view(batch_size, seq_len, self.num_heads, self.v_head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
key_states: Optional[torch.Tensor] = None,
value_states: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
batch_size, target_len, _ = hidden_states.size()
# get query proj
query_states = hidden_states * self.scaling
# get key, value proj
key_states = self._qk_shape(key_states, -1, batch_size)
value_states = self._v_shape(value_states, -1, batch_size)
proj_shape = (batch_size * self.num_heads, -1, self.head_dim)
v_proj_shape = (batch_size * self.num_heads, -1, self.v_head_dim)
query_states = self._qk_shape(query_states, target_len, batch_size).view(*proj_shape)
key_states = key_states.view(*proj_shape)
value_states = value_states.view(*v_proj_shape)
source_len = key_states.size(1)
attn_weights = torch.bmm(query_states, key_states.transpose(1, 2))
if attn_weights.size() != (batch_size * self.num_heads, target_len, source_len):
raise ValueError(
f"Attention weights should be of size {(batch_size * self.num_heads, target_len, source_len)}, but is"
f" {attn_weights.size()}"
)
if attention_mask is not None:
if attention_mask.size() != (batch_size, 1, target_len, source_len):
raise ValueError(
f"Attention mask should be of size {(batch_size, 1, target_len, source_len)}, but is"
f" {attention_mask.size()}"
)
attn_weights = attn_weights.view(batch_size, self.num_heads, target_len, source_len) + attention_mask
attn_weights = attn_weights.view(batch_size * self.num_heads, target_len, source_len)
attn_weights = nn.functional.softmax(attn_weights, dim=-1)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(batch_size, self.num_heads, target_len, source_len)
attn_weights = attn_weights_reshaped.view(batch_size * self.num_heads, target_len, source_len)
else:
attn_weights_reshaped = None
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = torch.bmm(attn_probs, value_states)
if attn_output.size() != (batch_size * self.num_heads, target_len, self.v_head_dim):
raise ValueError(
f"`attn_output` should be of size {(batch_size, self.num_heads, target_len, self.v_head_dim)}, but is"
f" {attn_output.size()}"
)
attn_output = attn_output.view(batch_size, self.num_heads, target_len, self.v_head_dim)
attn_output = attn_output.transpose(1, 2)
attn_output = attn_output.reshape(batch_size, target_len, self.out_dim)
attn_output = self.out_proj(attn_output)
return attn_output, attn_weights_reshaped
# Copied from transformers.models.detr.modeling_detr.DetrEncoderLayer with DetrEncoderLayer->ConditionalDetrEncoderLayer,DetrConfig->ConditionalDetrConfig
class ConditionalDetrEncoderLayer(nn.Module):
def __init__(self, config: ConditionalDetrConfig):
super().__init__()
self.embed_dim = config.d_model
self.self_attn = DetrAttention(
embed_dim=self.embed_dim,
num_heads=config.encoder_attention_heads,
dropout=config.attention_dropout,
)
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.fc1 = nn.Linear(self.embed_dim, config.encoder_ffn_dim)
self.fc2 = nn.Linear(config.encoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
object_queries: torch.Tensor = None,
output_attentions: bool = False,
**kwargs,
):
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, target_len, source_len)` where padding elements are indicated by very large negative
values.
object_queries (`torch.FloatTensor`, *optional*):
Object queries (also called content embeddings), to be added to the hidden states.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
position_embeddings = kwargs.pop("position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
residual = hidden_states
hidden_states, attn_weights = self.self_attn(
hidden_states=hidden_states,
attention_mask=attention_mask,
object_queries=object_queries,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
if self.training:
if torch.isinf(hidden_states).any() or torch.isnan(hidden_states).any():
clamp_value = torch.finfo(hidden_states.dtype).max - 1000
hidden_states = torch.clamp(hidden_states, min=-clamp_value, max=clamp_value)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class ConditionalDetrDecoderLayer(nn.Module):
def __init__(self, config: ConditionalDetrConfig):
super().__init__()
self.embed_dim = config.d_model
d_model = config.d_model
# Decoder Self-Attention projections
self.sa_qcontent_proj = nn.Linear(d_model, d_model)
self.sa_qpos_proj = nn.Linear(d_model, d_model)
self.sa_kcontent_proj = nn.Linear(d_model, d_model)
self.sa_kpos_proj = nn.Linear(d_model, d_model)
self.sa_v_proj = nn.Linear(d_model, d_model)
self.self_attn = ConditionalDetrAttention(
embed_dim=self.embed_dim,
out_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
)
self.dropout = config.dropout
self.activation_fn = ACT2FN[config.activation_function]
self.activation_dropout = config.activation_dropout
self.self_attn_layer_norm = nn.LayerNorm(self.embed_dim)
# Decoder Cross-Attention projections
self.ca_qcontent_proj = nn.Linear(d_model, d_model)
self.ca_qpos_proj = nn.Linear(d_model, d_model)
self.ca_kcontent_proj = nn.Linear(d_model, d_model)
self.ca_kpos_proj = nn.Linear(d_model, d_model)
self.ca_v_proj = nn.Linear(d_model, d_model)
self.ca_qpos_sine_proj = nn.Linear(d_model, d_model)
self.encoder_attn = ConditionalDetrAttention(
self.embed_dim * 2, self.embed_dim, config.decoder_attention_heads, dropout=config.attention_dropout
)
self.encoder_attn_layer_norm = nn.LayerNorm(self.embed_dim)
self.fc1 = nn.Linear(self.embed_dim, config.decoder_ffn_dim)
self.fc2 = nn.Linear(config.decoder_ffn_dim, self.embed_dim)
self.final_layer_norm = nn.LayerNorm(self.embed_dim)
self.nhead = config.decoder_attention_heads
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
object_queries: Optional[torch.Tensor] = None,
query_position_embeddings: Optional[torch.Tensor] = None,
query_sine_embed: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
is_first: Optional[bool] = False,
**kwargs,
):
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(seq_len, batch, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, target_len, source_len)` where padding elements are indicated by very large negative
values.
object_queries (`torch.FloatTensor`, *optional*):
object_queries that are added to the queries and keys
in the cross-attention layer.
query_position_embeddings (`torch.FloatTensor`, *optional*):
object_queries that are added to the queries and keys
in the self-attention layer.
encoder_hidden_states (`torch.FloatTensor`):
cross attention input to the layer of shape `(seq_len, batch, embed_dim)`
encoder_attention_mask (`torch.FloatTensor`): encoder attention mask of size
`(batch, 1, target_len, source_len)` where padding elements are indicated by very large negative
values.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
position_embeddings = kwargs.pop("position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
residual = hidden_states
# ========== Begin of Self-Attention =============
# Apply projections here
# shape: num_queries x batch_size x 256
q_content = self.sa_qcontent_proj(
hidden_states
) # target is the input of the first decoder layer. zero by default.
q_pos = self.sa_qpos_proj(query_position_embeddings)
k_content = self.sa_kcontent_proj(hidden_states)
k_pos = self.sa_kpos_proj(query_position_embeddings)
v = self.sa_v_proj(hidden_states)
_, num_queries, n_model = q_content.shape
q = q_content + q_pos
k = k_content + k_pos
hidden_states, self_attn_weights = self.self_attn(
hidden_states=q,
attention_mask=attention_mask,
key_states=k,
value_states=v,
output_attentions=output_attentions,
)
# ============ End of Self-Attention =============
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# ========== Begin of Cross-Attention =============
# Apply projections here
# shape: num_queries x batch_size x 256
q_content = self.ca_qcontent_proj(hidden_states)
k_content = self.ca_kcontent_proj(encoder_hidden_states)
v = self.ca_v_proj(encoder_hidden_states)
batch_size, num_queries, n_model = q_content.shape
_, source_len, _ = k_content.shape
k_pos = self.ca_kpos_proj(object_queries)
# For the first decoder layer, we concatenate the positional embedding predicted from
# the object query (the positional embedding) into the original query (key) in DETR.
if is_first:
q_pos = self.ca_qpos_proj(query_position_embeddings)
q = q_content + q_pos
k = k_content + k_pos
else:
q = q_content
k = k_content
q = q.view(batch_size, num_queries, self.nhead, n_model // self.nhead)
query_sine_embed = self.ca_qpos_sine_proj(query_sine_embed)
query_sine_embed = query_sine_embed.view(batch_size, num_queries, self.nhead, n_model // self.nhead)
q = torch.cat([q, query_sine_embed], dim=3).view(batch_size, num_queries, n_model * 2)
k = k.view(batch_size, source_len, self.nhead, n_model // self.nhead)
k_pos = k_pos.view(batch_size, source_len, self.nhead, n_model // self.nhead)
k = torch.cat([k, k_pos], dim=3).view(batch_size, source_len, n_model * 2)
# Cross-Attention Block
cross_attn_weights = None
if encoder_hidden_states is not None:
residual = hidden_states
hidden_states, cross_attn_weights = self.encoder_attn(
hidden_states=q,
attention_mask=encoder_attention_mask,
key_states=k,
value_states=v,
output_attentions=output_attentions,
)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# ============ End of Cross-Attention =============
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = nn.functional.dropout(hidden_states, p=self.activation_dropout, training=self.training)
hidden_states = self.fc2(hidden_states)
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
outputs = (hidden_states,)
if output_attentions:
outputs += (self_attn_weights, cross_attn_weights)
return outputs
# Copied from transformers.models.detr.modeling_detr.DetrClassificationHead with Detr->ConditionalDetr
class ConditionalDetrClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, input_dim: int, inner_dim: int, num_classes: int, pooler_dropout: float):
super().__init__()
self.dense = nn.Linear(input_dim, inner_dim)
self.dropout = nn.Dropout(p=pooler_dropout)
self.out_proj = nn.Linear(inner_dim, num_classes)
def forward(self, hidden_states: torch.Tensor):
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
# Copied from transformers.models.detr.modeling_detr.DetrMLPPredictionHead with DetrMLPPredictionHead->MLP
class MLP(nn.Module):
"""
Very simple multi-layer perceptron (MLP, also called FFN), used to predict the normalized center coordinates,
height and width of a bounding box w.r.t. an image.
Copied from https://github.com/facebookresearch/detr/blob/master/models/detr.py
"""
def __init__(self, input_dim, hidden_dim, output_dim, num_layers):
super().__init__()
self.num_layers = num_layers
h = [hidden_dim] * (num_layers - 1)
self.layers = nn.ModuleList(nn.Linear(n, k) for n, k in zip([input_dim] + h, h + [output_dim]))
def forward(self, x):
for i, layer in enumerate(self.layers):
x = nn.functional.relu(layer(x)) if i < self.num_layers - 1 else layer(x)
return x
# Copied from transformers.models.detr.modeling_detr.DetrPreTrainedModel with Detr->ConditionalDetr
class ConditionalDetrPreTrainedModel(PreTrainedModel):
config_class = ConditionalDetrConfig
base_model_prefix = "model"
main_input_name = "pixel_values"
_no_split_modules = [r"ConditionalDetrConvEncoder", r"ConditionalDetrEncoderLayer", r"ConditionalDetrDecoderLayer"]
def _init_weights(self, module):
std = self.config.init_std
xavier_std = self.config.init_xavier_std
if isinstance(module, ConditionalDetrMHAttentionMap):
nn.init.zeros_(module.k_linear.bias)
nn.init.zeros_(module.q_linear.bias)
nn.init.xavier_uniform_(module.k_linear.weight, gain=xavier_std)
nn.init.xavier_uniform_(module.q_linear.weight, gain=xavier_std)
elif isinstance(module, ConditionalDetrLearnedPositionEmbedding):
nn.init.uniform_(module.row_embeddings.weight)
nn.init.uniform_(module.column_embeddings.weight)
if isinstance(module, (nn.Linear, nn.Conv2d, nn.BatchNorm2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
CONDITIONAL_DETR_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`ConditionalDetrConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
CONDITIONAL_DETR_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it.
Pixel values can be obtained using [`AutoImageProcessor`]. See [`ConditionalDetrImageProcessor.__call__`]
for details.
pixel_mask (`torch.LongTensor` of shape `(batch_size, height, width)`, *optional*):
Mask to avoid performing attention on padding pixel values. Mask values selected in `[0, 1]`:
- 1 for pixels that are real (i.e. **not masked**),
- 0 for pixels that are padding (i.e. **masked**).
[What are attention masks?](../glossary#attention-mask)
decoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, num_queries)`, *optional*):
Not used by default. Can be used to mask object queries.
encoder_outputs (`tuple(tuple(torch.FloatTensor)`, *optional*):
Tuple consists of (`last_hidden_state`, *optional*: `hidden_states`, *optional*: `attentions`)
`last_hidden_state` of shape `(batch_size, sequence_length, hidden_size)`, *optional*) is a sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing the flattened feature map (output of the backbone + projection layer), you
can choose to directly pass a flattened representation of an image.
decoder_inputs_embeds (`torch.FloatTensor` of shape `(batch_size, num_queries, hidden_size)`, *optional*):
Optionally, instead of initializing the queries with a tensor of zeros, you can choose to directly pass an
embedded representation.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Copied from transformers.models.detr.modeling_detr.DetrEncoder with Detr->ConditionalDetr,DETR->ConditionalDETR
class ConditionalDetrEncoder(ConditionalDetrPreTrainedModel):
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
[`ConditionalDetrEncoderLayer`].
The encoder updates the flattened feature map through multiple self-attention layers.
Small tweak for ConditionalDETR:
- object_queries are added to the forward pass.
Args:
config: ConditionalDetrConfig
"""
def __init__(self, config: ConditionalDetrConfig):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.encoder_layerdrop
self.layers = nn.ModuleList([ConditionalDetrEncoderLayer(config) for _ in range(config.encoder_layers)])
# in the original ConditionalDETR, no layernorm is used at the end of the encoder, as "normalize_before" is set to False by default
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
inputs_embeds=None,
attention_mask=None,
object_queries=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
**kwargs,
):
r"""
Args:
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Flattened feature map (output of the backbone + projection layer) that is passed to the encoder.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding pixel features. Mask values selected in `[0, 1]`:
- 1 for pixel features that are real (i.e. **not masked**),
- 0 for pixel features that are padding (i.e. **masked**).
[What are attention masks?](../glossary#attention-mask)
object_queries (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Object queries that are added to the queries in each self-attention layer.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
position_embeddings = kwargs.pop("position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
hidden_states = inputs_embeds
hidden_states = nn.functional.dropout(hidden_states, p=self.dropout, training=self.training)
# expand attention_mask
if attention_mask is not None:
# [batch_size, seq_len] -> [batch_size, 1, target_seq_len, source_seq_len]
attention_mask = _prepare_4d_attention_mask(attention_mask, inputs_embeds.dtype)
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
to_drop = False
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop: # skip the layer
to_drop = True
if to_drop:
layer_outputs = (None, None)
else:
# we add object_queries as extra input to the encoder_layer
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
object_queries=object_queries,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
class ConditionalDetrDecoder(ConditionalDetrPreTrainedModel):
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a [`ConditionalDetrDecoderLayer`].
The decoder updates the query embeddings through multiple self-attention and cross-attention layers.
Some small tweaks for Conditional DETR:
- object_queries and query_position_embeddings are added to the forward pass.
- if self.config.auxiliary_loss is set to True, also returns a stack of activations from all decoding layers.
Args:
config: ConditionalDetrConfig
"""
def __init__(self, config: ConditionalDetrConfig):
super().__init__(config)
self.dropout = config.dropout
self.layerdrop = config.decoder_layerdrop
self.layers = nn.ModuleList([ConditionalDetrDecoderLayer(config) for _ in range(config.decoder_layers)])
# in Conditional DETR, the decoder uses layernorm after the last decoder layer output
self.layernorm = nn.LayerNorm(config.d_model)
d_model = config.d_model
self.gradient_checkpointing = False
# query_scale is the FFN applied on f to generate transformation T
self.query_scale = MLP(d_model, d_model, d_model, 2)
self.ref_point_head = MLP(d_model, d_model, 2, 2)
for layer_id in range(config.decoder_layers - 1):
self.layers[layer_id + 1].ca_qpos_proj = None
# Initialize weights and apply final processing
self.post_init()
def forward(
self,
inputs_embeds=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
object_queries=None,
query_position_embeddings=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
**kwargs,
):
r"""
Args:
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
The query embeddings that are passed into the decoder.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on certain queries. Mask values selected in `[0, 1]`:
- 1 for queries that are **not masked**,
- 0 for queries that are **masked**.
[What are attention masks?](../glossary#attention-mask)
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, encoder_sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (`torch.LongTensor` of shape `(batch_size, encoder_sequence_length)`, *optional*):
Mask to avoid performing cross-attention on padding pixel_values of the encoder. Mask values selected
in `[0, 1]`:
- 1 for pixels that are real (i.e. **not masked**),
- 0 for pixels that are padding (i.e. **masked**).
object_queries (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Position embeddings that are added to the queries and keys in each cross-attention layer.
query_position_embeddings (`torch.FloatTensor` of shape `(batch_size, num_queries, hidden_size)`):
, *optional*): Position embeddings that are added to the queries and keys in each self-attention layer.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
position_embeddings = kwargs.pop("position_embeddings", None)
if kwargs:
raise ValueError(f"Unexpected arguments {kwargs.keys()}")
if position_embeddings is not None and object_queries is not None:
raise ValueError(
"Cannot specify both position_embeddings and object_queries. Please use just object_queries"
)
if position_embeddings is not None:
logger.warning_once(
"position_embeddings has been deprecated and will be removed in v4.34. Please use object_queries instead"
)
object_queries = position_embeddings
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if inputs_embeds is not None:
hidden_states = inputs_embeds
input_shape = inputs_embeds.size()[:-1]
# expand encoder attention mask
if encoder_hidden_states is not None and encoder_attention_mask is not None:
# [batch_size, seq_len] -> [batch_size, 1, target_seq_len, source_seq_len]
encoder_attention_mask = _prepare_4d_attention_mask(
encoder_attention_mask, inputs_embeds.dtype, tgt_len=input_shape[-1]
)
# optional intermediate hidden states
intermediate = () if self.config.auxiliary_loss else None
# decoder layers
all_hidden_states = () if output_hidden_states else None
all_self_attns = () if output_attentions else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
reference_points_before_sigmoid = self.ref_point_head(
query_position_embeddings
) # [num_queries, batch_size, 2]
reference_points = reference_points_before_sigmoid.sigmoid().transpose(0, 1)
obj_center = reference_points[..., :2].transpose(0, 1)
# get sine embedding for the query vector
query_sine_embed_before_transformation = gen_sine_position_embeddings(obj_center, self.config.d_model)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if output_hidden_states:
all_hidden_states += (hidden_states,)
if self.training:
dropout_probability = torch.rand([])
if dropout_probability < self.layerdrop:
continue
if idx == 0:
pos_transformation = 1
else:
pos_transformation = self.query_scale(hidden_states)
# apply transformation
query_sine_embed = query_sine_embed_before_transformation * pos_transformation
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
decoder_layer.__call__,
hidden_states,
None,
object_queries,
query_position_embeddings,
query_sine_embed,
encoder_hidden_states,
encoder_attention_mask,
None,
None,
)
else:
layer_outputs = decoder_layer(
hidden_states,
attention_mask=None,
object_queries=object_queries,
query_position_embeddings=query_position_embeddings,
query_sine_embed=query_sine_embed,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
is_first=(idx == 0),
)
hidden_states = layer_outputs[0]
if self.config.auxiliary_loss:
hidden_states = self.layernorm(hidden_states)
intermediate += (hidden_states,)
if output_attentions:
all_self_attns += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
# finally, apply layernorm
hidden_states = self.layernorm(hidden_states)
# add hidden states from the last decoder layer
if output_hidden_states:
all_hidden_states += (hidden_states,)
# stack intermediate decoder activations
if self.config.auxiliary_loss:
intermediate = torch.stack(intermediate)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
all_hidden_states,
all_self_attns,
all_cross_attentions,
intermediate,
reference_points,
]
if v is not None
)
return ConditionalDetrDecoderOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attns,
cross_attentions=all_cross_attentions,
intermediate_hidden_states=intermediate,
reference_points=reference_points,
)
@add_start_docstrings(
"""
The bare Conditional DETR Model (consisting of a backbone and encoder-decoder Transformer) outputting raw
hidden-states without any specific head on top.
""",
CONDITIONAL_DETR_START_DOCSTRING,
)
class ConditionalDetrModel(ConditionalDetrPreTrainedModel):
def __init__(self, config: ConditionalDetrConfig):
super().__init__(config)
# Create backbone + positional encoding
backbone = ConditionalDetrConvEncoder(config)
object_queries = build_position_encoding(config)
self.backbone = ConditionalDetrConvModel(backbone, object_queries)
# Create projection layer
self.input_projection = nn.Conv2d(backbone.intermediate_channel_sizes[-1], config.d_model, kernel_size=1)
self.query_position_embeddings = nn.Embedding(config.num_queries, config.d_model)
self.encoder = ConditionalDetrEncoder(config)
self.decoder = ConditionalDetrDecoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_encoder(self):
return self.encoder
def get_decoder(self):
return self.decoder
def freeze_backbone(self):
for name, param in self.backbone.conv_encoder.model.named_parameters():
param.requires_grad_(False)
def unfreeze_backbone(self):
for name, param in self.backbone.conv_encoder.model.named_parameters():
param.requires_grad_(True)
@add_start_docstrings_to_model_forward(CONDITIONAL_DETR_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ConditionalDetrModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.FloatTensor,
pixel_mask: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
encoder_outputs: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], ConditionalDetrModelOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, AutoModel
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("microsoft/conditional-detr-resnet-50")
>>> model = AutoModel.from_pretrained("microsoft/conditional-detr-resnet-50")
>>> # prepare image for the model
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> # forward pass
>>> outputs = model(**inputs)
>>> # the last hidden states are the final query embeddings of the Transformer decoder
>>> # these are of shape (batch_size, num_queries, hidden_size)
>>> last_hidden_states = outputs.last_hidden_state
>>> list(last_hidden_states.shape)
[1, 300, 256]
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
batch_size, num_channels, height, width = pixel_values.shape
device = pixel_values.device
if pixel_mask is None:
pixel_mask = torch.ones(((batch_size, height, width)), device=device)
# First, sent pixel_values + pixel_mask through Backbone to obtain the features
# pixel_values should be of shape (batch_size, num_channels, height, width)
# pixel_mask should be of shape (batch_size, height, width)
features, object_queries_list = self.backbone(pixel_values, pixel_mask)
# get final feature map and downsampled mask
feature_map, mask = features[-1]
if mask is None:
raise ValueError("Backbone does not return downsampled pixel mask")
# Second, apply 1x1 convolution to reduce the channel dimension to d_model (256 by default)
projected_feature_map = self.input_projection(feature_map)
# Third, flatten the feature map + object_queries of shape NxCxHxW to NxCxHW, and permute it to NxHWxC
# In other words, turn their shape into (batch_size, sequence_length, hidden_size)
flattened_features = projected_feature_map.flatten(2).permute(0, 2, 1)
object_queries = object_queries_list[-1].flatten(2).permute(0, 2, 1)
flattened_mask = mask.flatten(1)
# Fourth, sent flattened_features + flattened_mask + object_queries through encoder
# flattened_features is a Tensor of shape (batch_size, heigth*width, hidden_size)
# flattened_mask is a Tensor of shape (batch_size, heigth*width)
if encoder_outputs is None:
encoder_outputs = self.encoder(
inputs_embeds=flattened_features,
attention_mask=flattened_mask,
object_queries=object_queries,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# Fifth, sent query embeddings + object_queries through the decoder (which is conditioned on the encoder output)
query_position_embeddings = self.query_position_embeddings.weight.unsqueeze(0).repeat(batch_size, 1, 1)
queries = torch.zeros_like(query_position_embeddings)
# decoder outputs consists of (dec_features, dec_hidden, dec_attn)
decoder_outputs = self.decoder(
inputs_embeds=queries,
attention_mask=None,
object_queries=object_queries,
query_position_embeddings=query_position_embeddings,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=flattened_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if not return_dict:
return decoder_outputs + encoder_outputs
return ConditionalDetrModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
intermediate_hidden_states=decoder_outputs.intermediate_hidden_states,
reference_points=decoder_outputs.reference_points,
)
@add_start_docstrings(
"""
CONDITIONAL_DETR Model (consisting of a backbone and encoder-decoder Transformer) with object detection heads on
top, for tasks such as COCO detection.
""",
CONDITIONAL_DETR_START_DOCSTRING,
)
class ConditionalDetrForObjectDetection(ConditionalDetrPreTrainedModel):
def __init__(self, config: ConditionalDetrConfig):
super().__init__(config)
# CONDITIONAL DETR encoder-decoder model
self.model = ConditionalDetrModel(config)
# Object detection heads
self.class_labels_classifier = nn.Linear(
config.d_model, config.num_labels
) # We add one for the "no object" class
self.bbox_predictor = ConditionalDetrMLPPredictionHead(
input_dim=config.d_model, hidden_dim=config.d_model, output_dim=4, num_layers=3
)
# Initialize weights and apply final processing
self.post_init()
# taken from https://github.com/Atten4Vis/conditionalDETR/blob/master/models/conditional_detr.py
@torch.jit.unused
def _set_aux_loss(self, outputs_class, outputs_coord):
# this is a workaround to make torchscript happy, as torchscript
# doesn't support dictionary with non-homogeneous values, such
# as a dict having both a Tensor and a list.
return [{"logits": a, "pred_boxes": b} for a, b in zip(outputs_class[:-1], outputs_coord[:-1])]
@add_start_docstrings_to_model_forward(CONDITIONAL_DETR_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ConditionalDetrObjectDetectionOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.FloatTensor,
pixel_mask: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
encoder_outputs: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[List[dict]] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], ConditionalDetrObjectDetectionOutput]:
r"""
labels (`List[Dict]` of len `(batch_size,)`, *optional*):
Labels for computing the bipartite matching loss. List of dicts, each dictionary containing at least the
following 2 keys: 'class_labels' and 'boxes' (the class labels and bounding boxes of an image in the batch
respectively). The class labels themselves should be a `torch.LongTensor` of len `(number of bounding boxes
in the image,)` and the boxes a `torch.FloatTensor` of shape `(number of bounding boxes in the image, 4)`.
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, AutoModelForObjectDetection
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("microsoft/conditional-detr-resnet-50")
>>> model = AutoModelForObjectDetection.from_pretrained("microsoft/conditional-detr-resnet-50")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> outputs = model(**inputs)
>>> # convert outputs (bounding boxes and class logits) to Pascal VOC format (xmin, ymin, xmax, ymax)
>>> target_sizes = torch.tensor([image.size[::-1]])
>>> results = image_processor.post_process_object_detection(outputs, threshold=0.5, target_sizes=target_sizes)[
... 0
... ]
>>> for score, label, box in zip(results["scores"], results["labels"], results["boxes"]):
... box = [round(i, 2) for i in box.tolist()]
... print(
... f"Detected {model.config.id2label[label.item()]} with confidence "
... f"{round(score.item(), 3)} at location {box}"
... )
Detected remote with confidence 0.833 at location [38.31, 72.1, 177.63, 118.45]
Detected cat with confidence 0.831 at location [9.2, 51.38, 321.13, 469.0]
Detected cat with confidence 0.804 at location [340.3, 16.85, 642.93, 370.95]
Detected remote with confidence 0.683 at location [334.48, 73.49, 366.37, 190.01]
Detected couch with confidence 0.535 at location [0.52, 1.19, 640.35, 475.1]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# First, sent images through CONDITIONAL_DETR base model to obtain encoder + decoder outputs
outputs = self.model(
pixel_values,
pixel_mask=pixel_mask,
decoder_attention_mask=decoder_attention_mask,
encoder_outputs=encoder_outputs,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
# class logits + predicted bounding boxes
logits = self.class_labels_classifier(sequence_output)
reference = outputs.reference_points if return_dict else outputs[-1]
reference_before_sigmoid = inverse_sigmoid(reference).transpose(0, 1)
outputs_coords = []
hs = sequence_output
tmp = self.bbox_predictor(hs)
tmp[..., :2] += reference_before_sigmoid
pred_boxes = tmp.sigmoid()
# pred_boxes = self.bbox_predictor(sequence_output).sigmoid()
loss, loss_dict, auxiliary_outputs = None, None, None
if labels is not None:
# First: create the matcher
matcher = ConditionalDetrHungarianMatcher(
class_cost=self.config.class_cost, bbox_cost=self.config.bbox_cost, giou_cost=self.config.giou_cost
)
# Second: create the criterion
losses = ["labels", "boxes", "cardinality"]
criterion = ConditionalDetrLoss(
matcher=matcher,
num_classes=self.config.num_labels,
focal_alpha=self.config.focal_alpha,
losses=losses,
)
criterion.to(self.device)
# Third: compute the losses, based on outputs and labels
outputs_loss = {}
outputs_loss["logits"] = logits
outputs_loss["pred_boxes"] = pred_boxes
if self.config.auxiliary_loss:
intermediate = outputs.intermediate_hidden_states if return_dict else outputs[4]
outputs_class = self.class_labels_classifier(intermediate)
for lvl in range(intermediate.shape[0]):
tmp = self.bbox_predictor(intermediate[lvl])
tmp[..., :2] += reference_before_sigmoid
outputs_coord = tmp.sigmoid()
outputs_coords.append(outputs_coord)
outputs_coord = torch.stack(outputs_coords)
auxiliary_outputs = self._set_aux_loss(outputs_class, outputs_coord)
outputs_loss["auxiliary_outputs"] = auxiliary_outputs
loss_dict = criterion(outputs_loss, labels)
# Fourth: compute total loss, as a weighted sum of the various losses
weight_dict = {"loss_ce": self.config.cls_loss_coefficient, "loss_bbox": self.config.bbox_loss_coefficient}
weight_dict["loss_giou"] = self.config.giou_loss_coefficient
if self.config.auxiliary_loss:
aux_weight_dict = {}
for i in range(self.config.decoder_layers - 1):
aux_weight_dict.update({k + f"_{i}": v for k, v in weight_dict.items()})
weight_dict.update(aux_weight_dict)
loss = sum(loss_dict[k] * weight_dict[k] for k in loss_dict.keys() if k in weight_dict)
if not return_dict:
if auxiliary_outputs is not None:
output = (logits, pred_boxes) + auxiliary_outputs + outputs
else:
output = (logits, pred_boxes) + outputs
return ((loss, loss_dict) + output) if loss is not None else output
return ConditionalDetrObjectDetectionOutput(
loss=loss,
loss_dict=loss_dict,
logits=logits,
pred_boxes=pred_boxes,
auxiliary_outputs=auxiliary_outputs,
last_hidden_state=outputs.last_hidden_state,
decoder_hidden_states=outputs.decoder_hidden_states,
decoder_attentions=outputs.decoder_attentions,
cross_attentions=outputs.cross_attentions,
encoder_last_hidden_state=outputs.encoder_last_hidden_state,
encoder_hidden_states=outputs.encoder_hidden_states,
encoder_attentions=outputs.encoder_attentions,
)
@add_start_docstrings(
"""
CONDITIONAL_DETR Model (consisting of a backbone and encoder-decoder Transformer) with a segmentation head on top,
for tasks such as COCO panoptic.
""",
CONDITIONAL_DETR_START_DOCSTRING,
)
class ConditionalDetrForSegmentation(ConditionalDetrPreTrainedModel):
def __init__(self, config: ConditionalDetrConfig):
super().__init__(config)
# object detection model
self.conditional_detr = ConditionalDetrForObjectDetection(config)
# segmentation head
hidden_size, number_of_heads = config.d_model, config.encoder_attention_heads
intermediate_channel_sizes = self.conditional_detr.model.backbone.conv_encoder.intermediate_channel_sizes
self.mask_head = ConditionalDetrMaskHeadSmallConv(
hidden_size + number_of_heads, intermediate_channel_sizes[::-1][-3:], hidden_size
)
self.bbox_attention = ConditionalDetrMHAttentionMap(
hidden_size, hidden_size, number_of_heads, dropout=0.0, std=config.init_xavier_std
)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(CONDITIONAL_DETR_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ConditionalDetrSegmentationOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.FloatTensor,
pixel_mask: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.FloatTensor] = None,
encoder_outputs: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
decoder_inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[List[dict]] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.FloatTensor], ConditionalDetrSegmentationOutput]:
r"""
labels (`List[Dict]` of len `(batch_size,)`, *optional*):
Labels for computing the bipartite matching loss, DICE/F-1 loss and Focal loss. List of dicts, each
dictionary containing at least the following 3 keys: 'class_labels', 'boxes' and 'masks' (the class labels,
bounding boxes and segmentation masks of an image in the batch respectively). The class labels themselves
should be a `torch.LongTensor` of len `(number of bounding boxes in the image,)`, the boxes a
`torch.FloatTensor` of shape `(number of bounding boxes in the image, 4)` and the masks a
`torch.FloatTensor` of shape `(number of bounding boxes in the image, height, width)`.
Returns:
Examples:
```python
>>> import io
>>> import requests
>>> from PIL import Image
>>> import torch
>>> import numpy
>>> from transformers import (
... AutoImageProcessor,
... ConditionalDetrConfig,
... ConditionalDetrForSegmentation,
... )
>>> from transformers.image_transforms import rgb_to_id
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("microsoft/conditional-detr-resnet-50")
>>> # randomly initialize all weights of the model
>>> config = ConditionalDetrConfig()
>>> model = ConditionalDetrForSegmentation(config)
>>> # prepare image for the model
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> # forward pass
>>> outputs = model(**inputs)
>>> # Use the `post_process_panoptic_segmentation` method of the `image_processor` to retrieve post-processed panoptic segmentation maps
>>> # Segmentation results are returned as a list of dictionaries
>>> result = image_processor.post_process_panoptic_segmentation(outputs, target_sizes=[(300, 500)])
>>> # A tensor of shape (height, width) where each value denotes a segment id, filled with -1 if no segment is found
>>> panoptic_seg = result[0]["segmentation"]
>>> # Get prediction score and segment_id to class_id mapping of each segment
>>> panoptic_segments_info = result[0]["segments_info"]
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
batch_size, num_channels, height, width = pixel_values.shape
device = pixel_values.device
if pixel_mask is None:
pixel_mask = torch.ones((batch_size, height, width), device=device)
# First, get list of feature maps and object_queries
features, object_queries_list = self.conditional_detr.model.backbone(pixel_values, pixel_mask=pixel_mask)
# Second, apply 1x1 convolution to reduce the channel dimension to d_model (256 by default)
feature_map, mask = features[-1]
batch_size, num_channels, height, width = feature_map.shape
projected_feature_map = self.conditional_detr.model.input_projection(feature_map)
# Third, flatten the feature map + object_queries of shape NxCxHxW to NxCxHW, and permute it to NxHWxC
# In other words, turn their shape into (batch_size, sequence_length, hidden_size)
flattened_features = projected_feature_map.flatten(2).permute(0, 2, 1)
object_queries = object_queries_list[-1].flatten(2).permute(0, 2, 1)
flattened_mask = mask.flatten(1)
# Fourth, sent flattened_features + flattened_mask + object_queries through encoder
# flattened_features is a Tensor of shape (batch_size, heigth*width, hidden_size)
# flattened_mask is a Tensor of shape (batch_size, heigth*width)
if encoder_outputs is None:
encoder_outputs = self.conditional_detr.model.encoder(
inputs_embeds=flattened_features,
attention_mask=flattened_mask,
object_queries=object_queries,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# If the user passed a tuple for encoder_outputs, we wrap it in a BaseModelOutput when return_dict=True
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1] if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2] if len(encoder_outputs) > 2 else None,
)
# Fifth, sent query embeddings + object_queries through the decoder (which is conditioned on the encoder output)
query_position_embeddings = self.conditional_detr.model.query_position_embeddings.weight.unsqueeze(0).repeat(
batch_size, 1, 1
)
queries = torch.zeros_like(query_position_embeddings)
# decoder outputs consists of (dec_features, dec_hidden, dec_attn)
decoder_outputs = self.conditional_detr.model.decoder(
inputs_embeds=queries,
attention_mask=None,
object_queries=object_queries,
query_position_embeddings=query_position_embeddings,
encoder_hidden_states=encoder_outputs[0],
encoder_attention_mask=flattened_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = decoder_outputs[0]
# Sixth, compute logits, pred_boxes and pred_masks
logits = self.conditional_detr.class_labels_classifier(sequence_output)
pred_boxes = self.conditional_detr.bbox_predictor(sequence_output).sigmoid()
memory = encoder_outputs[0].permute(0, 2, 1).view(batch_size, self.config.d_model, height, width)
mask = flattened_mask.view(batch_size, height, width)
# FIXME h_boxes takes the last one computed, keep this in mind
# important: we need to reverse the mask, since in the original implementation the mask works reversed
# bbox_mask is of shape (batch_size, num_queries, number_of_attention_heads in bbox_attention, height/32, width/32)
bbox_mask = self.bbox_attention(sequence_output, memory, mask=~mask)
seg_masks = self.mask_head(projected_feature_map, bbox_mask, [features[2][0], features[1][0], features[0][0]])
pred_masks = seg_masks.view(
batch_size, self.conditional_detr.config.num_queries, seg_masks.shape[-2], seg_masks.shape[-1]
)
loss, loss_dict, auxiliary_outputs = None, None, None
if labels is not None:
# First: create the matcher
matcher = ConditionalDetrHungarianMatcher(
class_cost=self.config.class_cost, bbox_cost=self.config.bbox_cost, giou_cost=self.config.giou_cost
)
# Second: create the criterion
losses = ["labels", "boxes", "cardinality", "masks"]
criterion = ConditionalDetrLoss(
matcher=matcher,
num_classes=self.config.num_labels,
focal_alpha=self.config.focal_alpha,
losses=losses,
)
criterion.to(self.device)
# Third: compute the losses, based on outputs and labels
outputs_loss = {}
outputs_loss["logits"] = logits
outputs_loss["pred_boxes"] = pred_boxes
outputs_loss["pred_masks"] = pred_masks
if self.config.auxiliary_loss:
intermediate = decoder_outputs.intermediate_hidden_states if return_dict else decoder_outputs[-1]
outputs_class = self.conditional_detr.class_labels_classifier(intermediate)
outputs_coord = self.conditional_detr.bbox_predictor(intermediate).sigmoid()
auxiliary_outputs = self.conditional_detr._set_aux_loss(outputs_class, outputs_coord)
outputs_loss["auxiliary_outputs"] = auxiliary_outputs
loss_dict = criterion(outputs_loss, labels)
# Fourth: compute total loss, as a weighted sum of the various losses
weight_dict = {"loss_ce": 1, "loss_bbox": self.config.bbox_loss_coefficient}
weight_dict["loss_giou"] = self.config.giou_loss_coefficient
weight_dict["loss_mask"] = self.config.mask_loss_coefficient
weight_dict["loss_dice"] = self.config.dice_loss_coefficient
if self.config.auxiliary_loss:
aux_weight_dict = {}
for i in range(self.config.decoder_layers - 1):
aux_weight_dict.update({k + f"_{i}": v for k, v in weight_dict.items()})
weight_dict.update(aux_weight_dict)
loss = sum(loss_dict[k] * weight_dict[k] for k in loss_dict.keys() if k in weight_dict)
if not return_dict:
if auxiliary_outputs is not None:
output = (logits, pred_boxes, pred_masks) + auxiliary_outputs + decoder_outputs + encoder_outputs
else:
output = (logits, pred_boxes, pred_masks) + decoder_outputs + encoder_outputs
return ((loss, loss_dict) + output) if loss is not None else output
return ConditionalDetrSegmentationOutput(
loss=loss,
loss_dict=loss_dict,
logits=logits,
pred_boxes=pred_boxes,
pred_masks=pred_masks,
auxiliary_outputs=auxiliary_outputs,
last_hidden_state=decoder_outputs.last_hidden_state,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
)
def _expand(tensor, length: int):
return tensor.unsqueeze(1).repeat(1, int(length), 1, 1, 1).flatten(0, 1)
# Copied from transformers.models.detr.modeling_detr.DetrMaskHeadSmallConv with Detr->ConditionalDetr
class ConditionalDetrMaskHeadSmallConv(nn.Module):
"""
Simple convolutional head, using group norm. Upsampling is done using a FPN approach
"""
def __init__(self, dim, fpn_dims, context_dim):
super().__init__()
if dim % 8 != 0:
raise ValueError(
"The hidden_size + number of attention heads must be divisible by 8 as the number of groups in"
" GroupNorm is set to 8"
)
inter_dims = [dim, context_dim // 2, context_dim // 4, context_dim // 8, context_dim // 16, context_dim // 64]
self.lay1 = nn.Conv2d(dim, dim, 3, padding=1)
self.gn1 = nn.GroupNorm(8, dim)
self.lay2 = nn.Conv2d(dim, inter_dims[1], 3, padding=1)
self.gn2 = nn.GroupNorm(min(8, inter_dims[1]), inter_dims[1])
self.lay3 = nn.Conv2d(inter_dims[1], inter_dims[2], 3, padding=1)
self.gn3 = nn.GroupNorm(min(8, inter_dims[2]), inter_dims[2])
self.lay4 = nn.Conv2d(inter_dims[2], inter_dims[3], 3, padding=1)
self.gn4 = nn.GroupNorm(min(8, inter_dims[3]), inter_dims[3])
self.lay5 = nn.Conv2d(inter_dims[3], inter_dims[4], 3, padding=1)
self.gn5 = nn.GroupNorm(min(8, inter_dims[4]), inter_dims[4])
self.out_lay = nn.Conv2d(inter_dims[4], 1, 3, padding=1)
self.dim = dim
self.adapter1 = nn.Conv2d(fpn_dims[0], inter_dims[1], 1)
self.adapter2 = nn.Conv2d(fpn_dims[1], inter_dims[2], 1)
self.adapter3 = nn.Conv2d(fpn_dims[2], inter_dims[3], 1)
for m in self.modules():
if isinstance(m, nn.Conv2d):
nn.init.kaiming_uniform_(m.weight, a=1)
nn.init.constant_(m.bias, 0)
def forward(self, x: Tensor, bbox_mask: Tensor, fpns: List[Tensor]):
# here we concatenate x, the projected feature map, of shape (batch_size, d_model, heigth/32, width/32) with
# the bbox_mask = the attention maps of shape (batch_size, n_queries, n_heads, height/32, width/32).
# We expand the projected feature map to match the number of heads.
x = torch.cat([_expand(x, bbox_mask.shape[1]), bbox_mask.flatten(0, 1)], 1)
x = self.lay1(x)
x = self.gn1(x)
x = nn.functional.relu(x)
x = self.lay2(x)
x = self.gn2(x)
x = nn.functional.relu(x)
cur_fpn = self.adapter1(fpns[0])
if cur_fpn.size(0) != x.size(0):
cur_fpn = _expand(cur_fpn, x.size(0) // cur_fpn.size(0))
x = cur_fpn + nn.functional.interpolate(x, size=cur_fpn.shape[-2:], mode="nearest")
x = self.lay3(x)
x = self.gn3(x)
x = nn.functional.relu(x)
cur_fpn = self.adapter2(fpns[1])
if cur_fpn.size(0) != x.size(0):
cur_fpn = _expand(cur_fpn, x.size(0) // cur_fpn.size(0))
x = cur_fpn + nn.functional.interpolate(x, size=cur_fpn.shape[-2:], mode="nearest")
x = self.lay4(x)
x = self.gn4(x)
x = nn.functional.relu(x)
cur_fpn = self.adapter3(fpns[2])
if cur_fpn.size(0) != x.size(0):
cur_fpn = _expand(cur_fpn, x.size(0) // cur_fpn.size(0))
x = cur_fpn + nn.functional.interpolate(x, size=cur_fpn.shape[-2:], mode="nearest")
x = self.lay5(x)
x = self.gn5(x)
x = nn.functional.relu(x)
x = self.out_lay(x)
return x
# Copied from transformers.models.detr.modeling_detr.DetrMHAttentionMap with Detr->ConditionalDetr
class ConditionalDetrMHAttentionMap(nn.Module):
"""This is a 2D attention module, which only returns the attention softmax (no multiplication by value)"""
def __init__(self, query_dim, hidden_dim, num_heads, dropout=0.0, bias=True, std=None):
super().__init__()
self.num_heads = num_heads
self.hidden_dim = hidden_dim
self.dropout = nn.Dropout(dropout)
self.q_linear = nn.Linear(query_dim, hidden_dim, bias=bias)
self.k_linear = nn.Linear(query_dim, hidden_dim, bias=bias)
self.normalize_fact = float(hidden_dim / self.num_heads) ** -0.5
def forward(self, q, k, mask: Optional[Tensor] = None):
q = self.q_linear(q)
k = nn.functional.conv2d(k, self.k_linear.weight.unsqueeze(-1).unsqueeze(-1), self.k_linear.bias)
queries_per_head = q.view(q.shape[0], q.shape[1], self.num_heads, self.hidden_dim // self.num_heads)
keys_per_head = k.view(k.shape[0], self.num_heads, self.hidden_dim // self.num_heads, k.shape[-2], k.shape[-1])
weights = torch.einsum("bqnc,bnchw->bqnhw", queries_per_head * self.normalize_fact, keys_per_head)
if mask is not None:
weights.masked_fill_(mask.unsqueeze(1).unsqueeze(1), torch.finfo(weights.dtype).min)
weights = nn.functional.softmax(weights.flatten(2), dim=-1).view(weights.size())
weights = self.dropout(weights)
return weights
# Copied from transformers.models.detr.modeling_detr.dice_loss
def dice_loss(inputs, targets, num_boxes):
"""
Compute the DICE loss, similar to generalized IOU for masks
Args:
inputs: A float tensor of arbitrary shape.
The predictions for each example.
targets: A float tensor with the same shape as inputs. Stores the binary
classification label for each element in inputs (0 for the negative class and 1 for the positive
class).
"""
inputs = inputs.sigmoid()
inputs = inputs.flatten(1)
numerator = 2 * (inputs * targets).sum(1)
denominator = inputs.sum(-1) + targets.sum(-1)
loss = 1 - (numerator + 1) / (denominator + 1)
return loss.sum() / num_boxes
# Copied from transformers.models.detr.modeling_detr.sigmoid_focal_loss
def sigmoid_focal_loss(inputs, targets, num_boxes, alpha: float = 0.25, gamma: float = 2):
"""
Loss used in RetinaNet for dense detection: https://arxiv.org/abs/1708.02002.
Args:
inputs (`torch.FloatTensor` of arbitrary shape):
The predictions for each example.
targets (`torch.FloatTensor` with the same shape as `inputs`)
A tensor storing the binary classification label for each element in the `inputs` (0 for the negative class
and 1 for the positive class).
alpha (`float`, *optional*, defaults to `0.25`):
Optional weighting factor in the range (0,1) to balance positive vs. negative examples.
gamma (`int`, *optional*, defaults to `2`):
Exponent of the modulating factor (1 - p_t) to balance easy vs hard examples.
Returns:
Loss tensor
"""
prob = inputs.sigmoid()
ce_loss = nn.functional.binary_cross_entropy_with_logits(inputs, targets, reduction="none")
# add modulating factor
p_t = prob * targets + (1 - prob) * (1 - targets)
loss = ce_loss * ((1 - p_t) ** gamma)
if alpha >= 0:
alpha_t = alpha * targets + (1 - alpha) * (1 - targets)
loss = alpha_t * loss
return loss.mean(1).sum() / num_boxes
class ConditionalDetrLoss(nn.Module):
"""
This class computes the losses for ConditionalDetrForObjectDetection/ConditionalDetrForSegmentation. The process
happens in two steps: 1) we compute hungarian assignment between ground truth boxes and the outputs of the model 2)
we supervise each pair of matched ground-truth / prediction (supervise class and box).
Args:
matcher (`ConditionalDetrHungarianMatcher`):
Module able to compute a matching between targets and proposals.
num_classes (`int`):
Number of object categories, omitting the special no-object category.
focal_alpha (`float`):
Alpha parameter in focal loss.
losses (`List[str]`):
List of all the losses to be applied. See `get_loss` for a list of all available losses.
"""
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss.__init__
def __init__(self, matcher, num_classes, focal_alpha, losses):
super().__init__()
self.matcher = matcher
self.num_classes = num_classes
self.focal_alpha = focal_alpha
self.losses = losses
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss.loss_labels
def loss_labels(self, outputs, targets, indices, num_boxes):
"""
Classification loss (Binary focal loss) targets dicts must contain the key "class_labels" containing a tensor
of dim [nb_target_boxes]
"""
if "logits" not in outputs:
raise KeyError("No logits were found in the outputs")
source_logits = outputs["logits"]
idx = self._get_source_permutation_idx(indices)
target_classes_o = torch.cat([t["class_labels"][J] for t, (_, J) in zip(targets, indices)])
target_classes = torch.full(
source_logits.shape[:2], self.num_classes, dtype=torch.int64, device=source_logits.device
)
target_classes[idx] = target_classes_o
target_classes_onehot = torch.zeros(
[source_logits.shape[0], source_logits.shape[1], source_logits.shape[2] + 1],
dtype=source_logits.dtype,
layout=source_logits.layout,
device=source_logits.device,
)
target_classes_onehot.scatter_(2, target_classes.unsqueeze(-1), 1)
target_classes_onehot = target_classes_onehot[:, :, :-1]
loss_ce = (
sigmoid_focal_loss(source_logits, target_classes_onehot, num_boxes, alpha=self.focal_alpha, gamma=2)
* source_logits.shape[1]
)
losses = {"loss_ce": loss_ce}
return losses
@torch.no_grad()
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss.loss_cardinality
def loss_cardinality(self, outputs, targets, indices, num_boxes):
"""
Compute the cardinality error, i.e. the absolute error in the number of predicted non-empty boxes.
This is not really a loss, it is intended for logging purposes only. It doesn't propagate gradients.
"""
logits = outputs["logits"]
device = logits.device
target_lengths = torch.as_tensor([len(v["class_labels"]) for v in targets], device=device)
# Count the number of predictions that are NOT "no-object" (which is the last class)
card_pred = (logits.argmax(-1) != logits.shape[-1] - 1).sum(1)
card_err = nn.functional.l1_loss(card_pred.float(), target_lengths.float())
losses = {"cardinality_error": card_err}
return losses
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss.loss_boxes
def loss_boxes(self, outputs, targets, indices, num_boxes):
"""
Compute the losses related to the bounding boxes, the L1 regression loss and the GIoU loss.
Targets dicts must contain the key "boxes" containing a tensor of dim [nb_target_boxes, 4]. The target boxes
are expected in format (center_x, center_y, w, h), normalized by the image size.
"""
if "pred_boxes" not in outputs:
raise KeyError("No predicted boxes found in outputs")
idx = self._get_source_permutation_idx(indices)
source_boxes = outputs["pred_boxes"][idx]
target_boxes = torch.cat([t["boxes"][i] for t, (_, i) in zip(targets, indices)], dim=0)
loss_bbox = nn.functional.l1_loss(source_boxes, target_boxes, reduction="none")
losses = {}
losses["loss_bbox"] = loss_bbox.sum() / num_boxes
loss_giou = 1 - torch.diag(
generalized_box_iou(center_to_corners_format(source_boxes), center_to_corners_format(target_boxes))
)
losses["loss_giou"] = loss_giou.sum() / num_boxes
return losses
# Copied from transformers.models.detr.modeling_detr.DetrLoss.loss_masks
def loss_masks(self, outputs, targets, indices, num_boxes):
"""
Compute the losses related to the masks: the focal loss and the dice loss.
Targets dicts must contain the key "masks" containing a tensor of dim [nb_target_boxes, h, w].
"""
if "pred_masks" not in outputs:
raise KeyError("No predicted masks found in outputs")
source_idx = self._get_source_permutation_idx(indices)
target_idx = self._get_target_permutation_idx(indices)
source_masks = outputs["pred_masks"]
source_masks = source_masks[source_idx]
masks = [t["masks"] for t in targets]
# TODO use valid to mask invalid areas due to padding in loss
target_masks, valid = nested_tensor_from_tensor_list(masks).decompose()
target_masks = target_masks.to(source_masks)
target_masks = target_masks[target_idx]
# upsample predictions to the target size
source_masks = nn.functional.interpolate(
source_masks[:, None], size=target_masks.shape[-2:], mode="bilinear", align_corners=False
)
source_masks = source_masks[:, 0].flatten(1)
target_masks = target_masks.flatten(1)
target_masks = target_masks.view(source_masks.shape)
losses = {
"loss_mask": sigmoid_focal_loss(source_masks, target_masks, num_boxes),
"loss_dice": dice_loss(source_masks, target_masks, num_boxes),
}
return losses
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss._get_source_permutation_idx
def _get_source_permutation_idx(self, indices):
# permute predictions following indices
batch_idx = torch.cat([torch.full_like(source, i) for i, (source, _) in enumerate(indices)])
source_idx = torch.cat([source for (source, _) in indices])
return batch_idx, source_idx
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrLoss._get_target_permutation_idx
def _get_target_permutation_idx(self, indices):
# permute targets following indices
batch_idx = torch.cat([torch.full_like(target, i) for i, (_, target) in enumerate(indices)])
target_idx = torch.cat([target for (_, target) in indices])
return batch_idx, target_idx
# Copied from transformers.models.detr.modeling_detr.DetrLoss.get_loss
def get_loss(self, loss, outputs, targets, indices, num_boxes):
loss_map = {
"labels": self.loss_labels,
"cardinality": self.loss_cardinality,
"boxes": self.loss_boxes,
"masks": self.loss_masks,
}
if loss not in loss_map:
raise ValueError(f"Loss {loss} not supported")
return loss_map[loss](outputs, targets, indices, num_boxes)
# Copied from transformers.models.detr.modeling_detr.DetrLoss.forward
def forward(self, outputs, targets):
"""
This performs the loss computation.
Args:
outputs (`dict`, *optional*):
Dictionary of tensors, see the output specification of the model for the format.
targets (`List[dict]`, *optional*):
List of dicts, such that `len(targets) == batch_size`. The expected keys in each dict depends on the
losses applied, see each loss' doc.
"""
outputs_without_aux = {k: v for k, v in outputs.items() if k != "auxiliary_outputs"}
# Retrieve the matching between the outputs of the last layer and the targets
indices = self.matcher(outputs_without_aux, targets)
# Compute the average number of target boxes across all nodes, for normalization purposes
num_boxes = sum(len(t["class_labels"]) for t in targets)
num_boxes = torch.as_tensor([num_boxes], dtype=torch.float, device=next(iter(outputs.values())).device)
world_size = 1
if is_accelerate_available():
if PartialState._shared_state != {}:
num_boxes = reduce(num_boxes)
world_size = PartialState().num_processes
num_boxes = torch.clamp(num_boxes / world_size, min=1).item()
# Compute all the requested losses
losses = {}
for loss in self.losses:
losses.update(self.get_loss(loss, outputs, targets, indices, num_boxes))
# In case of auxiliary losses, we repeat this process with the output of each intermediate layer.
if "auxiliary_outputs" in outputs:
for i, auxiliary_outputs in enumerate(outputs["auxiliary_outputs"]):
indices = self.matcher(auxiliary_outputs, targets)
for loss in self.losses:
if loss == "masks":
# Intermediate masks losses are too costly to compute, we ignore them.
continue
l_dict = self.get_loss(loss, auxiliary_outputs, targets, indices, num_boxes)
l_dict = {k + f"_{i}": v for k, v in l_dict.items()}
losses.update(l_dict)
return losses
# Copied from transformers.models.detr.modeling_detr.DetrMLPPredictionHead with Detr->ConditionalDetr
class ConditionalDetrMLPPredictionHead(nn.Module):
"""
Very simple multi-layer perceptron (MLP, also called FFN), used to predict the normalized center coordinates,
height and width of a bounding box w.r.t. an image.
Copied from https://github.com/facebookresearch/detr/blob/master/models/detr.py
"""
def __init__(self, input_dim, hidden_dim, output_dim, num_layers):
super().__init__()
self.num_layers = num_layers
h = [hidden_dim] * (num_layers - 1)
self.layers = nn.ModuleList(nn.Linear(n, k) for n, k in zip([input_dim] + h, h + [output_dim]))
def forward(self, x):
for i, layer in enumerate(self.layers):
x = nn.functional.relu(layer(x)) if i < self.num_layers - 1 else layer(x)
return x
# Copied from transformers.models.deformable_detr.modeling_deformable_detr.DeformableDetrHungarianMatcher with DeformableDetr->ConditionalDetr
class ConditionalDetrHungarianMatcher(nn.Module):
"""
This class computes an assignment between the targets and the predictions of the network.
For efficiency reasons, the targets don't include the no_object. Because of this, in general, there are more
predictions than targets. In this case, we do a 1-to-1 matching of the best predictions, while the others are
un-matched (and thus treated as non-objects).
Args:
class_cost:
The relative weight of the classification error in the matching cost.
bbox_cost:
The relative weight of the L1 error of the bounding box coordinates in the matching cost.
giou_cost:
The relative weight of the giou loss of the bounding box in the matching cost.
"""
def __init__(self, class_cost: float = 1, bbox_cost: float = 1, giou_cost: float = 1):
super().__init__()
requires_backends(self, ["scipy"])
self.class_cost = class_cost
self.bbox_cost = bbox_cost
self.giou_cost = giou_cost
if class_cost == 0 and bbox_cost == 0 and giou_cost == 0:
raise ValueError("All costs of the Matcher can't be 0")
@torch.no_grad()
def forward(self, outputs, targets):
"""
Args:
outputs (`dict`):
A dictionary that contains at least these entries:
* "logits": Tensor of dim [batch_size, num_queries, num_classes] with the classification logits
* "pred_boxes": Tensor of dim [batch_size, num_queries, 4] with the predicted box coordinates.
targets (`List[dict]`):
A list of targets (len(targets) = batch_size), where each target is a dict containing:
* "class_labels": Tensor of dim [num_target_boxes] (where num_target_boxes is the number of
ground-truth
objects in the target) containing the class labels
* "boxes": Tensor of dim [num_target_boxes, 4] containing the target box coordinates.
Returns:
`List[Tuple]`: A list of size `batch_size`, containing tuples of (index_i, index_j) where:
- index_i is the indices of the selected predictions (in order)
- index_j is the indices of the corresponding selected targets (in order)
For each batch element, it holds: len(index_i) = len(index_j) = min(num_queries, num_target_boxes)
"""
batch_size, num_queries = outputs["logits"].shape[:2]
# We flatten to compute the cost matrices in a batch
out_prob = outputs["logits"].flatten(0, 1).sigmoid() # [batch_size * num_queries, num_classes]
out_bbox = outputs["pred_boxes"].flatten(0, 1) # [batch_size * num_queries, 4]
# Also concat the target labels and boxes
target_ids = torch.cat([v["class_labels"] for v in targets])
target_bbox = torch.cat([v["boxes"] for v in targets])
# Compute the classification cost.
alpha = 0.25
gamma = 2.0
neg_cost_class = (1 - alpha) * (out_prob**gamma) * (-(1 - out_prob + 1e-8).log())
pos_cost_class = alpha * ((1 - out_prob) ** gamma) * (-(out_prob + 1e-8).log())
class_cost = pos_cost_class[:, target_ids] - neg_cost_class[:, target_ids]
# Compute the L1 cost between boxes
bbox_cost = torch.cdist(out_bbox, target_bbox, p=1)
# Compute the giou cost between boxes
giou_cost = -generalized_box_iou(center_to_corners_format(out_bbox), center_to_corners_format(target_bbox))
# Final cost matrix
cost_matrix = self.bbox_cost * bbox_cost + self.class_cost * class_cost + self.giou_cost * giou_cost
cost_matrix = cost_matrix.view(batch_size, num_queries, -1).cpu()
sizes = [len(v["boxes"]) for v in targets]
indices = [linear_sum_assignment(c[i]) for i, c in enumerate(cost_matrix.split(sizes, -1))]
return [(torch.as_tensor(i, dtype=torch.int64), torch.as_tensor(j, dtype=torch.int64)) for i, j in indices]
# Copied from transformers.models.detr.modeling_detr._upcast
def _upcast(t: Tensor) -> Tensor:
# Protects from numerical overflows in multiplications by upcasting to the equivalent higher type
if t.is_floating_point():
return t if t.dtype in (torch.float32, torch.float64) else t.float()
else:
return t if t.dtype in (torch.int32, torch.int64) else t.int()
# Copied from transformers.models.detr.modeling_detr.box_area
def box_area(boxes: Tensor) -> Tensor:
"""
Computes the area of a set of bounding boxes, which are specified by its (x1, y1, x2, y2) coordinates.
Args:
boxes (`torch.FloatTensor` of shape `(number_of_boxes, 4)`):
Boxes for which the area will be computed. They are expected to be in (x1, y1, x2, y2) format with `0 <= x1
< x2` and `0 <= y1 < y2`.
Returns:
`torch.FloatTensor`: a tensor containing the area for each box.
"""
boxes = _upcast(boxes)
return (boxes[:, 2] - boxes[:, 0]) * (boxes[:, 3] - boxes[:, 1])
# Copied from transformers.models.detr.modeling_detr.box_iou
def box_iou(boxes1, boxes2):
area1 = box_area(boxes1)
area2 = box_area(boxes2)
left_top = torch.max(boxes1[:, None, :2], boxes2[:, :2]) # [N,M,2]
right_bottom = torch.min(boxes1[:, None, 2:], boxes2[:, 2:]) # [N,M,2]
width_height = (right_bottom - left_top).clamp(min=0) # [N,M,2]
inter = width_height[:, :, 0] * width_height[:, :, 1] # [N,M]
union = area1[:, None] + area2 - inter
iou = inter / union
return iou, union
# Copied from transformers.models.detr.modeling_detr.generalized_box_iou
def generalized_box_iou(boxes1, boxes2):
"""
Generalized IoU from https://giou.stanford.edu/. The boxes should be in [x0, y0, x1, y1] (corner) format.
Returns:
`torch.FloatTensor`: a [N, M] pairwise matrix, where N = len(boxes1) and M = len(boxes2)
"""
# degenerate boxes gives inf / nan results
# so do an early check
if not (boxes1[:, 2:] >= boxes1[:, :2]).all():
raise ValueError(f"boxes1 must be in [x0, y0, x1, y1] (corner) format, but got {boxes1}")
if not (boxes2[:, 2:] >= boxes2[:, :2]).all():
raise ValueError(f"boxes2 must be in [x0, y0, x1, y1] (corner) format, but got {boxes2}")
iou, union = box_iou(boxes1, boxes2)
top_left = torch.min(boxes1[:, None, :2], boxes2[:, :2])
bottom_right = torch.max(boxes1[:, None, 2:], boxes2[:, 2:])
width_height = (bottom_right - top_left).clamp(min=0) # [N,M,2]
area = width_height[:, :, 0] * width_height[:, :, 1]
return iou - (area - union) / area
# Copied from transformers.models.detr.modeling_detr._max_by_axis
def _max_by_axis(the_list):
# type: (List[List[int]]) -> List[int]
maxes = the_list[0]
for sublist in the_list[1:]:
for index, item in enumerate(sublist):
maxes[index] = max(maxes[index], item)
return maxes
# Copied from transformers.models.detr.modeling_detr.NestedTensor
class NestedTensor(object):
def __init__(self, tensors, mask: Optional[Tensor]):
self.tensors = tensors
self.mask = mask
def to(self, device):
cast_tensor = self.tensors.to(device)
mask = self.mask
if mask is not None:
cast_mask = mask.to(device)
else:
cast_mask = None
return NestedTensor(cast_tensor, cast_mask)
def decompose(self):
return self.tensors, self.mask
def __repr__(self):
return str(self.tensors)
# Copied from transformers.models.detr.modeling_detr.nested_tensor_from_tensor_list
def nested_tensor_from_tensor_list(tensor_list: List[Tensor]):
if tensor_list[0].ndim == 3:
max_size = _max_by_axis([list(img.shape) for img in tensor_list])
batch_shape = [len(tensor_list)] + max_size
batch_size, num_channels, height, width = batch_shape
dtype = tensor_list[0].dtype
device = tensor_list[0].device
tensor = torch.zeros(batch_shape, dtype=dtype, device=device)
mask = torch.ones((batch_size, height, width), dtype=torch.bool, device=device)
for img, pad_img, m in zip(tensor_list, tensor, mask):
pad_img[: img.shape[0], : img.shape[1], : img.shape[2]].copy_(img)
m[: img.shape[1], : img.shape[2]] = False
else:
raise ValueError("Only 3-dimensional tensors are supported")
return NestedTensor(tensor, mask)
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mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/conditional_detr/image_processing_conditional_detr.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for Conditional DETR."""
import io
import pathlib
from collections import defaultdict
from typing import Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
import numpy as np
from ...feature_extraction_utils import BatchFeature
from ...image_processing_utils import BaseImageProcessor, get_size_dict
from ...image_transforms import (
PaddingMode,
center_to_corners_format,
corners_to_center_format,
id_to_rgb,
pad,
rescale,
resize,
rgb_to_id,
to_channel_dimension_format,
)
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
AnnotationFormat,
AnnotationType,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
validate_annotations,
validate_kwargs,
validate_preprocess_arguments,
)
from ...utils import (
TensorType,
is_flax_available,
is_jax_tensor,
is_scipy_available,
is_tf_available,
is_tf_tensor,
is_torch_available,
is_torch_tensor,
is_vision_available,
logging,
)
if is_torch_available():
import torch
from torch import nn
if is_vision_available():
import PIL
if is_scipy_available():
import scipy.special
import scipy.stats
logger = logging.get_logger(__name__) # pylint: disable=invalid-name
SUPPORTED_ANNOTATION_FORMATS = (AnnotationFormat.COCO_DETECTION, AnnotationFormat.COCO_PANOPTIC)
# Copied from transformers.models.detr.image_processing_detr.get_size_with_aspect_ratio
def get_size_with_aspect_ratio(image_size, size, max_size=None) -> Tuple[int, int]:
"""
Computes the output image size given the input image size and the desired output size.
Args:
image_size (`Tuple[int, int]`):
The input image size.
size (`int`):
The desired output size.
max_size (`int`, *optional*):
The maximum allowed output size.
"""
height, width = image_size
if max_size is not None:
min_original_size = float(min((height, width)))
max_original_size = float(max((height, width)))
if max_original_size / min_original_size * size > max_size:
size = int(round(max_size * min_original_size / max_original_size))
if (height <= width and height == size) or (width <= height and width == size):
return height, width
if width < height:
ow = size
oh = int(size * height / width)
else:
oh = size
ow = int(size * width / height)
return (oh, ow)
# Copied from transformers.models.detr.image_processing_detr.get_resize_output_image_size
def get_resize_output_image_size(
input_image: np.ndarray,
size: Union[int, Tuple[int, int], List[int]],
max_size: Optional[int] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Tuple[int, int]:
"""
Computes the output image size given the input image size and the desired output size. If the desired output size
is a tuple or list, the output image size is returned as is. If the desired output size is an integer, the output
image size is computed by keeping the aspect ratio of the input image size.
Args:
input_image (`np.ndarray`):
The image to resize.
size (`int` or `Tuple[int, int]` or `List[int]`):
The desired output size.
max_size (`int`, *optional*):
The maximum allowed output size.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred from the input image.
"""
image_size = get_image_size(input_image, input_data_format)
if isinstance(size, (list, tuple)):
return size
return get_size_with_aspect_ratio(image_size, size, max_size)
# Copied from transformers.models.detr.image_processing_detr.get_numpy_to_framework_fn
def get_numpy_to_framework_fn(arr) -> Callable:
"""
Returns a function that converts a numpy array to the framework of the input array.
Args:
arr (`np.ndarray`): The array to convert.
"""
if isinstance(arr, np.ndarray):
return np.array
if is_tf_available() and is_tf_tensor(arr):
import tensorflow as tf
return tf.convert_to_tensor
if is_torch_available() and is_torch_tensor(arr):
import torch
return torch.tensor
if is_flax_available() and is_jax_tensor(arr):
import jax.numpy as jnp
return jnp.array
raise ValueError(f"Cannot convert arrays of type {type(arr)}")
# Copied from transformers.models.detr.image_processing_detr.safe_squeeze
def safe_squeeze(arr: np.ndarray, axis: Optional[int] = None) -> np.ndarray:
"""
Squeezes an array, but only if the axis specified has dim 1.
"""
if axis is None:
return arr.squeeze()
try:
return arr.squeeze(axis=axis)
except ValueError:
return arr
# Copied from transformers.models.detr.image_processing_detr.normalize_annotation
def normalize_annotation(annotation: Dict, image_size: Tuple[int, int]) -> Dict:
image_height, image_width = image_size
norm_annotation = {}
for key, value in annotation.items():
if key == "boxes":
boxes = value
boxes = corners_to_center_format(boxes)
boxes /= np.asarray([image_width, image_height, image_width, image_height], dtype=np.float32)
norm_annotation[key] = boxes
else:
norm_annotation[key] = value
return norm_annotation
# Copied from transformers.models.detr.image_processing_detr.max_across_indices
def max_across_indices(values: Iterable[Any]) -> List[Any]:
"""
Return the maximum value across all indices of an iterable of values.
"""
return [max(values_i) for values_i in zip(*values)]
# Copied from transformers.models.detr.image_processing_detr.get_max_height_width
def get_max_height_width(
images: List[np.ndarray], input_data_format: Optional[Union[str, ChannelDimension]] = None
) -> List[int]:
"""
Get the maximum height and width across all images in a batch.
"""
if input_data_format is None:
input_data_format = infer_channel_dimension_format(images[0])
if input_data_format == ChannelDimension.FIRST:
_, max_height, max_width = max_across_indices([img.shape for img in images])
elif input_data_format == ChannelDimension.LAST:
max_height, max_width, _ = max_across_indices([img.shape for img in images])
else:
raise ValueError(f"Invalid channel dimension format: {input_data_format}")
return (max_height, max_width)
# Copied from transformers.models.detr.image_processing_detr.make_pixel_mask
def make_pixel_mask(
image: np.ndarray, output_size: Tuple[int, int], input_data_format: Optional[Union[str, ChannelDimension]] = None
) -> np.ndarray:
"""
Make a pixel mask for the image, where 1 indicates a valid pixel and 0 indicates padding.
Args:
image (`np.ndarray`):
Image to make the pixel mask for.
output_size (`Tuple[int, int]`):
Output size of the mask.
"""
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
mask = np.zeros(output_size, dtype=np.int64)
mask[:input_height, :input_width] = 1
return mask
# Copied from transformers.models.detr.image_processing_detr.convert_coco_poly_to_mask
def convert_coco_poly_to_mask(segmentations, height: int, width: int) -> np.ndarray:
"""
Convert a COCO polygon annotation to a mask.
Args:
segmentations (`List[List[float]]`):
List of polygons, each polygon represented by a list of x-y coordinates.
height (`int`):
Height of the mask.
width (`int`):
Width of the mask.
"""
try:
from pycocotools import mask as coco_mask
except ImportError:
raise ImportError("Pycocotools is not installed in your environment.")
masks = []
for polygons in segmentations:
rles = coco_mask.frPyObjects(polygons, height, width)
mask = coco_mask.decode(rles)
if len(mask.shape) < 3:
mask = mask[..., None]
mask = np.asarray(mask, dtype=np.uint8)
mask = np.any(mask, axis=2)
masks.append(mask)
if masks:
masks = np.stack(masks, axis=0)
else:
masks = np.zeros((0, height, width), dtype=np.uint8)
return masks
# Copied from transformers.models.detr.image_processing_detr.prepare_coco_detection_annotation with DETR->ConditionalDetr
def prepare_coco_detection_annotation(
image,
target,
return_segmentation_masks: bool = False,
input_data_format: Optional[Union[ChannelDimension, str]] = None,
):
"""
Convert the target in COCO format into the format expected by ConditionalDetr.
"""
image_height, image_width = get_image_size(image, channel_dim=input_data_format)
image_id = target["image_id"]
image_id = np.asarray([image_id], dtype=np.int64)
# Get all COCO annotations for the given image.
annotations = target["annotations"]
annotations = [obj for obj in annotations if "iscrowd" not in obj or obj["iscrowd"] == 0]
classes = [obj["category_id"] for obj in annotations]
classes = np.asarray(classes, dtype=np.int64)
# for conversion to coco api
area = np.asarray([obj["area"] for obj in annotations], dtype=np.float32)
iscrowd = np.asarray([obj["iscrowd"] if "iscrowd" in obj else 0 for obj in annotations], dtype=np.int64)
boxes = [obj["bbox"] for obj in annotations]
# guard against no boxes via resizing
boxes = np.asarray(boxes, dtype=np.float32).reshape(-1, 4)
boxes[:, 2:] += boxes[:, :2]
boxes[:, 0::2] = boxes[:, 0::2].clip(min=0, max=image_width)
boxes[:, 1::2] = boxes[:, 1::2].clip(min=0, max=image_height)
keep = (boxes[:, 3] > boxes[:, 1]) & (boxes[:, 2] > boxes[:, 0])
new_target = {}
new_target["image_id"] = image_id
new_target["class_labels"] = classes[keep]
new_target["boxes"] = boxes[keep]
new_target["area"] = area[keep]
new_target["iscrowd"] = iscrowd[keep]
new_target["orig_size"] = np.asarray([int(image_height), int(image_width)], dtype=np.int64)
if annotations and "keypoints" in annotations[0]:
keypoints = [obj["keypoints"] for obj in annotations]
# Converting the filtered keypoints list to a numpy array
keypoints = np.asarray(keypoints, dtype=np.float32)
# Apply the keep mask here to filter the relevant annotations
keypoints = keypoints[keep]
num_keypoints = keypoints.shape[0]
keypoints = keypoints.reshape((-1, 3)) if num_keypoints else keypoints
new_target["keypoints"] = keypoints
if return_segmentation_masks:
segmentation_masks = [obj["segmentation"] for obj in annotations]
masks = convert_coco_poly_to_mask(segmentation_masks, image_height, image_width)
new_target["masks"] = masks[keep]
return new_target
# Copied from transformers.models.detr.image_processing_detr.masks_to_boxes
def masks_to_boxes(masks: np.ndarray) -> np.ndarray:
"""
Compute the bounding boxes around the provided panoptic segmentation masks.
Args:
masks: masks in format `[number_masks, height, width]` where N is the number of masks
Returns:
boxes: bounding boxes in format `[number_masks, 4]` in xyxy format
"""
if masks.size == 0:
return np.zeros((0, 4))
h, w = masks.shape[-2:]
y = np.arange(0, h, dtype=np.float32)
x = np.arange(0, w, dtype=np.float32)
# see https://github.com/pytorch/pytorch/issues/50276
y, x = np.meshgrid(y, x, indexing="ij")
x_mask = masks * np.expand_dims(x, axis=0)
x_max = x_mask.reshape(x_mask.shape[0], -1).max(-1)
x = np.ma.array(x_mask, mask=~(np.array(masks, dtype=bool)))
x_min = x.filled(fill_value=1e8)
x_min = x_min.reshape(x_min.shape[0], -1).min(-1)
y_mask = masks * np.expand_dims(y, axis=0)
y_max = y_mask.reshape(x_mask.shape[0], -1).max(-1)
y = np.ma.array(y_mask, mask=~(np.array(masks, dtype=bool)))
y_min = y.filled(fill_value=1e8)
y_min = y_min.reshape(y_min.shape[0], -1).min(-1)
return np.stack([x_min, y_min, x_max, y_max], 1)
# Copied from transformers.models.detr.image_processing_detr.prepare_coco_panoptic_annotation with DETR->ConditionalDetr
def prepare_coco_panoptic_annotation(
image: np.ndarray,
target: Dict,
masks_path: Union[str, pathlib.Path],
return_masks: bool = True,
input_data_format: Union[ChannelDimension, str] = None,
) -> Dict:
"""
Prepare a coco panoptic annotation for ConditionalDetr.
"""
image_height, image_width = get_image_size(image, channel_dim=input_data_format)
annotation_path = pathlib.Path(masks_path) / target["file_name"]
new_target = {}
new_target["image_id"] = np.asarray([target["image_id"] if "image_id" in target else target["id"]], dtype=np.int64)
new_target["size"] = np.asarray([image_height, image_width], dtype=np.int64)
new_target["orig_size"] = np.asarray([image_height, image_width], dtype=np.int64)
if "segments_info" in target:
masks = np.asarray(PIL.Image.open(annotation_path), dtype=np.uint32)
masks = rgb_to_id(masks)
ids = np.array([segment_info["id"] for segment_info in target["segments_info"]])
masks = masks == ids[:, None, None]
masks = masks.astype(np.uint8)
if return_masks:
new_target["masks"] = masks
new_target["boxes"] = masks_to_boxes(masks)
new_target["class_labels"] = np.array(
[segment_info["category_id"] for segment_info in target["segments_info"]], dtype=np.int64
)
new_target["iscrowd"] = np.asarray(
[segment_info["iscrowd"] for segment_info in target["segments_info"]], dtype=np.int64
)
new_target["area"] = np.asarray(
[segment_info["area"] for segment_info in target["segments_info"]], dtype=np.float32
)
return new_target
# Copied from transformers.models.detr.image_processing_detr.get_segmentation_image
def get_segmentation_image(
masks: np.ndarray, input_size: Tuple, target_size: Tuple, stuff_equiv_classes, deduplicate=False
):
h, w = input_size
final_h, final_w = target_size
m_id = scipy.special.softmax(masks.transpose(0, 1), -1)
if m_id.shape[-1] == 0:
# We didn't detect any mask :(
m_id = np.zeros((h, w), dtype=np.int64)
else:
m_id = m_id.argmax(-1).reshape(h, w)
if deduplicate:
# Merge the masks corresponding to the same stuff class
for equiv in stuff_equiv_classes.values():
for eq_id in equiv:
m_id[m_id == eq_id] = equiv[0]
seg_img = id_to_rgb(m_id)
seg_img = resize(seg_img, (final_w, final_h), resample=PILImageResampling.NEAREST)
return seg_img
# Copied from transformers.models.detr.image_processing_detr.get_mask_area
def get_mask_area(seg_img: np.ndarray, target_size: Tuple[int, int], n_classes: int) -> np.ndarray:
final_h, final_w = target_size
np_seg_img = seg_img.astype(np.uint8)
np_seg_img = np_seg_img.reshape(final_h, final_w, 3)
m_id = rgb_to_id(np_seg_img)
area = [(m_id == i).sum() for i in range(n_classes)]
return area
# Copied from transformers.models.detr.image_processing_detr.score_labels_from_class_probabilities
def score_labels_from_class_probabilities(logits: np.ndarray) -> Tuple[np.ndarray, np.ndarray]:
probs = scipy.special.softmax(logits, axis=-1)
labels = probs.argmax(-1, keepdims=True)
scores = np.take_along_axis(probs, labels, axis=-1)
scores, labels = scores.squeeze(-1), labels.squeeze(-1)
return scores, labels
# Copied from transformers.models.detr.image_processing_detr.post_process_panoptic_sample with DetrForSegmentation->ConditionalDetrForSegmentation
def post_process_panoptic_sample(
out_logits: np.ndarray,
masks: np.ndarray,
boxes: np.ndarray,
processed_size: Tuple[int, int],
target_size: Tuple[int, int],
is_thing_map: Dict,
threshold=0.85,
) -> Dict:
"""
Converts the output of [`ConditionalDetrForSegmentation`] into panoptic segmentation predictions for a single sample.
Args:
out_logits (`torch.Tensor`):
The logits for this sample.
masks (`torch.Tensor`):
The predicted segmentation masks for this sample.
boxes (`torch.Tensor`):
The prediced bounding boxes for this sample. The boxes are in the normalized format `(center_x, center_y,
width, height)` and values between `[0, 1]`, relative to the size the image (disregarding padding).
processed_size (`Tuple[int, int]`):
The processed size of the image `(height, width)`, as returned by the preprocessing step i.e. the size
after data augmentation but before batching.
target_size (`Tuple[int, int]`):
The target size of the image, `(height, width)` corresponding to the requested final size of the
prediction.
is_thing_map (`Dict`):
A dictionary mapping class indices to a boolean value indicating whether the class is a thing or not.
threshold (`float`, *optional*, defaults to 0.85):
The threshold used to binarize the segmentation masks.
"""
# we filter empty queries and detection below threshold
scores, labels = score_labels_from_class_probabilities(out_logits)
keep = (labels != out_logits.shape[-1] - 1) & (scores > threshold)
cur_scores = scores[keep]
cur_classes = labels[keep]
cur_boxes = center_to_corners_format(boxes[keep])
if len(cur_boxes) != len(cur_classes):
raise ValueError("Not as many boxes as there are classes")
cur_masks = masks[keep]
cur_masks = resize(cur_masks[:, None], processed_size, resample=PILImageResampling.BILINEAR)
cur_masks = safe_squeeze(cur_masks, 1)
b, h, w = cur_masks.shape
# It may be that we have several predicted masks for the same stuff class.
# In the following, we track the list of masks ids for each stuff class (they are merged later on)
cur_masks = cur_masks.reshape(b, -1)
stuff_equiv_classes = defaultdict(list)
for k, label in enumerate(cur_classes):
if not is_thing_map[label]:
stuff_equiv_classes[label].append(k)
seg_img = get_segmentation_image(cur_masks, processed_size, target_size, stuff_equiv_classes, deduplicate=True)
area = get_mask_area(cur_masks, processed_size, n_classes=len(cur_scores))
# We filter out any mask that is too small
if cur_classes.size() > 0:
# We know filter empty masks as long as we find some
filtered_small = np.array([a <= 4 for a in area], dtype=bool)
while filtered_small.any():
cur_masks = cur_masks[~filtered_small]
cur_scores = cur_scores[~filtered_small]
cur_classes = cur_classes[~filtered_small]
seg_img = get_segmentation_image(cur_masks, (h, w), target_size, stuff_equiv_classes, deduplicate=True)
area = get_mask_area(seg_img, target_size, n_classes=len(cur_scores))
filtered_small = np.array([a <= 4 for a in area], dtype=bool)
else:
cur_classes = np.ones((1, 1), dtype=np.int64)
segments_info = [
{"id": i, "isthing": is_thing_map[cat], "category_id": int(cat), "area": a}
for i, (cat, a) in enumerate(zip(cur_classes, area))
]
del cur_classes
with io.BytesIO() as out:
PIL.Image.fromarray(seg_img).save(out, format="PNG")
predictions = {"png_string": out.getvalue(), "segments_info": segments_info}
return predictions
# Copied from transformers.models.detr.image_processing_detr.resize_annotation
def resize_annotation(
annotation: Dict[str, Any],
orig_size: Tuple[int, int],
target_size: Tuple[int, int],
threshold: float = 0.5,
resample: PILImageResampling = PILImageResampling.NEAREST,
):
"""
Resizes an annotation to a target size.
Args:
annotation (`Dict[str, Any]`):
The annotation dictionary.
orig_size (`Tuple[int, int]`):
The original size of the input image.
target_size (`Tuple[int, int]`):
The target size of the image, as returned by the preprocessing `resize` step.
threshold (`float`, *optional*, defaults to 0.5):
The threshold used to binarize the segmentation masks.
resample (`PILImageResampling`, defaults to `PILImageResampling.NEAREST`):
The resampling filter to use when resizing the masks.
"""
ratios = tuple(float(s) / float(s_orig) for s, s_orig in zip(target_size, orig_size))
ratio_height, ratio_width = ratios
new_annotation = {}
new_annotation["size"] = target_size
for key, value in annotation.items():
if key == "boxes":
boxes = value
scaled_boxes = boxes * np.asarray([ratio_width, ratio_height, ratio_width, ratio_height], dtype=np.float32)
new_annotation["boxes"] = scaled_boxes
elif key == "area":
area = value
scaled_area = area * (ratio_width * ratio_height)
new_annotation["area"] = scaled_area
elif key == "masks":
masks = value[:, None]
masks = np.array([resize(mask, target_size, resample=resample) for mask in masks])
masks = masks.astype(np.float32)
masks = masks[:, 0] > threshold
new_annotation["masks"] = masks
elif key == "size":
new_annotation["size"] = target_size
else:
new_annotation[key] = value
return new_annotation
# Copied from transformers.models.detr.image_processing_detr.binary_mask_to_rle
def binary_mask_to_rle(mask):
"""
Converts given binary mask of shape `(height, width)` to the run-length encoding (RLE) format.
Args:
mask (`torch.Tensor` or `numpy.array`):
A binary mask tensor of shape `(height, width)` where 0 denotes background and 1 denotes the target
segment_id or class_id.
Returns:
`List`: Run-length encoded list of the binary mask. Refer to COCO API for more information about the RLE
format.
"""
if is_torch_tensor(mask):
mask = mask.numpy()
pixels = mask.flatten()
pixels = np.concatenate([[0], pixels, [0]])
runs = np.where(pixels[1:] != pixels[:-1])[0] + 1
runs[1::2] -= runs[::2]
return list(runs)
# Copied from transformers.models.detr.image_processing_detr.convert_segmentation_to_rle
def convert_segmentation_to_rle(segmentation):
"""
Converts given segmentation map of shape `(height, width)` to the run-length encoding (RLE) format.
Args:
segmentation (`torch.Tensor` or `numpy.array`):
A segmentation map of shape `(height, width)` where each value denotes a segment or class id.
Returns:
`List[List]`: A list of lists, where each list is the run-length encoding of a segment / class id.
"""
segment_ids = torch.unique(segmentation)
run_length_encodings = []
for idx in segment_ids:
mask = torch.where(segmentation == idx, 1, 0)
rle = binary_mask_to_rle(mask)
run_length_encodings.append(rle)
return run_length_encodings
# Copied from transformers.models.detr.image_processing_detr.remove_low_and_no_objects
def remove_low_and_no_objects(masks, scores, labels, object_mask_threshold, num_labels):
"""
Binarize the given masks using `object_mask_threshold`, it returns the associated values of `masks`, `scores` and
`labels`.
Args:
masks (`torch.Tensor`):
A tensor of shape `(num_queries, height, width)`.
scores (`torch.Tensor`):
A tensor of shape `(num_queries)`.
labels (`torch.Tensor`):
A tensor of shape `(num_queries)`.
object_mask_threshold (`float`):
A number between 0 and 1 used to binarize the masks.
Raises:
`ValueError`: Raised when the first dimension doesn't match in all input tensors.
Returns:
`Tuple[`torch.Tensor`, `torch.Tensor`, `torch.Tensor`]`: The `masks`, `scores` and `labels` without the region
< `object_mask_threshold`.
"""
if not (masks.shape[0] == scores.shape[0] == labels.shape[0]):
raise ValueError("mask, scores and labels must have the same shape!")
to_keep = labels.ne(num_labels) & (scores > object_mask_threshold)
return masks[to_keep], scores[to_keep], labels[to_keep]
# Copied from transformers.models.detr.image_processing_detr.check_segment_validity
def check_segment_validity(mask_labels, mask_probs, k, mask_threshold=0.5, overlap_mask_area_threshold=0.8):
# Get the mask associated with the k class
mask_k = mask_labels == k
mask_k_area = mask_k.sum()
# Compute the area of all the stuff in query k
original_area = (mask_probs[k] >= mask_threshold).sum()
mask_exists = mask_k_area > 0 and original_area > 0
# Eliminate disconnected tiny segments
if mask_exists:
area_ratio = mask_k_area / original_area
if not area_ratio.item() > overlap_mask_area_threshold:
mask_exists = False
return mask_exists, mask_k
# Copied from transformers.models.detr.image_processing_detr.compute_segments
def compute_segments(
mask_probs,
pred_scores,
pred_labels,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
label_ids_to_fuse: Optional[Set[int]] = None,
target_size: Tuple[int, int] = None,
):
height = mask_probs.shape[1] if target_size is None else target_size[0]
width = mask_probs.shape[2] if target_size is None else target_size[1]
segmentation = torch.zeros((height, width), dtype=torch.int32, device=mask_probs.device)
segments: List[Dict] = []
if target_size is not None:
mask_probs = nn.functional.interpolate(
mask_probs.unsqueeze(0), size=target_size, mode="bilinear", align_corners=False
)[0]
current_segment_id = 0
# Weigh each mask by its prediction score
mask_probs *= pred_scores.view(-1, 1, 1)
mask_labels = mask_probs.argmax(0) # [height, width]
# Keep track of instances of each class
stuff_memory_list: Dict[str, int] = {}
for k in range(pred_labels.shape[0]):
pred_class = pred_labels[k].item()
should_fuse = pred_class in label_ids_to_fuse
# Check if mask exists and large enough to be a segment
mask_exists, mask_k = check_segment_validity(
mask_labels, mask_probs, k, mask_threshold, overlap_mask_area_threshold
)
if mask_exists:
if pred_class in stuff_memory_list:
current_segment_id = stuff_memory_list[pred_class]
else:
current_segment_id += 1
# Add current object segment to final segmentation map
segmentation[mask_k] = current_segment_id
segment_score = round(pred_scores[k].item(), 6)
segments.append(
{
"id": current_segment_id,
"label_id": pred_class,
"was_fused": should_fuse,
"score": segment_score,
}
)
if should_fuse:
stuff_memory_list[pred_class] = current_segment_id
return segmentation, segments
class ConditionalDetrImageProcessor(BaseImageProcessor):
r"""
Constructs a Conditional Detr image processor.
Args:
format (`str`, *optional*, defaults to `"coco_detection"`):
Data format of the annotations. One of "coco_detection" or "coco_panoptic".
do_resize (`bool`, *optional*, defaults to `True`):
Controls whether to resize the image's (height, width) dimensions to the specified `size`. Can be
overridden by the `do_resize` parameter in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"shortest_edge": 800, "longest_edge": 1333}`):
Size of the image's (height, width) dimensions after resizing. Can be overridden by the `size` parameter in
the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use if resizing the image.
do_rescale (`bool`, *optional*, defaults to `True`):
Controls whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the
`do_rescale` parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize:
Controls whether to normalize the image. Can be overridden by the `do_normalize` parameter in the
`preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_MEAN`):
Mean values to use when normalizing the image. Can be a single value or a list of values, one for each
channel. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_STD`):
Standard deviation values to use when normalizing the image. Can be a single value or a list of values, one
for each channel. Can be overridden by the `image_std` parameter in the `preprocess` method.
do_convert_annotations (`bool`, *optional*, defaults to `True`):
Controls whether to convert the annotations to the format expected by the DETR model. Converts the
bounding boxes to the format `(center_x, center_y, width, height)` and in the range `[0, 1]`.
Can be overridden by the `do_convert_annotations` parameter in the `preprocess` method.
do_pad (`bool`, *optional*, defaults to `True`):
Controls whether to pad the image. Can be overridden by the `do_pad` parameter in the `preprocess`
method. If `True` will pad the images in the batch to the largest height and width in the batch.
Padding will be applied to the bottom and right of the image with zeros.
"""
model_input_names = ["pixel_values", "pixel_mask"]
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.__init__
def __init__(
self,
format: Union[str, AnnotationFormat] = AnnotationFormat.COCO_DETECTION,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Union[float, List[float]] = None,
image_std: Union[float, List[float]] = None,
do_convert_annotations: Optional[bool] = None,
do_pad: bool = True,
**kwargs,
) -> None:
if "pad_and_return_pixel_mask" in kwargs:
do_pad = kwargs.pop("pad_and_return_pixel_mask")
if "max_size" in kwargs:
logger.warning_once(
"The `max_size` parameter is deprecated and will be removed in v4.26. "
"Please specify in `size['longest_edge'] instead`.",
)
max_size = kwargs.pop("max_size")
else:
max_size = None if size is None else 1333
size = size if size is not None else {"shortest_edge": 800, "longest_edge": 1333}
size = get_size_dict(size, max_size=max_size, default_to_square=False)
# Backwards compatibility
if do_convert_annotations is None:
do_convert_annotations = do_normalize
super().__init__(**kwargs)
self.format = format
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.do_convert_annotations = do_convert_annotations
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
self.do_pad = do_pad
self._valid_processor_keys = [
"images",
"annotations",
"return_segmentation_masks",
"masks_path",
"do_resize",
"size",
"resample",
"do_rescale",
"rescale_factor",
"do_normalize",
"do_convert_annotations",
"image_mean",
"image_std",
"do_pad",
"format",
"return_tensors",
"data_format",
"input_data_format",
]
@classmethod
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.from_dict with Detr->ConditionalDetr
def from_dict(cls, image_processor_dict: Dict[str, Any], **kwargs):
"""
Overrides the `from_dict` method from the base class to make sure parameters are updated if image processor is
created using from_dict and kwargs e.g. `ConditionalDetrImageProcessor.from_pretrained(checkpoint, size=600,
max_size=800)`
"""
image_processor_dict = image_processor_dict.copy()
if "max_size" in kwargs:
image_processor_dict["max_size"] = kwargs.pop("max_size")
if "pad_and_return_pixel_mask" in kwargs:
image_processor_dict["pad_and_return_pixel_mask"] = kwargs.pop("pad_and_return_pixel_mask")
return super().from_dict(image_processor_dict, **kwargs)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.prepare_annotation with DETR->ConditionalDetr
def prepare_annotation(
self,
image: np.ndarray,
target: Dict,
format: Optional[AnnotationFormat] = None,
return_segmentation_masks: bool = None,
masks_path: Optional[Union[str, pathlib.Path]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Dict:
"""
Prepare an annotation for feeding into ConditionalDetr model.
"""
format = format if format is not None else self.format
if format == AnnotationFormat.COCO_DETECTION:
return_segmentation_masks = False if return_segmentation_masks is None else return_segmentation_masks
target = prepare_coco_detection_annotation(
image, target, return_segmentation_masks, input_data_format=input_data_format
)
elif format == AnnotationFormat.COCO_PANOPTIC:
return_segmentation_masks = True if return_segmentation_masks is None else return_segmentation_masks
target = prepare_coco_panoptic_annotation(
image,
target,
masks_path=masks_path,
return_masks=return_segmentation_masks,
input_data_format=input_data_format,
)
else:
raise ValueError(f"Format {format} is not supported.")
return target
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.prepare
def prepare(self, image, target, return_segmentation_masks=None, masks_path=None):
logger.warning_once(
"The `prepare` method is deprecated and will be removed in a v4.33. "
"Please use `prepare_annotation` instead. Note: the `prepare_annotation` method "
"does not return the image anymore.",
)
target = self.prepare_annotation(image, target, return_segmentation_masks, masks_path, self.format)
return image, target
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.convert_coco_poly_to_mask
def convert_coco_poly_to_mask(self, *args, **kwargs):
logger.warning_once("The `convert_coco_poly_to_mask` method is deprecated and will be removed in v4.33. ")
return convert_coco_poly_to_mask(*args, **kwargs)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.prepare_coco_detection with DETR->ConditionalDetr
def prepare_coco_detection(self, *args, **kwargs):
logger.warning_once("The `prepare_coco_detection` method is deprecated and will be removed in v4.33. ")
return prepare_coco_detection_annotation(*args, **kwargs)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.prepare_coco_panoptic
def prepare_coco_panoptic(self, *args, **kwargs):
logger.warning_once("The `prepare_coco_panoptic` method is deprecated and will be removed in v4.33. ")
return prepare_coco_panoptic_annotation(*args, **kwargs)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.resize
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BILINEAR,
data_format: Optional[ChannelDimension] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize the image to the given size. Size can be `min_size` (scalar) or `(height, width)` tuple. If size is an
int, smaller edge of the image will be matched to this number.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary containing the size to resize to. Can contain the keys `shortest_edge` and `longest_edge` or
`height` and `width`.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BILINEAR`):
Resampling filter to use if resizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
if "max_size" in kwargs:
logger.warning_once(
"The `max_size` parameter is deprecated and will be removed in v4.26. "
"Please specify in `size['longest_edge'] instead`.",
)
max_size = kwargs.pop("max_size")
else:
max_size = None
size = get_size_dict(size, max_size=max_size, default_to_square=False)
if "shortest_edge" in size and "longest_edge" in size:
size = get_resize_output_image_size(
image, size["shortest_edge"], size["longest_edge"], input_data_format=input_data_format
)
elif "height" in size and "width" in size:
size = (size["height"], size["width"])
else:
raise ValueError(
"Size must contain 'height' and 'width' keys or 'shortest_edge' and 'longest_edge' keys. Got"
f" {size.keys()}."
)
image = resize(
image, size=size, resample=resample, data_format=data_format, input_data_format=input_data_format, **kwargs
)
return image
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.resize_annotation
def resize_annotation(
self,
annotation,
orig_size,
size,
resample: PILImageResampling = PILImageResampling.NEAREST,
) -> Dict:
"""
Resize the annotation to match the resized image. If size is an int, smaller edge of the mask will be matched
to this number.
"""
return resize_annotation(annotation, orig_size=orig_size, target_size=size, resample=resample)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.rescale
def rescale(
self,
image: np.ndarray,
rescale_factor: float,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
"""
Rescale the image by the given factor. image = image * rescale_factor.
Args:
image (`np.ndarray`):
Image to rescale.
rescale_factor (`float`):
The value to use for rescaling.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format for the input image. If unset, is inferred from the input image. Can be
one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
"""
return rescale(image, rescale_factor, data_format=data_format, input_data_format=input_data_format)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.normalize_annotation
def normalize_annotation(self, annotation: Dict, image_size: Tuple[int, int]) -> Dict:
"""
Normalize the boxes in the annotation from `[top_left_x, top_left_y, bottom_right_x, bottom_right_y]` to
`[center_x, center_y, width, height]` format and from absolute to relative pixel values.
"""
return normalize_annotation(annotation, image_size=image_size)
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor._update_annotation_for_padded_image
def _update_annotation_for_padded_image(
self,
annotation: Dict,
input_image_size: Tuple[int, int],
output_image_size: Tuple[int, int],
padding,
update_bboxes,
) -> Dict:
"""
Update the annotation for a padded image.
"""
new_annotation = {}
new_annotation["size"] = output_image_size
for key, value in annotation.items():
if key == "masks":
masks = value
masks = pad(
masks,
padding,
mode=PaddingMode.CONSTANT,
constant_values=0,
input_data_format=ChannelDimension.FIRST,
)
masks = safe_squeeze(masks, 1)
new_annotation["masks"] = masks
elif key == "boxes" and update_bboxes:
boxes = value
boxes *= np.asarray(
[
input_image_size[1] / output_image_size[1],
input_image_size[0] / output_image_size[0],
input_image_size[1] / output_image_size[1],
input_image_size[0] / output_image_size[0],
]
)
new_annotation["boxes"] = boxes
elif key == "size":
new_annotation["size"] = output_image_size
else:
new_annotation[key] = value
return new_annotation
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor._pad_image
def _pad_image(
self,
image: np.ndarray,
output_size: Tuple[int, int],
annotation: Optional[Dict[str, Any]] = None,
constant_values: Union[float, Iterable[float]] = 0,
data_format: Optional[ChannelDimension] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
update_bboxes: bool = True,
) -> np.ndarray:
"""
Pad an image with zeros to the given size.
"""
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
output_height, output_width = output_size
pad_bottom = output_height - input_height
pad_right = output_width - input_width
padding = ((0, pad_bottom), (0, pad_right))
padded_image = pad(
image,
padding,
mode=PaddingMode.CONSTANT,
constant_values=constant_values,
data_format=data_format,
input_data_format=input_data_format,
)
if annotation is not None:
annotation = self._update_annotation_for_padded_image(
annotation, (input_height, input_width), (output_height, output_width), padding, update_bboxes
)
return padded_image, annotation
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.pad
def pad(
self,
images: List[np.ndarray],
annotations: Optional[Union[AnnotationType, List[AnnotationType]]] = None,
constant_values: Union[float, Iterable[float]] = 0,
return_pixel_mask: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Optional[ChannelDimension] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
update_bboxes: bool = True,
) -> BatchFeature:
"""
Pads a batch of images to the bottom and right of the image with zeros to the size of largest height and width
in the batch and optionally returns their corresponding pixel mask.
Args:
images (List[`np.ndarray`]):
Images to pad.
annotations (`AnnotationType` or `List[AnnotationType]`, *optional*):
Annotations to transform according to the padding that is applied to the images.
constant_values (`float` or `Iterable[float]`, *optional*):
The value to use for the padding if `mode` is `"constant"`.
return_pixel_mask (`bool`, *optional*, defaults to `True`):
Whether to return a pixel mask.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
update_bboxes (`bool`, *optional*, defaults to `True`):
Whether to update the bounding boxes in the annotations to match the padded images. If the
bounding boxes have not been converted to relative coordinates and `(centre_x, centre_y, width, height)`
format, the bounding boxes will not be updated.
"""
pad_size = get_max_height_width(images, input_data_format=input_data_format)
annotation_list = annotations if annotations is not None else [None] * len(images)
padded_images = []
padded_annotations = []
for image, annotation in zip(images, annotation_list):
padded_image, padded_annotation = self._pad_image(
image,
pad_size,
annotation,
constant_values=constant_values,
data_format=data_format,
input_data_format=input_data_format,
update_bboxes=update_bboxes,
)
padded_images.append(padded_image)
padded_annotations.append(padded_annotation)
data = {"pixel_values": padded_images}
if return_pixel_mask:
masks = [
make_pixel_mask(image=image, output_size=pad_size, input_data_format=input_data_format)
for image in images
]
data["pixel_mask"] = masks
encoded_inputs = BatchFeature(data=data, tensor_type=return_tensors)
if annotations is not None:
encoded_inputs["labels"] = [
BatchFeature(annotation, tensor_type=return_tensors) for annotation in padded_annotations
]
return encoded_inputs
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.preprocess
def preprocess(
self,
images: ImageInput,
annotations: Optional[Union[AnnotationType, List[AnnotationType]]] = None,
return_segmentation_masks: bool = None,
masks_path: Optional[Union[str, pathlib.Path]] = None,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
resample=None, # PILImageResampling
do_rescale: Optional[bool] = None,
rescale_factor: Optional[Union[int, float]] = None,
do_normalize: Optional[bool] = None,
do_convert_annotations: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: Optional[bool] = None,
format: Optional[Union[str, AnnotationFormat]] = None,
return_tensors: Optional[Union[TensorType, str]] = None,
data_format: Union[str, ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> BatchFeature:
"""
Preprocess an image or a batch of images so that it can be used by the model.
Args:
images (`ImageInput`):
Image or batch of images to preprocess. Expects a single or batch of images with pixel values ranging
from 0 to 255. If passing in images with pixel values between 0 and 1, set `do_rescale=False`.
annotations (`AnnotationType` or `List[AnnotationType]`, *optional*):
List of annotations associated with the image or batch of images. If annotation is for object
detection, the annotations should be a dictionary with the following keys:
- "image_id" (`int`): The image id.
- "annotations" (`List[Dict]`): List of annotations for an image. Each annotation should be a
dictionary. An image can have no annotations, in which case the list should be empty.
If annotation is for segmentation, the annotations should be a dictionary with the following keys:
- "image_id" (`int`): The image id.
- "segments_info" (`List[Dict]`): List of segments for an image. Each segment should be a dictionary.
An image can have no segments, in which case the list should be empty.
- "file_name" (`str`): The file name of the image.
return_segmentation_masks (`bool`, *optional*, defaults to self.return_segmentation_masks):
Whether to return segmentation masks.
masks_path (`str` or `pathlib.Path`, *optional*):
Path to the directory containing the segmentation masks.
do_resize (`bool`, *optional*, defaults to self.do_resize):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to self.size):
Size of the image after resizing.
resample (`PILImageResampling`, *optional*, defaults to self.resample):
Resampling filter to use when resizing the image.
do_rescale (`bool`, *optional*, defaults to self.do_rescale):
Whether to rescale the image.
rescale_factor (`float`, *optional*, defaults to self.rescale_factor):
Rescale factor to use when rescaling the image.
do_normalize (`bool`, *optional*, defaults to self.do_normalize):
Whether to normalize the image.
do_convert_annotations (`bool`, *optional*, defaults to self.do_convert_annotations):
Whether to convert the annotations to the format expected by the model. Converts the bounding
boxes from the format `(top_left_x, top_left_y, width, height)` to `(center_x, center_y, width, height)`
and in relative coordinates.
image_mean (`float` or `List[float]`, *optional*, defaults to self.image_mean):
Mean to use when normalizing the image.
image_std (`float` or `List[float]`, *optional*, defaults to self.image_std):
Standard deviation to use when normalizing the image.
do_pad (`bool`, *optional*, defaults to self.do_pad):
Whether to pad the image. If `True` will pad the images in the batch to the largest image in the batch
and create a pixel mask. Padding will be applied to the bottom and right of the image with zeros.
format (`str` or `AnnotationFormat`, *optional*, defaults to self.format):
Format of the annotations.
return_tensors (`str` or `TensorType`, *optional*, defaults to self.return_tensors):
Type of tensors to return. If `None`, will return the list of images.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
if "pad_and_return_pixel_mask" in kwargs:
logger.warning_once(
"The `pad_and_return_pixel_mask` argument is deprecated and will be removed in a future version, "
"use `do_pad` instead."
)
do_pad = kwargs.pop("pad_and_return_pixel_mask")
max_size = None
if "max_size" in kwargs:
logger.warning_once(
"The `max_size` argument is deprecated and will be removed in a future version, use"
" `size['longest_edge']` instead."
)
size = kwargs.pop("max_size")
do_resize = self.do_resize if do_resize is None else do_resize
size = self.size if size is None else size
size = get_size_dict(size=size, max_size=max_size, default_to_square=False)
resample = self.resample if resample is None else resample
do_rescale = self.do_rescale if do_rescale is None else do_rescale
rescale_factor = self.rescale_factor if rescale_factor is None else rescale_factor
do_normalize = self.do_normalize if do_normalize is None else do_normalize
image_mean = self.image_mean if image_mean is None else image_mean
image_std = self.image_std if image_std is None else image_std
do_convert_annotations = (
self.do_convert_annotations if do_convert_annotations is None else do_convert_annotations
)
do_pad = self.do_pad if do_pad is None else do_pad
format = self.format if format is None else format
images = make_list_of_images(images)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_kwargs(captured_kwargs=kwargs.keys(), valid_processor_keys=self._valid_processor_keys)
# Here, the pad() method pads to the maximum of (width, height). It does not need to be validated.
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_resize=do_resize,
size=size,
resample=resample,
)
if annotations is not None and isinstance(annotations, dict):
annotations = [annotations]
if annotations is not None and len(images) != len(annotations):
raise ValueError(
f"The number of images ({len(images)}) and annotations ({len(annotations)}) do not match."
)
format = AnnotationFormat(format)
if annotations is not None:
validate_annotations(format, SUPPORTED_ANNOTATION_FORMATS, annotations)
if (
masks_path is not None
and format == AnnotationFormat.COCO_PANOPTIC
and not isinstance(masks_path, (pathlib.Path, str))
):
raise ValueError(
"The path to the directory containing the mask PNG files should be provided as a"
f" `pathlib.Path` or string object, but is {type(masks_path)} instead."
)
# All transformations expect numpy arrays
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
# prepare (COCO annotations as a list of Dict -> DETR target as a single Dict per image)
if annotations is not None:
prepared_images = []
prepared_annotations = []
for image, target in zip(images, annotations):
target = self.prepare_annotation(
image,
target,
format,
return_segmentation_masks=return_segmentation_masks,
masks_path=masks_path,
input_data_format=input_data_format,
)
prepared_images.append(image)
prepared_annotations.append(target)
images = prepared_images
annotations = prepared_annotations
del prepared_images, prepared_annotations
# transformations
if do_resize:
if annotations is not None:
resized_images, resized_annotations = [], []
for image, target in zip(images, annotations):
orig_size = get_image_size(image, input_data_format)
resized_image = self.resize(
image, size=size, max_size=max_size, resample=resample, input_data_format=input_data_format
)
resized_annotation = self.resize_annotation(
target, orig_size, get_image_size(resized_image, input_data_format)
)
resized_images.append(resized_image)
resized_annotations.append(resized_annotation)
images = resized_images
annotations = resized_annotations
del resized_images, resized_annotations
else:
images = [
self.resize(image, size=size, resample=resample, input_data_format=input_data_format)
for image in images
]
if do_rescale:
images = [self.rescale(image, rescale_factor, input_data_format=input_data_format) for image in images]
if do_normalize:
images = [
self.normalize(image, image_mean, image_std, input_data_format=input_data_format) for image in images
]
if do_convert_annotations and annotations is not None:
annotations = [
self.normalize_annotation(annotation, get_image_size(image, input_data_format))
for annotation, image in zip(annotations, images)
]
if do_pad:
# Pads images and returns their mask: {'pixel_values': ..., 'pixel_mask': ...}
encoded_inputs = self.pad(
images,
annotations=annotations,
return_pixel_mask=True,
data_format=data_format,
input_data_format=input_data_format,
update_bboxes=do_convert_annotations,
return_tensors=return_tensors,
)
else:
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format)
for image in images
]
encoded_inputs = BatchFeature(data={"pixel_values": images}, tensor_type=return_tensors)
if annotations is not None:
encoded_inputs["labels"] = [
BatchFeature(annotation, tensor_type=return_tensors) for annotation in annotations
]
return encoded_inputs
# POSTPROCESSING METHODS - TODO: add support for other frameworks
def post_process(self, outputs, target_sizes):
"""
Converts the output of [`ConditionalDetrForObjectDetection`] into the format expected by the Pascal VOC format (xmin, ymin, xmax, ymax).
Only supports PyTorch.
Args:
outputs ([`ConditionalDetrObjectDetectionOutput`]):
Raw outputs of the model.
target_sizes (`torch.Tensor` of shape `(batch_size, 2)`):
Tensor containing the size (h, w) of each image of the batch. For evaluation, this must be the original
image size (before any data augmentation). For visualization, this should be the image size after data
augment, but before padding.
Returns:
`List[Dict]`: A list of dictionaries, each dictionary containing the scores, labels and boxes for an image
in the batch as predicted by the model.
"""
logging.warning_once(
"`post_process` is deprecated and will be removed in v5 of Transformers, please use"
" `post_process_object_detection` instead, with `threshold=0.` for equivalent results.",
)
out_logits, out_bbox = outputs.logits, outputs.pred_boxes
if len(out_logits) != len(target_sizes):
raise ValueError("Make sure that you pass in as many target sizes as the batch dimension of the logits")
if target_sizes.shape[1] != 2:
raise ValueError("Each element of target_sizes must contain the size (h, w) of each image of the batch")
prob = out_logits.sigmoid()
topk_values, topk_indexes = torch.topk(prob.view(out_logits.shape[0], -1), 300, dim=1)
scores = topk_values
topk_boxes = torch.div(topk_indexes, out_logits.shape[2], rounding_mode="floor")
labels = topk_indexes % out_logits.shape[2]
boxes = center_to_corners_format(out_bbox)
boxes = torch.gather(boxes, 1, topk_boxes.unsqueeze(-1).repeat(1, 1, 4))
# and from relative [0, 1] to absolute [0, height] coordinates
img_h, img_w = target_sizes.unbind(1)
scale_fct = torch.stack([img_w, img_h, img_w, img_h], dim=1)
boxes = boxes * scale_fct[:, None, :]
results = [{"scores": s, "labels": l, "boxes": b} for s, l, b in zip(scores, labels, boxes)]
return results
# Copied from transformers.models.deformable_detr.image_processing_deformable_detr.DeformableDetrImageProcessor.post_process_object_detection with DeformableDetr->ConditionalDetr
def post_process_object_detection(
self, outputs, threshold: float = 0.5, target_sizes: Union[TensorType, List[Tuple]] = None, top_k: int = 100
):
"""
Converts the raw output of [`ConditionalDetrForObjectDetection`] into final bounding boxes in (top_left_x,
top_left_y, bottom_right_x, bottom_right_y) format. Only supports PyTorch.
Args:
outputs ([`DetrObjectDetectionOutput`]):
Raw outputs of the model.
threshold (`float`, *optional*):
Score threshold to keep object detection predictions.
target_sizes (`torch.Tensor` or `List[Tuple[int, int]]`, *optional*):
Tensor of shape `(batch_size, 2)` or list of tuples (`Tuple[int, int]`) containing the target size
(height, width) of each image in the batch. If left to None, predictions will not be resized.
top_k (`int`, *optional*, defaults to 100):
Keep only top k bounding boxes before filtering by thresholding.
Returns:
`List[Dict]`: A list of dictionaries, each dictionary containing the scores, labels and boxes for an image
in the batch as predicted by the model.
"""
out_logits, out_bbox = outputs.logits, outputs.pred_boxes
if target_sizes is not None:
if len(out_logits) != len(target_sizes):
raise ValueError(
"Make sure that you pass in as many target sizes as the batch dimension of the logits"
)
prob = out_logits.sigmoid()
prob = prob.view(out_logits.shape[0], -1)
k_value = min(top_k, prob.size(1))
topk_values, topk_indexes = torch.topk(prob, k_value, dim=1)
scores = topk_values
topk_boxes = torch.div(topk_indexes, out_logits.shape[2], rounding_mode="floor")
labels = topk_indexes % out_logits.shape[2]
boxes = center_to_corners_format(out_bbox)
boxes = torch.gather(boxes, 1, topk_boxes.unsqueeze(-1).repeat(1, 1, 4))
# and from relative [0, 1] to absolute [0, height] coordinates
if target_sizes is not None:
if isinstance(target_sizes, List):
img_h = torch.Tensor([i[0] for i in target_sizes])
img_w = torch.Tensor([i[1] for i in target_sizes])
else:
img_h, img_w = target_sizes.unbind(1)
scale_fct = torch.stack([img_w, img_h, img_w, img_h], dim=1).to(boxes.device)
boxes = boxes * scale_fct[:, None, :]
results = []
for s, l, b in zip(scores, labels, boxes):
score = s[s > threshold]
label = l[s > threshold]
box = b[s > threshold]
results.append({"scores": score, "labels": label, "boxes": box})
return results
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.post_process_semantic_segmentation with Detr->ConditionalDetr
def post_process_semantic_segmentation(self, outputs, target_sizes: List[Tuple[int, int]] = None):
"""
Converts the output of [`ConditionalDetrForSegmentation`] into semantic segmentation maps. Only supports PyTorch.
Args:
outputs ([`ConditionalDetrForSegmentation`]):
Raw outputs of the model.
target_sizes (`List[Tuple[int, int]]`, *optional*):
A list of tuples (`Tuple[int, int]`) containing the target size (height, width) of each image in the
batch. If unset, predictions will not be resized.
Returns:
`List[torch.Tensor]`:
A list of length `batch_size`, where each item is a semantic segmentation map of shape (height, width)
corresponding to the target_sizes entry (if `target_sizes` is specified). Each entry of each
`torch.Tensor` correspond to a semantic class id.
"""
class_queries_logits = outputs.logits # [batch_size, num_queries, num_classes+1]
masks_queries_logits = outputs.pred_masks # [batch_size, num_queries, height, width]
# Remove the null class `[..., :-1]`
masks_classes = class_queries_logits.softmax(dim=-1)[..., :-1]
masks_probs = masks_queries_logits.sigmoid() # [batch_size, num_queries, height, width]
# Semantic segmentation logits of shape (batch_size, num_classes, height, width)
segmentation = torch.einsum("bqc, bqhw -> bchw", masks_classes, masks_probs)
batch_size = class_queries_logits.shape[0]
# Resize logits and compute semantic segmentation maps
if target_sizes is not None:
if batch_size != len(target_sizes):
raise ValueError(
"Make sure that you pass in as many target sizes as the batch dimension of the logits"
)
semantic_segmentation = []
for idx in range(batch_size):
resized_logits = nn.functional.interpolate(
segmentation[idx].unsqueeze(dim=0), size=target_sizes[idx], mode="bilinear", align_corners=False
)
semantic_map = resized_logits[0].argmax(dim=0)
semantic_segmentation.append(semantic_map)
else:
semantic_segmentation = segmentation.argmax(dim=1)
semantic_segmentation = [semantic_segmentation[i] for i in range(semantic_segmentation.shape[0])]
return semantic_segmentation
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.post_process_instance_segmentation with Detr->ConditionalDetr
def post_process_instance_segmentation(
self,
outputs,
threshold: float = 0.5,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
target_sizes: Optional[List[Tuple[int, int]]] = None,
return_coco_annotation: Optional[bool] = False,
) -> List[Dict]:
"""
Converts the output of [`ConditionalDetrForSegmentation`] into instance segmentation predictions. Only supports PyTorch.
Args:
outputs ([`ConditionalDetrForSegmentation`]):
Raw outputs of the model.
threshold (`float`, *optional*, defaults to 0.5):
The probability score threshold to keep predicted instance masks.
mask_threshold (`float`, *optional*, defaults to 0.5):
Threshold to use when turning the predicted masks into binary values.
overlap_mask_area_threshold (`float`, *optional*, defaults to 0.8):
The overlap mask area threshold to merge or discard small disconnected parts within each binary
instance mask.
target_sizes (`List[Tuple]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]]`) corresponds to the requested
final size (height, width) of each prediction. If unset, predictions will not be resized.
return_coco_annotation (`bool`, *optional*):
Defaults to `False`. If set to `True`, segmentation maps are returned in COCO run-length encoding (RLE)
format.
Returns:
`List[Dict]`: A list of dictionaries, one per image, each dictionary containing two keys:
- **segmentation** -- A tensor of shape `(height, width)` where each pixel represents a `segment_id` or
`List[List]` run-length encoding (RLE) of the segmentation map if return_coco_annotation is set to
`True`. Set to `None` if no mask if found above `threshold`.
- **segments_info** -- A dictionary that contains additional information on each segment.
- **id** -- An integer representing the `segment_id`.
- **label_id** -- An integer representing the label / semantic class id corresponding to `segment_id`.
- **score** -- Prediction score of segment with `segment_id`.
"""
class_queries_logits = outputs.logits # [batch_size, num_queries, num_classes+1]
masks_queries_logits = outputs.pred_masks # [batch_size, num_queries, height, width]
batch_size = class_queries_logits.shape[0]
num_labels = class_queries_logits.shape[-1] - 1
mask_probs = masks_queries_logits.sigmoid() # [batch_size, num_queries, height, width]
# Predicted label and score of each query (batch_size, num_queries)
pred_scores, pred_labels = nn.functional.softmax(class_queries_logits, dim=-1).max(-1)
# Loop over items in batch size
results: List[Dict[str, TensorType]] = []
for i in range(batch_size):
mask_probs_item, pred_scores_item, pred_labels_item = remove_low_and_no_objects(
mask_probs[i], pred_scores[i], pred_labels[i], threshold, num_labels
)
# No mask found
if mask_probs_item.shape[0] <= 0:
height, width = target_sizes[i] if target_sizes is not None else mask_probs_item.shape[1:]
segmentation = torch.zeros((height, width)) - 1
results.append({"segmentation": segmentation, "segments_info": []})
continue
# Get segmentation map and segment information of batch item
target_size = target_sizes[i] if target_sizes is not None else None
segmentation, segments = compute_segments(
mask_probs=mask_probs_item,
pred_scores=pred_scores_item,
pred_labels=pred_labels_item,
mask_threshold=mask_threshold,
overlap_mask_area_threshold=overlap_mask_area_threshold,
label_ids_to_fuse=[],
target_size=target_size,
)
# Return segmentation map in run-length encoding (RLE) format
if return_coco_annotation:
segmentation = convert_segmentation_to_rle(segmentation)
results.append({"segmentation": segmentation, "segments_info": segments})
return results
# Copied from transformers.models.detr.image_processing_detr.DetrImageProcessor.post_process_panoptic_segmentation with Detr->ConditionalDetr
def post_process_panoptic_segmentation(
self,
outputs,
threshold: float = 0.5,
mask_threshold: float = 0.5,
overlap_mask_area_threshold: float = 0.8,
label_ids_to_fuse: Optional[Set[int]] = None,
target_sizes: Optional[List[Tuple[int, int]]] = None,
) -> List[Dict]:
"""
Converts the output of [`ConditionalDetrForSegmentation`] into image panoptic segmentation predictions. Only supports
PyTorch.
Args:
outputs ([`ConditionalDetrForSegmentation`]):
The outputs from [`ConditionalDetrForSegmentation`].
threshold (`float`, *optional*, defaults to 0.5):
The probability score threshold to keep predicted instance masks.
mask_threshold (`float`, *optional*, defaults to 0.5):
Threshold to use when turning the predicted masks into binary values.
overlap_mask_area_threshold (`float`, *optional*, defaults to 0.8):
The overlap mask area threshold to merge or discard small disconnected parts within each binary
instance mask.
label_ids_to_fuse (`Set[int]`, *optional*):
The labels in this state will have all their instances be fused together. For instance we could say
there can only be one sky in an image, but several persons, so the label ID for sky would be in that
set, but not the one for person.
target_sizes (`List[Tuple]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]]`) corresponds to the requested
final size (height, width) of each prediction in batch. If unset, predictions will not be resized.
Returns:
`List[Dict]`: A list of dictionaries, one per image, each dictionary containing two keys:
- **segmentation** -- a tensor of shape `(height, width)` where each pixel represents a `segment_id` or
`None` if no mask if found above `threshold`. If `target_sizes` is specified, segmentation is resized to
the corresponding `target_sizes` entry.
- **segments_info** -- A dictionary that contains additional information on each segment.
- **id** -- an integer representing the `segment_id`.
- **label_id** -- An integer representing the label / semantic class id corresponding to `segment_id`.
- **was_fused** -- a boolean, `True` if `label_id` was in `label_ids_to_fuse`, `False` otherwise.
Multiple instances of the same class / label were fused and assigned a single `segment_id`.
- **score** -- Prediction score of segment with `segment_id`.
"""
if label_ids_to_fuse is None:
logger.warning_once("`label_ids_to_fuse` unset. No instance will be fused.")
label_ids_to_fuse = set()
class_queries_logits = outputs.logits # [batch_size, num_queries, num_classes+1]
masks_queries_logits = outputs.pred_masks # [batch_size, num_queries, height, width]
batch_size = class_queries_logits.shape[0]
num_labels = class_queries_logits.shape[-1] - 1
mask_probs = masks_queries_logits.sigmoid() # [batch_size, num_queries, height, width]
# Predicted label and score of each query (batch_size, num_queries)
pred_scores, pred_labels = nn.functional.softmax(class_queries_logits, dim=-1).max(-1)
# Loop over items in batch size
results: List[Dict[str, TensorType]] = []
for i in range(batch_size):
mask_probs_item, pred_scores_item, pred_labels_item = remove_low_and_no_objects(
mask_probs[i], pred_scores[i], pred_labels[i], threshold, num_labels
)
# No mask found
if mask_probs_item.shape[0] <= 0:
height, width = target_sizes[i] if target_sizes is not None else mask_probs_item.shape[1:]
segmentation = torch.zeros((height, width)) - 1
results.append({"segmentation": segmentation, "segments_info": []})
continue
# Get segmentation map and segment information of batch item
target_size = target_sizes[i] if target_sizes is not None else None
segmentation, segments = compute_segments(
mask_probs=mask_probs_item,
pred_scores=pred_scores_item,
pred_labels=pred_labels_item,
mask_threshold=mask_threshold,
overlap_mask_area_threshold=overlap_mask_area_threshold,
label_ids_to_fuse=label_ids_to_fuse,
target_size=target_size,
)
results.append({"segmentation": segmentation, "segments_info": segments})
return results
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/llava/configuration_llava.py
|
# coding=utf-8
# Copyright 2023 Microsoft Research & University of Wisconsin-Madison and the HuggingFace Inc. team. All rights reserved.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Llava model configuration"""
import warnings
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ..auto import CONFIG_MAPPING
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import LLAVA_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class LlavaConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`LlavaForConditionalGeneration`]. It is used to instantiate an
Llava model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Llava-9B.
e.g. [llava-hf/llava-9b](https://huggingface.co/llava-hf/llava-9b)
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vision_config (`Union[AutoConfig, dict]`, *optional*, defaults to `CLIPVisionConfig`):
The config object or dictionary of the vision backbone.
text_config (`Union[AutoConfig, dict]`, *optional*, defaults to `LlamaConfig`):
The config object or dictionary of the text backbone.
ignore_index (`int`, *optional*, defaults to -100):
The ignore index for the loss function.
image_token_index (`int`, *optional*, defaults to 32000):
The image token index to encode the image prompt.
projector_hidden_act (`str`, *optional*, defaults to `"gelu"`):
The activation function used by the multimodal projector.
vision_feature_select_strategy (`str`, *optional*, defaults to `"default"`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`.
vision_feature_layer (`int`, *optional*, defaults to -2):
The index of the layer to select the vision feature.
Example:
```python
>>> from transformers import LlavaForConditionalGeneration, LlavaConfig, CLIPVisionConfig, LlamaConfig
>>> # Initializing a CLIP-vision config
>>> vision_config = CLIPVisionConfig()
>>> # Initializing a Llama config
>>> text_config = LlamaConfig()
>>> # Initializing a Llava llava-1.5-7b style configuration
>>> configuration = LlavaConfig(vision_config, text_config)
>>> # Initializing a model from the llava-1.5-7b style configuration
>>> model = LlavaForConditionalGeneration(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "llava"
is_composition = False
def __init__(
self,
vision_config=None,
text_config=None,
ignore_index=-100,
image_token_index=32000,
projector_hidden_act="gelu",
vision_feature_select_strategy="default",
vision_feature_layer=-2,
**kwargs,
):
self.ignore_index = ignore_index
self.image_token_index = image_token_index
self.projector_hidden_act = projector_hidden_act
if vision_feature_select_strategy not in ["default", "full"]:
raise ValueError(
"vision_feature_select_strategy should be one of 'default', 'full'."
f"Got: {vision_feature_select_strategy}"
)
if "vocab_size" in kwargs:
warnings.warn(
"The `vocab_size` argument is deprecated and will be removed in v4.42, since it can be inferred from the `text_config`. Passing this argument has no effect",
FutureWarning,
)
self.vision_feature_select_strategy = vision_feature_select_strategy
self.vision_feature_layer = vision_feature_layer
if isinstance(vision_config, dict):
vision_config["model_type"] = (
vision_config["model_type"] if "model_type" in vision_config else "clip_vision_model"
)
vision_config = CONFIG_MAPPING[vision_config["model_type"]](**vision_config)
elif vision_config is None:
vision_config = CONFIG_MAPPING["clip_vision_model"](
intermediate_size=4096,
hidden_size=1024,
patch_size=14,
image_size=336,
num_hidden_layers=24,
num_attention_heads=16,
vocab_size=32000,
projection_dim=768,
)
self.vision_config = vision_config
if isinstance(text_config, dict):
text_config["model_type"] = text_config["model_type"] if "model_type" in text_config else "llama"
text_config = CONFIG_MAPPING[text_config["model_type"]](**text_config)
elif text_config is None:
text_config = CONFIG_MAPPING["llama"]()
self.text_config = text_config
self._vocab_size = self.text_config.vocab_size
super().__init__(**kwargs)
@property
def vocab_size(self):
warnings.warn(
"The `vocab_size` attribute is deprecated and will be removed in v4.42, Please use `text_config.vocab_size` instead.",
FutureWarning,
)
return self._vocab_size
@vocab_size.setter
def vocab_size(self, value):
self._vocab_size = value
def to_dict(self):
output = super().to_dict()
output.pop("_vocab_size", None)
return output
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/llava/modeling_llava.py
|
# coding=utf-8
# Copyright 2023 the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch Llava model."""
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ... import PreTrainedModel
from ...activations import ACT2FN
from ...cache_utils import Cache
from ...modeling_outputs import ModelOutput
from ...utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from ..auto import AutoModel, AutoModelForCausalLM
from .configuration_llava import LlavaConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "LlavaConfig"
from ..deprecated._archive_maps import LLAVA_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
# Copied from transformers.models.idefics.modeling_idefics.IdeficsCausalLMOutputWithPast with Idefics->Llava
class LlavaCausalLMOutputWithPast(ModelOutput):
"""
Base class for Llava causal language model (or autoregressive) outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss (for next-token prediction).
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`)
Contains pre-computed hidden-states (key and values in the self-attention blocks) that can be used (see
`past_key_values` input) to speed up sequential decoding.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
image_hidden_states (`tuple(torch.FloatTensor)`, *optional*):
Tuple of `torch.FloatTensor` (one for the output of the image embeddings, `(batch_size, num_images,
sequence_length, hidden_size)`.
image_hidden_states of the model produced by the vision encoder, and optionally by the perceiver
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
past_key_values: Optional[List[torch.FloatTensor]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
image_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
class LlavaMultiModalProjector(nn.Module):
def __init__(self, config: LlavaConfig):
super().__init__()
self.linear_1 = nn.Linear(config.vision_config.hidden_size, config.text_config.hidden_size, bias=True)
self.act = ACT2FN[config.projector_hidden_act]
self.linear_2 = nn.Linear(config.text_config.hidden_size, config.text_config.hidden_size, bias=True)
def forward(self, image_features):
hidden_states = self.linear_1(image_features)
hidden_states = self.act(hidden_states)
hidden_states = self.linear_2(hidden_states)
return hidden_states
LLAVA_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`LlavaConfig`] or [`LlavaVisionConfig`]):
Model configuration class with all the parameters of the model. Initializing with a config file does not
load the weights associated with the model, only the configuration. Check out the
[`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
@add_start_docstrings(
"The bare LLaMA Model outputting raw hidden-states without any specific head on top.",
LLAVA_START_DOCSTRING,
)
class LlavaPreTrainedModel(PreTrainedModel):
config_class = LlavaConfig
base_model_prefix = "model"
supports_gradient_checkpointing = True
_no_split_modules = ["LlavaVisionAttention"]
_skip_keys_device_placement = "past_key_values"
_supports_flash_attn_2 = True
def _init_weights(self, module):
# important: this ported version of Llava isn't meant for training from scratch - only
# inference and fine-tuning - so the proper init weights code has been removed - the original codebase
# https://github.com/haotian-liu/LLaVA/tree/main/llava should serve for that purpose
std = (
self.config.initializer_range
if hasattr(self.config, "initializer_range")
else self.config.text_config.initializer_range
)
if hasattr(module, "class_embedding"):
module.class_embedding.data.normal_(mean=0.0, std=std)
if isinstance(module, (nn.Linear, nn.Conv2d)):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
@property
def _supports_sdpa(self):
"""
Retrieve language_model's attribute to check whether the model supports
SDPA or not.
"""
return self.language_model._supports_sdpa
LLAVA_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, image_size, image_size)):
The tensors corresponding to the input images. Pixel values can be obtained using
[`AutoImageProcessor`]. See [`CLIPImageProcessor.__call__`] for details ([]`LlavaProcessor`] uses
[`CLIPImageProcessor`] for processing images).
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
If `past_key_values` is used, optionally only the last `decoder_input_ids` have to be input (see
`past_key_values`).
If you want to change padding behavior, you should read [`modeling_opt._prepare_decoder_attention_mask`]
and modify to your needs. See diagram 1 in [the paper](https://arxiv.org/abs/1910.13461) for more
information on the default strategy.
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.n_positions - 1]`. [What are position IDs?](../glossary#position-ids)
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `use_cache=True` is passed or when `config.use_cache=True`):
Tuple of `tuple(torch.FloatTensor)` of length `config.n_layers`, with each tuple having 2 tensors of shape
`(batch_size, num_heads, sequence_length, embed_size_per_head)`) and 2 additional tensors of shape
`(batch_size, num_heads, encoder_sequence_length, embed_size_per_head)`.
Contains pre-computed hidden-states (key and values in the self-attention blocks and in the cross-attention
blocks) that can be used (see `past_key_values` input) to speed up sequential decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
vision_feature_layer (`int`, *optional*, defaults to -2):
The index of the layer to select the vision feature.
vision_feature_select_strategy (`str`, *optional*, defaults to `"default"`):
The feature selection strategy used to select the vision feature from the vision backbone.
Can be one of `"default"` or `"full"`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"""The LLAVA model which consists of a vision backbone and a language model.""",
LLAVA_START_DOCSTRING,
)
class LlavaForConditionalGeneration(LlavaPreTrainedModel):
def __init__(self, config: LlavaConfig):
super().__init__(config)
self.vision_tower = AutoModel.from_config(config.vision_config)
self.multi_modal_projector = LlavaMultiModalProjector(config)
self.vocab_size = config.text_config.vocab_size
self.language_model = AutoModelForCausalLM.from_config(
config.text_config, attn_implementation=config._attn_implementation
)
self.pad_token_id = self.config.pad_token_id if self.config.pad_token_id is not None else -1
self.post_init()
def get_input_embeddings(self):
return self.language_model.get_input_embeddings()
def set_input_embeddings(self, value):
self.language_model.set_input_embeddings(value)
def get_output_embeddings(self):
return self.language_model.get_output_embeddings()
def set_output_embeddings(self, new_embeddings):
self.language_model.set_output_embeddings(new_embeddings)
def set_decoder(self, decoder):
self.language_model.set_decoder(decoder)
def get_decoder(self):
return self.language_model.get_decoder()
def tie_weights(self):
return self.language_model.tie_weights()
def resize_token_embeddings(self, new_num_tokens: Optional[int] = None, pad_to_multiple_of=None) -> nn.Embedding:
model_embeds = self.language_model.resize_token_embeddings(new_num_tokens, pad_to_multiple_of)
# update vocab size
self.config.text_config.vocab_size = model_embeds.num_embeddings
self.vocab_size = model_embeds.num_embeddings
return model_embeds
def _merge_input_ids_with_image_features(self, image_features, inputs_embeds, input_ids, attention_mask, labels):
num_images, num_image_patches, embed_dim = image_features.shape
batch_size, sequence_length = input_ids.shape
left_padding = not torch.sum(input_ids[:, -1] == torch.tensor(self.pad_token_id))
# 1. Create a mask to know where special image tokens are
special_image_token_mask = input_ids == self.config.image_token_index
num_special_image_tokens = torch.sum(special_image_token_mask, dim=-1)
# Compute the maximum embed dimension
max_embed_dim = (num_special_image_tokens.max() * (num_image_patches - 1)) + sequence_length
batch_indices, non_image_indices = torch.where(input_ids != self.config.image_token_index)
# 2. Compute the positions where text should be written
# Calculate new positions for text tokens in merged image-text sequence.
# `special_image_token_mask` identifies image tokens. Each image token will be replaced by `nb_text_tokens_per_images - 1` text tokens.
# `torch.cumsum` computes how each image token shifts subsequent text token positions.
# - 1 to adjust for zero-based indexing, as `cumsum` inherently increases indices by one.
new_token_positions = torch.cumsum((special_image_token_mask * (num_image_patches - 1) + 1), -1) - 1
nb_image_pad = max_embed_dim - 1 - new_token_positions[:, -1]
if left_padding:
new_token_positions += nb_image_pad[:, None] # offset for left padding
text_to_overwrite = new_token_positions[batch_indices, non_image_indices]
# 3. Create the full embedding, already padded to the maximum position
final_embedding = torch.zeros(
batch_size, max_embed_dim, embed_dim, dtype=inputs_embeds.dtype, device=inputs_embeds.device
)
final_attention_mask = torch.zeros(
batch_size, max_embed_dim, dtype=attention_mask.dtype, device=inputs_embeds.device
)
if labels is not None:
final_labels = torch.full(
(batch_size, max_embed_dim), self.config.ignore_index, dtype=input_ids.dtype, device=input_ids.device
)
# In case the Vision model or the Language model has been offloaded to CPU, we need to manually
# set the corresponding tensors into their correct target device.
target_device = inputs_embeds.device
batch_indices, non_image_indices, text_to_overwrite = (
batch_indices.to(target_device),
non_image_indices.to(target_device),
text_to_overwrite.to(target_device),
)
attention_mask = attention_mask.to(target_device)
# 4. Fill the embeddings based on the mask. If we have ["hey" "<image>", "how", "are"]
# we need to index copy on [0, 577, 578, 579] for the text and [1:576] for the image features
final_embedding[batch_indices, text_to_overwrite] = inputs_embeds[batch_indices, non_image_indices]
final_attention_mask[batch_indices, text_to_overwrite] = attention_mask[batch_indices, non_image_indices]
if labels is not None:
final_labels[batch_indices, text_to_overwrite] = labels[batch_indices, non_image_indices]
# 5. Fill the embeddings corresponding to the images. Anything that is not `text_positions` needs filling (#29835)
image_to_overwrite = torch.full(
(batch_size, max_embed_dim), True, dtype=torch.bool, device=inputs_embeds.device
)
image_to_overwrite[batch_indices, text_to_overwrite] = False
image_to_overwrite &= image_to_overwrite.cumsum(-1) - 1 >= nb_image_pad[:, None].to(target_device)
if image_to_overwrite.sum() != image_features.shape[:-1].numel():
raise ValueError(
f"The input provided to the model are wrong. The number of image tokens is {torch.sum(special_image_token_mask)} while"
f" the number of image given to the model is {num_images}. This prevents correct indexing and breaks batch generation."
)
final_embedding[image_to_overwrite] = image_features.contiguous().reshape(-1, embed_dim).to(target_device)
final_attention_mask |= image_to_overwrite
position_ids = (final_attention_mask.cumsum(-1) - 1).masked_fill_((final_attention_mask == 0), 1)
# 6. Mask out the embedding at padding positions, as we later use the past_key_value value to determine the non-attended tokens.
batch_indices, pad_indices = torch.where(input_ids == self.pad_token_id)
indices_to_mask = new_token_positions[batch_indices, pad_indices]
final_embedding[batch_indices, indices_to_mask] = 0
if labels is None:
final_labels = None
return final_embedding, final_attention_mask, final_labels, position_ids
@add_start_docstrings_to_model_forward(LLAVA_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=LlavaCausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: torch.LongTensor = None,
pixel_values: torch.FloatTensor = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
vision_feature_layer: Optional[int] = None,
vision_feature_select_strategy: Optional[str] = None,
labels: Optional[torch.LongTensor] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, LlavaCausalLMOutputWithPast]:
r"""
Args:
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
(masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
Returns:
Example:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, LlavaForConditionalGeneration
>>> model = LlavaForConditionalGeneration.from_pretrained("llava-hf/llava-1.5-7b-hf")
>>> processor = AutoProcessor.from_pretrained("llava-hf/llava-1.5-7b-hf")
>>> prompt = "USER: <image>\nWhat's the content of the image? ASSISTANT:"
>>> url = "https://www.ilankelman.org/stopsigns/australia.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(text=prompt, images=image, return_tensors="pt")
>>> # Generate
>>> generate_ids = model.generate(**inputs, max_new_tokens=15)
>>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
"USER: \nWhat's the content of the image? ASSISTANT: The image features a busy city street with a stop sign prominently displayed"
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_feature_layer = (
vision_feature_layer if vision_feature_layer is not None else self.config.vision_feature_layer
)
vision_feature_select_strategy = (
vision_feature_select_strategy
if vision_feature_select_strategy is not None
else self.config.vision_feature_select_strategy
)
if inputs_embeds is None:
# 1. Extra the input embeddings
inputs_embeds = self.get_input_embeddings()(input_ids)
# 2. Merge text and images
if pixel_values is not None and input_ids.shape[1] != 1:
image_outputs = self.vision_tower(pixel_values, output_hidden_states=True)
# this is not memory efficient at all (output_hidden_states=True) will save all the hidden stated.
selected_image_feature = image_outputs.hidden_states[vision_feature_layer]
if vision_feature_select_strategy == "default":
selected_image_feature = selected_image_feature[:, 1:]
elif vision_feature_select_strategy == "full":
selected_image_feature = selected_image_feature
else:
raise ValueError(
f"Unexpected select feature strategy: {self.config.vision_feature_select_strategy}"
)
image_features = self.multi_modal_projector(selected_image_feature)
inputs_embeds = inputs_embeds.to(image_features.dtype)
inputs_embeds, attention_mask, labels, position_ids = self._merge_input_ids_with_image_features(
image_features, inputs_embeds, input_ids, attention_mask, labels
)
if labels is None:
labels = torch.full_like(attention_mask, self.config.ignore_index).to(torch.long)
# In case input_ids.shape[1] == 1 & pixel_values==None & past_key_values != None, we are in the case of
# generation with cache
elif past_key_values is not None and pixel_values is not None and input_ids.shape[1] == 1:
# Retrieve the first layer to inspect the logits and mask out the hidden states
# that are set to 0
first_layer_past_key_value = past_key_values[0][0][:, :, :, 0]
# Sum all dimensions of head_dim (-2) to avoid random errors such as: https://github.com/huggingface/transformers/pull/28032#issuecomment-1863691941
batch_index, non_attended_tokens = torch.where(first_layer_past_key_value.float().sum(-2) == 0)
# Get the target length
target_length = input_ids.shape[1]
past_length = first_layer_past_key_value.shape[-1]
extended_attention_mask = torch.ones(
(attention_mask.shape[0], past_length),
dtype=attention_mask.dtype,
device=attention_mask.device,
)
# Filter out only the tokens that can be un-attended, this can happen
# if one uses Llava + Fused modules where the cache on the
# first iteration is already big enough, or if one passes custom cache
valid_indices = non_attended_tokens < extended_attention_mask.size(-1)
new_batch_index = batch_index[valid_indices]
new_non_attended_tokens = non_attended_tokens[valid_indices]
# Zero-out the places where we don't need to attend
extended_attention_mask[new_batch_index, new_non_attended_tokens] = 0
attention_mask = torch.cat((extended_attention_mask, attention_mask[:, -target_length:]), dim=1)
position_ids = torch.sum(attention_mask, dim=1).unsqueeze(-1) - 1
outputs = self.language_model(
attention_mask=attention_mask,
position_ids=position_ids,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
logits = outputs[0]
loss = None
if labels is not None:
# Shift so that tokens < n predict n
if attention_mask is not None:
shift_attention_mask = attention_mask[..., 1:]
shift_logits = logits[..., :-1, :][shift_attention_mask.to(logits.device) != 0].contiguous()
shift_labels = labels[..., 1:][shift_attention_mask.to(labels.device) != 0].contiguous()
else:
shift_logits = logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = nn.CrossEntropyLoss()
loss = loss_fct(
shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1).to(shift_logits.device)
)
if not return_dict:
output = (logits,) + outputs[1:]
return (loss,) + output if loss is not None else output
return LlavaCausalLMOutputWithPast(
loss=loss,
logits=logits,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def prepare_inputs_for_generation(
self, input_ids, past_key_values=None, inputs_embeds=None, pixel_values=None, attention_mask=None, **kwargs
):
if past_key_values is not None:
if isinstance(past_key_values, Cache):
cache_length = past_key_values.get_seq_length()
past_length = past_key_values.seen_tokens
else:
cache_length = past_length = past_key_values[0][0].shape[2]
# Keep only the unprocessed tokens:
# 1 - If the length of the attention_mask exceeds the length of input_ids, then we are in a setting where
# some of the inputs are exclusively passed as part of the cache (e.g. when passing input_embeds as
# input)
if attention_mask is not None and attention_mask.shape[1] > input_ids.shape[1]:
input_ids = input_ids[:, -(attention_mask.shape[1] - past_length) :]
# 2 - If the past_length is smaller than input_ids', then input_ids holds all input tokens. We can discard
# input_ids based on the past_length.
elif past_length < input_ids.shape[1]:
input_ids = input_ids[:, past_length:]
# 3 - Otherwise (past_length >= input_ids.shape[1]), let's assume input_ids only has unprocessed tokens.
elif self.config.image_token_index in input_ids:
input_ids = input_ids[:, input_ids.shape[1] - 1 :]
# If the cache has seen more tokens than it can hold, then the cache has a size limit. Let's discard the
# older attention values, as their corresponding values are not part of the input.
if cache_length < past_length and attention_mask is not None:
attention_mask = attention_mask[:, -(cache_length + input_ids.shape[1]) :]
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
# create position_ids on the fly for batch generation
position_ids = attention_mask.long().cumsum(-1) - 1
position_ids.masked_fill_(attention_mask == 0, 1)
if past_key_values:
position_ids = position_ids[:, -input_ids.shape[1] :]
# if `inputs_embeds` are passed, we only want to use them in the 1st generation step
if inputs_embeds is not None and past_key_values is None:
model_inputs = {"inputs_embeds": inputs_embeds}
else:
model_inputs = {"input_ids": input_ids}
model_inputs.update(
{
"position_ids": position_ids,
"past_key_values": past_key_values,
"use_cache": kwargs.get("use_cache"),
"attention_mask": attention_mask,
"pixel_values": pixel_values,
}
)
return model_inputs
def _reorder_cache(self, *args, **kwargs):
return self.language_model._reorder_cache(*args, **kwargs)
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|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/llava/__init__.py
|
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {
"configuration_llava": ["LLAVA_PRETRAINED_CONFIG_ARCHIVE_MAP", "LlavaConfig"],
"processing_llava": ["LlavaProcessor"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_llava"] = [
"LLAVA_PRETRAINED_MODEL_ARCHIVE_LIST",
"LlavaForConditionalGeneration",
"LlavaPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_llava import LLAVA_PRETRAINED_CONFIG_ARCHIVE_MAP, LlavaConfig
from .processing_llava import LlavaProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_llava import (
LLAVA_PRETRAINED_MODEL_ARCHIVE_LIST,
LlavaForConditionalGeneration,
LlavaPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/llava/convert_llava_weights_to_hf.py
|
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import torch
from huggingface_hub import hf_hub_download
from transformers import (
AddedToken,
AutoConfig,
AutoTokenizer,
CLIPImageProcessor,
LlavaConfig,
LlavaForConditionalGeneration,
LlavaProcessor,
)
EPILOG_TXT = """Example:
python transformers/src/transformers/models/llava/convert_llava_weights_to_hf.py --text_model_id lmsys/vicuna-7b-v1.5 --vision_model_id openai/clip-vit-large-patch14-336 --output_hub_path org/llava-v1.5-7b-conv --old_state_dict_id liuhaotian/llava-v1.5-7b
Example for creating the old state dict file with Python:
import torch
from llava.model.language_model.llava_llama import LlavaLlamaForCausalLM
# load model
kwargs = {"device_map": "auto", "torch_dtype": torch.float16}
model = LlavaLlamaForCausalLM.from_pretrained("liuhaotian/llava-v1.5-7b", low_cpu_mem_usage=True, **kwargs)
# load vision tower
model.get_vision_tower().load_model()
# Save state dict
torch.save(model.state_dict(), "tmp/hf_models/llava-v1.5-7b/model_state_dict.bin")
"""
KEYS_TO_MODIFY_MAPPING = {
"model.vision_tower.": "",
"model.mm_projector": "multi_modal_projector",
"model": "model.model",
"vision_model.model": "vision_model",
"lm_head": "language_model.lm_head",
"model.model": "language_model.model",
"multi_modal_projector.0": "multi_modal_projector.linear_1",
"multi_modal_projector.2": "multi_modal_projector.linear_2",
}
def convert_state_dict_to_hf(state_dict):
new_state_dict = {}
for key, value in state_dict.items():
if key.endswith(".inv_freq"):
continue
for key_to_modify, new_key in KEYS_TO_MODIFY_MAPPING.items():
if key_to_modify in key:
key = key.replace(key_to_modify, new_key)
new_state_dict[key] = value
return new_state_dict
def convert_llava_llama_to_hf(text_model_id, vision_model_id, output_hub_path, old_state_dict_id):
torch.set_default_dtype(torch.float16)
text_config = AutoConfig.from_pretrained(text_model_id)
tokenizer = AutoTokenizer.from_pretrained(text_model_id)
tokenizer.add_tokens(AddedToken("<image>", special=True, normalized=False), special_tokens=True)
tokenizer.add_special_tokens({"pad_token": "<pad>"})
image_processor = CLIPImageProcessor.from_pretrained(vision_model_id)
processor = LlavaProcessor(tokenizer=tokenizer, image_processor=image_processor)
config = LlavaConfig(text_config=text_config)
config.pad_token_id = 32001
with torch.device("meta"):
model = LlavaForConditionalGeneration(config)
# Pad to 64 for performance reasons
pad_shape = 64
state_dict_path = hf_hub_download(old_state_dict_id, "model_state_dict.bin")
state_dict = torch.load(state_dict_path, map_location="cpu")
state_dict = convert_state_dict_to_hf(state_dict)
model.load_state_dict(state_dict, strict=True, assign=True)
pre_expansion_embeddings = model.language_model.model.embed_tokens.weight.data
mu = torch.mean(pre_expansion_embeddings, dim=0).float()
n = pre_expansion_embeddings.size()[0]
sigma = ((pre_expansion_embeddings - mu).T @ (pre_expansion_embeddings - mu)) / n
dist = torch.distributions.multivariate_normal.MultivariateNormal(mu, covariance_matrix=1e-5 * sigma)
# We add an image token so we resize the model
model.resize_token_embeddings(config.text_config.vocab_size + 2, pad_shape)
model.language_model.model.embed_tokens.weight.data[32000:] = torch.stack(
tuple((dist.sample() for _ in range(model.language_model.model.embed_tokens.weight.data[32000:].shape[0]))),
dim=0,
)
model.language_model.lm_head.weight.data[32000:] = torch.stack(
tuple((dist.sample() for _ in range(model.language_model.lm_head.weight.data[32000:].shape[0]))),
dim=0,
)
model.push_to_hub(output_hub_path)
processor.push_to_hub(output_hub_path)
def main():
parser = argparse.ArgumentParser(
epilog=EPILOG_TXT,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
parser.add_argument(
"--text_model_id",
help="Hub location of the text model",
)
parser.add_argument(
"--vision_model_id",
help="Hub location of the vision model",
)
parser.add_argument(
"--output_hub_path",
help="Location on the hub of the converted model",
)
parser.add_argument(
"--old_state_dict_id",
help="Location on the hub of the raw state dict of the original model. The filename needs to be `model_state_dict.bin`",
)
args = parser.parse_args()
convert_llava_llama_to_hf(args.text_model_id, args.vision_model_id, args.output_hub_path, args.old_state_dict_id)
if __name__ == "__main__":
main()
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/llava/processing_llava.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for Llava.
"""
from typing import List, Optional, Union
from ...feature_extraction_utils import BatchFeature
from ...image_utils import ImageInput
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import PaddingStrategy, PreTokenizedInput, TextInput, TruncationStrategy
from ...utils import TensorType
class LlavaProcessor(ProcessorMixin):
r"""
Constructs a Llava processor which wraps a Llava image processor and a Llava tokenizer into a single processor.
[`LlavaProcessor`] offers all the functionalities of [`CLIPImageProcessor`] and [`LlamaTokenizerFast`]. See the
[`~LlavaProcessor.__call__`] and [`~LlavaProcessor.decode`] for more information.
Args:
image_processor ([`CLIPImageProcessor`], *optional*):
The image processor is a required input.
tokenizer ([`LlamaTokenizerFast`], *optional*):
The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "CLIPImageProcessor"
tokenizer_class = ("LlamaTokenizer", "LlamaTokenizerFast")
def __init__(self, image_processor=None, tokenizer=None):
super().__init__(image_processor, tokenizer)
def __call__(
self,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]] = None,
images: ImageInput = None,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length=None,
return_tensors: Optional[Union[str, TensorType]] = TensorType.PYTORCH,
) -> BatchFeature:
"""
Main method to prepare for the model one or several sequences(s) and image(s). This method forwards the `text`
and `kwargs` arguments to LlamaTokenizerFast's [`~LlamaTokenizerFast.__call__`] if `text` is not `None` to encode
the text. To prepare the image(s), this method forwards the `images` and `kwrags` arguments to
CLIPImageProcessor's [`~CLIPImageProcessor.__call__`] if `images` is not `None`. Please refer to the doctsring
of the above two methods for more information.
Args:
text (`str`, `List[str]`, `List[List[str]]`):
The sequence or batch of sequences to be encoded. Each sequence can be a string or a list of strings
(pretokenized string). If the sequences are provided as list of strings (pretokenized), you must set
`is_split_into_words=True` (to lift the ambiguity with a batch of sequences).
images (`PIL.Image.Image`, `np.ndarray`, `torch.Tensor`, `List[PIL.Image.Image]`, `List[np.ndarray]`, `List[torch.Tensor]`):
The image or batch of images to be prepared. Each image can be a PIL image, NumPy array or PyTorch
tensor. Both channels-first and channels-last formats are supported.
padding (`bool`, `str` or [`~utils.PaddingStrategy`], *optional*, defaults to `False`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding
index) among:
- `True` or `'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
- `'max_length'`: Pad to a maximum length specified with the argument `max_length` or to the maximum
acceptable input length for the model if that argument is not provided.
- `False` or `'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of different
lengths).
max_length (`int`, *optional*):
Maximum length of the returned list and optionally padding length (see above).
truncation (`bool`, *optional*):
Activates truncation to cut input sequences longer than `max_length` to `max_length`.
return_tensors (`str` or [`~utils.TensorType`], *optional*):
If set, will return tensors of a particular framework. Acceptable values are:
- `'tf'`: Return TensorFlow `tf.constant` objects.
- `'pt'`: Return PyTorch `torch.Tensor` objects.
- `'np'`: Return NumPy `np.ndarray` objects.
- `'jax'`: Return JAX `jnp.ndarray` objects.
Returns:
[`BatchFeature`]: A [`BatchFeature`] with the following fields:
- **input_ids** -- List of token ids to be fed to a model. Returned when `text` is not `None`.
- **attention_mask** -- List of indices specifying which tokens should be attended to by the model (when
`return_attention_mask=True` or if *"attention_mask"* is in `self.model_input_names` and if `text` is not
`None`).
- **pixel_values** -- Pixel values to be fed to a model. Returned when `images` is not `None`.
"""
if images is not None:
pixel_values = self.image_processor(images, return_tensors=return_tensors)["pixel_values"]
else:
pixel_values = None
text_inputs = self.tokenizer(
text, return_tensors=return_tensors, padding=padding, truncation=truncation, max_length=max_length
)
return BatchFeature(data={**text_inputs, "pixel_values": pixel_values})
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.batch_decode with CLIP->Llama
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to LlamaTokenizerFast's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.decode with CLIP->Llama
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to LlamaTokenizerFast's [`~PreTrainedTokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
# Copied from transformers.models.clip.processing_clip.CLIPProcessor.model_input_names
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/seggpt/modeling_seggpt.py
|
# coding=utf-8
# Copyright 2024 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch SegGpt model."""
import collections.abc
import math
from dataclasses import dataclass
from typing import Dict, List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import functional as F
from ...activations import ACT2FN
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_seggpt import SegGptConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "SegGptConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "BAAI/seggpt-vit-large"
_EXPECTED_OUTPUT_SHAPE = [3, 896, 448]
from ..deprecated._archive_maps import SEGGPT_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
class SegGptEncoderOutput(ModelOutput):
"""
Output type of [`SegGptEncoderOutput`].
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, patch_height, patch_width, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`Tuple[torch.FloatTensor]`, `optional`, returned when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape `(batch_size, patch_height, patch_width, hidden_size)`.
attentions (`Tuple[torch.FloatTensor]`, `optional`, returned when `config.output_attentions=True`):
Tuple of *torch.FloatTensor* (one for each layer) of shape
`(batch_size, num_heads, seq_len, seq_len)`.
intermediate_hidden_states (`Tuple[torch.FloatTensor]`, `optional`, returned when `config.intermediate_hidden_state_indices` is set):
Tuple of `torch.FloatTensor` of shape `(batch_size, patch_height, patch_width, hidden_size)`.
Each element in the Tuple corresponds to the output of the layer specified in `config.intermediate_hidden_state_indices`.
Additionaly, each feature passes through a LayerNorm.
"""
last_hidden_state: torch.FloatTensor
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
intermediate_hidden_states: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class SegGptImageSegmentationOutput(ModelOutput):
"""
Output type of [`SegGptImageSegmentationOutput`].
Args:
loss (`torch.FloatTensor`, `optional`, returned when `labels` is provided):
The loss value.
pred_masks (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
The predicted masks.
hidden_states (`Tuple[torch.FloatTensor]`, `optional`, returned when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape `(batch_size, patch_height, patch_width, hidden_size)`.
attentions (`Tuple[torch.FloatTensor]`, `optional`, returned when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape
`(batch_size, num_heads, seq_len, seq_len)`.
"""
loss: Optional[torch.FloatTensor] = None
pred_masks: Optional[torch.FloatTensor] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
# Copied from transformers.models.sam.modeling_sam.SamPatchEmbeddings with Sam->SegGpt
class SegGptPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values):
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
embeddings = self.projection(pixel_values).permute(0, 2, 3, 1)
return embeddings
class SegGptEmbeddings(nn.Module):
"""
Construct the embeddings from patch, position embeddings for input and prompt.
"""
def __init__(self, config: SegGptConfig) -> None:
super().__init__()
self.mask_token = nn.Parameter(torch.zeros(1, 1, 1, config.hidden_size))
self.segment_token_input = nn.Parameter(torch.zeros(1, 1, 1, config.hidden_size))
self.segment_token_prompt = nn.Parameter(torch.zeros(1, 1, 1, config.hidden_size))
# token for seg types
self.type_token_semantic = nn.Parameter(torch.zeros(1, 1, 1, config.hidden_size))
self.type_token_instance = nn.Parameter(torch.zeros(1, 1, 1, config.hidden_size))
self.patch_embeddings = SegGptPatchEmbeddings(config)
num_positions = (config.pretrain_image_size // config.patch_size) ** 2 + 1
self.position_embeddings = nn.Parameter(torch.randn(1, num_positions, config.hidden_size))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def interpolate_pos_encoding(self, height: int, width: int) -> torch.Tensor:
patch_pos_embed = self.position_embeddings[:, 1:]
num_patches = patch_pos_embed.shape[1]
pretrain_patch_size = int(math.sqrt(num_patches))
if pretrain_patch_size != height or pretrain_patch_size != width:
patch_pos_embed = F.interpolate(
patch_pos_embed.reshape(1, pretrain_patch_size, pretrain_patch_size, -1).permute(0, 3, 1, 2),
size=(height, width),
mode="bicubic",
align_corners=False,
)
return patch_pos_embed.permute(0, 2, 3, 1)
else:
return patch_pos_embed.reshape(1, height, width, -1)
def forward(
self,
pixel_values: torch.Tensor,
prompt_pixel_values: torch.Tensor,
bool_masked_pos: Optional[torch.BoolTensor] = None,
embedding_type: Optional[str] = None,
) -> torch.Tensor:
input_embeddings = self.patch_embeddings(pixel_values)
prompt_embeddings = self.patch_embeddings(prompt_pixel_values)
batch_size, patch_height, patch_width, _ = input_embeddings.shape
mask_token = self.mask_token.expand(batch_size, patch_height, patch_width, -1)
# replace the masked visual tokens by mask_token
w = bool_masked_pos.unsqueeze(-1).type_as(mask_token).reshape(-1, patch_height, patch_width, 1)
prompt_embeddings = prompt_embeddings * (1 - w) + mask_token * w
embedding_type = embedding_type if embedding_type is not None else "instance"
# add positional encoding to each token
pos_embed = self.interpolate_pos_encoding(patch_height, patch_width)
# add segment token
input_embeddings = input_embeddings + self.segment_token_input
prompt_embeddings = prompt_embeddings + self.segment_token_prompt
# add position embedding skipping CLS
input_embeddings = input_embeddings + pos_embed
prompt_embeddings = prompt_embeddings + pos_embed
# add type embedding to each token
if embedding_type == "semantic":
type_embedding = self.type_token_semantic
elif embedding_type == "instance":
type_embedding = self.type_token_instance
else:
raise ValueError(f"Embedding type should be either 'semantic' or 'instance', but got {embedding_type}")
input_embeddings = input_embeddings + type_embedding
prompt_embeddings = prompt_embeddings + type_embedding
embeddings = torch.cat((input_embeddings, prompt_embeddings), dim=0)
return embeddings
class SegGptAttention(nn.Module):
"""Multi-head Attention block with relative position embeddings."""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
input_size = (image_size[0] // config.patch_size, image_size[1] // config.patch_size)
head_dim = config.hidden_size // config.num_attention_heads
self.num_attention_heads = config.num_attention_heads
self.scale = head_dim**-0.5
self.qkv = nn.Linear(config.hidden_size, config.hidden_size * 3, bias=config.qkv_bias)
self.proj = nn.Linear(config.hidden_size, config.hidden_size)
self.use_relative_position_embeddings = config.use_relative_position_embeddings
if self.use_relative_position_embeddings:
if input_size is None:
raise ValueError("Input size must be provided if using relative positional encoding.")
# initialize relative positional embeddings
self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim))
self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim))
def get_rel_pos(self, q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor:
"""
Get relative positional embeddings according to the relative positions of
query and key sizes.
Args:
q_size (int):
size of the query.
k_size (int):
size of key k.
rel_pos (`torch.Tensor`):
relative position embeddings (L, channel).
Returns:
Extracted positional embeddings according to relative positions.
"""
max_rel_dist = int(2 * max(q_size, k_size) - 1)
# Interpolate rel pos.
rel_pos_resized = F.interpolate(
rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1),
size=max_rel_dist,
mode="linear",
)
rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0)
# Scale the coords with short length if shapes for q and k are different.
q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0)
k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0)
relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
return rel_pos_resized[relative_coords.long()]
def add_decomposed_rel_pos(
self,
attn: torch.Tensor,
query: torch.Tensor,
rel_pos_h: torch.Tensor,
rel_pos_w: torch.Tensor,
q_size: Tuple[int, int],
k_size: Tuple[int, int],
) -> torch.Tensor:
"""
Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py
Args:
attn (`torch.Tensor`):
attention map.
query (`torch.Tensor`):
query q in the attention layer with shape (batch_size, query_height * query_width, channel).
rel_pos_h (`torch.Tensor`):
relative position embeddings (Lh, channel) for height axis.
rel_pos_w (`torch.Tensor`):
relative position embeddings (Lw, channel) for width axis.
q_size (tuple):
spatial sequence size of query q with (query_height, query_width).
k_size (tuple):
spatial sequence size of key k with (key_height, key_width).
Returns:
attn (`torch.Tensor`):
attention map with added relative positional embeddings.
"""
query_height, query_width = q_size
key_height, key_width = k_size
relative_position_height = self.get_rel_pos(query_height, key_height, rel_pos_h)
relative_position_width = self.get_rel_pos(query_width, key_width, rel_pos_w)
batch_size, _, dim = query.shape
reshaped_query = query.reshape(batch_size, query_height, query_width, dim)
rel_h = torch.einsum("bhwc,hkc->bhwk", reshaped_query, relative_position_height)
rel_w = torch.einsum("bhwc,wkc->bhwk", reshaped_query, relative_position_width)
attn = attn.reshape(batch_size, query_height, query_width, key_height, key_width)
attn = attn + rel_h[:, :, :, :, None] + rel_w[:, :, :, None, :]
attn = attn.reshape(batch_size, query_height * query_width, key_height * key_width)
return attn
def forward(self, hidden_states: torch.Tensor, output_attentions=False) -> torch.Tensor:
batch_size, height, width, _ = hidden_states.shape
# qkv with shape (3, batch_size, nHead, height * width, channel)
qkv = (
self.qkv(hidden_states)
.reshape(batch_size, height * width, 3, self.num_attention_heads, -1)
.permute(2, 0, 3, 1, 4)
)
# q, k, v with shape (batch_size * nHead, height * width, channel)
query, key, value = qkv.reshape(3, batch_size * self.num_attention_heads, height * width, -1).unbind(0)
attn_weights = (query * self.scale) @ key.transpose(-2, -1)
if self.use_relative_position_embeddings:
attn_weights = self.add_decomposed_rel_pos(
attn_weights, query, self.rel_pos_h, self.rel_pos_w, (height, width), (height, width)
)
attn_weights = torch.nn.functional.softmax(attn_weights, dtype=torch.float32, dim=-1).to(query.dtype)
if output_attentions:
# this operation is a bit awkward, but it's required to
# make sure that attn_weights keeps its gradient.
# In order to do so, attn_weights have to reshaped
# twice and have to be reused in the following
attn_weights_reshaped = attn_weights.view(batch_size, self.num_attention_heads, height * width, -1)
attn_weights = attn_weights_reshaped.view(batch_size * self.num_attention_heads, height * width, -1)
else:
attn_weights_reshaped = None
attn_output = (attn_weights @ value).reshape(batch_size, self.num_attention_heads, height, width, -1)
attn_output = attn_output.permute(0, 2, 3, 1, 4).reshape(batch_size, height, width, -1)
attn_output = self.proj(attn_output)
return (attn_output, attn_weights_reshaped)
# Copied from transformers.models.sam.modeling_sam.SamMLPBlock with SamMLPBlock->SegGptMlp
class SegGptMlp(nn.Module):
def __init__(self, config):
super().__init__()
self.lin1 = nn.Linear(config.hidden_size, config.mlp_dim)
self.lin2 = nn.Linear(config.mlp_dim, config.hidden_size)
self.act = ACT2FN[config.hidden_act]
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.lin1(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.lin2(hidden_states)
return hidden_states
# Copied from transformers.models.beit.modeling_beit.drop_path
def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output
# Copied from transformers.models.beit.modeling_beit.BeitDropPath with Beit->SegGpt
class SegGptDropPath(nn.Module):
"""Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""
def __init__(self, drop_prob: Optional[float] = None) -> None:
super().__init__()
self.drop_prob = drop_prob
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
return drop_path(hidden_states, self.drop_prob, self.training)
def extra_repr(self) -> str:
return "p={}".format(self.drop_prob)
class SegGptLayer(nn.Module):
def __init__(self, config: SegGptConfig, drop_path_rate: float) -> None:
super().__init__()
self.attention = SegGptAttention(config)
self.mlp = SegGptMlp(config)
self.drop_path = SegGptDropPath(drop_path_rate) if drop_path_rate > 0.0 else nn.Identity()
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
ensemble_cond: int,
feature_ensemble: bool = False,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in SegGpt, layernorm is applied before self-attention
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if feature_ensemble and attention_output.shape[0] // 2 >= ensemble_cond:
prompt, inputs = attention_output.split(attention_output.shape[1] // 2, dim=1)
if ensemble_cond == 2:
num_prompts = attention_output.shape[0] // 2
inputs = inputs.reshape(2, num_prompts, -1)
inputs = inputs.mean(dim=1, keepdim=True).expand_as(inputs)
inputs = inputs.reshape(*prompt.shape)
else:
inputs = inputs.mean(dim=0, keepdim=True).expand_as(inputs)
attention_output = torch.cat([prompt, inputs], dim=1)
# first residual connection
hidden_states = self.drop_path(attention_output) + hidden_states
residual = hidden_states
hidden_states = self.layernorm_after(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = residual + self.drop_path(hidden_states)
outputs = (hidden_states,) + outputs
return outputs
class SegGptEncoder(nn.Module):
def __init__(self, config: SegGptConfig) -> None:
super().__init__()
self.config = config
dpr = [x.item() for x in torch.linspace(0, config.drop_path_rate, config.num_hidden_layers)]
self.layers = nn.ModuleList([SegGptLayer(config, dpr[i]) for i in range(config.num_hidden_layers)])
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
feature_ensemble: bool = False,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, SegGptEncoderOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
intermediate_hidden_states = []
for i, layer_module in enumerate(self.layers):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
# Condition to check if we have the appropriate number of prompts to ensemble
ensemble_cond = 2 if self.config.merge_index > i else 1
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
ensemble_cond,
feature_ensemble,
output_attentions,
)
else:
layer_outputs = layer_module(hidden_states, ensemble_cond, feature_ensemble, output_attentions)
hidden_states = layer_outputs[0]
if i == self.config.merge_index:
hidden_states = (
hidden_states[: hidden_states.shape[0] // 2] + hidden_states[hidden_states.shape[0] // 2 :]
) * 0.5
if i in self.config.intermediate_hidden_state_indices:
intermediate_hidden_states.append(self.layernorm(hidden_states))
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, all_hidden_states, all_self_attentions, intermediate_hidden_states]
if v is not None
)
return SegGptEncoderOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
intermediate_hidden_states=intermediate_hidden_states,
)
# Copied from transformers.models.convnext.modeling_convnext.ConvNextLayerNorm with ConvNext->SegGpt
class SegGptLayerNorm(nn.Module):
r"""LayerNorm that supports two data formats: channels_last (default) or channels_first.
The ordering of the dimensions in the inputs. channels_last corresponds to inputs with shape (batch_size, height,
width, channels) while channels_first corresponds to inputs with shape (batch_size, channels, height, width).
"""
def __init__(self, normalized_shape, eps=1e-6, data_format="channels_last"):
super().__init__()
self.weight = nn.Parameter(torch.ones(normalized_shape))
self.bias = nn.Parameter(torch.zeros(normalized_shape))
self.eps = eps
self.data_format = data_format
if self.data_format not in ["channels_last", "channels_first"]:
raise NotImplementedError(f"Unsupported data format: {self.data_format}")
self.normalized_shape = (normalized_shape,)
def forward(self, x: torch.Tensor) -> torch.Tensor:
if self.data_format == "channels_last":
x = torch.nn.functional.layer_norm(x, self.normalized_shape, self.weight, self.bias, self.eps)
elif self.data_format == "channels_first":
input_dtype = x.dtype
x = x.float()
u = x.mean(1, keepdim=True)
s = (x - u).pow(2).mean(1, keepdim=True)
x = (x - u) / torch.sqrt(s + self.eps)
x = x.to(dtype=input_dtype)
x = self.weight[:, None, None] * x + self.bias[:, None, None]
return x
class SegGptDecoderHead(nn.Module):
def __init__(self, config):
super().__init__()
self.conv = nn.Conv2d(
config.decoder_hidden_size,
config.decoder_hidden_size,
kernel_size=3,
padding=1,
)
self.layernorm = SegGptLayerNorm(
normalized_shape=config.decoder_hidden_size, eps=config.layer_norm_eps, data_format="channels_first"
)
self.act_fct = ACT2FN[config.hidden_act]
self.head = nn.Conv2d(config.decoder_hidden_size, 3, kernel_size=1, bias=True) # decoder to patch
def forward(self, hidden_states: torch.FloatTensor):
hidden_states = self.conv(hidden_states)
hidden_states = self.layernorm(hidden_states)
hidden_states = self.act_fct(hidden_states)
hidden_states = self.head(hidden_states)
return hidden_states
class SegGptDecoder(nn.Module):
def __init__(self, config):
super().__init__()
self.decoder_embed = nn.Linear(
config.hidden_size * len(config.intermediate_hidden_state_indices),
config.patch_size**2 * config.decoder_hidden_size,
bias=True,
)
self.decoder_pred = SegGptDecoderHead(config)
self.patch_size = config.patch_size
self.decoder_hidden_size = config.decoder_hidden_size
self.config = config
def _reshape_hidden_states(self, hidden_states: torch.FloatTensor) -> torch.FloatTensor:
batch_size, patch_height, patch_width, _ = hidden_states.shape
hidden_states = hidden_states.reshape(
batch_size, patch_height, patch_width, self.patch_size, self.patch_size, self.decoder_hidden_size
)
hidden_states = hidden_states.permute(0, 5, 1, 3, 2, 4)
hidden_states = hidden_states.reshape(
shape=(batch_size, -1, patch_height * self.patch_size, patch_width * self.patch_size)
)
return hidden_states
def forward(self, hidden_states: torch.FloatTensor):
hidden_states = self.decoder_embed(hidden_states)
hidden_states = self._reshape_hidden_states(hidden_states)
hidden_states = self.decoder_pred(hidden_states)
return hidden_states
class SegGptPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = SegGptConfig
base_model_prefix = "model"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
_no_split_modules = ["SegGptEmbeddings", "SegGptLayer"]
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
std = self.config.initializer_range
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Upcast the input in `fp32` and cast it back to desired `dtype` to avoid
# `trunc_normal_cpu` not implemented in `half` issues
module.weight.data = nn.init.trunc_normal_(module.weight.data.to(torch.float32), mean=0.0, std=std).to(
module.weight.dtype
)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, SegGptAttention):
module.rel_pos_h.data = nn.init.trunc_normal_(
module.rel_pos_h.data.to(torch.float32),
mean=0.0,
std=std,
).to(module.rel_pos_h.dtype)
module.rel_pos_w.data = nn.init.trunc_normal_(
module.rel_pos_w.data.to(torch.float32),
mean=0.0,
std=std,
).to(module.rel_pos_w.dtype)
elif isinstance(module, SegGptEmbeddings):
module.position_embeddings.data = nn.init.trunc_normal_(
module.position_embeddings.data.to(torch.float32),
mean=0.0,
std=std,
).to(module.position_embeddings.dtype)
torch.nn.init.normal_(module.mask_token, std=std)
torch.nn.init.normal_(module.segment_token_input, std=std)
torch.nn.init.normal_(module.segment_token_prompt, std=std)
torch.nn.init.normal_(module.type_token_semantic, std=std)
torch.nn.init.normal_(module.type_token_instance, std=std)
SEGGPT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`SegGptConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
SEGGPT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`SegGptImageProcessor.__call__`]
for details.
prompt_pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Prompt pixel values. Prompt pixel values can be obtained using [`AutoImageProcessor`]. See
[`SegGptImageProcessor.__call__`] for details.
prompt_masks (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Prompt mask. Prompt mask can be obtained using [`AutoImageProcessor`]. See [`SegGptImageProcessor.__call__`] for
details.
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`, *optional*):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
feature_ensemble (`bool`, *optional*):
Boolean indicating whether to use feature ensemble or not. If `True`, the model will use feature ensemble
if we have at least two prompts. If `False`, the model will not use feature ensemble. This argument should
be considered when doing few-shot inference on an input image i.e. more than one prompt for the same image.
embedding_type (`str`, *optional*):
Embedding type. Indicates whether the prompt is a semantic or instance embedding. Can be either
instance or semantic.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare SegGpt Model transformer outputting raw hidden-states without any specific head on top.",
SEGGPT_START_DOCSTRING,
)
class SegGptModel(SegGptPreTrainedModel):
def __init__(self, config: SegGptConfig):
super().__init__(config)
self.config = config
self.embeddings = SegGptEmbeddings(config)
self.encoder = SegGptEncoder(config)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> SegGptPatchEmbeddings:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune: Dict[int, List[int]]) -> None:
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(SEGGPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SegGptEncoderOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.Tensor,
prompt_pixel_values: torch.Tensor,
prompt_masks: torch.Tensor,
bool_masked_pos: Optional[torch.BoolTensor] = None,
feature_ensemble: Optional[bool] = None,
embedding_type: Optional[str] = None,
labels: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SegGptEncoderOutput]:
r"""
labels (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`, `optional`):
Ground truth mask for input images.
Returns:
Examples:
```python
>>> from transformers import SegGptImageProcessor, SegGptModel
>>> from PIL import Image
>>> import requests
>>> image_input_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_2.jpg"
>>> image_prompt_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1.jpg"
>>> mask_prompt_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1_target.png"
>>> image_input = Image.open(requests.get(image_input_url, stream=True).raw)
>>> image_prompt = Image.open(requests.get(image_prompt_url, stream=True).raw)
>>> mask_prompt = Image.open(requests.get(mask_prompt_url, stream=True).raw).convert("L")
>>> checkpoint = "BAAI/seggpt-vit-large"
>>> model = SegGptModel.from_pretrained(checkpoint)
>>> image_processor = SegGptImageProcessor.from_pretrained(checkpoint)
>>> inputs = image_processor(images=image_input, prompt_images=image_prompt, prompt_masks=mask_prompt, return_tensors="pt")
>>> outputs = model(**inputs)
>>> list(outputs.last_hidden_state.shape)
[1, 56, 28, 1024]
```
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
feature_ensemble = feature_ensemble if feature_ensemble is not None else False
expected_dtype = self.embeddings.patch_embeddings.projection.weight.dtype
pixel_values = pixel_values.to(expected_dtype)
prompt_pixel_values = prompt_pixel_values.to(expected_dtype)
# Prepare inputs
pixel_values = torch.cat((prompt_pixel_values, pixel_values), dim=2)
prompt_pixel_values = (
torch.cat((prompt_masks, prompt_masks), dim=2)
if labels is None
else torch.cat((prompt_masks, labels), dim=2)
)
if bool_masked_pos is None and labels is not None:
logger.warning_once(
"Labels were provided, but bool_masked_pos were not. It will be set to default value. If you're training the model, make sure to provide a bool_masked_pos."
)
# We concat on height axis so SegGPT can handle as a single image, hence we need to mask the portion
# of the mask prompt pixels that will be destinated to the prediction as they don't add any information.
# This is only the case for inference. In training, the model concat of prompt mask and label is masked
# and reconstructed together (In-Context Painting).
if bool_masked_pos is None:
num_patches = self.embeddings.patch_embeddings.num_patches
bool_masked_pos = torch.zeros(num_patches, dtype=torch.bool).to(pixel_values.device)
bool_masked_pos[num_patches // 2 :] = 1
bool_masked_pos = bool_masked_pos.unsqueeze(0)
embedding_output = self.embeddings(
pixel_values, prompt_pixel_values, embedding_type=embedding_type, bool_masked_pos=bool_masked_pos
)
encoder_outputs = self.encoder(
embedding_output,
feature_ensemble=feature_ensemble,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
return encoder_outputs
def patchify(tensor: torch.Tensor, patch_size: int) -> torch.Tensor:
batch_size, num_channels, height, width = tensor.shape
patch_height = height // patch_size
patch_width = width // patch_size
tensor = tensor.reshape(shape=(batch_size, num_channels, patch_height, patch_size, patch_width, patch_size))
tensor = tensor.permute(0, 2, 4, 3, 5, 1)
tensor = tensor.reshape(shape=(batch_size, patch_height * patch_width, patch_size**2 * 3))
return tensor
def unpatchify(tensor: torch.Tensor, patch_height: int, patch_width: int) -> torch.Tensor:
batch_size = tensor.shape[0]
patch_size = int((tensor.shape[-1] / 3) ** 0.5)
if patch_height * patch_width != tensor.shape[1]:
raise ValueError(
f"Number of patches {tensor.shape[1]} does not match patch height ({patch_height}) and width ({patch_width})."
)
tensor = tensor.reshape(shape=(batch_size, patch_height, patch_width, patch_size, patch_size, 3))
tensor = tensor.permute(0, 5, 1, 3, 2, 4)
tensor = tensor.reshape(shape=(batch_size, 3, patch_height * patch_size, patch_width * patch_size))
return tensor
class SegGptLoss(nn.Module):
def __init__(self, config):
super().__init__()
self.beta = config.beta
self.patch_size = config.patch_size
def forward(
self,
prompt_masks: torch.FloatTensor,
pred_masks: torch.FloatTensor,
labels: torch.FloatTensor,
bool_masked_pos: torch.BoolTensor,
):
"""Computes the L1 loss between the predicted masks and the ground truth masks.
Args:
prompt_masks (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values from mask prompt.
pred_masks (`torch.FloatTensor` of shape `(batch_size, num_channels, 2*height, width)`):
Predicted masks.
labels (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Ground truth mask for input images.
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
Returns:
`torch.FloatTensor`: The mean L1 loss between the predicted masks and the ground truth masks.
"""
ground_truth = torch.cat((prompt_masks, labels), dim=2)
mask = bool_masked_pos[:, :, None].repeat(1, 1, self.patch_size**2 * 3)
mask = unpatchify(mask, ground_truth.shape[2] // self.patch_size, ground_truth.shape[3] // self.patch_size)
loss = F.smooth_l1_loss(pred_masks, ground_truth, reduction="none", beta=self.beta)
loss = (loss * mask).sum() / mask.sum() # mean loss on removed patches
return loss
@add_start_docstrings(
"SegGpt model with a decoder on top for one-shot image segmentation.",
SEGGPT_START_DOCSTRING,
)
class SegGptForImageSegmentation(SegGptPreTrainedModel):
def __init__(self, config: SegGptConfig):
super().__init__(config)
self.config = config
self.model = SegGptModel(config)
self.decoder = SegGptDecoder(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(SEGGPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SegGptImageSegmentationOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.Tensor,
prompt_pixel_values: torch.Tensor,
prompt_masks: torch.Tensor,
bool_masked_pos: Optional[torch.BoolTensor] = None,
feature_ensemble: Optional[bool] = None,
embedding_type: Optional[str] = None,
labels: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SegGptImageSegmentationOutput]:
r"""
labels (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`, `optional`):
Ground truth mask for input images.
Returns:
Examples:
```python
>>> from transformers import SegGptImageProcessor, SegGptForImageSegmentation
>>> from PIL import Image
>>> import requests
>>> image_input_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_2.jpg"
>>> image_prompt_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1.jpg"
>>> mask_prompt_url = "https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1_target.png"
>>> image_input = Image.open(requests.get(image_input_url, stream=True).raw)
>>> image_prompt = Image.open(requests.get(image_prompt_url, stream=True).raw)
>>> mask_prompt = Image.open(requests.get(mask_prompt_url, stream=True).raw).convert("L")
>>> checkpoint = "BAAI/seggpt-vit-large"
>>> model = SegGptForImageSegmentation.from_pretrained(checkpoint)
>>> image_processor = SegGptImageProcessor.from_pretrained(checkpoint)
>>> inputs = image_processor(images=image_input, prompt_images=image_prompt, prompt_masks=mask_prompt, return_tensors="pt")
>>> outputs = model(**inputs)
>>> result = image_processor.post_process_semantic_segmentation(outputs, target_sizes=[image_input.size[::-1]])[0]
>>> print(list(result.shape))
[170, 297]
```
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if bool_masked_pos is None:
num_patches = self.model.embeddings.patch_embeddings.num_patches
bool_masked_pos = torch.zeros(num_patches, dtype=torch.bool).to(pixel_values.device)
bool_masked_pos[num_patches // 2 :] = 1
bool_masked_pos = bool_masked_pos.unsqueeze(0)
outputs = self.model(
pixel_values=pixel_values,
prompt_pixel_values=prompt_pixel_values,
prompt_masks=prompt_masks,
bool_masked_pos=bool_masked_pos,
feature_ensemble=feature_ensemble,
embedding_type=embedding_type,
labels=labels,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
intermediate_hidden_states = outputs.intermediate_hidden_states if return_dict else outputs[-1]
intermediate_hidden_states = torch.cat(intermediate_hidden_states, dim=-1)
pred_masks = self.decoder(intermediate_hidden_states)
loss = None
if labels is not None:
loss_fn = SegGptLoss(self.config)
loss = loss_fn(prompt_masks, pred_masks, labels, bool_masked_pos)
if not return_dict:
output = (pred_masks,)
if output_hidden_states:
output = output + (outputs[1],)
if output_attentions:
idx = 2 if output_hidden_states else 1
output = output + (outputs[idx],)
if loss is not None:
output = (loss,) + output
return output
return SegGptImageSegmentationOutput(
loss=loss,
pred_masks=pred_masks,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/seggpt/__init__.py
|
# Copyright 2024 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available, is_vision_available
_import_structure = {
"configuration_seggpt": ["SEGGPT_PRETRAINED_CONFIG_ARCHIVE_MAP", "SegGptConfig", "SegGptOnnxConfig"]
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_seggpt"] = [
"SEGGPT_PRETRAINED_MODEL_ARCHIVE_LIST",
"SegGptModel",
"SegGptPreTrainedModel",
"SegGptForImageSegmentation",
]
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_seggpt"] = ["SegGptImageProcessor"]
if TYPE_CHECKING:
from .configuration_seggpt import SEGGPT_PRETRAINED_CONFIG_ARCHIVE_MAP, SegGptConfig, SegGptOnnxConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_seggpt import (
SEGGPT_PRETRAINED_MODEL_ARCHIVE_LIST,
SegGptForImageSegmentation,
SegGptModel,
SegGptPreTrainedModel,
)
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_seggpt import SegGptImageProcessor
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/seggpt/image_processing_seggpt.py
|
# coding=utf-8
# Copyright 2024 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for SegGPT."""
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import resize, to_channel_dimension_format
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
)
from ...utils import TensorType, is_torch_available, is_vision_available, logging, requires_backends
if is_torch_available():
import torch
if is_vision_available():
pass
logger = logging.get_logger(__name__)
# See https://arxiv.org/pdf/2212.02499.pdf at 3.1 Redefining Output Spaces as "Images" - Semantic Segmentation from PAINTER paper
# Taken from https://github.com/Abdullah-Meda/Painter/blob/main/Painter/data/coco_semseg/gen_color_coco_panoptic_segm.py#L31
def build_palette(num_labels: int) -> List[Tuple[int, int]]:
base = int(num_labels ** (1 / 3)) + 1
margin = 256 // base
# we assume that class_idx 0 is the background which is mapped to black
color_list = [(0, 0, 0)]
for location in range(num_labels):
num_seq_r = location // base**2
num_seq_g = (location % base**2) // base
num_seq_b = location % base
R = 255 - num_seq_r * margin
G = 255 - num_seq_g * margin
B = 255 - num_seq_b * margin
color_list.append((R, G, B))
return color_list
def mask_to_rgb(
mask: np.ndarray, palette: Optional[List[Tuple[int, int]]] = None, data_format: Optional[ChannelDimension] = None
) -> np.ndarray:
data_format = data_format if data_format is not None else ChannelDimension.FIRST
if palette is not None:
height, width = mask.shape
rgb_mask = np.zeros((3, height, width), dtype=np.uint8)
classes_in_mask = np.unique(mask)
for class_idx in classes_in_mask:
rgb_value = palette[class_idx]
class_mask = (mask == class_idx).astype(np.uint8)
class_mask = np.expand_dims(class_mask, axis=-1)
class_rgb_mask = class_mask * np.array(rgb_value)
class_rgb_mask = np.moveaxis(class_rgb_mask, -1, 0)
rgb_mask += class_rgb_mask.astype(np.uint8)
rgb_mask = np.clip(rgb_mask, 0, 255).astype(np.uint8)
else:
rgb_mask = np.repeat(mask[None, ...], 3, axis=0)
return to_channel_dimension_format(rgb_mask, data_format)
class SegGptImageProcessor(BaseImageProcessor):
r"""
Constructs a SegGpt image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `(size["height"],
size["width"])`. Can be overridden by the `do_resize` parameter in the `preprocess` method.
size (`dict`, *optional*, defaults to `{"height": 448, "width": 448}`):
Size of the output image after resizing. Can be overridden by the `size` parameter in the `preprocess`
method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BICUBIC`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
do_convert_rgb (`bool`, *optional*, defaults to `True`):
Whether to convert the prompt mask to RGB format. Can be overridden by the `do_convert_rgb` parameter in the
`preprocess` method.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: bool = True,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 448, "width": 448}
size = get_size_dict(size)
self.do_resize = do_resize
self.do_rescale = do_rescale
self.do_normalize = do_normalize
self.size = size
self.resample = resample
self.rescale_factor = rescale_factor
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
self.do_convert_rgb = do_convert_rgb
def get_palette(self, num_labels: int) -> List[Tuple[int, int]]:
"""Build a palette to map the prompt mask from a single channel to a 3 channel RGB.
Args:
num_labels (`int`):
Number of classes in the segmentation task (excluding the background).
Returns:
`List[Tuple[int, int]]`: Palette to map the prompt mask from a single channel to a 3 channel RGB.
"""
return build_palette(num_labels)
def mask_to_rgb(
self,
image: np.ndarray,
palette: Optional[List[Tuple[int, int]]] = None,
data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
"""Converts a segmentation map to RGB format.
Args:
image (`np.ndarray`):
Segmentation map with dimensions (height, width) where pixel values represent the class index.
palette (`List[Tuple[int, int]]`, *optional*, defaults to `None`):
Palette to use to convert the mask to RGB format. If unset, the mask is duplicated across the channel
dimension.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The mask in RGB format.
"""
return mask_to_rgb(image, palette=palette, data_format=data_format)
# Copied from transformers.models.vit.image_processing_vit.ViTImageProcessor.resize with PILImageResampling.BILINEAR->PILImageResampling.BICUBIC
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary in the format `{"height": int, "width": int}` specifying the size of the output image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BICUBIC`.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
Returns:
`np.ndarray`: The resized image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The `size` dictionary must contain the keys `height` and `width`. Got {size.keys()}")
output_size = (size["height"], size["width"])
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def _preprocess_step(
self,
images: ImageInput,
do_resize: Optional[bool] = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
data_format: Union[str, ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
do_convert_rgb: Optional[bool] = None,
num_labels: Optional[int] = None,
**kwargs,
):
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to _preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Dictionary in the format `{"height": h, "width": w}` specifying the size of the output image after
resizing.
resample (`PILImageResampling` filter, *optional*, defaults to `self.resample`):
`PILImageResampling` filter to use if resizing the image e.g. `PILImageResampling.BICUBIC`. Only has
an effect if `do_resize` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to use if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to use if `do_normalize` is set to `True`.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
do_convert_rgb (`bool`, *optional*, defaults to `self.do_convert_rgb`):
Whether to convert the prompt mask to RGB format. If `num_labels` is specified, a palette will be built
to map the prompt mask from a single channel to a 3 channel RGB. If unset, the prompt mask is duplicated
across the channel dimension. Must be set to `False` if the prompt mask is already in RGB format.
num_labels: (`int`, *optional*):
Number of classes in the segmentation task (excluding the background). If specified, a palette will be
built, assuming that class_idx 0 is the background, to map the prompt mask from a single class_idx
channel to a 3 channel RGB. Not specifying this will result in the prompt mask either being passed
through as is if it is already in RGB format or being duplicated across the channel dimension.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
do_convert_rgb = do_convert_rgb if do_convert_rgb is not None else self.do_convert_rgb
resample = resample if resample is not None else self.resample
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
size = size if size is not None else self.size
size_dict = get_size_dict(size)
# If segmentation map is passed we expect 2D images
images = make_list_of_images(images, expected_ndims=2 if do_convert_rgb else 3)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if do_resize and size is None:
raise ValueError("Size must be specified if do_resize is True.")
if do_rescale and rescale_factor is None:
raise ValueError("Rescale factor must be specified if do_rescale is True.")
if do_normalize and (image_mean is None or image_std is None):
raise ValueError("Image mean and std must be specified if do_normalize is True.")
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None and not do_convert_rgb:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_convert_rgb:
palette = self.get_palette(num_labels) if num_labels is not None else None
# Since this is the input for the next transformations its format should be the same as the input_data_format
images = [
self.mask_to_rgb(image=image, palette=palette, data_format=ChannelDimension.FIRST) for image in images
]
input_data_format = ChannelDimension.FIRST
if do_resize:
images = [
self.resize(image=image, size=size_dict, resample=resample, input_data_format=input_data_format)
for image in images
]
if do_rescale:
images = [
self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
for image in images
]
if do_normalize:
images = [
self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
return images
def preprocess(
self,
images: Optional[ImageInput] = None,
prompt_images: Optional[ImageInput] = None,
prompt_masks: Optional[ImageInput] = None,
do_resize: Optional[bool] = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: Optional[bool] = None,
num_labels: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Union[str, ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to _preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
prompt_images (`ImageInput`):
Prompt image to _preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
prompt_masks (`ImageInput`):
Prompt mask from prompt image to _preprocess that specify prompt_masks value in the preprocessed output.
Can either be in the format of segmentation maps (no channels) or RGB images. If in the format of
RGB images, `do_convert_rgb` should be set to `False`. If in the format of segmentation maps, `num_labels`
specifying `num_labels` is recommended to build a palette to map the prompt mask from a single channel to
a 3 channel RGB. If `num_labels` is not specified, the prompt mask will be duplicated across the channel
dimension.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Dictionary in the format `{"height": h, "width": w}` specifying the size of the output image after
resizing.
resample (`PILImageResampling` filter, *optional*, defaults to `self.resample`):
`PILImageResampling` filter to use if resizing the image e.g. `PILImageResampling.BICUBIC`. Only has
an effect if `do_resize` is set to `True`. Doesn't apply to prompt mask as it is resized using nearest.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to use if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to use if `do_normalize` is set to `True`.
do_convert_rgb (`bool`, *optional*, defaults to `self.do_convert_rgb`):
Whether to convert the prompt mask to RGB format. If `num_labels` is specified, a palette will be built
to map the prompt mask from a single channel to a 3 channel RGB. If unset, the prompt mask is duplicated
across the channel dimension. Must be set to `False` if the prompt mask is already in RGB format.
num_labels: (`int`, *optional*):
Number of classes in the segmentation task (excluding the background). If specified, a palette will be
built, assuming that class_idx 0 is the background, to map the prompt mask from a plain segmentation map
with no channels to a 3 channel RGB. Not specifying this will result in the prompt mask either being passed
through as is if it is already in RGB format (if `do_convert_rgb` is false) or being duplicated
across the channel dimension.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
if all(v is None for v in [images, prompt_images, prompt_masks]):
raise ValueError("At least one of images, prompt_images, prompt_masks must be specified.")
data = {}
if images is not None:
images = self._preprocess_step(
images,
is_mask=False,
do_resize=do_resize,
size=size,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_convert_rgb=False,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
data["pixel_values"] = images
if prompt_images is not None:
prompt_images = self._preprocess_step(
prompt_images,
is_mask=False,
do_resize=do_resize,
size=size,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_convert_rgb=False,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
data["prompt_pixel_values"] = prompt_images
if prompt_masks is not None:
prompt_masks = self._preprocess_step(
prompt_masks,
do_resize=do_resize,
size=size,
resample=PILImageResampling.NEAREST,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_convert_rgb=do_convert_rgb,
num_labels=num_labels,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
data["prompt_masks"] = prompt_masks
return BatchFeature(data=data, tensor_type=return_tensors)
def post_process_semantic_segmentation(
self, outputs, target_sizes: Optional[List[Tuple[int, int]]] = None, num_labels: Optional[int] = None
):
"""
Converts the output of [`SegGptImageSegmentationOutput`] into segmentation maps. Only supports
PyTorch.
Args:
outputs ([`SegGptImageSegmentationOutput`]):
Raw outputs of the model.
target_sizes (`List[Tuple[int, int]]`, *optional*):
List of length (batch_size), where each list item (`Tuple[int, int]`) corresponds to the requested
final size (height, width) of each prediction. If left to None, predictions will not be resized.
num_labels (`int`, *optional*):
Number of classes in the segmentation task (excluding the background). If specified, a palette will be
built, assuming that class_idx 0 is the background, to map prediction masks from RGB values to class
indices. This value should be the same used when preprocessing inputs.
Returns:
semantic_segmentation: `List[torch.Tensor]` of length `batch_size`, where each item is a semantic
segmentation map of shape (height, width) corresponding to the target_sizes entry (if `target_sizes` is
specified). Each entry of each `torch.Tensor` correspond to a semantic class id.
"""
requires_backends(self, ["torch"])
# batch_size x num_channels x 2*height x width
masks = outputs.pred_masks
# Predicted mask and prompt are concatenated in the height dimension
# batch_size x num_channels x height x width
masks = masks[:, :, masks.shape[2] // 2 :, :]
# To unnormalize we need to permute to channel last
# batch_size x height x width x num_channels
std = torch.tensor(self.image_std).to(masks.device)
mean = torch.tensor(self.image_mean).to(masks.device)
masks = masks.permute(0, 2, 3, 1) * std + mean
# batch_size x num_channels x height x width
masks = masks.permute(0, 3, 1, 2)
# Clip to match with palette if specified
masks = torch.clip(masks * 255, 0, 255)
semantic_segmentation = []
palette_tensor = None
palette = self.get_palette(num_labels) if num_labels is not None else None
if palette is not None:
palette_tensor = torch.tensor(palette).float().to(masks.device)
_, num_channels, _, _ = masks.shape
palette_tensor = palette_tensor.view(1, 1, num_labels + 1, num_channels)
for idx, mask in enumerate(masks):
if target_sizes is not None:
mask = torch.nn.functional.interpolate(
mask.unsqueeze(0),
size=target_sizes[idx],
mode="nearest",
)[0]
if num_labels is not None:
channels, height, width = mask.shape
dist = mask.permute(1, 2, 0).view(height, width, 1, channels)
dist = dist - palette_tensor
dist = torch.pow(dist, 2)
dist = torch.sum(dist, dim=-1)
pred = dist.argmin(dim=-1)
else:
# If no palette is specified SegGpt will try to paint using the mask class idx as RGB
pred = mask.mean(dim=0).int()
semantic_segmentation.append(pred)
return semantic_segmentation
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/seggpt/configuration_seggpt.py
|
# coding=utf-8
# Copyright 2024 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" SegGpt model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import SEGGPT_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class SegGptConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`SegGptModel`]. It is used to instantiate a SegGPT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the SegGPT
[BAAI/seggpt-vit-large](https://huggingface.co/BAAI/seggpt-vit-large) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 1024):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 24):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 16):
Number of attention heads for each attention layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
image_size (`List[int]`, *optional*, defaults to `[896, 448]`):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
mlp_dim (`int`, *optional*):
The dimensionality of the MLP layer in the Transformer encoder. If unset, defaults to
`hidden_size` * 4.
drop_path_rate (`float`, *optional*, defaults to 0.1):
The drop path rate for the dropout layers.
pretrain_image_size (`int`, *optional*, defaults to 224):
The pretrained size of the absolute position embeddings.
decoder_hidden_size (`int`, *optional*, defaults to 64):
Hidden size for decoder.
use_relative_position_embeddings (`bool`, *optional*, defaults to `True`):
Whether to use relative position embeddings in the attention layers.
merge_index (`int`, *optional*, defaults to 2):
The index of the encoder layer to merge the embeddings.
intermediate_hidden_state_indices (`List[int]`, *optional*, defaults to `[5, 11, 17, 23]`):
The indices of the encoder layers which we store as features for the decoder.
beta (`float`, *optional*, defaults to 0.01):
Regularization factor for SegGptLoss (smooth-l1 loss).
Example:
```python
>>> from transformers import SegGptConfig, SegGptModel
>>> # Initializing a SegGPT seggpt-vit-large style configuration
>>> configuration = SegGptConfig()
>>> # Initializing a model (with random weights) from the seggpt-vit-large style configuration
>>> model = SegGptModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "seggpt"
def __init__(
self,
hidden_size=1024,
num_hidden_layers=24,
num_attention_heads=16,
hidden_act="gelu",
hidden_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-6,
image_size=[896, 448],
patch_size=16,
num_channels=3,
qkv_bias=True,
mlp_dim=None,
drop_path_rate=0.1,
pretrain_image_size=224,
decoder_hidden_size=64,
use_relative_position_embeddings=True,
merge_index=2,
intermediate_hidden_state_indices=[5, 11, 17, 23],
beta=0.01,
**kwargs,
):
super().__init__(**kwargs)
if merge_index > min(intermediate_hidden_state_indices):
raise ValueError(
f"Merge index must be less than the minimum encoder output index, but got {merge_index=} and {intermediate_hidden_state_indices=}"
)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
self.drop_path_rate = drop_path_rate
self.pretrain_image_size = pretrain_image_size
self.decoder_hidden_size = decoder_hidden_size
self.use_relative_position_embeddings = use_relative_position_embeddings
self.merge_index = merge_index
self.intermediate_hidden_state_indices = intermediate_hidden_state_indices
self.beta = beta
self.mlp_dim = int(hidden_size * 4) if mlp_dim is None else mlp_dim
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/seggpt/convert_seggpt_to_hf.py
|
# coding=utf-8
# Copyright 2024 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert SegGPT checkpoints from the original repository.
URL: https://github.com/baaivision/Painter/tree/main/SegGPT
"""
import argparse
import requests
import torch
from PIL import Image
from transformers import SegGptConfig, SegGptForImageSegmentation, SegGptImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config):
rename_keys = []
# fmt: off
# rename embedding and its parameters
rename_keys.append(("patch_embed.proj.weight", "model.embeddings.patch_embeddings.projection.weight"))
rename_keys.append(("patch_embed.proj.bias", "model.embeddings.patch_embeddings.projection.bias"))
rename_keys.append(("mask_token", "model.embeddings.mask_token"))
rename_keys.append(("segment_token_x", "model.embeddings.segment_token_input"))
rename_keys.append(("segment_token_y", "model.embeddings.segment_token_prompt"))
rename_keys.append(("type_token_cls", "model.embeddings.type_token_semantic"))
rename_keys.append(("type_token_ins", "model.embeddings.type_token_instance"))
rename_keys.append(("pos_embed", "model.embeddings.position_embeddings"))
# rename decoder and other
rename_keys.append(("norm.weight", "model.encoder.layernorm.weight"))
rename_keys.append(("norm.bias", "model.encoder.layernorm.bias"))
rename_keys.append(("decoder_embed.weight", "decoder.decoder_embed.weight"))
rename_keys.append(("decoder_embed.bias", "decoder.decoder_embed.bias"))
rename_keys.append(("decoder_pred.0.weight", "decoder.decoder_pred.conv.weight"))
rename_keys.append(("decoder_pred.0.bias", "decoder.decoder_pred.conv.bias"))
rename_keys.append(("decoder_pred.1.weight", "decoder.decoder_pred.layernorm.weight"))
rename_keys.append(("decoder_pred.1.bias", "decoder.decoder_pred.layernorm.bias"))
rename_keys.append(("decoder_pred.3.weight", "decoder.decoder_pred.head.weight"))
rename_keys.append(("decoder_pred.3.bias", "decoder.decoder_pred.head.bias"))
# rename blocks
for i in range(config.num_hidden_layers):
rename_keys.append((f"blocks.{i}.attn.qkv.weight", f"model.encoder.layers.{i}.attention.qkv.weight"))
rename_keys.append((f"blocks.{i}.attn.qkv.bias", f"model.encoder.layers.{i}.attention.qkv.bias"))
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"model.encoder.layers.{i}.attention.proj.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"model.encoder.layers.{i}.attention.proj.bias"))
rename_keys.append((f"blocks.{i}.attn.rel_pos_h", f"model.encoder.layers.{i}.attention.rel_pos_h"))
rename_keys.append((f"blocks.{i}.attn.rel_pos_w", f"model.encoder.layers.{i}.attention.rel_pos_w"))
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"model.encoder.layers.{i}.mlp.lin1.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"model.encoder.layers.{i}.mlp.lin1.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"model.encoder.layers.{i}.mlp.lin2.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"model.encoder.layers.{i}.mlp.lin2.bias"))
rename_keys.append((f"blocks.{i}.norm1.weight", f"model.encoder.layers.{i}.layernorm_before.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"model.encoder.layers.{i}.layernorm_before.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"model.encoder.layers.{i}.layernorm_after.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"model.encoder.layers.{i}.layernorm_after.bias"))
# fmt: on
return rename_keys
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
# We will verify our results on spongebob images
def prepare_input():
image_input_url = (
"https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_2.jpg"
)
image_prompt_url = (
"https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1.jpg"
)
mask_prompt_url = (
"https://raw.githubusercontent.com/baaivision/Painter/main/SegGPT/SegGPT_inference/examples/hmbb_1_target.png"
)
image_input = Image.open(requests.get(image_input_url, stream=True).raw)
image_prompt = Image.open(requests.get(image_prompt_url, stream=True).raw)
mask_prompt = Image.open(requests.get(mask_prompt_url, stream=True).raw)
return image_input, image_prompt, mask_prompt
@torch.no_grad()
def convert_seggpt_checkpoint(args):
model_name = args.model_name
pytorch_dump_folder_path = args.pytorch_dump_folder_path
verify_logits = args.verify_logits
push_to_hub = args.push_to_hub
# Define default GroundingDINO configuation
config = SegGptConfig()
# Load original checkpoint
checkpoint_url = "https://huggingface.co/BAAI/SegGpt/blob/main/seggpt_vit_large.pth"
original_state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")["model"]
# # Rename keys
new_state_dict = original_state_dict.copy()
rename_keys = create_rename_keys(config)
for src, dest in rename_keys:
rename_key(new_state_dict, src, dest)
# Load HF model
model = SegGptForImageSegmentation(config)
model.eval()
missing_keys, unexpected_keys = model.load_state_dict(new_state_dict, strict=False)
print("Missing keys:", missing_keys)
print("Unexpected keys:", unexpected_keys)
input_img, prompt_img, prompt_mask = prepare_input()
image_processor = SegGptImageProcessor()
inputs = image_processor(images=input_img, prompt_images=prompt_img, prompt_masks=prompt_mask, return_tensors="pt")
expected_prompt_pixel_values = torch.tensor(
[
[[-0.6965, -0.6965, -0.6965], [-0.6965, -0.6965, -0.6965], [-0.6965, -0.6965, -0.6965]],
[[1.6583, 1.6583, 1.6583], [1.6583, 1.6583, 1.6583], [1.6583, 1.6583, 1.6583]],
[[2.3088, 2.3088, 2.3088], [2.3088, 2.3088, 2.3088], [2.3088, 2.3088, 2.3088]],
]
)
expected_pixel_values = torch.tensor(
[
[[1.6324, 1.6153, 1.5810], [1.6153, 1.5982, 1.5810], [1.5810, 1.5639, 1.5639]],
[[1.2731, 1.2556, 1.2206], [1.2556, 1.2381, 1.2031], [1.2206, 1.2031, 1.1681]],
[[1.6465, 1.6465, 1.6465], [1.6465, 1.6465, 1.6465], [1.6291, 1.6291, 1.6291]],
]
)
expected_prompt_masks = torch.tensor(
[
[[-2.1179, -2.1179, -2.1179], [-2.1179, -2.1179, -2.1179], [-2.1179, -2.1179, -2.1179]],
[[-2.0357, -2.0357, -2.0357], [-2.0357, -2.0357, -2.0357], [-2.0357, -2.0357, -2.0357]],
[[-1.8044, -1.8044, -1.8044], [-1.8044, -1.8044, -1.8044], [-1.8044, -1.8044, -1.8044]],
]
)
assert torch.allclose(inputs.pixel_values[0, :, :3, :3], expected_pixel_values, atol=1e-4)
assert torch.allclose(inputs.prompt_pixel_values[0, :, :3, :3], expected_prompt_pixel_values, atol=1e-4)
assert torch.allclose(inputs.prompt_masks[0, :, :3, :3], expected_prompt_masks, atol=1e-4)
torch.manual_seed(2)
outputs = model(**inputs)
print(outputs)
if verify_logits:
expected_output = torch.tensor(
[
[[-2.1208, -2.1190, -2.1198], [-2.1237, -2.1228, -2.1227], [-2.1232, -2.1226, -2.1228]],
[[-2.0405, -2.0396, -2.0403], [-2.0434, -2.0434, -2.0433], [-2.0428, -2.0432, -2.0434]],
[[-1.8102, -1.8088, -1.8099], [-1.8131, -1.8126, -1.8129], [-1.8130, -1.8128, -1.8131]],
]
)
assert torch.allclose(outputs.pred_masks[0, :, :3, :3], expected_output, atol=1e-4)
print("Looks good!")
else:
print("Converted without verifying logits")
if pytorch_dump_folder_path is not None:
print(f"Saving model and processor for {model_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
image_processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print(f"Pushing model and processor for {model_name} to hub")
model.push_to_hub(f"EduardoPacheco/{model_name}")
image_processor.push_to_hub(f"EduardoPacheco/{model_name}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default="seggpt-vit-large",
type=str,
choices=["seggpt-vit-large"],
help="Name of the SegGpt model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
parser.add_argument(
"--verify_logits",
action="store_false",
help="Whether or not to verify the logits against the original implementation.",
)
parser.add_argument(
"--push_to_hub", action="store_true", help="Whether or not to push the converted model to the 🤗 hub."
)
args = parser.parse_args()
convert_seggpt_checkpoint(args)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/vit_msn/modeling_vit_msn.py
|
# coding=utf-8
# Copyright 2022 Facebook AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ViT MSN (masked siamese network) model."""
import collections.abc
import math
from typing import Dict, List, Optional, Set, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, ImageClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_vit_msn import ViTMSNConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "ViTMSNConfig"
_CHECKPOINT_FOR_DOC = "facebook/vit-msn-small"
from ..deprecated._archive_maps import VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
class ViTMSNEmbeddings(nn.Module):
"""
Construct the CLS token, position and patch embeddings. Optionally, also the mask token.
"""
def __init__(self, config: ViTMSNConfig, use_mask_token: bool = False) -> None:
super().__init__()
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.mask_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size)) if use_mask_token else None
self.patch_embeddings = ViTMSNPatchEmbeddings(config)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = nn.Parameter(torch.zeros(1, num_patches + 1, config.hidden_size))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.config = config
def interpolate_pos_encoding(self, embeddings: torch.Tensor, height: int, width: int) -> torch.Tensor:
"""
This method allows to interpolate the pre-trained position encodings, to be able to use the model on higher
resolution images.
Source:
https://github.com/facebookresearch/dino/blob/de9ee3df6cf39fac952ab558447af1fa1365362a/vision_transformer.py#L174
"""
num_patches = embeddings.shape[1] - 1
num_positions = self.position_embeddings.shape[1] - 1
if num_patches == num_positions and height == width:
return self.position_embeddings
class_pos_embed = self.position_embeddings[:, 0]
patch_pos_embed = self.position_embeddings[:, 1:]
dim = embeddings.shape[-1]
patch_window_height = height // self.config.patch_size
patch_window_width = width // self.config.patch_size
# we add a small number to avoid floating point error in the interpolation
# see discussion at https://github.com/facebookresearch/dino/issues/8
patch_window_height, patch_window_width = patch_window_height + 0.1, patch_window_width + 0.1
patch_pos_embed = patch_pos_embed.reshape(1, int(math.sqrt(num_positions)), int(math.sqrt(num_positions)), dim)
patch_pos_embed = patch_pos_embed.permute(0, 3, 1, 2)
patch_pos_embed = nn.functional.interpolate(
patch_pos_embed,
scale_factor=(
patch_window_height / math.sqrt(num_positions),
patch_window_width / math.sqrt(num_positions),
),
mode="bicubic",
align_corners=False,
)
patch_pos_embed = patch_pos_embed.permute(0, 2, 3, 1).view(1, -1, dim)
return torch.cat((class_pos_embed.unsqueeze(0), patch_pos_embed), dim=1)
def forward(
self,
pixel_values: torch.Tensor,
bool_masked_pos: Optional[torch.BoolTensor] = None,
interpolate_pos_encoding: bool = False,
) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
embeddings = self.patch_embeddings(pixel_values, interpolate_pos_encoding=interpolate_pos_encoding)
if bool_masked_pos is not None:
seq_length = embeddings.shape[1]
mask_tokens = self.mask_token.expand(batch_size, seq_length, -1)
# replace the masked visual tokens by mask_tokens
mask = bool_masked_pos.unsqueeze(-1).type_as(mask_tokens)
embeddings = embeddings * (1.0 - mask) + mask_tokens * mask
# add the [CLS] token to the embedded patch tokens
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
embeddings = torch.cat((cls_tokens, embeddings), dim=1)
# add positional encoding to each token
if interpolate_pos_encoding:
embeddings = embeddings + self.interpolate_pos_encoding(embeddings, height, width)
else:
embeddings = embeddings + self.position_embeddings
embeddings = self.dropout(embeddings)
return embeddings
# Copied from transformers.models.vit.modeling_vit.ViTPatchEmbeddings with ViT->ViTMSN
class ViTMSNPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values: torch.Tensor, interpolate_pos_encoding: bool = False) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
f" Expected {self.num_channels} but got {num_channels}."
)
if not interpolate_pos_encoding:
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model"
f" ({self.image_size[0]}*{self.image_size[1]})."
)
embeddings = self.projection(pixel_values).flatten(2).transpose(1, 2)
return embeddings
# Copied from transformers.models.vit.modeling_vit.ViTSelfAttention with ViT->ViTMSN
class ViTMSNSelfAttention(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size,} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self, hidden_states, head_mask: Optional[torch.Tensor] = None, output_attentions: bool = False
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSelfOutput with ViT->ViTMSN
class ViTMSNSelfOutput(nn.Module):
"""
The residual connection is defined in ViTMSNLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTAttention with ViT->ViTMSN
class ViTMSNAttention(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.attention = ViTMSNSelfAttention(config)
self.output = ViTMSNSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads: Set[int]) -> None:
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_outputs = self.attention(hidden_states, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTIntermediate with ViT->ViTMSN
class ViTMSNIntermediate(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTOutput with ViT->ViTMSN
class ViTMSNOutput(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTLayer with ViT->ViTMSN
class ViTMSNLayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = ViTMSNAttention(config)
self.intermediate = ViTMSNIntermediate(config)
self.output = ViTMSNOutput(config)
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in ViTMSN, layernorm is applied before self-attention
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states
# in ViTMSN, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTEncoder with ViT->ViTMSN
class ViTMSNEncoder(nn.Module):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__()
self.config = config
self.layer = nn.ModuleList([ViTMSNLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
layer_head_mask,
output_attentions,
)
else:
layer_outputs = layer_module(hidden_states, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class ViTMSNPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ViTMSNConfig
base_model_prefix = "vit"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
_no_split_modules = ["ViTMSNAttention"]
# todo: Resort to https://github.com/facebookresearch/msn/blob/main/src/deit.py#L200-#L211
# when creating pre-training scripts.
def _init_weights(self, module: Union[nn.Linear, nn.Conv2d, nn.LayerNorm]) -> None:
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
VIT_MSN_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`ViTMSNConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
VIT_MSN_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`ViTImageProcessor.__call__`]
for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
interpolate_pos_encoding (`bool`, *optional*):
Whether to interpolate the pre-trained position encodings.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ViTMSN Model outputting raw hidden-states without any specific head on top.",
VIT_MSN_START_DOCSTRING,
)
class ViTMSNModel(ViTMSNPreTrainedModel):
def __init__(self, config: ViTMSNConfig, use_mask_token: bool = False):
super().__init__(config)
self.config = config
self.embeddings = ViTMSNEmbeddings(config, use_mask_token=use_mask_token)
self.encoder = ViTMSNEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> ViTMSNPatchEmbeddings:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune: Dict[int, List[int]]) -> None:
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(VIT_MSN_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
bool_masked_pos: Optional[torch.BoolTensor] = None,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
interpolate_pos_encoding: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, BaseModelOutput]:
r"""
bool_masked_pos (`torch.BoolTensor` of shape `(batch_size, num_patches)`, *optional*):
Boolean masked positions. Indicates which patches are masked (1) and which aren't (0).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, ViTMSNModel
>>> import torch
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/vit-msn-small")
>>> model = ViTMSNModel.from_pretrained("facebook/vit-msn-small")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
```"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
pixel_values, bool_masked_pos=bool_masked_pos, interpolate_pos_encoding=interpolate_pos_encoding
)
encoder_outputs = self.encoder(
embedding_output,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
if not return_dict:
head_outputs = (sequence_output,)
return head_outputs + encoder_outputs[1:]
return BaseModelOutput(
last_hidden_state=sequence_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
# Caution: We don't have the weights for the classification head yet. This class
# is here for the users that are interested to fine-tune the base model (ViTMSNModel).
@add_start_docstrings(
"""
ViTMSN Model with an image classification head on top e.g. for ImageNet.
""",
VIT_MSN_START_DOCSTRING,
)
class ViTMSNForImageClassification(ViTMSNPreTrainedModel):
def __init__(self, config: ViTMSNConfig) -> None:
super().__init__(config)
self.num_labels = config.num_labels
self.vit = ViTMSNModel(config)
# Classifier head
self.classifier = nn.Linear(config.hidden_size, config.num_labels) if config.num_labels > 0 else nn.Identity()
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(VIT_MSN_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=ImageClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
interpolate_pos_encoding: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, ImageClassifierOutput]:
r"""
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, ViTMSNForImageClassification
>>> import torch
>>> from PIL import Image
>>> import requests
>>> torch.manual_seed(2) # doctest: +IGNORE_RESULT
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("facebook/vit-msn-small")
>>> model = ViTMSNForImageClassification.from_pretrained("facebook/vit-msn-small")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> with torch.no_grad():
... logits = model(**inputs).logits
>>> # model predicts one of the 1000 ImageNet classes
>>> predicted_label = logits.argmax(-1).item()
>>> print(model.config.id2label[predicted_label])
tusker
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.vit(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
interpolate_pos_encoding=interpolate_pos_encoding,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output[:, 0, :])
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return ImageClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/vit_msn/configuration_vit_msn.py
|
# coding=utf-8
# Copyright 2022 Facebook AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" ViT MSN model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class ViTMSNConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ViTMSNModel`]. It is used to instantiate an ViT
MSN model according to the specified arguments, defining the model architecture. Instantiating a configuration with
the defaults will yield a similar configuration to that of the ViT
[facebook/vit_msn_base](https://huggingface.co/facebook/vit_msn_base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to 224):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
Example:
```python
>>> from transformers import ViTMSNModel, ViTMSNConfig
>>> # Initializing a ViT MSN vit-msn-base style configuration
>>> configuration = ViTConfig()
>>> # Initializing a model from the vit-msn-base style configuration
>>> model = ViTMSNModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "vit_msn"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-06,
image_size=224,
patch_size=16,
num_channels=3,
qkv_bias=True,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.qkv_bias = qkv_bias
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/vit_msn/convert_msn_to_pytorch.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ViT MSN checkpoints from the original repository: https://github.com/facebookresearch/msn"""
import argparse
import json
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import ViTImageProcessor, ViTMSNConfig, ViTMSNModel
from transformers.image_utils import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD
torch.set_grad_enabled(False)
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"module.blocks.{i}.norm1.weight", f"vit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"module.blocks.{i}.norm1.bias", f"vit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append(
(f"module.blocks.{i}.attn.proj.weight", f"vit.encoder.layer.{i}.attention.output.dense.weight")
)
rename_keys.append((f"module.blocks.{i}.attn.proj.bias", f"vit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"module.blocks.{i}.norm2.weight", f"vit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"module.blocks.{i}.norm2.bias", f"vit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"module.blocks.{i}.mlp.fc1.weight", f"vit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"module.blocks.{i}.mlp.fc1.bias", f"vit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"module.blocks.{i}.mlp.fc2.weight", f"vit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"module.blocks.{i}.mlp.fc2.bias", f"vit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("module.cls_token", "vit.embeddings.cls_token"),
("module.patch_embed.proj.weight", "vit.embeddings.patch_embeddings.projection.weight"),
("module.patch_embed.proj.bias", "vit.embeddings.patch_embeddings.projection.bias"),
("module.pos_embed", "vit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("module.norm.weight", "layernorm.weight"),
("module.norm.bias", "layernorm.bias"),
]
)
# if just the base model, we should remove "vit" from all keys that start with "vit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("vit") else pair for pair in rename_keys]
else:
# layernorm + classification head
rename_keys.extend(
[
("norm.weight", "vit.layernorm.weight"),
("norm.bias", "vit.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "vit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"module.blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"module.blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def remove_classification_head_(state_dict):
ignore_keys = ["head.weight", "head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def remove_projection_head(state_dict):
# projection head is used in the self-supervised pre-training in MSN,
# for downstream task it's not needed.
ignore_keys = [
"module.fc.fc1.weight",
"module.fc.fc1.bias",
"module.fc.bn1.weight",
"module.fc.bn1.bias",
"module.fc.bn1.running_mean",
"module.fc.bn1.running_var",
"module.fc.bn1.num_batches_tracked",
"module.fc.fc2.weight",
"module.fc.fc2.bias",
"module.fc.bn2.weight",
"module.fc.bn2.bias",
"module.fc.bn2.running_mean",
"module.fc.bn2.running_var",
"module.fc.bn2.num_batches_tracked",
"module.fc.fc3.weight",
"module.fc.fc3.bias",
]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def convert_vit_msn_checkpoint(checkpoint_url, pytorch_dump_folder_path):
config = ViTMSNConfig()
config.num_labels = 1000
repo_id = "datasets/huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if "s16" in checkpoint_url:
config.hidden_size = 384
config.intermediate_size = 1536
config.num_attention_heads = 6
elif "l16" in checkpoint_url:
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.hidden_dropout_prob = 0.1
elif "b4" in checkpoint_url:
config.patch_size = 4
elif "l7" in checkpoint_url:
config.patch_size = 7
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.hidden_dropout_prob = 0.1
model = ViTMSNModel(config)
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")["target_encoder"]
image_processor = ViTImageProcessor(size=config.image_size)
remove_projection_head(state_dict)
rename_keys = create_rename_keys(config, base_model=True)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model=True)
model.load_state_dict(state_dict)
model.eval()
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
image_processor = ViTImageProcessor(
size=config.image_size, image_mean=IMAGENET_DEFAULT_MEAN, image_std=IMAGENET_DEFAULT_STD
)
inputs = image_processor(images=image, return_tensors="pt")
# forward pass
torch.manual_seed(2)
outputs = model(**inputs)
last_hidden_state = outputs.last_hidden_state
# The following Colab Notebook was used to generate these outputs:
# https://colab.research.google.com/gist/sayakpaul/3672419a04f5997827503fd84079bdd1/scratchpad.ipynb
if "s16" in checkpoint_url:
expected_slice = torch.tensor([[-1.0915, -1.4876, -1.1809]])
elif "b16" in checkpoint_url:
expected_slice = torch.tensor([[14.2889, -18.9045, 11.7281]])
elif "l16" in checkpoint_url:
expected_slice = torch.tensor([[41.5028, -22.8681, 45.6475]])
elif "b4" in checkpoint_url:
expected_slice = torch.tensor([[-4.3868, 5.2932, -0.4137]])
else:
expected_slice = torch.tensor([[-0.1792, -0.6465, 2.4263]])
# verify logits
assert torch.allclose(last_hidden_state[:, 0, :3], expected_slice, atol=1e-4)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--checkpoint_url",
default="https://dl.fbaipublicfiles.com/msn/vits16_800ep.pth.tar",
type=str,
help="URL of the checkpoint you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model directory."
)
args = parser.parse_args()
convert_vit_msn_checkpoint(args.checkpoint_url, args.pytorch_dump_folder_path)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/vit_msn/__init__.py
|
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_torch_available
_import_structure = {"configuration_vit_msn": ["VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP", "ViTMSNConfig"]}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_vit_msn"] = [
"VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST",
"ViTMSNModel",
"ViTMSNForImageClassification",
"ViTMSNPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_vit_msn import VIT_MSN_PRETRAINED_CONFIG_ARCHIVE_MAP, ViTMSNConfig
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_vit_msn import (
VIT_MSN_PRETRAINED_MODEL_ARCHIVE_LIST,
ViTMSNForImageClassification,
ViTMSNModel,
ViTMSNPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/convert_fnet_original_flax_checkpoint_to_pytorch.py
|
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert FNet checkpoint."""
import argparse
import torch
from flax.training.checkpoints import restore_checkpoint
from transformers import FNetConfig, FNetForPreTraining
from transformers.utils import logging
logging.set_verbosity_info()
def convert_flax_checkpoint_to_pytorch(flax_checkpoint_path, fnet_config_file, save_path):
# Initialise PyTorch model
config = FNetConfig.from_json_file(fnet_config_file)
print(f"Building PyTorch model from configuration: {config}")
fnet_pretraining_model = FNetForPreTraining(config)
checkpoint_dict = restore_checkpoint(flax_checkpoint_path, None)
pretrained_model_params = checkpoint_dict["target"]
# Embeddings
# Position IDs
state_dict = fnet_pretraining_model.state_dict()
position_ids = state_dict["fnet.embeddings.position_ids"]
new_state_dict = {"fnet.embeddings.position_ids": position_ids}
# Embedding Layers
new_state_dict["fnet.embeddings.word_embeddings.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["word"]["embedding"]
)
new_state_dict["fnet.embeddings.position_embeddings.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["position"]["embedding"][0]
)
new_state_dict["fnet.embeddings.token_type_embeddings.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["type"]["embedding"]
)
new_state_dict["fnet.embeddings.projection.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["hidden_mapping_in"]["kernel"]
).T
new_state_dict["fnet.embeddings.projection.bias"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["hidden_mapping_in"]["bias"]
)
new_state_dict["fnet.embeddings.LayerNorm.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["layer_norm"]["scale"]
)
new_state_dict["fnet.embeddings.LayerNorm.bias"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["layer_norm"]["bias"]
)
# Encoder Layers
for layer in range(config.num_hidden_layers):
new_state_dict[f"fnet.encoder.layer.{layer}.fourier.output.LayerNorm.weight"] = torch.tensor(
pretrained_model_params["encoder"][f"encoder_{layer}"]["mixing_layer_norm"]["scale"]
)
new_state_dict[f"fnet.encoder.layer.{layer}.fourier.output.LayerNorm.bias"] = torch.tensor(
pretrained_model_params["encoder"][f"encoder_{layer}"]["mixing_layer_norm"]["bias"]
)
new_state_dict[f"fnet.encoder.layer.{layer}.intermediate.dense.weight"] = torch.tensor(
pretrained_model_params["encoder"][f"feed_forward_{layer}"]["intermediate"]["kernel"]
).T
new_state_dict[f"fnet.encoder.layer.{layer}.intermediate.dense.bias"] = torch.tensor(
pretrained_model_params["encoder"][f"feed_forward_{layer}"]["intermediate"]["bias"]
)
new_state_dict[f"fnet.encoder.layer.{layer}.output.dense.weight"] = torch.tensor(
pretrained_model_params["encoder"][f"feed_forward_{layer}"]["output"]["kernel"]
).T
new_state_dict[f"fnet.encoder.layer.{layer}.output.dense.bias"] = torch.tensor(
pretrained_model_params["encoder"][f"feed_forward_{layer}"]["output"]["bias"]
)
new_state_dict[f"fnet.encoder.layer.{layer}.output.LayerNorm.weight"] = torch.tensor(
pretrained_model_params["encoder"][f"encoder_{layer}"]["output_layer_norm"]["scale"]
)
new_state_dict[f"fnet.encoder.layer.{layer}.output.LayerNorm.bias"] = torch.tensor(
pretrained_model_params["encoder"][f"encoder_{layer}"]["output_layer_norm"]["bias"]
)
# Pooler Layers
new_state_dict["fnet.pooler.dense.weight"] = torch.tensor(pretrained_model_params["encoder"]["pooler"]["kernel"]).T
new_state_dict["fnet.pooler.dense.bias"] = torch.tensor(pretrained_model_params["encoder"]["pooler"]["bias"])
# Masked LM Layers
new_state_dict["cls.predictions.transform.dense.weight"] = torch.tensor(
pretrained_model_params["predictions_dense"]["kernel"]
).T
new_state_dict["cls.predictions.transform.dense.bias"] = torch.tensor(
pretrained_model_params["predictions_dense"]["bias"]
)
new_state_dict["cls.predictions.transform.LayerNorm.weight"] = torch.tensor(
pretrained_model_params["predictions_layer_norm"]["scale"]
)
new_state_dict["cls.predictions.transform.LayerNorm.bias"] = torch.tensor(
pretrained_model_params["predictions_layer_norm"]["bias"]
)
new_state_dict["cls.predictions.decoder.weight"] = torch.tensor(
pretrained_model_params["encoder"]["embedder"]["word"]["embedding"]
)
new_state_dict["cls.predictions.decoder.bias"] = torch.tensor(
pretrained_model_params["predictions_output"]["output_bias"]
)
new_state_dict["cls.predictions.bias"] = torch.tensor(pretrained_model_params["predictions_output"]["output_bias"])
# Seq Relationship Layers
new_state_dict["cls.seq_relationship.weight"] = torch.tensor(
pretrained_model_params["classification"]["output_kernel"]
)
new_state_dict["cls.seq_relationship.bias"] = torch.tensor(
pretrained_model_params["classification"]["output_bias"]
)
# Load State Dict
fnet_pretraining_model.load_state_dict(new_state_dict)
# Save PreTrained
print(f"Saving pretrained model to {save_path}")
fnet_pretraining_model.save_pretrained(save_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--flax_checkpoint_path", default=None, type=str, required=True, help="Path to the TensorFlow checkpoint path."
)
parser.add_argument(
"--fnet_config_file",
default=None,
type=str,
required=True,
help=(
"The config json file corresponding to the pre-trained FNet model. \n"
"This specifies the model architecture."
),
)
parser.add_argument("--save_path", default=None, type=str, required=True, help="Path to the output model.")
args = parser.parse_args()
convert_flax_checkpoint_to_pytorch(args.flax_checkpoint_path, args.fnet_config_file, args.save_path)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/modeling_fnet.py
|
# coding=utf-8
# Copyright 2021 Google Research and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch FNet model."""
import warnings
from dataclasses import dataclass
from functools import partial
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...utils import is_scipy_available
if is_scipy_available():
from scipy import linalg
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPooling,
MaskedLMOutput,
ModelOutput,
MultipleChoiceModelOutput,
NextSentencePredictorOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_fnet import FNetConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "google/fnet-base"
_CONFIG_FOR_DOC = "FNetConfig"
from ..deprecated._archive_maps import FNET_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Adapted from https://github.com/google-research/google-research/blob/master/f_net/fourier.py
def _two_dim_matmul(x, matrix_dim_one, matrix_dim_two):
"""Applies 2D matrix multiplication to 3D input arrays."""
seq_length = x.shape[1]
matrix_dim_one = matrix_dim_one[:seq_length, :seq_length]
x = x.type(torch.complex64)
return torch.einsum("bij,jk,ni->bnk", x, matrix_dim_two, matrix_dim_one)
# # Adapted from https://github.com/google-research/google-research/blob/master/f_net/fourier.py
def two_dim_matmul(x, matrix_dim_one, matrix_dim_two):
return _two_dim_matmul(x, matrix_dim_one, matrix_dim_two)
# Adapted from https://github.com/google-research/google-research/blob/master/f_net/fourier.py
def fftn(x):
"""
Applies n-dimensional Fast Fourier Transform (FFT) to input array.
Args:
x: Input n-dimensional array.
Returns:
n-dimensional Fourier transform of input n-dimensional array.
"""
out = x
for axis in reversed(range(x.ndim)[1:]): # We don't need to apply FFT to last axis
out = torch.fft.fft(out, axis=axis)
return out
class FNetEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
# NOTE: This is the project layer and will be needed. The original code allows for different embedding and different model dimensions.
self.projection = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.register_buffer(
"token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long), persistent=False
)
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, :seq_length]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.projection(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class FNetBasicFourierTransform(nn.Module):
def __init__(self, config):
super().__init__()
self._init_fourier_transform(config)
def _init_fourier_transform(self, config):
if not config.use_tpu_fourier_optimizations:
self.fourier_transform = partial(torch.fft.fftn, dim=(1, 2))
elif config.max_position_embeddings <= 4096:
if is_scipy_available():
self.register_buffer(
"dft_mat_hidden", torch.tensor(linalg.dft(config.hidden_size), dtype=torch.complex64)
)
self.register_buffer(
"dft_mat_seq", torch.tensor(linalg.dft(config.tpu_short_seq_length), dtype=torch.complex64)
)
self.fourier_transform = partial(
two_dim_matmul, matrix_dim_one=self.dft_mat_seq, matrix_dim_two=self.dft_mat_hidden
)
else:
logging.warning(
"SciPy is needed for DFT matrix calculation and is not found. Using TPU optimized fast fourier"
" transform instead."
)
self.fourier_transform = fftn
else:
self.fourier_transform = fftn
def forward(self, hidden_states):
# NOTE: We do not use torch.vmap as it is not integrated into PyTorch stable versions.
# Interested users can modify the code to use vmap from the nightly versions, getting the vmap from here:
# https://pytorch.org/docs/master/generated/torch.vmap.html. Note that fourier transform methods will need
# change accordingly.
outputs = self.fourier_transform(hidden_states).real
return (outputs,)
class FNetBasicOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, input_tensor):
hidden_states = self.LayerNorm(input_tensor + hidden_states)
return hidden_states
class FNetFourierTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.self = FNetBasicFourierTransform(config)
self.output = FNetBasicOutput(config)
def forward(self, hidden_states):
self_outputs = self.self(hidden_states)
fourier_output = self.output(self_outputs[0], hidden_states)
outputs = (fourier_output,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert->FNet
class FNetIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->FNet
class FNetOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class FNetLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1 # The dimension which has the sequence length
self.fourier = FNetFourierTransform(config)
self.intermediate = FNetIntermediate(config)
self.output = FNetOutput(config)
def forward(self, hidden_states):
self_fourier_outputs = self.fourier(hidden_states)
fourier_output = self_fourier_outputs[0]
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, fourier_output
)
outputs = (layer_output,)
return outputs
def feed_forward_chunk(self, fourier_output):
intermediate_output = self.intermediate(fourier_output)
layer_output = self.output(intermediate_output, fourier_output)
return layer_output
class FNetEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([FNetLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(self, hidden_states, output_hidden_states=False, return_dict=True):
all_hidden_states = () if output_hidden_states else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(layer_module.__call__, hidden_states)
else:
layer_outputs = layer_module(hidden_states)
hidden_states = layer_outputs[0]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states] if v is not None)
return BaseModelOutput(last_hidden_state=hidden_states, hidden_states=all_hidden_states)
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert->FNet
class FNetPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert->FNet
class FNetPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class FNetLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = FNetPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
def _tie_weights(self):
# To tie those two weights if they get disconnected (on TPU or when the bias is resized)
self.bias = self.decoder.bias
class FNetOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = FNetLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
# Copied from transformers.models.bert.modeling_bert.BertOnlyNSPHead with Bert->FNet
class FNetOnlyNSPHead(nn.Module):
def __init__(self, config):
super().__init__()
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, pooled_output):
seq_relationship_score = self.seq_relationship(pooled_output)
return seq_relationship_score
# Copied from transformers.models.bert.modeling_bert.BertPreTrainingHeads with Bert->FNet
class FNetPreTrainingHeads(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = FNetLMPredictionHead(config)
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, sequence_output, pooled_output):
prediction_scores = self.predictions(sequence_output)
seq_relationship_score = self.seq_relationship(pooled_output)
return prediction_scores, seq_relationship_score
class FNetPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = FNetConfig
base_model_prefix = "fnet"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
# NOTE: Original code uses same initialization as weights for biases as well.
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
@dataclass
class FNetForPreTrainingOutput(ModelOutput):
"""
Output type of [`FNetForPreTraining`].
Args:
loss (*optional*, returned when `labels` is provided, `torch.FloatTensor` of shape `(1,)`):
Total loss as the sum of the masked language modeling loss and the next sequence prediction
(classification) loss.
prediction_logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
seq_relationship_logits (`torch.FloatTensor` of shape `(batch_size, 2)`):
Prediction scores of the next sequence prediction (classification) head (scores of True/False continuation
before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of each layer
plus the initial embedding outputs.
"""
loss: Optional[torch.FloatTensor] = None
prediction_logits: torch.FloatTensor = None
seq_relationship_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
FNET_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`FNetConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
FNET_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert *input_ids* indices into associated vectors than the
model's internal embedding lookup matrix.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare FNet Model transformer outputting raw hidden-states without any specific head on top.",
FNET_START_DOCSTRING,
)
class FNetModel(FNetPreTrainedModel):
"""
The model can behave as an encoder, following the architecture described in [FNet: Mixing Tokens with Fourier
Transforms](https://arxiv.org/abs/2105.03824) by James Lee-Thorp, Joshua Ainslie, Ilya Eckstein, Santiago Ontanon.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = FNetEmbeddings(config)
self.encoder = FNetEncoder(config)
self.pooler = FNetPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[tuple, BaseModelOutput]:
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
batch_size, seq_length = input_shape
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if (
self.config.use_tpu_fourier_optimizations
and seq_length <= 4096
and self.config.tpu_short_seq_length != seq_length
):
raise ValueError(
"The `tpu_short_seq_length` in FNetConfig should be set equal to the sequence length being passed to"
" the model when using TPU optimizations."
)
device = input_ids.device if input_ids is not None else inputs_embeds.device
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
)
encoder_outputs = self.encoder(
embedding_output,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooler_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooler_output) + encoder_outputs[1:]
return BaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooler_output,
hidden_states=encoder_outputs.hidden_states,
)
@add_start_docstrings(
"""
FNet Model with two heads on top as done during the pretraining: a `masked language modeling` head and a `next
sentence prediction (classification)` head.
""",
FNET_START_DOCSTRING,
)
class FNetForPreTraining(FNetPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.bias", "cls.predictions.decoder.weight"]
def __init__(self, config):
super().__init__(config)
self.fnet = FNetModel(config)
self.cls = FNetPreTrainingHeads(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=FNetForPreTrainingOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
next_sentence_label: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, FNetForPreTrainingOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
next_sentence_label (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the next sequence prediction (classification) loss. Input should be a sequence pair
(see `input_ids` docstring) Indices should be in `[0, 1]`:
- 0 indicates sequence B is a continuation of sequence A,
- 1 indicates sequence B is a random sequence.
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, FNetForPreTraining
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("google/fnet-base")
>>> model = FNetForPreTraining.from_pretrained("google/fnet-base")
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.prediction_logits
>>> seq_relationship_logits = outputs.seq_relationship_logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output, pooled_output = outputs[:2]
prediction_scores, seq_relationship_score = self.cls(sequence_output, pooled_output)
total_loss = None
if labels is not None and next_sentence_label is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
next_sentence_loss = loss_fct(seq_relationship_score.view(-1, 2), next_sentence_label.view(-1))
total_loss = masked_lm_loss + next_sentence_loss
if not return_dict:
output = (prediction_scores, seq_relationship_score) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return FNetForPreTrainingOutput(
loss=total_loss,
prediction_logits=prediction_scores,
seq_relationship_logits=seq_relationship_score,
hidden_states=outputs.hidden_states,
)
@add_start_docstrings("""FNet Model with a `language modeling` head on top.""", FNET_START_DOCSTRING)
class FNetForMaskedLM(FNetPreTrainedModel):
_tied_weights_keys = ["cls.predictions.decoder.bias", "cls.predictions.decoder.weight"]
def __init__(self, config):
super().__init__(config)
self.fnet = FNetModel(config)
self.cls = FNetOnlyMLMHead(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(loss=masked_lm_loss, logits=prediction_scores, hidden_states=outputs.hidden_states)
@add_start_docstrings(
"""FNet Model with a `next sentence prediction (classification)` head on top.""",
FNET_START_DOCSTRING,
)
class FNetForNextSentencePrediction(FNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.fnet = FNetModel(config)
self.cls = FNetOnlyNSPHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=NextSentencePredictorOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> Union[Tuple, NextSentencePredictorOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the next sequence prediction (classification) loss. Input should be a sequence pair
(see `input_ids` docstring). Indices should be in `[0, 1]`:
- 0 indicates sequence B is a continuation of sequence A,
- 1 indicates sequence B is a random sequence.
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, FNetForNextSentencePrediction
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("google/fnet-base")
>>> model = FNetForNextSentencePrediction.from_pretrained("google/fnet-base")
>>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced."
>>> next_sentence = "The sky is blue due to the shorter wavelength of blue light."
>>> encoding = tokenizer(prompt, next_sentence, return_tensors="pt")
>>> outputs = model(**encoding, labels=torch.LongTensor([1]))
>>> logits = outputs.logits
>>> assert logits[0, 0] < logits[0, 1] # next sentence was random
```"""
if "next_sentence_label" in kwargs:
warnings.warn(
"The `next_sentence_label` argument is deprecated and will be removed in a future version, use"
" `labels` instead.",
FutureWarning,
)
labels = kwargs.pop("next_sentence_label")
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
seq_relationship_scores = self.cls(pooled_output)
next_sentence_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
next_sentence_loss = loss_fct(seq_relationship_scores.view(-1, 2), labels.view(-1))
if not return_dict:
output = (seq_relationship_scores,) + outputs[2:]
return ((next_sentence_loss,) + output) if next_sentence_loss is not None else output
return NextSentencePredictorOutput(
loss=next_sentence_loss,
logits=seq_relationship_scores,
hidden_states=outputs.hidden_states,
)
@add_start_docstrings(
"""
FNet Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
FNET_START_DOCSTRING,
)
class FNetForSequenceClassification(FNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.fnet = FNetModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
@add_start_docstrings(
"""
FNet Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
FNET_START_DOCSTRING,
)
class FNetForMultipleChoice(FNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.fnet = FNetModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MultipleChoiceModelOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ...,
num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See
`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(loss=loss, logits=reshaped_logits, hidden_states=outputs.hidden_states)
@add_start_docstrings(
"""
FNet Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
FNET_START_DOCSTRING,
)
class FNetForTokenClassification(FNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.fnet = FNetModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(loss=loss, logits=logits, hidden_states=outputs.hidden_states)
@add_start_docstrings(
"""
FNet Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FNET_START_DOCSTRING,
)
class FNetForQuestionAnswering(FNetPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.fnet = FNetModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(FNET_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
start_positions: Optional[torch.Tensor] = None,
end_positions: Optional[torch.Tensor] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, QuestionAnsweringModelOutput]:
r"""
start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.fnet(
input_ids,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1).contiguous()
end_logits = end_logits.squeeze(-1).contiguous()
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions = start_positions.clamp(0, ignored_index)
end_positions = end_positions.clamp(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss, start_logits=start_logits, end_logits=end_logits, hidden_states=outputs.hidden_states
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/configuration_fnet.py
|
# coding=utf-8
# Copyright 2021 Google AI and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" FNet model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import FNET_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class FNetConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`FNetModel`]. It is used to instantiate an FNet
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the FNet
[google/fnet-base](https://huggingface.co/google/fnet-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 32000):
Vocabulary size of the FNet model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`FNetModel`] or [`TFFNetModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimension of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimension of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu_new"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
type_vocab_size (`int`, *optional*, defaults to 4):
The vocabulary size of the `token_type_ids` passed when calling [`FNetModel`] or [`TFFNetModel`].
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
use_tpu_fourier_optimizations (`bool`, *optional*, defaults to `False`):
Determines whether to use TPU optimized FFTs. If `True`, the model will favor axis-wise FFTs transforms.
Set to `False` for GPU/CPU hardware, in which case n-dimensional FFTs are used.
tpu_short_seq_length (`int`, *optional*, defaults to 512):
The sequence length that is expected by the model when using TPUs. This will be used to initialize the DFT
matrix only when *use_tpu_fourier_optimizations* is set to `True` and the input sequence is shorter than or
equal to 4096 tokens.
Example:
```python
>>> from transformers import FNetConfig, FNetModel
>>> # Initializing a FNet fnet-base style configuration
>>> configuration = FNetConfig()
>>> # Initializing a model (with random weights) from the fnet-base style configuration
>>> model = FNetModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "fnet"
def __init__(
self,
vocab_size=32000,
hidden_size=768,
num_hidden_layers=12,
intermediate_size=3072,
hidden_act="gelu_new",
hidden_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=4,
initializer_range=0.02,
layer_norm_eps=1e-12,
use_tpu_fourier_optimizations=False,
tpu_short_seq_length=512,
pad_token_id=3,
bos_token_id=1,
eos_token_id=2,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
self.vocab_size = vocab_size
self.max_position_embeddings = max_position_embeddings
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.initializer_range = initializer_range
self.type_vocab_size = type_vocab_size
self.layer_norm_eps = layer_norm_eps
self.use_tpu_fourier_optimizations = use_tpu_fourier_optimizations
self.tpu_short_seq_length = tpu_short_seq_length
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/__init__.py
|
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_sentencepiece_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {"configuration_fnet": ["FNET_PRETRAINED_CONFIG_ARCHIVE_MAP", "FNetConfig"]}
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_fnet"] = ["FNetTokenizer"]
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_fnet_fast"] = ["FNetTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_fnet"] = [
"FNET_PRETRAINED_MODEL_ARCHIVE_LIST",
"FNetForMaskedLM",
"FNetForMultipleChoice",
"FNetForNextSentencePrediction",
"FNetForPreTraining",
"FNetForQuestionAnswering",
"FNetForSequenceClassification",
"FNetForTokenClassification",
"FNetLayer",
"FNetModel",
"FNetPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_fnet import FNET_PRETRAINED_CONFIG_ARCHIVE_MAP, FNetConfig
try:
if not is_sentencepiece_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_fnet import FNetTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_fnet_fast import FNetTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_fnet import (
FNET_PRETRAINED_MODEL_ARCHIVE_LIST,
FNetForMaskedLM,
FNetForMultipleChoice,
FNetForNextSentencePrediction,
FNetForPreTraining,
FNetForQuestionAnswering,
FNetForSequenceClassification,
FNetForTokenClassification,
FNetLayer,
FNetModel,
FNetPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/tokenization_fnet_fast.py
|
# coding=utf-8
# Copyright 2021 Google AI, Google Brain and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization classes for FNet model."""
import os
from shutil import copyfile
from typing import List, Optional, Tuple
from ...tokenization_utils import AddedToken
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import is_sentencepiece_available, logging
if is_sentencepiece_available():
from .tokenization_fnet import FNetTokenizer
else:
FNetTokenizer = None
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "spiece.model", "tokenizer_file": "tokenizer.json"}
SPIECE_UNDERLINE = "▁"
class FNetTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" FNetTokenizer (backed by HuggingFace's *tokenizers* library). Adapted from
[`AlbertTokenizerFast`]. Based on
[Unigram](https://huggingface.co/docs/tokenizers/python/latest/components.html?highlight=unigram#models). This
tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a *.spm* extension) that
contains the vocabulary necessary to instantiate a tokenizer.
do_lower_case (`bool`, *optional*, defaults to `False`):
Whether or not to lowercase the input when tokenizing.
remove_space (`bool`, *optional*, defaults to `True`):
Whether or not to strip the text when tokenizing (removing excess spaces before and after the string).
keep_accents (`bool`, *optional*, defaults to `True`):
Whether or not to keep accents when tokenizing.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "token_type_ids"]
slow_tokenizer_class = FNetTokenizer
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
do_lower_case=False,
remove_space=True,
keep_accents=True,
unk_token="<unk>",
sep_token="[SEP]",
pad_token="<pad>",
cls_token="[CLS]",
mask_token="[MASK]",
**kwargs,
):
# Mask token behave like a normal word, i.e. include the space before it and
# is included in the raw text, there should be a match in a non-normalized sentence.
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
cls_token = AddedToken(cls_token, lstrip=False, rstrip=False) if isinstance(cls_token, str) else cls_token
sep_token = AddedToken(sep_token, lstrip=False, rstrip=False) if isinstance(sep_token, str) else sep_token
super().__init__(
vocab_file,
tokenizer_file=tokenizer_file,
do_lower_case=do_lower_case,
remove_space=remove_space,
keep_accents=keep_accents,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
**kwargs,
)
self.do_lower_case = do_lower_case
self.remove_space = remove_space
self.keep_accents = keep_accents
self.vocab_file = vocab_file
@property
def can_save_slow_tokenizer(self) -> bool:
return os.path.isfile(self.vocab_file) if self.vocab_file else False
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An FNet sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: list of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return cls + token_ids_0 + sep
return cls + token_ids_0 + sep + token_ids_1 + sep
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Creates a mask from the two sequences passed to be used in a sequence-pair classification task. An FNet
sequence pair mask has the following format:
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
| first sequence | second sequence |
```
if token_ids_1 is None, only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of ids.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
return (out_vocab_file,)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/fnet/tokenization_fnet.py
|
# coding=utf-8
# Copyright 2021 Google Research, Google AI, Google Brain and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization classes for FNet model."""
import os
import unicodedata
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "spiece.model"}
SPIECE_UNDERLINE = "▁"
class FNetTokenizer(PreTrainedTokenizer):
"""
Construct an FNet tokenizer. Adapted from [`AlbertTokenizer`]. Based on
[SentencePiece](https://github.com/google/sentencepiece). This tokenizer inherits from [`PreTrainedTokenizer`]
which contains most of the main methods. Users should refer to this superclass for more information regarding those
methods.
Args:
vocab_file (`str`):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a *.spm* extension) that
contains the vocabulary necessary to instantiate a tokenizer.
do_lower_case (`bool`, *optional*, defaults to `False`):
Whether or not to lowercase the input when tokenizing.
remove_space (`bool`, *optional*, defaults to `True`):
Whether or not to strip the text when tokenizing (removing excess spaces before and after the string).
keep_accents (`bool`, *optional*, defaults to `True`):
Whether or not to keep accents when tokenizing.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (`str`, *optional*, defaults to `"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (`str`, *optional*, defaults to `"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (`str`, *optional*, defaults to `"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
sp_model_kwargs (`dict`, *optional*):
Will be passed to the `SentencePieceProcessor.__init__()` method. The [Python wrapper for
SentencePiece](https://github.com/google/sentencepiece/tree/master/python) can be used, among other things,
to set:
- `enable_sampling`: Enable subword regularization.
- `nbest_size`: Sampling parameters for unigram. Invalid for BPE-Dropout.
- `nbest_size = {0,1}`: No sampling is performed.
- `nbest_size > 1`: samples from the nbest_size results.
- `nbest_size < 0`: assuming that nbest_size is infinite and samples from the all hypothesis (lattice)
using forward-filtering-and-backward-sampling algorithm.
- `alpha`: Smoothing parameter for unigram sampling, and dropout probability of merge operations for
BPE-dropout.
Attributes:
sp_model (`SentencePieceProcessor`):
The *SentencePiece* processor that is used for every conversion (string, tokens and IDs).
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "token_type_ids"]
def __init__(
self,
vocab_file,
do_lower_case=False,
remove_space=True,
keep_accents=True,
unk_token="<unk>",
sep_token="[SEP]",
pad_token="<pad>",
cls_token="[CLS]",
mask_token="[MASK]",
sp_model_kwargs: Optional[Dict[str, Any]] = None,
**kwargs,
) -> None:
# Mask token behave like a normal word, i.e. include the space before it and
# is included in the raw text, there should be a match in a non-normalized sentence.
mask_token = AddedToken(mask_token, lstrip=True, special=True) if isinstance(mask_token, str) else mask_token
cls_token = AddedToken(cls_token, special=True) if isinstance(cls_token, str) else cls_token
sep_token = AddedToken(sep_token, special=True) if isinstance(sep_token, str) else sep_token
mask_token = AddedToken(mask_token, special=True) if isinstance(mask_token, str) else mask_token
self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
self.do_lower_case = do_lower_case
self.remove_space = remove_space
self.keep_accents = keep_accents
self.vocab_file = vocab_file
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(vocab_file)
super().__init__(
do_lower_case=do_lower_case,
remove_space=remove_space,
keep_accents=keep_accents,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
sp_model_kwargs=self.sp_model_kwargs,
**kwargs,
)
@property
def vocab_size(self):
return len(self.sp_model)
def get_vocab(self):
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
def __getstate__(self):
state = self.__dict__.copy()
state["sp_model"] = None
return state
def __setstate__(self, d):
self.__dict__ = d
# for backward compatibility
if not hasattr(self, "sp_model_kwargs"):
self.sp_model_kwargs = {}
self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
self.sp_model.Load(self.vocab_file)
def preprocess_text(self, inputs):
if self.remove_space:
outputs = " ".join(inputs.strip().split())
else:
outputs = inputs
outputs = outputs.replace("``", '"').replace("''", '"')
if not self.keep_accents:
outputs = unicodedata.normalize("NFKD", outputs)
outputs = "".join([c for c in outputs if not unicodedata.combining(c)])
if self.do_lower_case:
outputs = outputs.lower()
return outputs
def _tokenize(self, text: str) -> List[str]:
"""Tokenize a string."""
text = self.preprocess_text(text)
pieces = self.sp_model.encode(text, out_type=str)
new_pieces = []
for piece in pieces:
if len(piece) > 1 and piece[-1] == str(",") and piece[-2].isdigit():
cur_pieces = self.sp_model.EncodeAsPieces(piece[:-1].replace(SPIECE_UNDERLINE, ""))
if piece[0] != SPIECE_UNDERLINE and cur_pieces[0][0] == SPIECE_UNDERLINE:
if len(cur_pieces[0]) == 1:
cur_pieces = cur_pieces[1:]
else:
cur_pieces[0] = cur_pieces[0][1:]
cur_pieces.append(piece[-1])
new_pieces.extend(cur_pieces)
else:
new_pieces.append(piece)
return new_pieces
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.sp_model.PieceToId(token)
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.sp_model.IdToPiece(index)
# Copied from transformers.models.albert.tokenization_albert.AlbertTokenizer.convert_tokens_to_string
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
current_sub_tokens = []
out_string = ""
prev_is_special = False
for token in tokens:
# make sure that special tokens are not decoded using sentencepiece model
if token in self.all_special_tokens:
if not prev_is_special:
out_string += " "
out_string += self.sp_model.decode(current_sub_tokens) + token
prev_is_special = True
current_sub_tokens = []
else:
current_sub_tokens.append(token)
prev_is_special = False
out_string += self.sp_model.decode(current_sub_tokens)
return out_string.strip()
def _decode(
self,
token_ids: List[int],
skip_special_tokens: bool = False,
clean_up_tokenization_spaces: bool = None,
spaces_between_special_tokens: bool = False,
**kwargs,
) -> str:
text = super()._decode(
token_ids=token_ids,
skip_special_tokens=skip_special_tokens,
clean_up_tokenization_spaces=clean_up_tokenization_spaces,
spaces_between_special_tokens=spaces_between_special_tokens,
**kwargs,
)
# Mimic the behavior of the Rust tokenizer:
# No space after <unk>
if not spaces_between_special_tokens:
text = text.replace("<unk> ", "<unk>")
return text
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An FNet sequence has the following format:
- single sequence: `[CLS] X [SEP]`
- pair of sequences: `[CLS] A [SEP] B [SEP]`
Args:
token_ids_0 (`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [input IDs](../glossary#input-ids) with the appropriate special tokens.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return cls + token_ids_0 + sep
return cls + token_ids_0 + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` method.
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
return super().get_special_tokens_mask(
token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
)
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. An FNet sequence
pair mask has the following format: :
```
0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 | first sequence | second sequence |
```
If `token_ids_1` is `None`, this method only returns the first portion of the mask (0s).
Args:
token_ids_0 (`List[int]`):
List of IDs.
token_ids_1 (`List[int]`, *optional*):
Optional second list of IDs for sequence pairs.
Returns:
`List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep) * [0] + len(token_ids_1 + sep) * [1]
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
copyfile(self.vocab_file, out_vocab_file)
elif not os.path.isfile(self.vocab_file):
with open(out_vocab_file, "wb") as fi:
content_spiece_model = self.sp_model.serialized_model_proto()
fi.write(content_spiece_model)
return (out_vocab_file,)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/nougat/image_processing_nougat.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for Nougat."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import (
get_resize_output_image_size,
pad,
resize,
to_channel_dimension_format,
to_pil_image,
)
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
validate_kwargs,
validate_preprocess_arguments,
)
from ...utils import TensorType, logging
from ...utils.import_utils import is_cv2_available, is_vision_available
logger = logging.get_logger(__name__)
if is_cv2_available():
pass
if is_vision_available():
import PIL
class NougatImageProcessor(BaseImageProcessor):
r"""
Constructs a Nougat image processor.
Args:
do_crop_margin (`bool`, *optional*, defaults to `True`):
Whether to crop the image margins.
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by
`do_resize` in the `preprocess` method.
size (`Dict[str, int]` *optional*, defaults to `{"height": 896, "width": 672}`):
Size of the image after resizing. Can be overridden by `size` in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BILINEAR`):
Resampling filter to use if resizing the image. Can be overridden by `resample` in the `preprocess` method.
do_thumbnail (`bool`, *optional*, defaults to `True`):
Whether to resize the image using thumbnail method.
do_align_long_axis (`bool`, *optional*, defaults to `False`):
Whether to align the long axis of the image with the long axis of `size` by rotating by 90 degrees.
do_pad (`bool`, *optional*, defaults to `True`):
Whether to pad the images to the largest image size in the batch.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the `do_rescale`
parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overridden by the `rescale_factor` parameter in the
`preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by `do_normalize` in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_STD`):
Image standard deviation.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_crop_margin: bool = True,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_thumbnail: bool = True,
do_align_long_axis: bool = False,
do_pad: bool = True,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 896, "width": 672}
size = get_size_dict(size)
self.do_crop_margin = do_crop_margin
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_thumbnail = do_thumbnail
self.do_align_long_axis = do_align_long_axis
self.do_pad = do_pad
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
self._valid_processor_keys = [
"images",
"do_crop_margin",
"do_resize",
"size",
"resample",
"do_thumbnail",
"do_align_long_axis",
"do_pad",
"do_rescale",
"rescale_factor",
"do_normalize",
"image_mean",
"image_std",
"return_tensors",
"data_format",
"input_data_format",
]
def python_find_non_zero(self, image: np.array):
"""This is a reimplementation of a findNonZero function equivalent to cv2."""
non_zero_indices = np.column_stack(np.nonzero(image))
idxvec = non_zero_indices[:, [1, 0]]
idxvec = idxvec.reshape(-1, 1, 2)
return idxvec
def python_bounding_rect(self, coordinates):
"""This is a reimplementation of a BoundingRect function equivalent to cv2."""
min_values = np.min(coordinates, axis=(0, 1)).astype(int)
max_values = np.max(coordinates, axis=(0, 1)).astype(int)
x_min, y_min = min_values[0], min_values[1]
width = max_values[0] - x_min + 1
height = max_values[1] - y_min + 1
return x_min, y_min, width, height
def crop_margin(
self,
image: np.array,
gray_threshold: int = 200,
data_format: Optional[ChannelDimension] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.array:
"""
Crops the margin of the image. Gray pixels are considered margin (i.e., pixels with a value below the
threshold).
Args:
image (`np.array`):
The image to be cropped.
gray_threshold (`int`, *optional*, defaults to `200`)
Value below which pixels are considered to be gray.
data_format (`ChannelDimension`, *optional*):
The channel dimension format of the output image. If unset, will use the inferred format from the
input.
input_data_format (`ChannelDimension`, *optional*):
The channel dimension format of the input image. If unset, will use the inferred format from the input.
"""
if input_data_format is None:
input_data_format = infer_channel_dimension_format(image)
image = to_pil_image(image, input_data_format=input_data_format)
data = np.array(image.convert("L")).astype(np.uint8)
max_val = data.max()
min_val = data.min()
if max_val == min_val:
image = np.array(image)
image = (
to_channel_dimension_format(image, data_format, input_data_format)
if data_format is not None
else image
)
return image
data = (data - min_val) / (max_val - min_val) * 255
gray = data < gray_threshold
coords = self.python_find_non_zero(gray)
x_min, y_min, width, height = self.python_bounding_rect(coords)
image = image.crop((x_min, y_min, x_min + width, y_min + height))
image = np.array(image).astype(np.uint8)
image = to_channel_dimension_format(image, input_data_format, ChannelDimension.LAST)
image = (
to_channel_dimension_format(image, data_format, input_data_format) if data_format is not None else image
)
return image
# Copied from transformers.models.donut.image_processing_donut.DonutImageProcessor.align_long_axis
def align_long_axis(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
"""
Align the long axis of the image to the longest axis of the specified size.
Args:
image (`np.ndarray`):
The image to be aligned.
size (`Dict[str, int]`):
The size `{"height": h, "width": w}` to align the long axis to.
data_format (`str` or `ChannelDimension`, *optional*):
The data format of the output image. If unset, the same format as the input image is used.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
Returns:
`np.ndarray`: The aligned image.
"""
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
output_height, output_width = size["height"], size["width"]
if (output_width < output_height and input_width > input_height) or (
output_width > output_height and input_width < input_height
):
image = np.rot90(image, 3)
if data_format is not None:
image = to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format)
return image
def pad_image(
self,
image: np.ndarray,
size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
"""
Pad the image to the specified size at the top, bottom, left and right.
Args:
image (`np.ndarray`):
The image to be padded.
size (`Dict[str, int]`):
The size `{"height": h, "width": w}` to pad the image to.
data_format (`str` or `ChannelDimension`, *optional*):
The data format of the output image. If unset, the same format as the input image is used.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
output_height, output_width = size["height"], size["width"]
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
delta_width = output_width - input_width
delta_height = output_height - input_height
pad_top = delta_height // 2
pad_left = delta_width // 2
pad_bottom = delta_height - pad_top
pad_right = delta_width - pad_left
padding = ((pad_top, pad_bottom), (pad_left, pad_right))
return pad(image, padding, data_format=data_format, input_data_format=input_data_format)
# Copied from transformers.models.donut.image_processing_donut.DonutImageProcessor.thumbnail
def thumbnail(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize the image to make a thumbnail. The image is resized so that no dimension is larger than any
corresponding dimension of the specified size.
Args:
image (`np.ndarray`):
The image to be resized.
size (`Dict[str, int]`):
The size `{"height": h, "width": w}` to resize the image to.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
The resampling filter to use.
data_format (`Optional[Union[str, ChannelDimension]]`, *optional*):
The data format of the output image. If unset, the same format as the input image is used.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
output_height, output_width = size["height"], size["width"]
# We always resize to the smallest of either the input or output size.
height = min(input_height, output_height)
width = min(input_width, output_width)
if height == input_height and width == input_width:
return image
if input_height > input_width:
width = int(input_width * height / input_height)
elif input_width > input_height:
height = int(input_height * width / input_width)
return resize(
image,
size=(height, width),
resample=resample,
reducing_gap=2.0,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
# Copied from transformers.models.donut.image_processing_donut.DonutImageProcessor.resize
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resizes `image` to `(height, width)` specified by `size` using the PIL library.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Size of the output image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
size = get_size_dict(size)
shortest_edge = min(size["height"], size["width"])
output_size = get_resize_output_image_size(
image, size=shortest_edge, default_to_square=False, input_data_format=input_data_format
)
resized_image = resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
return resized_image
def preprocess(
self,
images: ImageInput,
do_crop_margin: bool = None,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_thumbnail: bool = None,
do_align_long_axis: bool = None,
do_pad: bool = None,
do_rescale: bool = None,
rescale_factor: Union[int, float] = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: Optional[ChannelDimension] = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255.
do_crop_margin (`bool`, *optional*, defaults to `self.do_crop_margin`):
Whether to crop the image margins.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after resizing. Shortest edge of the image is resized to min(size["height"],
size["width"]) with the longest edge resized to keep the input aspect ratio.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`. Only
has an effect if `do_resize` is set to `True`.
do_thumbnail (`bool`, *optional*, defaults to `self.do_thumbnail`):
Whether to resize the image using thumbnail method.
do_align_long_axis (`bool`, *optional*, defaults to `self.do_align_long_axis`):
Whether to align the long axis of the image with the long axis of `size` by rotating by 90 degrees.
do_pad (`bool`, *optional*, defaults to `self.do_pad`):
Whether to pad the images to the largest image size in the batch.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image by the specified scale `rescale_factor`.
rescale_factor (`int` or `float`, *optional*, defaults to `self.rescale_factor`):
Scale factor to use if rescaling the image.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to use for normalization.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to use for normalization.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: defaults to the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_crop_margin = do_crop_margin if do_crop_margin is not None else self.do_crop_margin
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
resample = resample if resample is not None else self.resample
do_thumbnail = do_thumbnail if do_thumbnail is not None else self.do_thumbnail
do_align_long_axis = do_align_long_axis if do_align_long_axis is not None else self.do_align_long_axis
do_pad = do_pad if do_pad is not None else self.do_pad
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
images = make_list_of_images(images)
validate_kwargs(captured_kwargs=kwargs.keys(), valid_processor_keys=self._valid_processor_keys)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
size_divisibility=size, # There is no pad divisibility in this processor, but pad requires the size arg.
do_resize=do_resize,
size=size,
resample=resample,
)
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_crop_margin:
images = [self.crop_margin(image, input_data_format=input_data_format) for image in images]
if do_align_long_axis:
images = [self.align_long_axis(image, size=size, input_data_format=input_data_format) for image in images]
if do_resize:
images = [
self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
for image in images
]
if do_thumbnail:
images = [self.thumbnail(image=image, size=size, input_data_format=input_data_format) for image in images]
if do_pad:
images = [self.pad_image(image=image, size=size, input_data_format=input_data_format) for image in images]
if do_rescale:
images = [
self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
for image in images
]
if do_normalize:
images = [
self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/nougat/convert_nougat_to_hf.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert Nougat checkpoints using the original `nougat` library. URL:
https://github.com/facebookresearch/nougat/tree/main"""
import argparse
import torch
from huggingface_hub import hf_hub_download
from nougat import NougatModel
from nougat.dataset.rasterize import rasterize_paper
from nougat.utils.checkpoint import get_checkpoint
from PIL import Image
from transformers import (
DonutSwinConfig,
DonutSwinModel,
MBartConfig,
MBartForCausalLM,
NougatImageProcessor,
NougatProcessor,
NougatTokenizerFast,
VisionEncoderDecoderModel,
)
def get_configs(model):
original_config = model.config
encoder_config = DonutSwinConfig(
image_size=original_config.input_size,
patch_size=4,
depths=original_config.encoder_layer,
num_heads=[4, 8, 16, 32],
window_size=original_config.window_size,
embed_dim=128,
)
decoder_config = MBartConfig(
is_decoder=True,
is_encoder_decoder=False,
add_cross_attention=True,
decoder_layers=original_config.decoder_layer,
max_position_embeddings=original_config.max_position_embeddings,
vocab_size=len(
model.decoder.tokenizer
), # several special tokens are added to the vocab of XLMRobertaTokenizer, see repo on the hub (added_tokens.json)
scale_embedding=True,
add_final_layer_norm=True,
tie_word_embeddings=False,
)
return encoder_config, decoder_config
# Copied from transformers.models.donut.convert_donut_to_pytorch.rename_key
def rename_key(name):
if "encoder.model" in name:
name = name.replace("encoder.model", "encoder")
if "decoder.model" in name:
name = name.replace("decoder.model", "decoder")
if "patch_embed.proj" in name:
name = name.replace("patch_embed.proj", "embeddings.patch_embeddings.projection")
if "patch_embed.norm" in name:
name = name.replace("patch_embed.norm", "embeddings.norm")
if name.startswith("encoder"):
if "layers" in name:
name = "encoder." + name
if "attn.proj" in name:
name = name.replace("attn.proj", "attention.output.dense")
if "attn" in name and "mask" not in name:
name = name.replace("attn", "attention.self")
if "norm1" in name:
name = name.replace("norm1", "layernorm_before")
if "norm2" in name:
name = name.replace("norm2", "layernorm_after")
if "mlp.fc1" in name:
name = name.replace("mlp.fc1", "intermediate.dense")
if "mlp.fc2" in name:
name = name.replace("mlp.fc2", "output.dense")
if name == "encoder.norm.weight":
name = "encoder.layernorm.weight"
if name == "encoder.norm.bias":
name = "encoder.layernorm.bias"
return name
# Copied from transformers.models.donut.convert_donut_to_pytorch.convert_state_dict
def convert_state_dict(orig_state_dict, model):
for key in orig_state_dict.copy().keys():
val = orig_state_dict.pop(key)
if "qkv" in key:
key_split = key.split(".")
layer_num = int(key_split[3])
block_num = int(key_split[5])
dim = model.encoder.encoder.layers[layer_num].blocks[block_num].attention.self.all_head_size
if "weight" in key:
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.query.weight"
] = val[:dim, :]
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.key.weight"
] = val[dim : dim * 2, :]
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.value.weight"
] = val[-dim:, :]
else:
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.query.bias"
] = val[:dim]
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.key.bias"
] = val[dim : dim * 2]
orig_state_dict[
f"encoder.encoder.layers.{layer_num}.blocks.{block_num}.attention.self.value.bias"
] = val[-dim:]
elif "attn_mask" in key or key in ["encoder.model.norm.weight", "encoder.model.norm.bias"]:
# HuggingFace implementation doesn't use attn_mask buffer
# and model doesn't use final LayerNorms for the encoder
pass
else:
orig_state_dict[rename_key(key)] = val
return orig_state_dict
def convert_nougat_checkpoint(model_tag, pytorch_dump_folder_path=None, push_to_hub=False):
# load original model
checkpoint_path = get_checkpoint(None, model_tag)
original_model = NougatModel.from_pretrained(checkpoint_path)
original_model.eval()
# load HuggingFace model
encoder_config, decoder_config = get_configs(original_model)
encoder = DonutSwinModel(encoder_config)
decoder = MBartForCausalLM(decoder_config)
model = VisionEncoderDecoderModel(encoder=encoder, decoder=decoder)
model.eval()
state_dict = original_model.state_dict()
new_state_dict = convert_state_dict(state_dict, model)
model.load_state_dict(new_state_dict)
# verify results on PDF
filepath = hf_hub_download(repo_id="ysharma/nougat", filename="input/nougat.pdf", repo_type="space")
images = rasterize_paper(pdf=filepath, return_pil=True)
image = Image.open(images[0])
tokenizer_file = checkpoint_path / "tokenizer.json"
tokenizer = NougatTokenizerFast(tokenizer_file=str(tokenizer_file))
tokenizer.pad_token = "<pad>"
tokenizer.bos_token = "<s>"
tokenizer.eos_token = "</s>"
tokenizer.unk_token = "<unk>"
tokenizer.model_max_length = original_model.config.max_length
size = {"height": original_model.config.input_size[0], "width": original_model.config.input_size[1]}
image_processor = NougatImageProcessor(
do_align_long_axis=original_model.config.align_long_axis,
size=size,
)
processor = NougatProcessor(image_processor=image_processor, tokenizer=tokenizer)
# verify pixel_values
pixel_values = processor(image, return_tensors="pt").pixel_values
original_pixel_values = original_model.encoder.prepare_input(image).unsqueeze(0)
assert torch.allclose(original_pixel_values, pixel_values)
# verify patch embeddings
original_patch_embed = original_model.encoder.model.patch_embed(pixel_values)
patch_embeddings, _ = model.encoder.embeddings(pixel_values)
assert torch.allclose(original_patch_embed, patch_embeddings)
# verify encoder hidden states
original_last_hidden_state = original_model.encoder(pixel_values)
last_hidden_state = model.encoder(pixel_values).last_hidden_state
assert torch.allclose(original_last_hidden_state, last_hidden_state, atol=1e-2)
# NOTE original model does not use tied weights for embeddings of decoder
original_embeddings = original_model.decoder.model.model.decoder.embed_tokens
embeddings = model.decoder.model.decoder.embed_tokens
assert torch.allclose(original_embeddings.weight, embeddings.weight, atol=1e-3)
# verify decoder hidden states
prompt = "hello world"
decoder_input_ids = original_model.decoder.tokenizer(
prompt, add_special_tokens=False, return_tensors="pt"
).input_ids
decoder_attention_mask = torch.ones_like(decoder_input_ids)
original_logits = original_model(
image_tensors=pixel_values, decoder_input_ids=decoder_input_ids, attention_mask=decoder_attention_mask
).logits
logits = model(
pixel_values,
decoder_input_ids=decoder_input_ids[:, :-1],
decoder_attention_mask=decoder_attention_mask[:, :-1],
).logits
assert torch.allclose(original_logits, logits, atol=1e-3)
# verify generation
outputs = model.generate(
pixel_values,
min_length=1,
max_length=30,
pad_token_id=tokenizer.pad_token_id,
eos_token_id=tokenizer.eos_token_id,
use_cache=True,
bad_words_ids=[
[tokenizer.unk_token_id],
],
return_dict_in_generate=True,
do_sample=False,
)
generated = tokenizer.batch_decode(outputs.sequences, skip_special_tokens=True)[0]
if model_tag == "0.1.0-base":
expected_generation = "# Nougat: Neural Optical Understanding for Academic Documents\n\nLukas Blecher\n\nCorrespondence to: lblec"
elif model_tag == "0.1.0-small":
expected_generation = (
"# Nougat: Neural Optical Understanding for Academic Documents\n\nLukas Blecher\n\nCorrespondence to: lble"
)
else:
raise ValueError(f"Unexpected model tag: {model_tag}")
assert generated == expected_generation
print("Looks ok!")
if pytorch_dump_folder_path is not None:
print(f"Saving model and processor to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
tag_to_name = {"0.1.0-base": "nougat-base", "0.1.0-small": "nougat-small"}
model_name = tag_to_name[model_tag]
model.push_to_hub(f"facebook/{model_name}")
processor.push_to_hub(f"facebook/{model_name}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_tag",
default="0.1.0-base",
required=False,
type=str,
choices=["0.1.0-base", "0.1.0-small"],
help="Tag of the original model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
required=False,
type=str,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
help="Whether or not to push the converted model and processor to the 🤗 hub.",
)
args = parser.parse_args()
convert_nougat_checkpoint(args.model_tag, args.pytorch_dump_folder_path, args.push_to_hub)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/nougat/__init__.py
|
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tokenizers_available, is_vision_available
_import_structure = {
"processing_nougat": ["NougatProcessor"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_nougat_fast"] = ["NougatTokenizerFast"]
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_nougat"] = ["NougatImageProcessor"]
if TYPE_CHECKING:
from .processing_nougat import NougatProcessor
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_nougat_fast import NougatTokenizerFast
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_nougat import NougatImageProcessor
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/nougat/processing_nougat.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for Nougat.
"""
from typing import Dict, List, Optional, Union
from transformers.tokenization_utils_base import PreTokenizedInput, TextInput, TruncationStrategy
from ...processing_utils import ProcessorMixin
from ...utils import PaddingStrategy, TensorType
class NougatProcessor(ProcessorMixin):
r"""
Constructs a Nougat processor which wraps a Nougat image processor and a Nougat tokenizer into a single processor.
[`NougatProcessor`] offers all the functionalities of [`NougatImageProcessor`] and [`NougatTokenizerFast`]. See the
[`~NougatProcessor.__call__`] and [`~NougatProcessor.decode`] for more information.
Args:
image_processor ([`NougatImageProcessor`]):
An instance of [`NougatImageProcessor`]. The image processor is a required input.
tokenizer ([`NougatTokenizerFast`]):
An instance of [`NougatTokenizerFast`]. The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "AutoImageProcessor"
tokenizer_class = "AutoTokenizer"
def __init__(self, image_processor, tokenizer):
super().__init__(image_processor, tokenizer)
self.current_processor = self.image_processor
def __call__(
self,
images=None,
text=None,
do_crop_margin: bool = None,
do_resize: bool = None,
size: Dict[str, int] = None,
resample: "PILImageResampling" = None, # noqa: F821
do_thumbnail: bool = None,
do_align_long_axis: bool = None,
do_pad: bool = None,
do_rescale: bool = None,
rescale_factor: Union[int, float] = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
data_format: Optional["ChannelDimension"] = "channels_first", # noqa: F821
input_data_format: Optional[Union[str, "ChannelDimension"]] = None, # noqa: F821
text_pair: Optional[Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]]] = None,
text_target: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]] = None,
text_pair_target: Optional[
Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]]
] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
is_split_into_words: bool = False,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
):
if images is None and text is None:
raise ValueError("You need to specify either an `images` or `text` input to process.")
if images is not None:
inputs = self.image_processor(
images,
do_crop_margin=do_crop_margin,
do_resize=do_resize,
size=size,
resample=resample,
do_thumbnail=do_thumbnail,
do_align_long_axis=do_align_long_axis,
do_pad=do_pad,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
return_tensors=return_tensors,
data_format=data_format,
input_data_format=input_data_format,
)
if text is not None:
encodings = self.tokenizer(
text,
text_pair=text_pair,
text_target=text_target,
text_pair_target=text_pair_target,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
is_split_into_words=is_split_into_words,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
)
if text is None:
return inputs
elif images is None:
return encodings
else:
inputs["labels"] = encodings["input_ids"]
return inputs
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to NougatTokenizer's [`~PreTrainedTokenizer.batch_decode`]. Please refer
to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to NougatTokenizer's [`~PreTrainedTokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
def post_process_generation(self, *args, **kwargs):
"""
This method forwards all its arguments to NougatTokenizer's [`~PreTrainedTokenizer.post_process_generation`].
Please refer to the docstring of this method for more information.
"""
return self.tokenizer.post_process_generation(*args, **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/nougat/tokenization_nougat_fast.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fast tokenizer class for Nougat.
"""
import re
from functools import partial
from multiprocessing import Pool
from typing import List, Union
import numpy as np
from transformers.tokenization_utils_base import INIT_TOKENIZER_DOCSTRING
from transformers.tokenization_utils_fast import PreTrainedTokenizerFast
from transformers.utils import add_end_docstrings
from ...utils import is_levenshtein_available, is_nltk_available, logging, requires_backends
if is_levenshtein_available():
from Levenshtein import ratio
if is_nltk_available():
import nltk
logger = logging.get_logger(__name__)
INIT_TOKENIZER_DOCSTRING += """
tokenizer_object ([`tokenizers.Tokenizer`]):
A [`tokenizers.Tokenizer`] object from 🤗 tokenizers to instantiate from. See [Using tokenizers from 🤗
tokenizers](../fast_tokenizers) for more information.
tokenizer_file ([`str`]):
A path to a local JSON file representing a previously serialized [`tokenizers.Tokenizer`] object from 🤗
tokenizers.
"""
VOCAB_FILES_NAMES = {"tokenizer_file": "tokenizer.json"}
def markdown_compatible(text: str) -> str:
"""
Make text compatible with Markdown formatting.
This function makes various text formatting adjustments to make it compatible with Markdown.
Args:
text (`str`):
The input text to be made Markdown-compatible.
Returns:
`str`: The Markdown-compatible text.
"""
# equation tag
# Replace lines that start with a pattern like (decimal) \[some text\] with \[[some text] \tag{decimal}\].
text = re.sub(r"^\(([\d.]+[a-zA-Z]?)\) \\\[(.+?)\\\]$", r"\[\2 \\tag{\1}\]", text, flags=re.M)
# Replace lines that start with a pattern like \[some text\] (decimal) with \[[some text] \tag{decimal}\].
text = re.sub(r"^\\\[(.+?)\\\] \(([\d.]+[a-zA-Z]?)\)$", r"\[\1 \\tag{\2}\]", text, flags=re.M)
# Replace lines that start with a pattern like \[some text\] (digits) \[another text\] with \[[some text] \tag{digits}\] [another text].
text = re.sub(
r"^\\\[(.+?)\\\] \(([\d.]+[a-zA-Z]?)\) (\\\[.+?\\\])$",
r"\[\1 \\tag{\2}\] \3",
text,
flags=re.M,
)
# multi line
text = text.replace(r"\. ", ". ")
# bold formatting
text = text.replace(r"\bm{", r"\mathbf{").replace(r"{\\bm ", r"\mathbf{")
text = re.sub(r"\\mbox{ ?\\boldmath\$(.*?)\$}", r"\\mathbf{\1}", text)
# Reformat urls (http, ftp and https only) to markdown [url](url) clickable format
text = re.sub(
r"((?:http|ftp|https):\/\/(?:[\w_-]+(?:(?:\.[\w_-]+)+))(?:[\w.,@?^=%&:\/~+#-]*[\w@?^=%&\/~+#-]))",
r"[\1](\1)",
text,
)
# algorithms
text = re.sub(r"```\s*(.+?)\s*```", r"```\n\1\n```", text, flags=re.S)
return text
def normalize_list_like_lines(generation):
"""
Normalize lines in the given text that resemble list items. The function looks for lines that start optionally with
'-' or '*', possibly followed by Roman numerals or digits indicating nesting levels. The function reformats such
lines to make them more structured.
Args:
generation (str): The input text containing lines that need to be normalized.
Returns:
str: The input text with the list-like lines normalized.
Note:
The function uses regular expressions to identify and reformat the list-like lines. The patterns capture
optional bullet points, nesting levels indicated by numerals, and the actual list item content. The
normalization adjusts the bullet point style and nesting levels based on the captured patterns.
"""
# This matches lines starting with - or *, not followed by - or * (lists)
# that are then numbered by digits \d or roman numerals (one or more)
# and then, optional additional numbering of this line is captured
# this is then fed to re.finditer.
pattern = r"(?:^)(-|\*)?(?!-|\*) ?((?:\d|[ixv])+ )?.+? (-|\*) (((?:\d|[ixv])+)\.(\d|[ixv]) )?.*(?:$)"
for match in reversed(list(re.finditer(pattern, generation, flags=re.I | re.M))):
start, stop = match.span()
delim = match.group(3) + " "
splits = match.group(0).split(delim)
replacement = ""
if match.group(1) is not None:
splits = splits[1:]
delim1 = match.group(1) + " "
else:
delim1 = ""
continue # Skip false positives
pre, post = generation[:start], generation[stop:]
for i, item in enumerate(splits):
level = 0
potential_numeral, _, rest = item.strip().partition(" ")
if not rest:
continue
# Infer current nesting level based on detected numbering
if re.match(r"^[\dixv]+((?:\.[\dixv])?)+$", potential_numeral, flags=re.I | re.M):
level = potential_numeral.count(".")
replacement += (
("\n" if i > 0 else "") + ("\t" * level) + (delim if i > 0 or start == 0 else delim1) + item.strip()
)
if post == "":
post = "\n"
generation = pre + replacement + post
return generation
def find_next_punctuation(text: str, start_idx=0):
"""
Find the index of the next punctuation mark.
Args:
text (`str`):
String to examine
start_idx (`int`, *optional*)
Index where to start
"""
for i in range(start_idx, len(text)):
if text[i] in [".", "?", "!", "\n"]:
return i
return None
def truncate_repetitions(text: str, min_len: int = 30) -> str:
"""
Attempt to truncate repeating segments in the input string.
This function looks for the longest repeating substring at the end of the input string and truncates it to appear
only once. To be considered for removal, repetitions need to be continuous.
Args:
text (`str`):
The input raw prediction to be truncated.
min_len (int):
The minimum length of the repeating segment.
Returns:
`str`: The input string with repeated segments truncated.
"""
text_lower = text.lower()
text_length = len(text_lower)
if text_length < 2 * min_len:
return text
# try to find a length at which the tail is repeating
max_repetition_length = None
for repetition_length in range(min_len, int(text_length / 2)):
# check if there is a repetition at the end
same = True
for i in range(0, repetition_length):
if text_lower[text_length - repetition_length - i - 1] != text_lower[text_length - i - 1]:
same = False
break
if same:
max_repetition_length = repetition_length
if max_repetition_length is None:
return text
lcs = text_lower[-max_repetition_length:]
# remove all but the last repetition
substituted_text = text
substituted_text_lower = text_lower
while substituted_text_lower.endswith(lcs):
substituted_text = substituted_text[:-max_repetition_length]
substituted_text_lower = substituted_text_lower[:-max_repetition_length]
# this is the tail with the repetitions
repeating_tail = text_lower[len(substituted_text_lower) :]
# add until next punctuation and make sure last sentence is not repeating
substituted_text_lower_out = substituted_text_lower
while True:
sentence_end = find_next_punctuation(text_lower, len(substituted_text_lower_out))
sentence_start = find_next_punctuation(text_lower[::-1], len(substituted_text_lower_out))
if sentence_end and sentence_start:
sentence = text_lower[sentence_start:sentence_end]
substituted_text_lower_out = text_lower[: sentence_end + 1]
if sentence in repeating_tail:
break
else:
break
text_out = text[: len(substituted_text_lower_out)]
return text_out
def remove_numbers(lines):
def _clean(s):
return re.sub(r"(?:[\d_]|\*\*)", "", s).strip()
if isinstance(lines, str):
return _clean(lines)
out = []
for l in lines:
out.append(_clean(l))
return out
def get_slices(lines, clean_lines):
"""
Get slices of text based on specific criteria within the lines.
This function identifies and returns slices of text from the input lines based on certain conditions.
These conditions were chosen by the Nougat authors:
- The slice is less than 200 characters long.
- The slice is more than 3 characters long.
- The slice does not start with "[MISSING_PAGE".
- The slice is either the same as the next slice or the ratio of the two in terms of Levensthein distance is
greater than 0.9.
Args:
lines (`List[str]`):
The list of lines containing the text.
clean_lines (`List[str]`):
A cleaned version of the text (without numbers).
Returns:
`List[tuple]`: A list of tuples representing the start and end indices of text slices.
"""
indices = np.zeros(len(lines))
for i in range(len(lines) - 1):
j = i + 1
while not clean_lines[j] and j < len(lines) - 1:
j += 1
if (
len(clean_lines[i]) < 200
and len(clean_lines[i]) > 3
and len(clean_lines[j]) < 200
and len(clean_lines[j]) > 3
and not clean_lines[i].startswith("[MISSING_PAGE")
and (clean_lines[i] == clean_lines[j] or ratio(clean_lines[i], clean_lines[j]) > 0.9)
):
indices[i:j] = 1
ids = np.where(indices)[0]
slices = []
if len(ids) == 0:
return slices
j0 = 0
for j, x in enumerate(np.diff(ids) > 3):
if x:
slices.append((ids[j0], ids[j] + 2))
j0 = j + 1
slices.append((ids[j0], ids[-1] + 2))
return [sli for sli in slices if sli[1] - sli[0] > 15]
def remove_slice_from_lines(lines, clean_text, slice) -> str:
"""
Remove a slice of text from the lines based on specific criteria.
This function identifies a slice of text within the lines and removes it based on certain conditions.
Args:
lines (list of str): The list of lines containing the text.
clean_text (list of str): A cleaned version of the text (without numbers).
slice (tuple): A tuple representing the start and end indices of the slice to be removed.
Returns:
str: The removed slice of text as a single string.
"""
base = clean_text[slice[0]]
section = list(slice)
check_start_flag = False
# backwards pass, at most 5 lines
for line_idx in range(max(0, slice[0] - 1), max(0, slice[0] - 5), -1):
if not lines[line_idx]:
continue
if lines[line_idx] == "## References":
section[0] = line_idx
break
elif ratio(base, remove_numbers(lines[line_idx])) < 0.9:
section[0] = line_idx + 1
potential_ref = remove_numbers(lines[max(0, line_idx - 1)].partition("* [")[-1])
if len(potential_ref) >= 0.75 * len(base) and ratio(base, potential_ref) < 0.9:
section[0] = line_idx
check_start_flag = True
break
# forward pass, at most 5 lines
for line_idx in range(min(len(lines), slice[1]), min(len(lines), slice[1] + 5)):
if ratio(base, remove_numbers(lines[line_idx])) < 0.9:
section[1] = line_idx
break
if len(lines) <= section[1]:
section[1] = len(lines) - 1
to_delete = "\n".join(lines[section[0] : section[1] + 1])
# cut off next page content
itera, iterb = enumerate(lines[section[1] - 1]), enumerate(lines[section[1]])
while True:
try:
(ia, a) = next(itera)
while a.isnumeric():
(ia, a) = next(itera)
(ib, b) = next(iterb)
while b.isnumeric():
(ib, b) = next(iterb)
if a != b:
break
except StopIteration:
break
if check_start_flag and "* [" in to_delete:
to_delete = "* [" + to_delete.partition("* [")[-1]
try:
delta = len(lines[section[1]]) - ib - 1
if delta > 0:
to_delete = to_delete[:-delta]
except UnboundLocalError:
pass
return to_delete.strip()
@add_end_docstrings(INIT_TOKENIZER_DOCSTRING)
class NougatTokenizerFast(PreTrainedTokenizerFast):
"""
Fast tokenizer for Nougat (backed by HuggingFace tokenizers library).
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods. This class mainly adds Nougat-specific
methods for postprocessing the generated text.
Args:
vocab_file (`str`, *optional*):
[SentencePiece](https://github.com/google/sentencepiece) file (generally has a .model extension) that
contains the vocabulary necessary to instantiate a tokenizer.
tokenizer_file (`str`, *optional*):
[tokenizers](https://github.com/huggingface/tokenizers) file (generally has a .json extension) that
contains everything needed to load the tokenizer.
clean_up_tokenization_spaces (`str`, *optional*, defaults to `False`):
Wether to cleanup spaces after decoding, cleanup consists in removing potential artifacts like extra
spaces.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
bos_token (`str`, *optional*, defaults to `"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
eos_token (`str`, *optional*, defaults to `"</s>"`):
The end of sequence token.
pad_token (`str`, *optional*, defaults to `"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = None
def __init__(
self,
vocab_file=None,
tokenizer_file=None,
clean_up_tokenization_spaces=False,
unk_token="<unk>",
bos_token="<s>",
eos_token="</s>",
pad_token="<pad>",
**kwargs,
):
super().__init__(
vocab_file=vocab_file,
tokenizer_file=tokenizer_file,
clean_up_tokenization_spaces=clean_up_tokenization_spaces,
unk_token=unk_token,
bos_token=bos_token,
eos_token=eos_token,
pad_token=pad_token,
**kwargs,
)
self.vocab_file = vocab_file
def remove_hallucinated_references(self, text: str) -> str:
"""
Remove hallucinated or missing references from the text.
This function identifies and removes references that are marked as missing or hallucinated from the input text.
Args:
text (`str`):
The input text containing references.
Returns:
`str`: The text with hallucinated references removed.
"""
lines = text.split("\n")
if len(lines) == 0:
return ""
clean_lines = remove_numbers(lines)
slices = get_slices(lines, clean_lines)
to_delete = []
for slice in slices:
to_delete.append(remove_slice_from_lines(lines, clean_lines, slice))
for to_delete in reversed(to_delete):
text = text.replace(to_delete, "\n\n[MISSING_PAGE_POST]\n\n")
text = re.sub(
r"## References\n+\[MISSING_PAGE_POST(:\d+)?\]",
"\n\n[MISSING_PAGE_POST\\1]",
text,
)
return text
def correct_tables(self, generation: str) -> str:
"""
Takes a generated string and fixes tables/tabulars to make them match the markdown format needed.
Args:
generation (str): The generated text to be postprocessed.
Returns:
str: The postprocessed text.
Example:
```python
correct_tables("\\begin{table} \\begin{tabular}{l l} & \\ \\end{tabular} \\end{table}")
"\\begin{table}\n\\begin{tabular}{l l} & \\ \\end{tabular}\n\\end{table}"
```
"""
# remove obvious wrong tables
for l in generation.split("\n"):
if l.count("\\begin{tabular}") > 15 or l.count("\\multicolumn") > 60 or l.count("&") > 400:
generation = generation.replace(l, "")
# whitespace corrections
generation = generation.replace("\\begin{table} \\begin{tabular}", "\\begin{table}\n\\begin{tabular}")
generation = generation.replace("\\end{tabular} \\end{table}", "\\end{tabular}\n\\end{table}")
generation = generation.replace("\\end{table} Tab", "\\end{table}\nTab")
generation = re.sub(r"(^.+)\\begin{tab", r"\1\n\\begin{tab", generation, flags=re.M)
# Remove left-aligned empty LaTeX tabular blocks.
generation = generation.replace(r"\begin{tabular}{l l} & \\ \end{tabular}", "")
# Remove tabulars with just 2 newline characters.
generation = generation.replace("\\begin{tabular}{}\n\n\\end{tabular}", "")
return generation
def post_process_single(self, generation: str, fix_markdown: bool = True) -> str:
"""
Postprocess a single generated text. Regular expressions used here are taken directly from the Nougat article
authors. These expressions are commented for clarity and tested end-to-end in most cases.
Args:
generation (str): The generated text to be postprocessed.
fix_markdown (bool, optional): Whether to perform Markdown formatting fixes. Default is True.
Returns:
str: The postprocessed text.
"""
generation = re.sub(
r"(?:\n|^)#+ \d*\W? ?(.{100,})", r"\n\1", generation
) # too long section titles probably are none
generation = generation.strip()
# Remove LaTeX left margin tag
generation = generation.replace("\n* [leftmargin=*]\n", "\n")
# Remove lines with markdown headings starting with #, with numerals,
# and possibly roman numerals with trailing spaces and newlines
generation = re.sub(r"^#+ (?:\.?(?:\d|[ixv])+)*\s*(?:$|\n\s*)", "", generation, flags=re.M)
# most likely hallucinated titles
lines = generation.split("\n")
if lines[-1].startswith("#") and lines[-1].lstrip("#").startswith(" ") and len(lines) > 1:
logger.info("Likely hallucinated title at the end of the page: " + lines[-1])
generation = "\n".join(lines[:-1])
# obvious repetition detection
generation = truncate_repetitions(generation)
# Reference corrections
generation = self.remove_hallucinated_references(generation)
# Remove lines starting with asterisks and numbers like "*[1]" and followed by capital letters and periods (ie too long references)
generation = re.sub(r"^\* \[\d+\](\s?[A-W]\.+\s?){10,}.*$", "", generation, flags=re.M)
# Remove empty brackets after a reference number in brackets. *[12][]ABC will become *[12]ABC
generation = re.sub(r"^(\* \[\d+\])\[\](.*)$", r"\1\2", generation, flags=re.M)
# Remove single characters before or after 2 new lines
generation = re.sub(r"(^\w\n\n|\n\n\w$)", "", generation)
# pmc math artifact correction
generation = re.sub(
r"([\s.,()])_([a-zA-Z0-9])__([a-zA-Z0-9]){1,3}_([\s.,:()])",
r"\1\(\2_{\3}\)\4",
generation,
)
generation = re.sub(r"([\s.,\d])_([a-zA-Z0-9])_([\s.,\d;])", r"\1\(\2\)\3", generation)
# footnote mistakes
generation = re.sub(
r"(\nFootnote .*?:) (?:footnotetext|thanks):\W*(.*(?:\n\n|$))",
r"\1 \2",
generation,
)
# TODO Come up with footnote formatting inside a table
generation = re.sub(r"\[FOOTNOTE:.+?\](.*?)\[ENDFOOTNOTE\]", "", generation)
# itemize post processing
generation = normalize_list_like_lines(generation)
if generation.endswith((".", "}")):
generation += "\n\n"
if re.match(r"[A-Z0-9,;:]$", generation):
# add space in case it there is a comma or word ending
generation += " "
elif generation.startswith(("#", "**", "\\begin")):
generation = "\n\n" + generation
elif generation.split("\n")[-1].startswith(("#", "Figure", "Table")):
generation = generation + "\n\n"
else:
try:
last_word = generation.split(" ")[-1]
if last_word in nltk.corpus.words.words():
generation += " "
except LookupError:
# add space just in case. Will split words but better than concatenating them
generation += " "
# table corrections
generation = self.correct_tables(generation)
# Remove optional, empty square brackets after begin{array}
generation = generation.replace("\\begin{array}[]{", "\\begin{array}{")
# Remove empty or malformed LaTeX tabular blocks with 2 or more columns specified, with spaces and ampersands.
generation = re.sub(
r"\\begin{tabular}{([clr ]){2,}}\s*[& ]*\s*(\\\\)? \\end{tabular}",
"",
generation,
)
# Remove lines containing "S.A.B." one or more times. Was included in Nougat's code.
generation = re.sub(r"(\*\*S\. A\. B\.\*\*\n+){2,}", "", generation)
# Remove markdown-style headers that are incomplete or empty on multiple lines.
generation = re.sub(r"^#+( [\[\d\w])?$", "", generation, flags=re.M)
# Remove lines with just one period.
generation = re.sub(r"^\.\s*$", "", generation, flags=re.M)
# Replace instances of three or more newlines with just two newlines.
generation = re.sub(r"\n{3,}", "\n\n", generation)
if fix_markdown:
return markdown_compatible(generation)
else:
return generation
def post_process_generation(
self,
generation: Union[str, List[str]],
fix_markdown: bool = True,
num_workers: int = None,
) -> Union[str, List[str]]:
"""
Postprocess a generated text or a list of generated texts.
This function can be used to perform postprocessing on generated text, such as fixing Markdown formatting.
Postprocessing is quite slow so it is recommended to use multiprocessing to speed up the process.
Args:
generation (Union[str, List[str]]):
The generated text or a list of generated texts.
fix_markdown (`bool`, *optional*, defaults to `True`):
Whether to perform Markdown formatting fixes.
num_workers (`int`, *optional*):
Optional number of workers to pass to leverage multiprocessing (postprocessing several texts in
parallel).
Returns:
Union[str, List[str]]: The postprocessed text or list of postprocessed texts.
"""
requires_backends(self, ["nltk", "levenshtein"])
if isinstance(generation, list):
if num_workers is not None and isinstance(num_workers, int):
with Pool(num_workers) as p:
return p.map(partial(self.post_process_single, fix_markdown=fix_markdown), generation)
else:
return [self.post_process_single(s, fix_markdown=fix_markdown) for s in generation]
else:
return self.post_process_single(generation, fix_markdown=fix_markdown)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/processing_blip.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for Blip.
"""
from typing import List, Optional, Union
from ...image_utils import ImageInput
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding, PaddingStrategy, PreTokenizedInput, TextInput, TruncationStrategy
from ...utils import TensorType
class BlipProcessor(ProcessorMixin):
r"""
Constructs a BLIP processor which wraps a BERT tokenizer and BLIP image processor into a single processor.
[`BlipProcessor`] offers all the functionalities of [`BlipImageProcessor`] and [`BertTokenizerFast`]. See the
docstring of [`~BlipProcessor.__call__`] and [`~BlipProcessor.decode`] for more information.
Args:
image_processor (`BlipImageProcessor`):
An instance of [`BlipImageProcessor`]. The image processor is a required input.
tokenizer (`BertTokenizerFast`):
An instance of ['BertTokenizerFast`]. The tokenizer is a required input.
"""
attributes = ["image_processor", "tokenizer"]
image_processor_class = "BlipImageProcessor"
tokenizer_class = ("BertTokenizer", "BertTokenizerFast")
def __init__(self, image_processor, tokenizer):
tokenizer.return_token_type_ids = False
super().__init__(image_processor, tokenizer)
self.current_processor = self.image_processor
def __call__(
self,
images: ImageInput = None,
text: Union[TextInput, PreTokenizedInput, List[TextInput], List[PreTokenizedInput]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TruncationStrategy] = None,
max_length: Optional[int] = None,
stride: int = 0,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_token_type_ids: bool = False,
return_length: bool = False,
verbose: bool = True,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchEncoding:
"""
This method uses [`BlipImageProcessor.__call__`] method to prepare image(s) for the model, and
[`BertTokenizerFast.__call__`] to prepare text for the model.
Please refer to the docstring of the above two methods for more information.
"""
if images is None and text is None:
raise ValueError("You have to specify either images or text.")
# Get only text
if images is None:
self.current_processor = self.tokenizer
text_encoding = self.tokenizer(
text=text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_token_type_ids=return_token_type_ids,
return_length=return_length,
verbose=verbose,
return_tensors=return_tensors,
**kwargs,
)
return text_encoding
# add pixel_values
encoding_image_processor = self.image_processor(images, return_tensors=return_tensors)
if text is not None:
text_encoding = self.tokenizer(
text=text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
stride=stride,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_token_type_ids=return_token_type_ids,
return_length=return_length,
verbose=verbose,
return_tensors=return_tensors,
**kwargs,
)
else:
text_encoding = None
if text_encoding is not None:
encoding_image_processor.update(text_encoding)
return encoding_image_processor
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to BertTokenizerFast's [`~PreTrainedTokenizer.batch_decode`]. Please
refer to the docstring of this method for more information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to BertTokenizerFast's [`~PreTrainedTokenizer.decode`]. Please refer to
the docstring of this method for more information.
"""
return self.tokenizer.decode(*args, **kwargs)
@property
def model_input_names(self):
tokenizer_input_names = self.tokenizer.model_input_names
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(tokenizer_input_names + image_processor_input_names))
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/convert_blip_original_pytorch_to_hf.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import re
import requests
import torch
# git clone https://github.com/salesforce/BLIP.git
from models.blip import blip_decoder
from models.blip_itm import blip_itm
from models.blip_vqa import blip_vqa
from PIL import Image
from torchvision import transforms
from torchvision.transforms.functional import InterpolationMode
from transformers import (
BertTokenizer,
BlipConfig,
BlipForConditionalGeneration,
BlipForImageTextRetrieval,
BlipForQuestionAnswering,
)
def load_demo_image(image_size, device):
img_url = "https://storage.googleapis.com/sfr-vision-language-research/BLIP/demo.jpg"
raw_image = Image.open(requests.get(img_url, stream=True).raw).convert("RGB")
transform = transforms.Compose(
[
transforms.Resize((image_size, image_size), interpolation=InterpolationMode.BICUBIC),
transforms.ToTensor(),
transforms.Normalize((0.48145466, 0.4578275, 0.40821073), (0.26862954, 0.26130258, 0.27577711)),
]
)
image = transform(raw_image).unsqueeze(0).to(device)
return image
def rename_key(key):
if "visual_encoder" in key:
key = re.sub("visual_encoder*", "vision_model.encoder", key)
if "blocks" in key:
key = re.sub(r"blocks", "layers", key)
if "attn" in key:
key = re.sub(r"attn", "self_attn", key)
if "norm1" in key:
key = re.sub(r"norm1", "layer_norm1", key)
if "norm2" in key:
key = re.sub(r"norm2", "layer_norm2", key)
if "encoder.norm" in key:
key = re.sub(r"encoder.norm", "post_layernorm", key)
if "encoder.patch_embed.proj" in key:
key = re.sub(r"encoder.patch_embed.proj", "embeddings.patch_embedding", key)
if "encoder.pos_embed" in key:
key = re.sub(r"encoder.pos_embed", "embeddings.position_embedding", key)
if "encoder.cls_token" in key:
key = re.sub(r"encoder.cls_token", "embeddings.class_embedding", key)
if "self_attn" in key:
key = re.sub(r"self_attn.proj", "self_attn.projection", key)
return key
@torch.no_grad()
def convert_blip_checkpoint(pytorch_dump_folder_path, config_path=None):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = BlipConfig.from_pretrained(config_path)
else:
config = BlipConfig(projection_dim=512, text_config={}, vision_config={})
hf_model = BlipForConditionalGeneration(config).eval()
model_url = "https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_capfilt_large.pth"
pt_model = blip_decoder(pretrained=model_url, image_size=384, vit="base")
pt_model = pt_model.eval()
modified_state_dict = pt_model.state_dict()
for key in modified_state_dict.copy():
value = modified_state_dict.pop(key)
renamed_key = rename_key(key)
modified_state_dict[renamed_key] = value
hf_model.load_state_dict(modified_state_dict)
image_size = 384
image = load_demo_image(image_size=image_size, device="cpu")
tokenizer = BertTokenizer.from_pretrained("google-bert/bert-base-uncased")
input_ids = tokenizer(["a picture of"]).input_ids
out = hf_model.generate(image, input_ids)
assert out[0].tolist() == [30522, 1037, 3861, 1997, 1037, 2450, 3564, 2006, 1996, 3509, 2007, 2014, 3899, 102]
out = hf_model.generate(image)
assert out[0].tolist() == [30522, 1037, 2450, 3564, 2006, 1996, 3509, 2007, 2014, 3899, 102]
if pytorch_dump_folder_path is not None:
hf_model.save_pretrained(pytorch_dump_folder_path)
# model_url = 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_vqa.pth'
model_url = (
"https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_vqa_capfilt_large.pth"
)
vqa_model = blip_vqa(pretrained=model_url, image_size=image_size, vit="base")
vqa_model.eval()
modified_state_dict = vqa_model.state_dict()
for key in modified_state_dict.copy():
value = modified_state_dict.pop(key)
renamed_key = rename_key(key)
modified_state_dict[renamed_key] = value
hf_vqa_model = BlipForQuestionAnswering(config)
hf_vqa_model.load_state_dict(modified_state_dict)
question = ["How many dogs are in this image?"]
question_input_ids = tokenizer(question, return_tensors="pt").input_ids
answer = hf_vqa_model.generate(question_input_ids, image)
print(tokenizer.decode(answer[0]))
assert tokenizer.decode(answer[0]) == "[UNK] 1 [SEP]"
if pytorch_dump_folder_path is not None:
hf_vqa_model.save_pretrained(pytorch_dump_folder_path + "_vqa")
model_url = "https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_retrieval_coco.pth"
itm_model = blip_itm(pretrained=model_url, image_size=image_size, vit="base")
itm_model.eval()
modified_state_dict = itm_model.state_dict()
for key in modified_state_dict.copy():
value = modified_state_dict.pop(key)
renamed_key = rename_key(key)
modified_state_dict[renamed_key] = value
hf_itm_model = BlipForImageTextRetrieval(config)
question = ["A picture of a woman with a dog sitting in a beach"]
question_input_ids = tokenizer(
question,
return_tensors="pt",
padding="max_length",
truncation=True,
max_length=35,
).input_ids
hf_itm_model.load_state_dict(modified_state_dict)
hf_itm_model.eval()
out_itm = hf_itm_model(question_input_ids, image, use_itm_head=True)
out = hf_itm_model(question_input_ids, image, use_itm_head=False)
assert out[0].item() == 0.2110687494277954
assert torch.nn.functional.softmax(out_itm[0], dim=1)[:, 1].item() == 0.45698845386505127
if pytorch_dump_folder_path is not None:
hf_itm_model.save_pretrained(pytorch_dump_folder_path + "_itm")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument("--config_path", default=None, type=str, help="Path to hf config.json of model to convert")
args = parser.parse_args()
convert_blip_checkpoint(args.checkpoint_path, args.pytorch_dump_folder_path, args.config_path)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/modeling_blip_text.py
|
# coding=utf-8
# Copyright 2022 The Salesforce Team Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the BSD-3-clause license (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://opensource.org/licenses/BSD-3-Clause
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import Tensor, device, nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
)
from ...modeling_utils import (
PreTrainedModel,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from ...utils import logging
from .configuration_blip import BlipTextConfig
logger = logging.get_logger(__name__)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L52
class BlipTextEmbeddings(nn.Module):
"""Construct the embeddings from word and position embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.config = config
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
past_key_values_length: int = 0,
) -> torch.Tensor:
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
if inputs_embeds is None:
input_ids = input_ids.to(self.word_embeddings.weight.device)
inputs_embeds = self.word_embeddings(input_ids)
embeddings = inputs_embeds
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L97
class BlipTextSelfAttention(nn.Module):
def __init__(self, config, is_cross_attention):
super().__init__()
self.config = config
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention heads (%d)"
% (config.hidden_size, config.num_attention_heads)
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
if is_cross_attention:
self.key = nn.Linear(config.encoder_hidden_size, self.all_head_size)
self.value = nn.Linear(config.encoder_hidden_size, self.all_head_size)
else:
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
def save_attn_gradients(self, attn_gradients):
self.attn_gradients = attn_gradients
def get_attn_gradients(self):
return self.attn_gradients
def save_attention_map(self, attention_map):
self.attention_map = attention_map
def get_attention_map(self):
return self.attention_map
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BlipTextModel forward() function)
attention_scores = attention_scores + attention_mask.to(attention_scores.device)
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs_dropped = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs_dropped = attention_probs_dropped * head_mask
context_layer = torch.matmul(attention_probs_dropped, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput with Bert -> BlipText
class BlipTextSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#242
class BlipTextAttention(nn.Module):
def __init__(self, config, is_cross_attention=False):
super().__init__()
self.self = BlipTextSelfAttention(config, is_cross_attention)
self.output = BlipTextSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert -> BlipText
class BlipTextIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert -> BlipText
class BlipTextOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BlipTextLayer(nn.Module):
def __init__(self, config, layer_num):
super().__init__()
self.config = config
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = BlipTextAttention(config)
self.layer_num = layer_num
if self.config.is_decoder:
self.crossattention = BlipTextAttention(config, is_cross_attention=self.config.is_decoder)
self.intermediate = BlipTextIntermediate(config)
self.output = BlipTextOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
if encoder_hidden_states is not None:
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
output_attentions=output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L386
class BlipTextEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([BlipTextLayer(config, i) for i in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.is_decoder else None
next_decoder_cache = () if use_cache else None
for i in range(self.config.num_hidden_layers):
layer_module = self.layer[i]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler with Bert->BlipText
class BlipTextPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert->BlipText
class BlipTextPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLMPredictionHead with Bert->BlipText
class BlipTextLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = BlipTextPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOnlyMLMHead with Bert->BlipText
class BlipTextOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = BlipTextLMPredictionHead(config)
def forward(self, sequence_output: torch.Tensor) -> torch.Tensor:
prediction_scores = self.predictions(sequence_output)
return prediction_scores
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L548
class BlipTextPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BlipTextConfig
base_model_prefix = "bert"
_no_split_modules = []
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Embedding)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
# Adapted from https://github.com/salesforce/BLIP/blob/3a29b7410476bf5f2ba0955827390eb6ea1f4f9d/models/med.py#L571
class BlipTextModel(BlipTextPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin. argument and `is_decoder` set to `True`; an
`encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = BlipTextEmbeddings(config)
self.encoder = BlipTextEncoder(config)
self.pooler = BlipTextPooler(config) if add_pooling_layer else None
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
# Copied from transformers.models.bert.modeling_bert.BertModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
def get_extended_attention_mask(
self, attention_mask: Tensor, input_shape: Tuple[int], device: device, is_decoder: bool
) -> Tensor:
"""
Makes broadcastable attention and causal masks so that future and masked tokens are ignored.
Arguments:
attention_mask (`torch.Tensor`):
Mask with ones indicating tokens to attend to, zeros for tokens to ignore.
input_shape (`Tuple[int]`):
The shape of the input to the model.
device (`torch.device`):
The device of the input to the model.
Returns:
`torch.Tensor` The extended attention mask, with a the same dtype as `attention_mask.dtype`.
"""
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if attention_mask.dim() == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.dim() == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if is_decoder:
batch_size, seq_length = input_shape
seq_ids = torch.arange(seq_length, device=device)
causal_mask = seq_ids[None, None, :].repeat(batch_size, seq_length, 1) <= seq_ids[None, :, None]
# in case past_key_values are used we need to add a prefix ones mask to the causal mask
# causal and attention masks must have same type with pytorch version < 1.3
causal_mask = causal_mask.to(attention_mask.dtype)
if causal_mask.shape[1] < attention_mask.shape[1]:
prefix_seq_len = attention_mask.shape[1] - causal_mask.shape[1]
causal_mask = torch.cat(
[
torch.ones(
(batch_size, seq_length, prefix_seq_len), device=device, dtype=causal_mask.dtype
),
causal_mask,
],
axis=-1,
)
extended_attention_mask = causal_mask[:, None, :, :] * attention_mask[:, None, None, :]
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for input_ids (shape {}) or attention_mask (shape {})".format(
input_shape, attention_mask.shape
)
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = extended_attention_mask.to(dtype=self.dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
return extended_attention_mask
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
is_decoder: Optional[bool] = False,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
batch_size, seq_length = input_shape
device = input_ids.device
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
device = inputs_embeds.device
elif encoder_embeds is not None:
input_shape = encoder_embeds.size()[:-1]
batch_size, seq_length = input_shape
device = encoder_embeds.device
else:
raise ValueError("You have to specify either input_ids or inputs_embeds or encoder_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length))).to(device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(
attention_mask, input_shape, device, is_decoder
)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_hidden_states is not None:
if isinstance(encoder_hidden_states, list):
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states[0].size()
else:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if isinstance(encoder_attention_mask, list):
encoder_extended_attention_mask = [self.invert_attention_mask(mask) for mask in encoder_attention_mask]
elif encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
if encoder_embeds is None:
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
else:
embedding_output = encoder_embeds
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L811
class BlipTextLMHeadModel(BlipTextPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bert = BlipTextModel(config, add_pooling_layer=False)
self.cls = BlipTextOnlyMLMHead(config)
self.label_smoothing = config.label_smoothing
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.Tensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
return_logits: Optional[bool] = False,
is_decoder: Optional[bool] = True,
reduction: Optional[str] = "mean",
) -> Union[Tuple[torch.Tensor], CausalLMOutputWithCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor`, *optional*): Sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention if the model is
configured as a decoder.
encoder_attention_mask (`torch.FloatTensor`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (`torch.LongTensor`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels n `[0, ..., config.vocab_size]`
past_key_values (`tuple(tuple(torch.FloatTensor))`, *optional*):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
is_decoder=is_decoder,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
if return_logits:
return prediction_scores[:, :-1, :].contiguous()
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous().to(shifted_prediction_scores.device)
loss_fct = CrossEntropyLoss(reduction=reduction, label_smoothing=self.label_smoothing)
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if reduction == "none":
lm_loss = lm_loss.view(prediction_scores.size(0), -1).sum(1)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, attention_mask=None, **model_kwargs):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
past_length = past_key_values[0][0].shape[2]
# Some generation methods already pass only the last input ID
if input_ids.shape[1] > past_length:
remove_prefix_length = past_length
else:
# Default to old behavior: keep only final ID
remove_prefix_length = input_ids.shape[1] - 1
input_ids = input_ids[:, remove_prefix_length:]
return {
"input_ids": input_ids,
"attention_mask": attention_mask,
"past_key_values": past_key_values,
"encoder_hidden_states": model_kwargs.get("encoder_hidden_states", None),
"encoder_attention_mask": model_kwargs.get("encoder_attention_mask", None),
"is_decoder": True,
}
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past),
)
return reordered_past
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/modeling_tf_blip_text.py
|
# coding=utf-8
# Copyright 2023 The Salesforce Team Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the BSD-3-clause license (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://opensource.org/licenses/BSD-3-Clause
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
import math
from typing import Optional, Tuple
import tensorflow as tf
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFCausalLMOutputWithCrossAttentions,
)
from ...modeling_tf_utils import (
TFModelInputType,
TFPreTrainedModel,
get_initializer,
get_tf_activation,
keras,
keras_serializable,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, invert_attention_mask, stable_softmax
from ...utils import add_start_docstrings_to_model_forward, logging
from .configuration_blip import BlipTextConfig
logger = logging.get_logger(__name__)
BLIP_TEXT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoProcessor`]. See [`BlipProcessor.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L52
class TFBlipTextEmbeddings(keras.layers.Layer):
"""Construct the embeddings from word and position embeddings."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.word_embeddings = keras.layers.Embedding(
config.vocab_size,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="word_embeddings",
)
self.position_embeddings = keras.layers.Embedding(
config.max_position_embeddings,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="position_embeddings",
)
# self.LayerNorm is not snake-cased to stick with PyTorch model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob, name="dropout")
self.position_ids = tf.expand_dims(tf.range(config.max_position_embeddings), 0)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.config = config
def call(self, input_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0, training=None):
if input_ids is not None:
input_shape = tf.shape(input_ids)
else:
input_shape = tf.shape(inputs_embeds)[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.word_embeddings(input_ids)
embeddings = inputs_embeds
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings, training=training)
return embeddings
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "word_embeddings", None) is not None:
with tf.name_scope(self.word_embeddings.name):
self.word_embeddings.build(None)
if getattr(self, "position_embeddings", None) is not None:
with tf.name_scope(self.position_embeddings.name):
self.position_embeddings.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
if getattr(self, "dropout", None) is not None:
with tf.name_scope(self.dropout.name):
self.dropout.build(None)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L97
class TFBlipTextSelfAttention(keras.layers.Layer):
def __init__(self, config, is_cross_attention, **kwargs):
super().__init__(**kwargs)
self.config = config
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention heads (%d)"
% (config.hidden_size, config.num_attention_heads)
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = keras.layers.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = keras.layers.Embedding(
2 * config.max_position_embeddings - 1, self.attention_head_size
)
self.is_cross_attention = is_cross_attention
def transpose_for_scores(self, x):
new_x_shape = tf.concat(
[tf.shape(x)[:-1], tf.constant([self.num_attention_heads, self.attention_head_size], dtype=tf.int32)],
axis=0,
)
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, perm=(0, 2, 1, 3))
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=None,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = shape_list(hidden_states)[1]
position_ids_l = tf.expand_dims(tf.range(seq_length, dtype=tf.int64, device=hidden_states.device), 1)
position_ids_r = tf.expand_dims(tf.range(seq_length, dtype=tf.int64, device=hidden_states.device), 0)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = tf.cast(positional_embedding, query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = tf.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BlipTextModel forward() function)
attention_scores = attention_scores + tf.cast(attention_mask, attention_scores.dtype)
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs_dropped = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs_dropped = attention_probs_dropped * head_mask
context_layer = attention_probs_dropped @ value_layer
context_layer = tf.transpose(context_layer, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.all_head_size]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
outputs = outputs + (past_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if self.is_cross_attention:
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.encoder_hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.encoder_hidden_size])
else:
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
class TFBlipTextSelfOutput(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: Optional[bool] = None) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#242
class TFBlipTextAttention(keras.layers.Layer):
def __init__(self, config, is_cross_attention=False, **kwargs):
super().__init__(**kwargs)
self.self = TFBlipTextSelfAttention(config, is_cross_attention, name="self")
# "output" is a protected attribute on TF models
self.self_output = TFBlipTextSelfOutput(config, name="output")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
output_attentions: Optional[bool] = False,
training: Optional[bool] = None,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training=training,
)
attention_output = self.self_output(self_outputs[0], hidden_states, training=training)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self", None) is not None:
with tf.name_scope(self.self.name):
self.self.build(None)
if getattr(self, "self_output", None) is not None:
with tf.name_scope(self.self_output.name):
self.self_output.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertIntermediate with Bert->BlipText
class TFBlipTextIntermediate(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFBlipTextOutput(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = keras.layers.Dropout(rate=config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.intermediate_size])
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFBlipTextLayer(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.attention = TFBlipTextAttention(config, name="attention")
if self.config.is_decoder:
self.crossattention = TFBlipTextAttention(
config, is_cross_attention=self.config.is_decoder, name="crossattention"
)
self.intermediate = TFBlipTextIntermediate(config, name="intermediate")
self.self_output = TFBlipTextOutput(config, name="output")
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=None,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
training=training,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
if encoder_hidden_states is not None:
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
output_attentions=output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
intermediate_output = self.intermediate(attention_output)
layer_output = self.self_output(intermediate_output, attention_output, training=training)
outputs = (layer_output,) + outputs
outputs = outputs + (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "intermediate", None) is not None:
with tf.name_scope(self.intermediate.name):
self.intermediate.build(None)
if getattr(self, "self_output", None) is not None:
with tf.name_scope(self.self_output.name):
self.self_output.build(None)
if getattr(self, "crossattention", None) is not None:
with tf.name_scope(self.crossattention.name):
self.crossattention.build(None)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L386
@keras_serializable
class TFBlipTextEncoder(keras.layers.Layer):
config_class = BlipTextConfig
def __init__(self, config, name=None, **kwargs):
super().__init__(name=name, **kwargs)
self.config = config
self.layer = [TFBlipTextLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
@unpack_inputs
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
training=None,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.is_decoder else None
next_decoder_cache = () if use_cache else None
for i in range(self.config.num_hidden_layers):
layer_module = self.layer[i]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->BlipText
class TFBlipTextPooler(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPredictionHeadTransform with Bert->BlipText
class TFBlipTextPredictionHeadTransform(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
if isinstance(config.hidden_act, str):
self.transform_act_fn = get_tf_activation(config.hidden_act)
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(inputs=hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFBlipTextLMPredictionHead(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.transform = TFBlipTextPredictionHeadTransform(config, name="transform")
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = keras.layers.Dense(
config.vocab_size,
kernel_initializer=get_initializer(config.initializer_range),
name="decoder",
use_bias=False,
)
self.config = config
def build(self, input_shape=None):
self.bias = self.add_weight(name="bias", shape=(self.config.vocab_size,), initializer="zeros", trainable=True)
if self.built:
return
self.built = True
if getattr(self, "transform", None) is not None:
with tf.name_scope(self.transform.name):
self.transform.build(None)
if getattr(self, "decoder", None) is not None:
with tf.name_scope(self.decoder.name):
self.decoder.build([None, None, self.config.hidden_size])
def call(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states) + self.bias
return hidden_states
class TFBlipTextOnlyMLMHead(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.predictions = TFBlipTextLMPredictionHead(config, name="predictions")
def call(self, sequence_output: tf.Tensor) -> tf.Tensor:
prediction_scores = self.predictions(sequence_output)
return prediction_scores
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "predictions", None) is not None:
with tf.name_scope(self.predictions.name):
self.predictions.build(None)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L548
class TFBlipTextPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BlipTextConfig
base_model_prefix = "bert"
_keys_to_ignore_on_load_missing = [r"position_ids"]
# Adapted from https://github.com/salesforce/BLIP/blob/3a29b7410476bf5f2ba0955827390eb6ea1f4f9d/models/med.py#L571
class TFBlipTextModel(TFBlipTextPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin. argument and `is_decoder` set to `True`; an
`encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True, name=None, **kwargs):
super().__init__(config, name=name, **kwargs)
self.config = config
self.embeddings = TFBlipTextEmbeddings(config, name="embeddings")
self.encoder = TFBlipTextEncoder(config, name="encoder")
self.pooler = TFBlipTextPooler(config, name="pooler") if add_pooling_layer else None
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
@tf.function
def get_extended_attention_mask(
self, attention_mask: tf.Tensor, input_shape: Tuple[int], is_decoder: bool
) -> tf.Tensor:
"""
Makes broadcastable attention and causal masks so that future and masked tokens are ignored.
Arguments:
attention_mask (`tf.Tensor`):
Mask with ones indicating tokens to attend to, zeros for tokens to ignore.
input_shape (`Tuple[int]`):
The shape of the input to the model.
is_decoder (`bool`):
Whether the model is used as a decoder.
Returns:
`tf.Tensor` The extended attention mask, with the same dtype as `attention_mask.dtype`.
"""
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if not isinstance(attention_mask, tf.Tensor):
attention_mask = tf.convert_to_tensor(attention_mask) # Catches NumPy inputs that haven't been cast yet
if attention_mask.shape.rank == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.shape.rank == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if is_decoder:
batch_size, seq_length = input_shape
seq_ids = tf.range(seq_length, dtype=attention_mask.dtype)
causal_mask = tf.broadcast_to(seq_ids, (batch_size, seq_length, seq_length)) <= seq_ids[None, :, None]
# in case past_key_values are used we need to add a prefix ones mask to the causal mask
if shape_list(causal_mask)[1] < shape_list(attention_mask)[1]:
prefix_seq_len = tf.shape(attention_mask)[1] - tf.shape(causal_mask)[1]
causal_mask = tf.concat(
[
tf.ones((batch_size, seq_length, prefix_seq_len), dtype=causal_mask.dtype),
causal_mask,
],
axis=-1,
)
extended_attention_mask = (
tf.cast(causal_mask[:, None, :, :], attention_mask.dtype) * attention_mask[:, None, None, :]
)
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for input_ids (shape {}) or attention_mask (shape {})".format(
input_shape, attention_mask.shape
)
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, self.dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
return extended_attention_mask
@add_start_docstrings_to_model_forward(BLIP_TEXT_INPUTS_DOCSTRING)
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
inputs_embeds: tf.Tensor | None = None,
encoder_embeds: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_values: Tuple[Tuple[tf.Tensor]] | None = None,
use_cache: bool | None = None,
output_attentions: bool | None = None,
output_hidden_states: bool | None = None,
return_dict: bool | None = None,
is_decoder: bool = False,
training: bool = False,
) -> Tuple[tf.Tensor] | TFBaseModelOutputWithPoolingAndCrossAttentions:
r"""
encoder_hidden_states (`tf.Tensor`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(tf.Tensor))`, *optional*):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
batch_size, seq_length = input_shape
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
batch_size, seq_length = input_shape
elif encoder_embeds is not None:
input_shape = shape_list(encoder_embeds)[:-1]
batch_size, seq_length = input_shape
else:
raise ValueError("You have to specify either input_ids or inputs_embeds or encoder_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = tf.ones(((batch_size, seq_length + past_key_values_length)))
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: tf.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, is_decoder)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_hidden_states is not None:
if isinstance(encoder_hidden_states, list):
encoder_batch_size, encoder_sequence_length, _ = shape_list(encoder_hidden_states[0])
else:
encoder_batch_size, encoder_sequence_length, _ = shape_list(encoder_hidden_states)
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if isinstance(encoder_attention_mask, list):
encoder_extended_attention_mask = [invert_attention_mask(mask) for mask in encoder_attention_mask]
elif encoder_attention_mask is None:
encoder_attention_mask = tf.ones(encoder_hidden_shape)
encoder_extended_attention_mask = invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
if encoder_embeds is None:
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
else:
embedding_output = encoder_embeds
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build(None)
# Adapted from https://github.com/salesforce/BLIP/blob/main/models/med.py#L811
class TFBlipTextLMHeadModel(TFBlipTextPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids", r"predictions.decoder.bias"]
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
self.bert = TFBlipTextModel(config, add_pooling_layer=False, name="bert")
self.cls = TFBlipTextOnlyMLMHead(config, name="cls")
self.label_smoothing = config.label_smoothing
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
@add_start_docstrings_to_model_forward(BLIP_TEXT_INPUTS_DOCSTRING)
@unpack_inputs
def call(
self,
input_ids=None,
attention_mask=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
labels=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
return_logits=False,
is_decoder=True,
training=None,
):
r"""
encoder_hidden_states (`tf.Tensor`, *optional*): Sequence of
hidden-states at the output of the last layer of the encoder. Used in the cross-attention if the model is
configured as a decoder.
encoder_attention_mask (`tf.Tensor`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (`tf.Tensor`, *optional*):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
`[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are
ignored (masked), the loss is only computed for the tokens with labels n `[0, ..., config.vocab_size]`
past_key_values (`tuple(tuple(tf.Tensor))`, *optional*):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
is_decoder=is_decoder,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
if return_logits:
return prediction_scores[:, :-1, :]
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :]
shifted_prediction_scores = tf.reshape(shifted_prediction_scores, (-1, self.config.vocab_size))
labels = labels[:, 1:]
labels = tf.reshape(labels, (-1,))
# Keras won't give us label smoothing for sparse CE, so we de-sparsify things here
# Use relu to clamp masked labels at 0 to avoid NaN (we will be zeroing those out later anyway)
one_hot_labels = tf.one_hot(tf.nn.relu(labels), depth=self.config.vocab_size, dtype=tf.float32)
loss_fct = keras.losses.CategoricalCrossentropy(
from_logits=True, label_smoothing=self.label_smoothing, reduction="none"
)
masked_positions = tf.cast(tf.not_equal(labels, -100), dtype=tf.float32)
lm_loss = loss_fct(one_hot_labels, shifted_prediction_scores)
lm_loss *= masked_positions
lm_loss = tf.reduce_sum(lm_loss, axis=0) / tf.math.count_nonzero(masked_positions, dtype=tf.float32)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return TFCausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(self, input_ids, past_key_values=None, attention_mask=None, **model_kwargs):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past_key_values is used
if past_key_values is not None:
input_ids = input_ids[:, -1:]
return {
"input_ids": input_ids,
"attention_mask": attention_mask,
"past_key_values": past_key_values,
"encoder_hidden_states": model_kwargs.get("encoder_hidden_states", None),
"encoder_attention_mask": model_kwargs.get("encoder_attention_mask", None),
"is_decoder": True,
}
def _reorder_cache(self, past_key_values, beam_idx):
reordered_past = ()
for layer_past in past_key_values:
reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),)
return reordered_past
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "bert", None) is not None:
with tf.name_scope(self.bert.name):
self.bert.build(None)
if getattr(self, "cls", None) is not None:
with tf.name_scope(self.cls.name):
self.cls.build(None)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/modeling_tf_blip.py
|
# coding=utf-8
# Copyright 2023 The Salesforce Team Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TensorFlow BLIP model."""
from __future__ import annotations
import warnings
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import tensorflow as tf
from ...modeling_tf_outputs import TFBaseModelOutput, TFBaseModelOutputWithPooling
from ...modeling_tf_utils import (
TFPreTrainedModel,
get_initializer,
get_tf_activation,
keras,
keras_serializable,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_blip import BlipConfig, BlipTextConfig, BlipVisionConfig
from .modeling_tf_blip_text import BLIP_TEXT_INPUTS_DOCSTRING, TFBlipTextLMHeadModel, TFBlipTextModel
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "Salesforce/blip-vqa-base"
from ..deprecated._archive_maps import TF_BLIP_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Copied from transformers.models.clip.modeling_tf_clip.contrastive_loss
def contrastive_loss(logits: tf.Tensor) -> tf.Tensor:
return tf.math.reduce_mean(
keras.metrics.sparse_categorical_crossentropy(
y_true=tf.range(shape_list(logits)[0]), y_pred=logits, from_logits=True
)
)
# Copied from transformers.models.clip.modeling_tf_clip.clip_loss with clip->blip
def blip_loss(similarity: tf.Tensor) -> tf.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(tf.transpose(similarity))
return (caption_loss + image_loss) / 2.0
@dataclass
class TFBlipForConditionalGenerationModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder.
Args:
loss (`tf.Tensor`, *optional*, returned when `labels` is provided, `tf.Tensor` of shape `(1,)`):
Languge modeling loss from the text decoder.
logits (`tf.Tensor` of shape `(batch_size, sequence_length, config.vocab_size)`, *optional*):
Prediction scores of the language modeling head of the text decoder model.
image_embeds (`tf.Tensor` of shape `(batch_size, output_dim)`, *optional*):
The image embeddings obtained after applying the Vision Transformer model to the input image.
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings, if the model has an embedding layer, + one for
the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.`
"""
loss: Tuple[tf.Tensor] | None = None
logits: Tuple[tf.Tensor] | None = None
image_embeds: tf.Tensor | None = None
last_hidden_state: tf.Tensor = None
hidden_states: Tuple[tf.Tensor, ...] | None = None
attentions: Tuple[tf.Tensor, ...] | None = None
@property
def decoder_logits(self):
warnings.warn(
"`decoder_logits` attribute is deprecated and will be removed in version 5 of Transformers."
" Please use the `logits` attribute to retrieve the final output instead.",
FutureWarning,
)
return self.logits
@dataclass
class TFBlipTextVisionModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder.
Args:
loss (`tf.Tensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Languge modeling loss from the text decoder.
image_embeds (`tf.Tensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings, if the model has an embedding layer, + one for
the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: tf.Tensor | None = None
image_embeds: tf.Tensor | None = None
last_hidden_state: tf.Tensor = None
hidden_states: Tuple[tf.Tensor, ...] | None = None
attentions: Tuple[tf.Tensor, ...] | None = None
@dataclass
class TFBlipImageTextMatchingModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder as well as the image-text similarity
scores.
Args:
itm_score (`tf.Tensor`):
The image-text similarity scores.
loss (`tf.Tensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Languge modeling loss from the text decoder.
image_embeds (`tf.Tensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings, if the model has an embedding layer, + one for
the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
vision_pooler_output (`tf.Tensor` of shape `(batch_size, hidden_size)`, *optional*):
Last layer hidden-state of the vision of the vision-only branch of the model.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
question_embeds (`tf.Tensor`):
The question embeddings obtained by the text projection layer.
"""
itm_score: tf.Tensor | None = None
loss: tf.Tensor | None = None
image_embeds: tf.Tensor | None = None
last_hidden_state: tf.Tensor = None
hidden_states: Tuple[tf.Tensor, ...] | None = None
vision_pooler_output: tf.Tensor | None = None
attentions: Tuple[tf.Tensor, ...] | None = None
question_embeds: Tuple[tf.Tensor] | None = None
@dataclass
class TFBlipOutput(ModelOutput):
"""
Args:
loss (`tf.Tensor` of shape `(1,)`, *optional*, returned when `return_loss` is `True`):
Contrastive loss for image-text similarity.
logits_per_image:(`tf.Tensor` of shape `(image_batch_size, text_batch_size)`):
The scaled dot product scores between `image_embeds` and `text_embeds`. This represents the image-text
similarity scores.
logits_per_text:(`tf.Tensor` of shape `(text_batch_size, image_batch_size)`):
The scaled dot product scores between `text_embeds` and `image_embeds`. This represents the text-image
similarity scores.
text_embeds(`tf.Tensor` of shape `(batch_size, output_dim`):
The text embeddings obtained by applying the projection layer to the pooled output of [`BlipTextModel`].
image_embeds(`tf.Tensor` of shape `(batch_size, output_dim`):
The image embeddings obtained by applying the projection layer to the pooled output of [`BlipVisionModel`].
text_model_output(`BaseModelOutputWithPooling`):
The output of the [`BlipTextModel`].
vision_model_output(`BaseModelOutputWithPooling`):
The output of the [`BlipVisionModel`].
"""
loss: tf.Tensor | None = None
logits_per_image: tf.Tensor = None
logits_per_text: tf.Tensor = None
text_embeds: tf.Tensor = None
image_embeds: tf.Tensor = None
text_model_output: TFBaseModelOutputWithPooling = None
vision_model_output: TFBaseModelOutputWithPooling = None
def to_tuple(self) -> Tuple[Any]:
return tuple(
self[k] if k not in ["text_model_output", "vision_model_output"] else getattr(self, k).to_tuple()
for k in self.keys()
)
class TFBlipVisionEmbeddings(keras.layers.Layer):
def __init__(self, config: BlipVisionConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embed_dim = config.hidden_size
self.image_size = config.image_size
self.patch_size = config.patch_size
self.patch_embedding = keras.layers.Conv2D(
filters=self.embed_dim,
kernel_size=self.patch_size,
strides=self.patch_size,
kernel_initializer=get_initializer(self.config.initializer_range),
data_format="channels_last",
name="patch_embedding",
)
self.num_patches = (self.image_size // self.patch_size) ** 2
self.num_positions = self.num_patches + 1
def build(self, input_shape=None):
self.class_embedding = self.add_weight(
shape=(1, 1, self.embed_dim),
initializer=get_initializer(self.config.initializer_range),
trainable=True,
name="class_embedding",
)
self.position_embedding = self.add_weight(
shape=(1, self.num_positions, self.embed_dim),
initializer=get_initializer(self.config.initializer_range),
trainable=True,
name="position_embedding",
)
if self.built:
return
self.built = True
if getattr(self, "patch_embedding", None) is not None:
with tf.name_scope(self.patch_embedding.name):
self.patch_embedding.build([None, None, None, 3])
def call(self, pixel_values: tf.Tensor) -> tf.Tensor:
# Input is channels-first, we transpose. PyTorch transposes after the conv because PyTorch
# likes channels-first convs.
batch_size = tf.shape(pixel_values)[0]
pixel_values = tf.transpose(pixel_values, perm=(0, 2, 3, 1))
patch_embeds = self.patch_embedding(pixel_values)
patch_embeds = tf.reshape(patch_embeds, (batch_size, self.num_patches, -1))
class_embeds = tf.broadcast_to(self.class_embedding, (batch_size, 1, self.embed_dim))
embeddings = tf.concat([class_embeds, patch_embeds], axis=1)
embeddings = embeddings + self.position_embedding[:, : tf.shape(embeddings)[1], :]
return embeddings
# Copied from transformers.models.clip.modeling_tf_clip.TFCLIPTextEmbeddings with CLIP->Blip
class TFBlipTextEmbeddings(keras.layers.Layer):
def __init__(self, config: BlipTextConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.hidden_size
self.config = config
def build(self, input_shape: tf.TensorShape = None):
with tf.name_scope("token_embedding"):
self.weight = self.add_weight(
shape=(self.config.vocab_size, self.embed_dim),
initializer=get_initializer(self.config.initializer_factor * self.config.initializer_range),
trainable=True,
name="weight",
)
with tf.name_scope("position_embedding"):
self.position_embedding = self.add_weight(
shape=(self.config.max_position_embeddings, self.embed_dim),
initializer=get_initializer(self.config.initializer_factor * self.config.initializer_range),
trainable=True,
name="embeddings",
)
super().build(input_shape)
def call(
self,
input_ids: tf.Tensor = None,
position_ids: tf.Tensor = None,
inputs_embeds: tf.Tensor = None,
) -> tf.Tensor:
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (`tf.Tensor`): output embedding tensor.
"""
if input_ids is None and inputs_embeds is None:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if position_ids is None:
position_ids = tf.expand_dims(tf.range(start=0, limit=input_shape[-1]), axis=0)
position_embeds = tf.gather(params=self.position_embedding, indices=position_ids)
position_embeds = tf.tile(input=position_embeds, multiples=(input_shape[0], 1, 1))
final_embeddings = inputs_embeds + position_embeds
return final_embeddings
class TFBlipAttention(keras.layers.Layer):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embed_dim = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {self.num_heads})."
)
self.scale = self.head_dim**-0.5
self.dropout = keras.layers.Dropout(config.attention_dropout, name="dropout")
self.qkv = keras.layers.Dense(
3 * self.embed_dim, kernel_initializer=get_initializer(config.initializer_range), name="qkv"
)
self.projection = keras.layers.Dense(
self.embed_dim, kernel_initializer=get_initializer(config.initializer_range), name="projection"
)
def call(
self,
hidden_states: tf.Tensor,
head_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = False,
training: Optional[bool] = None,
) -> Tuple[tf.Tensor, tf.Tensor | None, Tuple[tf.Tensor] | None]:
"""Input shape: Batch x Time x Channel"""
bsz, tgt_len, embed_dim = shape_list(hidden_states)
mixed_qkv = self.qkv(hidden_states)
mixed_qkv = tf.reshape(mixed_qkv, (bsz, tgt_len, 3, self.num_heads, self.head_dim))
mixed_qkv = tf.transpose(mixed_qkv, perm=(2, 0, 3, 1, 4))
query_states, key_states, value_states = mixed_qkv[0], mixed_qkv[1], mixed_qkv[2]
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = query_states @ tf.transpose(key_states, (0, 1, 3, 2))
attention_scores = attention_scores * self.scale
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = tf.transpose(attention_probs @ value_states, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.embed_dim]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
output = self.projection(context_layer)
outputs = (output, attention_probs) if output_attentions else (output, None)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dropout", None) is not None:
with tf.name_scope(self.dropout.name):
self.dropout.build(None)
if getattr(self, "qkv", None) is not None:
with tf.name_scope(self.qkv.name):
self.qkv.build([None, None, self.embed_dim])
if getattr(self, "projection", None) is not None:
with tf.name_scope(self.projection.name):
self.projection.build([None, None, self.embed_dim])
class TFBlipMLP(keras.layers.Layer):
def __init__(self, config: BlipConfig, **kwargs):
super().__init__(**kwargs)
self.activation_fn = get_tf_activation(config.hidden_act)
in_proj_std = (config.hidden_size**-0.5) * ((2 * config.num_hidden_layers) ** -0.5)
fc_std = (2 * config.hidden_size) ** -0.5
self.fc1 = keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(fc_std), name="fc1"
)
self.fc2 = keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(in_proj_std), name="fc2"
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.fc1(inputs=hidden_states)
hidden_states = self.activation_fn(hidden_states)
hidden_states = self.fc2(inputs=hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "fc1", None) is not None:
with tf.name_scope(self.fc1.name):
self.fc1.build([None, None, self.config.hidden_size])
if getattr(self, "fc2", None) is not None:
with tf.name_scope(self.fc2.name):
self.fc2.build([None, None, self.config.intermediate_size])
class TFBlipEncoderLayer(keras.layers.Layer):
def __init__(self, config: BlipConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.hidden_size
self.self_attn = TFBlipAttention(config, name="self_attn")
self.layer_norm1 = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm1")
self.mlp = TFBlipMLP(config, name="mlp")
self.layer_norm2 = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm2")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
output_attentions: Optional[bool] = False,
training: Optional[bool] = None,
) -> Tuple[tf.Tensor]:
"""
Args:
hidden_states (`tf.Tensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`tf.Tensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
`(config.encoder_attention_heads,)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states = self.layer_norm1(hidden_states)
hidden_states, attn_weights = self.self_attn(
hidden_states=hidden_states,
head_mask=attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = hidden_states + residual
residual = hidden_states
hidden_states = self.layer_norm2(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = hidden_states + residual
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "layer_norm1", None) is not None:
with tf.name_scope(self.layer_norm1.name):
self.layer_norm1.build([None, None, self.embed_dim])
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
if getattr(self, "layer_norm2", None) is not None:
with tf.name_scope(self.layer_norm2.name):
self.layer_norm2.build([None, None, self.embed_dim])
class TFBlipPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BlipConfig
base_model_prefix = "blip"
_keys_to_ignore_on_load_missing = [r"position_ids"]
BLIP_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
Parameters:
config ([`BlipConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLIP_VISION_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`BlipImageProcessor`]. See [`BlipImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BLIP_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoProcessor`]. See [`BlipProcessor.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`BlipImageProcessor`]. See [`BlipImageProcessor.__call__`] for details.
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@keras_serializable
class TFBlipEncoder(keras.layers.Layer):
config_class = BlipConfig
"""
Transformer encoder consisting of `config.num_hidden_layers` self attention layers. Each layer is a
[`BlipEncoderLayer`].
Args:
config (`BlipConfig`):
The corresponding vision configuration for the `BlipEncoder`.
"""
def __init__(self, config: BlipConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.layers = [TFBlipEncoderLayer(config, name=f"layers_._{i}") for i in range(config.num_hidden_layers)]
@unpack_inputs
def call(
self,
inputs_embeds,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBaseModelOutput]:
r"""
Args:
inputs_embeds (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Embedded representation of the inputs. Should be float, not int tokens.
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
hidden_states = inputs_embeds
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
class TFBlipVisionModel(TFBlipPreTrainedModel):
main_input_name = "pixel_values"
config_class = BlipVisionConfig
def __init__(self, config: BlipVisionConfig, *args, **kwargs):
super().__init__(config, *args, **kwargs)
self.config = config
self.embeddings = TFBlipVisionEmbeddings(config, name="embeddings")
self.encoder = TFBlipEncoder(config, name="encoder")
self.post_layernorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="post_layernorm")
self.embed_dim = config.hidden_size
def serving_output(self, output: TFBaseModelOutputWithPooling) -> TFBaseModelOutputWithPooling:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFBaseModelOutputWithPooling(
last_hidden_state=output.last_hidden_state,
pooler_output=output.pooler_output,
hidden_states=hs,
attentions=attns,
)
@unpack_inputs
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBaseModelOutputWithPooling, config_class=BlipVisionConfig)
def call(
self,
pixel_values: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBaseModelOutputWithPooling]:
r"""
Returns:
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
hidden_states = self.embeddings(pixel_values)
encoder_outputs = self.encoder(
inputs_embeds=hidden_states,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
last_hidden_state = encoder_outputs[0]
last_hidden_state = self.post_layernorm(last_hidden_state)
pooled_output = last_hidden_state[:, 0, :]
# TF gets confused if we call the layer with inputs of different ranks, so insert a singleton dimension
pooled_output = self.post_layernorm(tf.expand_dims(pooled_output, 1))
pooled_output = tf.squeeze(pooled_output, 1)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return TFBaseModelOutputWithPooling(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
def get_input_embeddings(self):
return self.embeddings
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "post_layernorm", None) is not None:
with tf.name_scope(self.post_layernorm.name):
self.post_layernorm.build([None, None, self.embed_dim])
class TFBlipMainLayer(keras.layers.Layer):
config_class = BlipConfig
def __init__(self, config: BlipConfig, *args, **kwargs):
super().__init__(*args, **kwargs)
if not isinstance(config.text_config, BlipTextConfig):
raise ValueError(
"config.text_config is expected to be of type BlipTextConfig but is of type"
f" {type(config.text_config)}."
)
if not isinstance(config.vision_config, BlipVisionConfig):
raise ValueError(
"config.vision_config is expected to be of type BlipVisionConfig but is of type"
f" {type(config.vision_config)}."
)
text_config = config.text_config
vision_config = config.vision_config
self.projection_dim = config.projection_dim
self.text_embed_dim = text_config.hidden_size
self.vision_embed_dim = vision_config.hidden_size
self.text_model = TFBlipTextModel(text_config, name="text_model")
self.vision_model = TFBlipVisionModel(vision_config, name="vision_model")
self.visual_projection = keras.layers.Dense(
self.projection_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="visual_projection",
)
self.text_projection = keras.layers.Dense(
self.projection_dim,
use_bias=False,
kernel_initializer=get_initializer(config.initializer_range),
name="text_projection",
)
self.config = config
def build(self, input_shape=None):
self.logit_scale = self.add_weight(
name="logit_scale",
shape=[],
initializer=keras.initializers.Constant(self.config.logit_scale_init_value),
trainable=True,
)
if self.built:
return
self.built = True
if getattr(self, "text_model", None) is not None:
with tf.name_scope(self.text_model.name):
self.text_model.build(None)
if getattr(self, "vision_model", None) is not None:
with tf.name_scope(self.vision_model.name):
self.vision_model.build(None)
if getattr(self, "visual_projection", None) is not None:
with tf.name_scope(self.visual_projection.name):
self.visual_projection.build([None, None, self.vision_embed_dim])
if getattr(self, "text_projection", None) is not None:
with tf.name_scope(self.text_projection.name):
self.text_projection.build([None, None, self.text_embed_dim])
@unpack_inputs
def call(
self,
input_ids: tf.Tensor | None = None,
pixel_values: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
return_loss: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBlipOutput]:
# Use BLIP model's config for some fields (if specified) instead of those of vision & text components.
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
image_embeds = vision_outputs[1]
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1]
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / tf.norm(image_embeds, ord=2, axis=-1, keepdims=True)
text_embeds = text_embeds / tf.norm(text_embeds, ord=2, axis=-1, keepdims=True)
# cosine similarity as logits
logit_scale = tf.exp(self.logit_scale)
logits_per_text = tf.matmul(text_embeds, image_embeds, transpose_b=True) * logit_scale
logits_per_image = tf.transpose(logits_per_text)
loss = None
if return_loss:
loss = blip_loss(logits_per_text)
loss = tf.reshape(loss, (1,))
if not return_dict:
output = (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return ((loss,) + output) if loss is not None else output
return TFBlipOutput(
loss=loss,
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
class TFBlipModel(TFBlipPreTrainedModel):
config_class = BlipConfig
_keys_to_ignore_on_load_missing = [r"text_decoder.cls.predictions.decoder.bias"]
main_input_name = "input_ids"
def __init__(self, config: BlipConfig, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.blip = TFBlipMainLayer(config, name="blip")
def serving_output(self, output: TFBlipOutput) -> TFBlipOutput:
return TFBlipOutput(
logits_per_image=output.logits_per_image,
logits_per_text=output.logits_per_text,
text_embeds=output.text_embeds,
image_embeds=output.image_embeds,
)
@unpack_inputs
@add_start_docstrings_to_model_forward(BLIP_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBlipOutput, config_class=BlipConfig)
def call(
self,
input_ids: tf.Tensor | None = None,
pixel_values: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
return_loss: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBlipOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipModel
>>> model = TFBlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(
... text=["a photo of a cat", "a photo of a dog"], images=image, return_tensors="tf", padding=True
... )
>>> outputs = model(**inputs)
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> probs = tf.nn.softmax(logits_per_image, axis=1) # we can take the softmax to get the label probabilities
```"""
outputs = self.blip(
input_ids=input_ids,
pixel_values=pixel_values,
attention_mask=attention_mask,
position_ids=position_ids,
return_loss=return_loss,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
@add_start_docstrings_to_model_forward(BLIP_TEXT_INPUTS_DOCSTRING)
def get_text_features(
self,
input_ids: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
position_ids: tf.Tensor | None = None,
return_dict: Optional[bool] = None,
) -> tf.Tensor:
r"""
Returns:
text_features (`tf.Tensor` of shape `(batch_size, output_dim`): The text embeddings obtained by applying
the projection layer to the pooled output of [`TFBlipTextModel`].
Examples:
```python
>>> from transformers import AutoProcessor, TFBlipModel
>>> model = TFBlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> inputs = processor(text=["a photo of a cat", "a photo of a dog"], padding=True, return_tensors="tf")
>>> text_features = model.get_text_features(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
text_outputs = self.blip.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
return_dict=return_dict,
)
pooled_output = text_outputs[1]
text_features = self.blip.text_projection(pooled_output)
return text_features
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
def get_image_features(
self,
pixel_values: tf.Tensor | None = None,
return_dict: Optional[bool] = None,
) -> tf.Tensor:
r"""
Returns:
image_features (`tf.Tensor` of shape `(batch_size, output_dim`): The image embeddings obtained by applying
the projection layer to the pooled output of [`TFBlipVisionModel`].
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipModel
>>> model = TFBlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(images=image, return_tensors="tf")
>>> image_features = model.get_image_features(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.blip.vision_model(pixel_values=pixel_values, return_dict=return_dict)
pooled_output = vision_outputs[1] # pooled_output
image_features = self.blip.visual_projection(pooled_output)
return image_features
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "blip", None) is not None:
with tf.name_scope(self.blip.name):
self.blip.build(None)
@add_start_docstrings(
"""
BLIP Model for image captioning. The model consists of a vision encoder and a text decoder. One can optionally pass
`input_ids` to the model, which serve as a text prompt, to make the text decoder continue the prompt. Otherwise,
the decoder starts generating text from the [BOS] (beginning-of-sequence) token. will start generating the caption
from the text input. If no text input is provided, the decoder will start with the [BOS] token only.
""",
BLIP_START_DOCSTRING,
)
class TFBlipForConditionalGeneration(TFBlipPreTrainedModel):
config_class = BlipConfig
_keys_to_ignore_on_load_missing = [r"text_decoder.cls.predictions.decoder.bias"]
main_input_name = "pixel_values"
def __init__(self, config: BlipConfig, *args, **kwargs):
super().__init__(config, *args, **kwargs)
self.vision_model = TFBlipVisionModel(config.vision_config, name="vision_model")
self.text_decoder = TFBlipTextLMHeadModel(config.text_config, name="text_decoder")
self.decoder_input_ids = config.text_config.bos_token_id
self.decoder_pad_token_id = config.text_config.pad_token_id
def get_input_embeddings(self) -> keras.layers.Layer:
return self.vision_model.embeddings.patch_embedding
@unpack_inputs
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBlipForConditionalGenerationModelOutput, config_class=BlipConfig)
def call(
self,
pixel_values: tf.Tensor,
input_ids: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: tf.Tensor | None = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBlipForConditionalGenerationModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipForConditionalGeneration
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> model = TFBlipForConditionalGeneration.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "A picture of"
>>> inputs = processor(images=image, text=text, return_tensors="tf")
>>> outputs = model(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
image_embeds = vision_outputs[0]
outputs = self.text_decoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
labels=labels,
return_dict=False,
training=training,
)
if not return_dict:
outputs = (outputs[0], outputs[1], image_embeds, vision_outputs[0]) + vision_outputs[2:]
return tuple(output for output in outputs if output is not None)
if labels is not None:
loss = outputs[0]
logits = outputs[1]
else:
loss = None
logits = outputs[0]
if loss is not None and loss.shape.rank == 0:
loss = tf.reshape(loss, (1,))
return TFBlipForConditionalGenerationModelOutput(
loss=loss,
logits=logits,
image_embeds=image_embeds,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
)
def generate(
self,
pixel_values: tf.Tensor,
input_ids: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
**generate_kwargs,
) -> tf.Tensor:
r"""
Overrides *generate* function to be able to use the model as a conditional generator
Parameters:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, image_height, image_width)`:
Input image to be processed
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
The sequence used as a prompt for the generation.
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipForConditionalGeneration
>>> model = TFBlipForConditionalGeneration.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(images=image, return_tensors="tf")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
two cats sleeping on a couch
```
"""
batch_size = pixel_values.shape[0]
vision_outputs = self.vision_model(pixel_values=pixel_values)
image_embeds = vision_outputs[0]
image_attention_mask = tf.ones(shape_list(image_embeds)[:-1], dtype=tf.int32)
if isinstance(input_ids, list):
input_ids = tf.convert_to_tensor(input_ids, dtype=tf.int32)
elif input_ids is None:
input_ids = tf.convert_to_tensor(
[[self.decoder_input_ids, self.config.text_config.eos_token_id]], dtype=tf.int32
)
input_ids = tf.tile(input_ids, (batch_size, 1))
# PyTorch: input_ids[:, 0] = self.config.text_config.bos_token_id
input_ids = tf.concat(
[tf.ones((batch_size, 1), dtype=tf.int32) * self.config.text_config.bos_token_id, input_ids[:, 1:]], axis=1
)
attention_mask = attention_mask[:, :-1] if attention_mask is not None else None
outputs = self.text_decoder.generate(
input_ids=input_ids[:, :-1],
eos_token_id=self.config.text_config.sep_token_id,
pad_token_id=self.config.text_config.pad_token_id,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
**generate_kwargs,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "vision_model", None) is not None:
with tf.name_scope(self.vision_model.name):
self.vision_model.build(None)
if getattr(self, "text_decoder", None) is not None:
with tf.name_scope(self.text_decoder.name):
self.text_decoder.build(None)
@add_start_docstrings(
"""
BLIP Model for visual question answering. The model consists of a vision encoder, a text encoder as well as a text
decoder. The vision encoder will encode the input image, the text encoder will encode the input question together
with the encoding of the image, and the text decoder will output the answer to the question.
""",
BLIP_START_DOCSTRING,
)
class TFBlipForQuestionAnswering(TFBlipPreTrainedModel):
config_class = BlipConfig
_keys_to_ignore_on_load_missing = [r"text_decoder.cls.predictions.decoder.bias"]
def __init__(self, config: BlipConfig, *args, **kwargs):
super().__init__(config, *args, **kwargs)
self.vision_model = TFBlipVisionModel(config.vision_config, name="vision_model")
self.text_encoder = TFBlipTextModel(config.text_config, name="text_encoder", add_pooling_layer=False)
self.text_decoder = TFBlipTextLMHeadModel(config.text_config, name="text_decoder")
self.decoder_pad_token_id = config.text_config.pad_token_id
self.decoder_start_token_id = config.text_config.bos_token_id
def get_input_embeddings(self) -> keras.layers.Layer:
return self.vision_model.embeddings.patch_embedding
# Adapted from transformers.models.t5.modeling_tf_t5.TFT5PreTrainedModel._shift_right
def _shift_right(self, input_ids):
decoder_start_token_id = self.decoder_start_token_id
pad_token_id = self.decoder_pad_token_id
if decoder_start_token_id is None or pad_token_id is None:
raise ValueError("decoder_start_token_id and pad_token_id must be defined!")
start_tokens = tf.fill((shape_list(input_ids)[0], 1), decoder_start_token_id)
start_tokens = tf.cast(start_tokens, input_ids.dtype) # Ensure compatible dtypes for concatenation
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.cast(tf.fill(shape_list(shifted_input_ids), pad_token_id), shifted_input_ids.dtype),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0, dtype=shifted_input_ids.dtype))
return shifted_input_ids
@unpack_inputs
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBlipTextVisionModelOutput, config_class=BlipVisionConfig)
def call(
self,
input_ids: tf.Tensor,
pixel_values: tf.Tensor | None = None,
decoder_input_ids: tf.Tensor | None = None,
decoder_attention_mask: tf.Tensor | None = None,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: tf.Tensor | None = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBlipTextVisionModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipForQuestionAnswering
>>> model = TFBlipForQuestionAnswering.from_pretrained("Salesforce/blip-vqa-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-vqa-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> # training
>>> text = "How many cats are in the picture?"
>>> label = "2"
>>> inputs = processor(images=image, text=text, return_tensors="tf")
>>> labels = processor(text=label, return_tensors="tf").input_ids
>>> inputs["labels"] = labels
>>> outputs = model(**inputs)
>>> loss = outputs.loss
>>> # inference
>>> text = "How many cats are in the picture?"
>>> inputs = processor(images=image, text=text, return_tensors="tf")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
2
```"""
if labels is None and decoder_input_ids is None:
raise ValueError(
"Either `decoder_input_ids` or `labels` should be passed when calling"
" `TFBlipForQuestionAnswering`. if you are training the model make sure that `labels` is passed, if you"
" are using the model for inference make sure that `decoder_input_ids` is passed or call `generate`"
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
image_embeds = vision_outputs[0]
image_attention_mask = tf.ones(shape_list(image_embeds)[:-1], dtype=tf.int64)
question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
return_dict=return_dict,
training=training,
)
question_embeds = question_embeds[0] if not return_dict else question_embeds.last_hidden_state
if labels is not None and decoder_input_ids is None:
# labels are already shifted right, see: https://github.com/huggingface/transformers/pull/23153
decoder_input_ids = labels
answer_output = self.text_decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=question_embeds,
encoder_attention_mask=attention_mask,
labels=labels,
return_dict=return_dict,
training=training,
)
if labels is not None:
decoder_loss = tf.reduce_mean(answer_output.loss) if return_dict else tf.reduce_mean(answer_output[0])
else:
decoder_loss = None
if not return_dict:
outputs = (decoder_loss, image_embeds, vision_outputs[0]) + vision_outputs[2:]
return tuple(output for output in outputs if output is not None)
return TFBlipTextVisionModelOutput(
loss=decoder_loss,
image_embeds=image_embeds,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
)
def generate(
self,
input_ids: tf.Tensor,
pixel_values: tf.Tensor,
attention_mask: tf.Tensor | None = None,
**generate_kwargs,
) -> tf.Tensor:
r"""
Overrides *generate* function to be able to use the model as a conditional generator
Parameters:
input_ids (`tf.Tensor` of shape `(batch_size, sequence_length)`):
The sequence used as a prompt for the generation.
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, image_height, image_width)`:
Input image to be processed
attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`. `1` for
tokens that are NOT MASKED, `0` for MASKED tokens.
generate_kwargs (dict, *optional*):
Additional arguments passed to the `generate` function of the decoder
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipForQuestionAnswering
>>> model = TFBlipForQuestionAnswering.from_pretrained("Salesforce/blip-vqa-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-vqa-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "How many cats are in the picture?"
>>> inputs = processor(images=image, text=text, return_tensors="tf")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
2
```
"""
vision_outputs = self.vision_model(pixel_values=pixel_values)
image_embeds = vision_outputs[0]
image_attention_mask = tf.ones(shape_list(image_embeds)[:-1], dtype=tf.int32)
if isinstance(input_ids, list):
input_ids = tf.Tensor(input_ids)
question_outputs = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
return_dict=False,
)
question_embeds = question_outputs[0]
question_attention_mask = tf.ones(shape_list(question_embeds)[:-1], dtype=tf.int32)
bos_ids = tf.fill(
(tf.shape(question_embeds)[0], 1), value=tf.cast(self.decoder_start_token_id, input_ids.dtype)
)
outputs = self.text_decoder.generate(
input_ids=bos_ids,
eos_token_id=self.config.text_config.sep_token_id,
pad_token_id=self.config.text_config.pad_token_id,
encoder_hidden_states=question_embeds,
encoder_attention_mask=question_attention_mask,
**generate_kwargs,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "vision_model", None) is not None:
with tf.name_scope(self.vision_model.name):
self.vision_model.build(None)
if getattr(self, "text_encoder", None) is not None:
with tf.name_scope(self.text_encoder.name):
self.text_encoder.build(None)
if getattr(self, "text_decoder", None) is not None:
with tf.name_scope(self.text_decoder.name):
self.text_decoder.build(None)
@add_start_docstrings(
"""
BLIP Model with a vision and text projector, and a classification head on top. The model is used in the context of
image-text retrieval. Given an image and a text, the model returns the probability of the text being relevant to
the image.
""",
BLIP_START_DOCSTRING,
)
class TFBlipForImageTextRetrieval(TFBlipPreTrainedModel):
config_class = BlipConfig
def __init__(self, config: BlipConfig, *args, **kwargs):
super().__init__(config, *args, **kwargs)
self.vision_model = TFBlipVisionModel(config.vision_config, name="vision_model")
self.text_encoder = TFBlipTextModel(config.text_config, name="text_encoder", add_pooling_layer=False)
# vision projection layer
self.vision_proj = keras.layers.Dense(
config.image_text_hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
name="vision_proj",
)
# text projection layer
self.text_proj = keras.layers.Dense(
config.image_text_hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
name="text_proj",
)
# image text matching head
self.itm_head = keras.layers.Dense(
2, kernel_initializer=get_initializer(config.initializer_range), name="itm_head"
)
self.decoder_pad_token_id = (
config.text_config.pad_token_id
if not hasattr(config, "decoder_pad_token_id")
else config.decoder_pad_token_id
)
self.decoder_start_token_id = (
config.text_config.bos_token_id
if not hasattr(config, "decoder_start_token_id")
else config.decoder_start_token_id
)
self.config = config
def get_input_embeddings(self) -> keras.layers.Layer:
return self.vision_model.embeddings.patch_embedding
@unpack_inputs
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFBlipImageTextMatchingModelOutput, config_class=BlipVisionConfig)
def call(
self,
input_ids: tf.Tensor,
pixel_values: tf.Tensor | None = None,
use_itm_head: Optional[bool] = True,
attention_mask: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = None,
) -> Union[Tuple, TFBlipImageTextMatchingModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, TFBlipForImageTextRetrieval
>>> model = TFBlipForImageTextRetrieval.from_pretrained("Salesforce/blip-itm-base-coco")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-itm-base-coco")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "an image of a cat"
>>> inputs = processor(images=image, text=text, return_tensors="tf")
>>> outputs = model(**inputs)
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
image_embeds = vision_outputs[0]
image_atts = tf.ones(shape_list(image_embeds)[:-1], dtype=tf.int64)
# Matt: In PyTorch, only one path (itm/non-itm) is taken. However, in TensorFlow this can result in
# some layers not being built! To avoid this, we always call both paths, then use an if statement to select
# which output to pass to the final output. The unnecessary nodes will be pruned from the final graph, but
# not before the layers have all been built correctly.
itm_question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_atts,
return_dict=return_dict,
training=training,
)
itm_question_embeds = itm_question_embeds[0] if not return_dict else itm_question_embeds.last_hidden_state
itm_output = self.itm_head(itm_question_embeds[:, 0, :])
no_itm_question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
return_dict=return_dict,
training=training,
)
no_itm_question_embeds = (
no_itm_question_embeds[0] if not return_dict else no_itm_question_embeds.last_hidden_state
)
image_feat, _ = tf.linalg.normalize(self.vision_proj(image_embeds[:, 0, :]), ord=2, axis=-1)
text_feat, _ = tf.linalg.normalize(self.text_proj(no_itm_question_embeds[:, 0, :]), ord=2, axis=-1)
no_itm_output = tf.matmul(image_feat, text_feat, transpose_b=True)
if use_itm_head:
output = itm_output
question_embeds = itm_question_embeds
else:
output = no_itm_output
question_embeds = no_itm_question_embeds
if not return_dict:
outputs = (output, vision_outputs[0]) + vision_outputs[2:] + (question_embeds,)
return tuple(output for output in outputs if output is not None)
return TFBlipImageTextMatchingModelOutput(
itm_score=output,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
question_embeds=question_embeds,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "vision_model", None) is not None:
with tf.name_scope(self.vision_model.name):
self.vision_model.build(None)
if getattr(self, "text_encoder", None) is not None:
with tf.name_scope(self.text_encoder.name):
self.text_encoder.build(None)
if getattr(self, "vision_proj", None) is not None:
with tf.name_scope(self.vision_proj.name):
self.vision_proj.build([None, None, self.config.vision_config.hidden_size])
if getattr(self, "text_proj", None) is not None:
with tf.name_scope(self.text_proj.name):
self.text_proj.build([None, None, self.config.text_config.hidden_size])
if getattr(self, "itm_head", None) is not None:
with tf.name_scope(self.itm_head.name):
self.itm_head.build([None, None, self.config.text_config.hidden_size])
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/__init__.py
|
# Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_torch_available,
is_vision_available,
)
_import_structure = {
"configuration_blip": [
"BLIP_PRETRAINED_CONFIG_ARCHIVE_MAP",
"BlipConfig",
"BlipTextConfig",
"BlipVisionConfig",
],
"processing_blip": ["BlipProcessor"],
}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_blip"] = ["BlipImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_blip"] = [
"BLIP_PRETRAINED_MODEL_ARCHIVE_LIST",
"BlipModel",
"BlipPreTrainedModel",
"BlipForConditionalGeneration",
"BlipForQuestionAnswering",
"BlipVisionModel",
"BlipTextModel",
"BlipForImageTextRetrieval",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_blip"] = [
"TF_BLIP_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFBlipModel",
"TFBlipPreTrainedModel",
"TFBlipForConditionalGeneration",
"TFBlipForQuestionAnswering",
"TFBlipVisionModel",
"TFBlipTextModel",
"TFBlipForImageTextRetrieval",
]
if TYPE_CHECKING:
from .configuration_blip import BLIP_PRETRAINED_CONFIG_ARCHIVE_MAP, BlipConfig, BlipTextConfig, BlipVisionConfig
from .processing_blip import BlipProcessor
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_blip import BlipImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_blip import (
BLIP_PRETRAINED_MODEL_ARCHIVE_LIST,
BlipForConditionalGeneration,
BlipForImageTextRetrieval,
BlipForQuestionAnswering,
BlipModel,
BlipPreTrainedModel,
BlipTextModel,
BlipVisionModel,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_blip import (
TF_BLIP_PRETRAINED_MODEL_ARCHIVE_LIST,
TFBlipForConditionalGeneration,
TFBlipForImageTextRetrieval,
TFBlipForQuestionAnswering,
TFBlipModel,
TFBlipPreTrainedModel,
TFBlipTextModel,
TFBlipVisionModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/configuration_blip.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Blip model configuration"""
import os
from typing import Union
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import BLIP_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class BlipTextConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BlipTextModel`]. It is used to instantiate a BLIP
text model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the `BlipText` used by the [base
architectures](https://huggingface.co/Salesforce/blip-vqa-base).
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 30524):
Vocabulary size of the `Blip` text model. Defines the number of different tokens that can be represented by
the `inputs_ids` passed when calling [`BlipModel`].
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
encoder_hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers from the vision model.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer encoder.
max_position_embeddings (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` ``"gelu"` are supported.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
bos_token_id (`int`, *optional*, defaults to 30522):
The id of the `beginning-of-sequence` token.
eos_token_id (`int`, *optional*, defaults to 2):
The id of the `end-of-sequence` token.
pad_token_id (`int`, *optional*, defaults to 0):
The id of the `padding` token.
sep_token_id (`int`, *optional*, defaults to 102):
The id of the `separator` token.
is_decoder (`bool`, *optional*, defaults to `True`):
Whether the model is used as a decoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models).
label_smoothing (float, *optional*):
A float in [0.0, 1.0]. Specifies the amount of smoothing when computing the loss, where 0.0 means no smoothing. The targets
become a mixture of the original ground truth and a uniform distribution as described in
`Rethinking the Inception Architecture for Computer Vision <https://arxiv.org/abs/1512.00567>`__. Default: :math:`0.0`.
Example:
```python
>>> from transformers import BlipTextConfig, BlipTextModel
>>> # Initializing a BlipTextConfig with Salesforce/blip-vqa-base style configuration
>>> configuration = BlipTextConfig()
>>> # Initializing a BlipTextModel (with random weights) from the Salesforce/blip-vqa-base style configuration
>>> model = BlipTextModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "blip_text_model"
def __init__(
self,
vocab_size=30524,
hidden_size=768,
encoder_hidden_size=768,
intermediate_size=3072,
projection_dim=768,
num_hidden_layers=12,
num_attention_heads=8,
max_position_embeddings=512,
hidden_act="gelu",
layer_norm_eps=1e-12,
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
bos_token_id=30522,
eos_token_id=2,
pad_token_id=0,
sep_token_id=102,
is_decoder=True,
use_cache=True,
label_smoothing=0.0,
**kwargs,
):
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
sep_token_id=sep_token_id,
**kwargs,
)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.encoder_hidden_size = encoder_hidden_size
self.intermediate_size = intermediate_size
self.projection_dim = projection_dim
self.hidden_dropout_prob = hidden_dropout_prob
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.max_position_embeddings = max_position_embeddings
self.layer_norm_eps = layer_norm_eps
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.is_decoder = is_decoder
self.use_cache = use_cache
self.label_smoothing = label_smoothing
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs) -> "PretrainedConfig":
cls._set_token_in_kwargs(kwargs)
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
# get the text config dict if we are loading from BlipConfig
if config_dict.get("model_type") == "blip":
config_dict = config_dict["text_config"]
if "model_type" in config_dict and hasattr(cls, "model_type") and config_dict["model_type"] != cls.model_type:
logger.warning(
f"You are using a model of type {config_dict['model_type']} to instantiate a model of type "
f"{cls.model_type}. This is not supported for all configurations of models and can yield errors."
)
return cls.from_dict(config_dict, **kwargs)
class BlipVisionConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`BlipVisionModel`]. It is used to instantiate a
BLIP vision model according to the specified arguments, defining the model architecture. Instantiating a
configuration defaults will yield a similar configuration to that of the Blip-base
[Salesforce/blip-vqa-base](https://huggingface.co/Salesforce/blip-vqa-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
image_size (`int`, *optional*, defaults to 384):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` ``"gelu"` are supported.
layer_norm_eps (`float`, *optional*, defaults to 1e-5):
The epsilon used by the layer normalization layers.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 1e-10):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
Example:
```python
>>> from transformers import BlipVisionConfig, BlipVisionModel
>>> # Initializing a BlipVisionConfig with Salesforce/blip-vqa-base style configuration
>>> configuration = BlipVisionConfig()
>>> # Initializing a BlipVisionModel (with random weights) from the Salesforce/blip-vqa-base style configuration
>>> model = BlipVisionModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "blip_vision_model"
def __init__(
self,
hidden_size=768,
intermediate_size=3072,
projection_dim=512,
num_hidden_layers=12,
num_attention_heads=12,
image_size=384,
patch_size=16,
hidden_act="gelu",
layer_norm_eps=1e-5,
attention_dropout=0.0,
initializer_range=1e-10,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.projection_dim = projection_dim
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.patch_size = patch_size
self.image_size = image_size
self.initializer_range = initializer_range
self.attention_dropout = attention_dropout
self.layer_norm_eps = layer_norm_eps
self.hidden_act = hidden_act
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path: Union[str, os.PathLike], **kwargs) -> "PretrainedConfig":
cls._set_token_in_kwargs(kwargs)
config_dict, kwargs = cls.get_config_dict(pretrained_model_name_or_path, **kwargs)
# get the vision config dict if we are loading from BlipConfig
if config_dict.get("model_type") == "blip":
config_dict = config_dict["vision_config"]
if "model_type" in config_dict and hasattr(cls, "model_type") and config_dict["model_type"] != cls.model_type:
logger.warning(
f"You are using a model of type {config_dict['model_type']} to instantiate a model of type "
f"{cls.model_type}. This is not supported for all configurations of models and can yield errors."
)
return cls.from_dict(config_dict, **kwargs)
class BlipConfig(PretrainedConfig):
r"""
[`BlipConfig`] is the configuration class to store the configuration of a [`BlipModel`]. It is used to instantiate
a BLIP model according to the specified arguments, defining the text model and vision model configs. Instantiating
a configuration with the defaults will yield a similar configuration to that of the BLIP-base
[Salesforce/blip-vqa-base](https://huggingface.co/Salesforce/blip-vqa-base) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
text_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`BlipTextConfig`].
vision_config (`dict`, *optional*):
Dictionary of configuration options used to initialize [`BlipVisionConfig`].
projection_dim (`int`, *optional*, defaults to 512):
Dimentionality of text and vision projection layers.
logit_scale_init_value (`float`, *optional*, defaults to 2.6592):
The inital value of the *logit_scale* paramter. Default is used as per the original BLIP implementation.
image_text_hidden_size (`int`, *optional*, defaults to 256):
Dimentionality of the hidden state of the image-text fusion layer.
label_smoothing (float, optional, *optional*, defaults to 0.0):
A float in [0.0, 1.0]. Specifies the amount of smoothing when computing the loss, where 0.0 means no smoothing. The targets
become a mixture of the original ground truth and a uniform distribution as described in
`Rethinking the Inception Architecture for Computer Vision <https://arxiv.org/abs/1512.00567>`__. Default: :math:`0.0`.
kwargs (*optional*):
Dictionary of keyword arguments.
Example:
```python
>>> from transformers import BlipConfig, BlipModel
>>> # Initializing a BlipConfig with Salesforce/blip-vqa-base style configuration
>>> configuration = BlipConfig()
>>> # Initializing a BlipPModel (with random weights) from the Salesforce/blip-vqa-base style configuration
>>> model = BlipModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
>>> # We can also initialize a BlipConfig from a BlipTextConfig and a BlipVisionConfig
>>> # Initializing a BLIPText and BLIPVision configuration
>>> config_text = BlipTextConfig()
>>> config_vision = BlipVisionConfig()
>>> config = BlipConfig.from_text_vision_configs(config_text, config_vision)
```"""
model_type = "blip"
def __init__(
self,
text_config=None,
vision_config=None,
projection_dim=512,
logit_scale_init_value=2.6592,
image_text_hidden_size=256,
label_smoothing=0.0,
**kwargs,
):
super().__init__(**kwargs)
if text_config is None:
text_config = {}
logger.info("`text_config` is `None`. Initializing the `BlipTextConfig` with default values.")
if vision_config is None:
vision_config = {}
logger.info("`vision_config` is `None`. Initializing the `BlipVisionConfig` with default values.")
self.text_config = BlipTextConfig(**text_config)
self.vision_config = BlipVisionConfig(**vision_config)
self.text_config.encoder_hidden_size = self.vision_config.hidden_size
self.projection_dim = projection_dim
self.logit_scale_init_value = logit_scale_init_value
self.initializer_factor = 1.0
self.initializer_range = 0.02
self.image_text_hidden_size = image_text_hidden_size
self.label_smoothing = label_smoothing
@classmethod
def from_text_vision_configs(cls, text_config: BlipTextConfig, vision_config: BlipVisionConfig, **kwargs):
r"""
Instantiate a [`BlipConfig`] (or a derived class) from blip text model configuration and blip vision model
configuration.
Returns:
[`BlipConfig`]: An instance of a configuration object
"""
return cls(text_config=text_config.to_dict(), vision_config=vision_config.to_dict(), **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/image_processing_blip.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for BLIP."""
from typing import Dict, List, Optional, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import convert_to_rgb, resize, to_channel_dimension_format
from ...image_utils import (
OPENAI_CLIP_MEAN,
OPENAI_CLIP_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
validate_kwargs,
validate_preprocess_arguments,
)
from ...utils import TensorType, is_vision_available, logging
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
class BlipImageProcessor(BaseImageProcessor):
r"""
Constructs a BLIP image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`dict`, *optional*, defaults to `{"height": 384, "width": 384}`):
Size of the output image after resizing. Can be overridden by the `size` parameter in the `preprocess`
method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BICUBIC`):
Resampling filter to use if resizing the image. Only has an effect if `do_resize` is set to `True`. Can be
overridden by the `resample` parameter in the `preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the
`do_rescale` parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Only has an effect if `do_rescale` is set to `True`. Can be
overridden by the `rescale_factor` parameter in the `preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method. Can be overridden by the `do_normalize` parameter in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method. Can be
overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
Can be overridden by the `image_std` parameter in the `preprocess` method.
do_convert_rgb (`bool`, *optional*, defaults to `True`):
Whether to convert the image to RGB.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_convert_rgb: bool = True,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 384, "width": 384}
size = get_size_dict(size, default_to_square=True)
self.do_resize = do_resize
self.size = size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else OPENAI_CLIP_MEAN
self.image_std = image_std if image_std is not None else OPENAI_CLIP_STD
self.do_convert_rgb = do_convert_rgb
self._valid_processor_keys = [
"images",
"do_resize",
"size",
"resample",
"do_rescale",
"rescale_factor",
"do_normalize",
"image_mean",
"image_std",
"do_convert_rgb",
"return_tensors",
"data_format",
"input_data_format",
]
# Copied from transformers.models.vit.image_processing_vit.ViTImageProcessor.resize with PILImageResampling.BILINEAR->PILImageResampling.BICUBIC
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary in the format `{"height": int, "width": int}` specifying the size of the output image.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BICUBIC`.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
Returns:
`np.ndarray`: The resized image.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The `size` dictionary must contain the keys `height` and `width`. Got {size.keys()}")
output_size = (size["height"], size["width"])
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def preprocess(
self,
images: ImageInput,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
do_convert_rgb: bool = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Controls the size of the image after `resize`. The shortest edge of the image is resized to
`size["shortest_edge"]` whilst preserving the aspect ratio. If the longest edge of this resized image
is > `int(size["shortest_edge"] * (1333 / 800))`, then the image is resized again to make the longest
edge equal to `int(size["shortest_edge"] * (1333 / 800))`.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. Only has an effect if `do_resize` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to normalize the image by if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to normalize the image by if `do_normalize` is set to `True`.
do_convert_rgb (`bool`, *optional*, defaults to `self.do_convert_rgb`):
Whether to convert the image to RGB.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
do_convert_rgb = do_convert_rgb if do_convert_rgb is not None else self.do_convert_rgb
size = size if size is not None else self.size
size = get_size_dict(size, default_to_square=False)
images = make_list_of_images(images)
validate_kwargs(captured_kwargs=kwargs.keys(), valid_processor_keys=self._valid_processor_keys)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_resize=do_resize,
size=size,
resample=resample,
)
# PIL RGBA images are converted to RGB
if do_convert_rgb:
images = [convert_to_rgb(image) for image in images]
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_resize:
images = [
self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
for image in images
]
if do_rescale:
images = [
self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
for image in images
]
if do_normalize:
images = [
self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
encoded_outputs = BatchFeature(data={"pixel_values": images}, tensor_type=return_tensors)
return encoded_outputs
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/blip/modeling_blip.py
|
# coding=utf-8
# Copyright 2022 The Salesforce Team Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch BLIP model."""
import warnings
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn.functional import normalize
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_blip import BlipConfig, BlipTextConfig, BlipVisionConfig
from .modeling_blip_text import BlipTextLMHeadModel, BlipTextModel
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "Salesforce/blip-vqa-base"
from ..deprecated._archive_maps import BLIP_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
# Copied from transformers.models.clip.modeling_clip.contrastive_loss
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
return nn.functional.cross_entropy(logits, torch.arange(len(logits), device=logits.device))
# Copied from transformers.models.clip.modeling_clip.clip_loss with clip->blip
def blip_loss(similarity: torch.Tensor) -> torch.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(similarity.t())
return (caption_loss + image_loss) / 2.0
@dataclass
class BlipForConditionalGenerationModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder.
Args:
loss (`torch.FloatTensor`, *optional*, returned when `labels` is provided, `torch.FloatTensor` of shape `(1,)`):
Languge modeling loss from the text decoder.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`, *optional*):
Prediction scores of the language modeling head of the text decoder model.
image_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim)`, *optional*):
The image embeddings obtained after applying the Vision Transformer model to the input image.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[Tuple[torch.FloatTensor]] = None
logits: Optional[Tuple[torch.FloatTensor]] = None
image_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@property
def decoder_logits(self):
warnings.warn(
"`decoder_logits` attribute is deprecated and will be removed in version 5 of Transformers."
" Please use the `logits` attribute to retrieve the final output instead.",
FutureWarning,
)
return self.logits
@dataclass
class BlipTextVisionModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Languge modeling loss from the text decoder.
image_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
image_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class BlipImageTextMatchingModelOutput(ModelOutput):
"""
Adapted from the base class for vision model's outputs that also contains image embeddings of the pooling of the
last hidden states. This class also adds the loss term from the text decoder as well as the image-text similarity
scores.
Args:
itm_score (`torch.FloatTensor`):
The image-text similarity scores.
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Languge modeling loss from the text decoder.
image_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
vision_pooler_output (`torch.FloatTensor` of shape `(batch_size, hidden_size)`, *optional*):
Last layer hidden-state of the vision of the vision-only branch of the model.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
question_embeds (`torch.FloatTensor`):
The question embeddings obtained by the text projection layer.
"""
itm_score: Optional[torch.FloatTensor] = None
loss: Optional[torch.FloatTensor] = None
image_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
vision_pooler_output: Optional[torch.FloatTensor] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
question_embeds: Optional[Tuple[torch.FloatTensor]] = None
@dataclass
class BlipOutput(ModelOutput):
"""
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `return_loss` is `True`):
Contrastive loss for image-text similarity.
logits_per_image:(`torch.FloatTensor` of shape `(image_batch_size, text_batch_size)`):
The scaled dot product scores between `image_embeds` and `text_embeds`. This represents the image-text
similarity scores.
logits_per_text:(`torch.FloatTensor` of shape `(text_batch_size, image_batch_size)`):
The scaled dot product scores between `text_embeds` and `image_embeds`. This represents the text-image
similarity scores.
text_embeds(`torch.FloatTensor` of shape `(batch_size, output_dim`):
The text embeddings obtained by applying the projection layer to the pooled output of [`BlipTextModel`].
image_embeds(`torch.FloatTensor` of shape `(batch_size, output_dim`):
The image embeddings obtained by applying the projection layer to the pooled output of [`BlipVisionModel`].
text_model_output(`BaseModelOutputWithPooling`):
The output of the [`BlipTextModel`].
vision_model_output(`BaseModelOutputWithPooling`):
The output of the [`BlipVisionModel`].
"""
loss: Optional[torch.FloatTensor] = None
logits_per_image: torch.FloatTensor = None
logits_per_text: torch.FloatTensor = None
text_embeds: torch.FloatTensor = None
image_embeds: torch.FloatTensor = None
text_model_output: BaseModelOutputWithPooling = None
vision_model_output: BaseModelOutputWithPooling = None
def to_tuple(self) -> Tuple[Any]:
return tuple(
self[k] if k not in ["text_model_output", "vision_model_output"] else getattr(self, k).to_tuple()
for k in self.keys()
)
class BlipVisionEmbeddings(nn.Module):
def __init__(self, config: BlipVisionConfig):
super().__init__()
self.config = config
self.embed_dim = config.hidden_size
self.image_size = config.image_size
self.patch_size = config.patch_size
self.class_embedding = nn.Parameter(torch.randn(1, 1, self.embed_dim))
self.patch_embedding = nn.Conv2d(
in_channels=3, out_channels=self.embed_dim, kernel_size=self.patch_size, stride=self.patch_size
)
self.num_patches = (self.image_size // self.patch_size) ** 2
self.num_positions = self.num_patches + 1
self.position_embedding = nn.Parameter(torch.randn(1, self.num_positions, self.embed_dim))
def forward(self, pixel_values: torch.FloatTensor) -> torch.Tensor:
batch_size = pixel_values.shape[0]
target_dtype = self.patch_embedding.weight.dtype
patch_embeds = self.patch_embedding(pixel_values.to(dtype=target_dtype)) # shape = [*, width, grid, grid]
patch_embeds = patch_embeds.flatten(2).transpose(1, 2)
class_embeds = self.class_embedding.expand(batch_size, 1, -1).to(target_dtype)
embeddings = torch.cat([class_embeds, patch_embeds], dim=1)
embeddings = embeddings + self.position_embedding[:, : embeddings.size(1), :].to(target_dtype)
return embeddings
# Copied from transformers.models.clip.modeling_clip.CLIPTextEmbeddings with CLIP->Blip
class BlipTextEmbeddings(nn.Module):
def __init__(self, config: BlipTextConfig):
super().__init__()
embed_dim = config.hidden_size
self.token_embedding = nn.Embedding(config.vocab_size, embed_dim)
self.position_embedding = nn.Embedding(config.max_position_embeddings, embed_dim)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
) -> torch.Tensor:
seq_length = input_ids.shape[-1] if input_ids is not None else inputs_embeds.shape[-2]
if position_ids is None:
position_ids = self.position_ids[:, :seq_length]
if inputs_embeds is None:
inputs_embeds = self.token_embedding(input_ids)
position_embeddings = self.position_embedding(position_ids)
embeddings = inputs_embeds + position_embeddings
return embeddings
class BlipAttention(nn.Module):
"""Multi-headed attention from 'Attention Is All You Need' paper"""
def __init__(self, config):
super().__init__()
self.config = config
self.embed_dim = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
f" {self.num_heads})."
)
self.scale = self.head_dim**-0.5
self.dropout = nn.Dropout(config.attention_dropout)
self.qkv = nn.Linear(self.embed_dim, 3 * self.embed_dim)
self.projection = nn.Linear(self.embed_dim, self.embed_dim)
def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
"""Input shape: Batch x Time x Channel"""
bsz, tgt_len, embed_dim = hidden_states.size()
mixed_qkv = (
self.qkv(hidden_states)
.reshape(bsz, tgt_len, 3, self.num_heads, embed_dim // self.num_heads)
.permute(2, 0, 3, 1, 4)
)
query_states, key_states, value_states = mixed_qkv[0], mixed_qkv[1], mixed_qkv[2]
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_states, key_states.transpose(-1, -2))
attention_scores = attention_scores * self.scale
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_states).permute(0, 2, 1, 3)
new_context_layer_shape = context_layer.size()[:-2] + (self.embed_dim,)
context_layer = context_layer.reshape(new_context_layer_shape)
output = self.projection(context_layer)
outputs = (output, attention_probs) if output_attentions else (output, None)
return outputs
# Copied from transformers.models.clip.modeling_clip.CLIPMLP with CLIP->Blip
class BlipMLP(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.activation_fn = ACT2FN[config.hidden_act]
self.fc1 = nn.Linear(config.hidden_size, config.intermediate_size)
self.fc2 = nn.Linear(config.intermediate_size, config.hidden_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.fc1(hidden_states)
hidden_states = self.activation_fn(hidden_states)
hidden_states = self.fc2(hidden_states)
return hidden_states
class BlipEncoderLayer(nn.Module):
def __init__(self, config: BlipConfig):
super().__init__()
self.embed_dim = config.hidden_size
self.self_attn = BlipAttention(config)
self.layer_norm1 = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_eps)
self.mlp = BlipMLP(config)
self.layer_norm2 = nn.LayerNorm(self.embed_dim, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: torch.Tensor,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.FloatTensor]:
"""
Args:
hidden_states (`torch.FloatTensor`): input to the layer of shape `(batch, seq_len, embed_dim)`
attention_mask (`torch.FloatTensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
`(config.encoder_attention_heads,)`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
"""
residual = hidden_states
hidden_states = self.layer_norm1(hidden_states)
hidden_states, attn_weights = self.self_attn(
hidden_states=hidden_states,
head_mask=attention_mask,
output_attentions=output_attentions,
)
hidden_states = hidden_states + residual
residual = hidden_states
hidden_states = self.layer_norm2(hidden_states)
hidden_states = self.mlp(hidden_states)
hidden_states = hidden_states + residual
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class BlipPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BlipConfig
base_model_prefix = "blip"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
factor = self.config.initializer_range
if isinstance(module, nn.Conv2d) or isinstance(module, nn.Embedding) or isinstance(module, nn.Linear):
module.weight.data.normal_(mean=0.0, std=factor)
if hasattr(module, "bias") and module.bias is not None:
module.bias.data.zero_()
if isinstance(module, BlipVisionEmbeddings):
if hasattr(self.config, "vision_config"):
factor = self.config.vision_config.initializer_range
nn.init.trunc_normal_(
module.position_embedding,
mean=0.0,
std=factor,
)
nn.init.trunc_normal_(
module.class_embedding,
mean=0.0,
std=factor,
)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
elif isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
BLIP_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`BlipConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
BLIP_TEXT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoProcessor`]. See [`BlipProcessor.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BLIP_VISION_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`BlipImageProcessor`]. See [`BlipImageProcessor.__call__`] for details.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
BLIP_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you provide
it.
Indices can be obtained using [`AutoProcessor`]. See [`BlipProcessor.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Padding will be ignored by default should you provide it. Pixel values can be obtained using
[`BlipImageProcessor`]. See [`BlipImageProcessor.__call__`] for details.
return_loss (`bool`, *optional*):
Whether or not to return the contrastive loss.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class BlipEncoder(nn.Module):
"""
Transformer encoder consisting of `config.num_hidden_layers` self attention layers. Each layer is a
[`BlipEncoderLayer`].
Args:
config (`BlipConfig`):
The corresponding vision configuration for the `BlipEncoder`.
"""
def __init__(self, config: BlipConfig):
super().__init__()
self.config = config
self.layers = nn.ModuleList([BlipEncoderLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
inputs_embeds,
attention_mask: Optional[torch.Tensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
r"""
Args:
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Embedded representation of the inputs. Should be float, not int tokens.
attention_mask (`torch.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under
returned tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors
for more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
encoder_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
hidden_states = inputs_embeds
for idx, encoder_layer in enumerate(self.layers):
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
encoder_layer.__call__,
hidden_states,
attention_mask,
output_attentions,
)
else:
layer_outputs = encoder_layer(
hidden_states,
attention_mask,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
encoder_states = encoder_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
class BlipVisionModel(BlipPreTrainedModel):
main_input_name = "pixel_values"
config_class = BlipVisionConfig
def __init__(self, config: BlipVisionConfig):
super().__init__(config)
self.config = config
embed_dim = config.hidden_size
self.embeddings = BlipVisionEmbeddings(config)
self.encoder = BlipEncoder(config)
self.post_layernorm = nn.LayerNorm(embed_dim, eps=config.layer_norm_eps)
self.post_init()
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BaseModelOutputWithPooling, config_class=BlipVisionConfig)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPooling]:
r"""
Returns:
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
hidden_states = self.embeddings(pixel_values)
encoder_outputs = self.encoder(
inputs_embeds=hidden_states,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
last_hidden_state = encoder_outputs[0]
last_hidden_state = self.post_layernorm(last_hidden_state)
pooled_output = last_hidden_state[:, 0, :]
pooled_output = self.post_layernorm(pooled_output)
if not return_dict:
return (last_hidden_state, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPooling(
last_hidden_state=last_hidden_state,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
def get_input_embeddings(self):
return self.embeddings
@add_start_docstrings(BLIP_START_DOCSTRING)
class BlipModel(BlipPreTrainedModel):
config_class = BlipConfig
def __init__(self, config: BlipConfig):
super().__init__(config)
if not isinstance(config.text_config, BlipTextConfig):
raise ValueError(
"config.text_config is expected to be of type BlipTextConfig but is of type"
f" {type(config.text_config)}."
)
if not isinstance(config.vision_config, BlipVisionConfig):
raise ValueError(
"config.vision_config is expected to be of type BlipVisionConfig but is of type"
f" {type(config.vision_config)}."
)
text_config = config.text_config
vision_config = config.vision_config
self.projection_dim = config.projection_dim
self.text_embed_dim = text_config.hidden_size
self.vision_embed_dim = vision_config.hidden_size
self.text_model = BlipTextModel(text_config)
self.vision_model = BlipVisionModel(vision_config)
self.visual_projection = nn.Linear(self.vision_embed_dim, self.projection_dim, bias=False)
self.text_projection = nn.Linear(self.text_embed_dim, self.projection_dim, bias=False)
self.logit_scale = nn.Parameter(torch.tensor(self.config.logit_scale_init_value))
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(BLIP_TEXT_INPUTS_DOCSTRING)
def get_text_features(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
) -> torch.FloatTensor:
r"""
Returns:
text_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The text embeddings obtained by
applying the projection layer to the pooled output of [`BlipTextModel`].
Examples:
```python
>>> from transformers import AutoProcessor, BlipModel
>>> model = BlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> inputs = processor(text=["a photo of a cat", "a photo of a dog"], padding=True, return_tensors="pt")
>>> text_features = model.get_text_features(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
return_dict=return_dict,
)
pooled_output = text_outputs[1]
text_features = self.text_projection(pooled_output)
return text_features
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
def get_image_features(
self,
pixel_values: Optional[torch.FloatTensor] = None,
return_dict: Optional[bool] = None,
) -> torch.FloatTensor:
r"""
Returns:
image_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The image embeddings obtained by
applying the projection layer to the pooled output of [`BlipVisionModel`].
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipModel
>>> model = BlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(images=image, return_tensors="pt")
>>> image_features = model.get_image_features(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(pixel_values=pixel_values, return_dict=return_dict)
pooled_output = vision_outputs[1] # pooled_output
image_features = self.visual_projection(pooled_output)
return image_features
@add_start_docstrings_to_model_forward(BLIP_INPUTS_DOCSTRING)
def get_multimodal_features(
self,
input_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
return_dict: Optional[bool] = None,
) -> torch.FloatTensor:
r"""
Returns:
multimodal_features (`torch.FloatTensor` of shape `(batch_size, output_dim`): The multimodal embeddings
obtained by applying the image embeddings to the text encoder using the cross-attention mechanism.
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipModel
>>> model = BlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> texts = ["a photo of a cat", "a photo of a dog"]
>>> inputs = processor(images=image, text=texts, padding=True, return_tensors="pt")
>>> multimodal_features = model.get_multimodal_features(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=True,
output_hidden_states=True,
return_dict=return_dict,
)
image_embeds = vision_outputs[0]
image_atts = torch.ones(image_embeds.size()[:-1], dtype=torch.long)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_atts,
return_dict=return_dict,
)
pooled_output = text_outputs[1] # pooled_output
multimodal_features = self.text_projection(pooled_output)
return multimodal_features
@add_start_docstrings_to_model_forward(BLIP_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BlipOutput, config_class=BlipConfig)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
pixel_values: Optional[torch.FloatTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
return_loss: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BlipOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipModel
>>> model = BlipModel.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(
... text=["a photo of a cat", "a photo of a dog"], images=image, return_tensors="pt", padding=True
... )
>>> outputs = model(**inputs)
>>> logits_per_image = outputs.logits_per_image # this is the image-text similarity score
>>> probs = logits_per_image.softmax(dim=1) # we can take the softmax to get the label probabilities
```"""
# Use BLIP model's config for some fields (if specified) instead of those of vision & text components.
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
text_outputs = self.text_model(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[1]
image_embeds = self.visual_projection(image_embeds)
text_embeds = text_outputs[1]
text_embeds = self.text_projection(text_embeds)
# normalized features
image_embeds = image_embeds / image_embeds.norm(p=2, dim=-1, keepdim=True)
text_embeds = text_embeds / text_embeds.norm(p=2, dim=-1, keepdim=True)
# cosine similarity as logits
logit_scale = self.logit_scale.exp()
logits_per_text = torch.matmul(text_embeds, image_embeds.t()) * logit_scale
logits_per_image = logits_per_text.t()
loss = None
if return_loss:
loss = blip_loss(logits_per_text)
if not return_dict:
output = (logits_per_image, logits_per_text, text_embeds, image_embeds, text_outputs, vision_outputs)
return ((loss,) + output) if loss is not None else output
return BlipOutput(
loss=loss,
logits_per_image=logits_per_image,
logits_per_text=logits_per_text,
text_embeds=text_embeds,
image_embeds=image_embeds,
text_model_output=text_outputs,
vision_model_output=vision_outputs,
)
@add_start_docstrings(
"""
BLIP Model for image captioning. The model consists of a vision encoder and a text decoder. One can optionally pass
`input_ids` to the model, which serve as a text prompt, to make the text decoder continue the prompt. Otherwise,
the decoder starts generating text from the [BOS] (beginning-of-sequence) token. will start generating the caption
from the text input. If no text input is provided, the decoder will start with the [BOS] token only.
""",
BLIP_START_DOCSTRING,
)
class BlipForConditionalGeneration(BlipPreTrainedModel):
config_class = BlipConfig
_tied_weights_keys = ["text_decoder.cls.predictions.decoder.bias"]
main_input_name = "pixel_values"
def __init__(self, config: BlipConfig):
super().__init__(config)
self.vision_model = BlipVisionModel(config.vision_config)
self.text_decoder = BlipTextLMHeadModel(config.text_config)
self.decoder_input_ids = config.text_config.bos_token_id
self.decoder_pad_token_id = config.text_config.pad_token_id
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.vision_model.embeddings.patch_embedding
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BlipForConditionalGenerationModelOutput, config_class=BlipVisionConfig)
def forward(
self,
pixel_values: torch.FloatTensor,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BlipForConditionalGenerationModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipForConditionalGeneration
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> model = BlipForConditionalGeneration.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "A picture of"
>>> inputs = processor(images=image, text=text, return_tensors="pt")
>>> outputs = model(**inputs)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[0]
outputs = self.text_decoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
labels=labels,
return_dict=return_dict,
reduction="mean",
)
if not return_dict:
outputs = (outputs[0], outputs[1], image_embeds, vision_outputs[0]) + vision_outputs[2:]
return tuple(output for output in outputs if output is not None)
return BlipForConditionalGenerationModelOutput(
loss=outputs.loss,
logits=outputs.logits,
image_embeds=image_embeds,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
)
@torch.no_grad()
def generate(
self,
pixel_values: torch.FloatTensor,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
**generate_kwargs,
) -> torch.LongTensor:
r"""
Overrides *generate* function to be able to use the model as a conditional generator
Parameters:
pixel_values (*torch.FloatTensor* of shape *(batch_size, num_channels, image_height, image_width)*:
Input image to be processed
input_ids (*torch.LongTensor* of shape *(batch_size, sequence_length)*, *optional*):
The sequence used as a prompt for the generation.
attention_mask (*torch.LongTensor* of shape *(batch_size, sequence_length)*, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipForConditionalGeneration
>>> model = BlipForConditionalGeneration.from_pretrained("Salesforce/blip-image-captioning-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-image-captioning-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> inputs = processor(images=image, return_tensors="pt")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
two cats sleeping on a couch
```
"""
batch_size = pixel_values.shape[0]
vision_outputs = self.vision_model(pixel_values=pixel_values)
image_embeds = vision_outputs[0]
image_attention_mask = torch.ones(image_embeds.size()[:-1], dtype=torch.long).to(image_embeds.device)
if isinstance(input_ids, list):
input_ids = torch.LongTensor(input_ids)
elif input_ids is None:
input_ids = (
torch.LongTensor([[self.decoder_input_ids, self.config.text_config.eos_token_id]])
.repeat(batch_size, 1)
.to(image_embeds.device)
)
input_ids[:, 0] = self.config.text_config.bos_token_id
attention_mask = attention_mask[:, :-1] if attention_mask is not None else None
outputs = self.text_decoder.generate(
input_ids=input_ids[:, :-1],
eos_token_id=self.config.text_config.sep_token_id,
pad_token_id=self.config.text_config.pad_token_id,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
**generate_kwargs,
)
return outputs
@add_start_docstrings(
"""
BLIP Model for visual question answering. The model consists of a vision encoder, a text encoder as well as a text
decoder. The vision encoder will encode the input image, the text encoder will encode the input question together
with the encoding of the image, and the text decoder will output the answer to the question.
""",
BLIP_START_DOCSTRING,
)
class BlipForQuestionAnswering(BlipPreTrainedModel):
config_class = BlipConfig
_tied_weights_keys = ["text_decoder.cls.predictions.decoder.bias"]
def __init__(self, config: BlipConfig):
super().__init__(config)
self.vision_model = BlipVisionModel(config.vision_config)
self.text_encoder = BlipTextModel(config.text_config, add_pooling_layer=False)
self.text_decoder = BlipTextLMHeadModel(config.text_config)
self.decoder_pad_token_id = config.text_config.pad_token_id
self.decoder_start_token_id = config.text_config.bos_token_id
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.vision_model.embeddings.patch_embedding
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BlipTextVisionModelOutput, config_class=BlipVisionConfig)
def forward(
self,
input_ids: torch.LongTensor,
pixel_values: torch.FloatTensor,
decoder_input_ids: Optional[torch.LongTensor] = None,
decoder_attention_mask: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
labels: Optional[torch.LongTensor] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BlipTextVisionModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipForQuestionAnswering
>>> model = BlipForQuestionAnswering.from_pretrained("Salesforce/blip-vqa-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-vqa-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> # training
>>> text = "How many cats are in the picture?"
>>> label = "2"
>>> inputs = processor(images=image, text=text, return_tensors="pt")
>>> labels = processor(text=label, return_tensors="pt").input_ids
>>> inputs["labels"] = labels
>>> outputs = model(**inputs)
>>> loss = outputs.loss
>>> loss.backward()
>>> # inference
>>> text = "How many cats are in the picture?"
>>> inputs = processor(images=image, text=text, return_tensors="pt")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
2
```"""
if labels is None and decoder_input_ids is None:
raise ValueError(
"Either `decoder_input_ids` or `labels` should be passed when calling `forward` with"
" `BlipForQuestionAnswering`. if you are training the model make sure that `labels` is passed, if you"
" are using the model for inference make sure that `decoder_input_ids` is passed or call `generate`"
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[0]
image_attention_mask = torch.ones(image_embeds.size()[:-1], dtype=torch.long)
question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
return_dict=return_dict,
)
if labels is not None and decoder_input_ids is None:
# labels are already shifted right, see: https://github.com/huggingface/transformers/pull/23153
decoder_input_ids = labels
question_embeds = question_embeds[0] if not return_dict else question_embeds.last_hidden_state
answer_output = self.text_decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
encoder_hidden_states=question_embeds,
encoder_attention_mask=attention_mask,
labels=labels,
return_dict=return_dict,
reduction="mean",
)
if labels is not None:
decoder_loss = answer_output.loss.mean() if return_dict else answer_output[0].mean()
else:
decoder_loss = None
if not return_dict:
outputs = (decoder_loss, image_embeds, vision_outputs[0]) + vision_outputs[2:]
return tuple(output for output in outputs if output is not None)
return BlipTextVisionModelOutput(
loss=decoder_loss,
image_embeds=image_embeds,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
)
@torch.no_grad()
def generate(
self,
input_ids: torch.LongTensor,
pixel_values: torch.FloatTensor,
attention_mask: Optional[torch.LongTensor] = None,
**generate_kwargs,
) -> torch.LongTensor:
r"""
Overrides *generate* function to be able to use the model as a conditional generator
Parameters:
input_ids (*torch.LongTensor* of shape *(batch_size, sequence_length)*):
The sequence used as a prompt for the generation.
pixel_values (*torch.FloatTensor* of shape *(batch_size, num_channels, image_height, image_width)*:
Input image to be processed
attention_mask (*torch.LongTensor* of shape *(batch_size, sequence_length)*, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`. `1` for
tokens that are NOT MASKED, `0` for MASKED tokens.
**generate_kwargs:
Additional arguments passed to the *generate* function of the decoder
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipForQuestionAnswering
>>> model = BlipForQuestionAnswering.from_pretrained("Salesforce/blip-vqa-base")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-vqa-base")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "How many cats are in the picture?"
>>> inputs = processor(images=image, text=text, return_tensors="pt")
>>> outputs = model.generate(**inputs)
>>> print(processor.decode(outputs[0], skip_special_tokens=True))
2
```
"""
vision_outputs = self.vision_model(pixel_values=pixel_values)
image_embeds = vision_outputs[0]
image_attention_mask = torch.ones(image_embeds.size()[:-1], dtype=torch.long).to(image_embeds.device)
if isinstance(input_ids, list):
input_ids = torch.LongTensor(input_ids)
question_outputs = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_attention_mask,
return_dict=False,
)
question_embeds = question_outputs[0]
question_attention_mask = torch.ones(question_embeds.size()[:-1], dtype=torch.long).to(question_embeds.device)
bos_ids = torch.full(
(question_embeds.size(0), 1), fill_value=self.decoder_start_token_id, device=question_embeds.device
)
outputs = self.text_decoder.generate(
input_ids=bos_ids,
eos_token_id=self.config.text_config.sep_token_id,
pad_token_id=self.config.text_config.pad_token_id,
encoder_hidden_states=question_embeds,
encoder_attention_mask=question_attention_mask,
**generate_kwargs,
)
return outputs
@add_start_docstrings(
"""
BLIP Model with a vision and text projector, and a classification head on top. The model is used in the context of
image-text retrieval. Given an image and a text, the model returns the probability of the text being relevant to
the image.
""",
BLIP_START_DOCSTRING,
)
class BlipForImageTextRetrieval(BlipPreTrainedModel):
config_class = BlipConfig
def __init__(self, config: BlipConfig):
super().__init__(config)
self.vision_model = BlipVisionModel(config.vision_config)
self.text_encoder = BlipTextModel(config.text_config, add_pooling_layer=False)
# vision projection layer
self.vision_proj = nn.Linear(config.vision_config.hidden_size, config.image_text_hidden_size)
# text projection layer
self.text_proj = nn.Linear(config.text_config.hidden_size, config.image_text_hidden_size)
# image text matching head
self.itm_head = nn.Linear(config.text_config.hidden_size, 2)
self.decoder_pad_token_id = (
config.text_config.pad_token_id
if not hasattr(config, "decoder_pad_token_id")
else config.decoder_pad_token_id
)
self.decoder_start_token_id = (
config.text_config.bos_token_id
if not hasattr(config, "decoder_start_token_id")
else config.decoder_start_token_id
)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self) -> nn.Module:
return self.vision_model.embeddings.patch_embedding
@add_start_docstrings_to_model_forward(BLIP_VISION_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=BlipTextVisionModelOutput, config_class=BlipVisionConfig)
def forward(
self,
input_ids: torch.LongTensor,
pixel_values: torch.FloatTensor,
use_itm_head: Optional[bool] = True,
attention_mask: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BlipTextVisionModelOutput]:
r"""
Returns:
Examples:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoProcessor, BlipForImageTextRetrieval
>>> model = BlipForImageTextRetrieval.from_pretrained("Salesforce/blip-itm-base-coco")
>>> processor = AutoProcessor.from_pretrained("Salesforce/blip-itm-base-coco")
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> text = "an image of a cat"
>>> inputs = processor(images=image, text=text, return_tensors="pt")
>>> outputs = model(**inputs)
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
vision_outputs = self.vision_model(
pixel_values=pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeds = vision_outputs[0]
image_atts = torch.ones(image_embeds.size()[:-1], dtype=torch.long)
if use_itm_head:
question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=image_embeds,
encoder_attention_mask=image_atts,
return_dict=return_dict,
)
question_embeds = question_embeds[0] if not return_dict else question_embeds.last_hidden_state
output = self.itm_head(question_embeds[:, 0, :])
else:
question_embeds = self.text_encoder(
input_ids=input_ids,
attention_mask=attention_mask,
return_dict=return_dict,
)
question_embeds = question_embeds[0] if not return_dict else question_embeds.last_hidden_state
image_feat = normalize(self.vision_proj(image_embeds[:, 0, :]), dim=-1)
text_feat = normalize(self.text_proj(question_embeds[:, 0, :]), dim=-1)
output = image_feat @ text_feat.t()
if not return_dict:
outputs = (output, vision_outputs[0]) + vision_outputs[2:] + (question_embeds,)
return tuple(output for output in outputs if output is not None)
return BlipImageTextMatchingModelOutput(
itm_score=output,
last_hidden_state=vision_outputs.last_hidden_state,
hidden_states=vision_outputs.hidden_states,
attentions=vision_outputs.attentions,
question_embeds=question_embeds,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/configuration_esm.py
|
# coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" ESM model configuration"""
from dataclasses import asdict, dataclass
from typing import Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
# TODO Update this
from ..deprecated._archive_maps import ESM_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class EsmConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`ESMModel`]. It is used to instantiate a ESM model
according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the ESM
[facebook/esm-1b](https://huggingface.co/facebook/esm-1b) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*):
Vocabulary size of the ESM model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`ESMModel`].
mask_token_id (`int`, *optional*):
The index of the mask token in the vocabulary. This must be included in the config because of the
"mask-dropout" scaling trick, which will scale the inputs depending on the number of masked tokens.
pad_token_id (`int`, *optional*):
The index of the padding token in the vocabulary. This must be included in the config because certain parts
of the ESM code use this instead of the attention mask.
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (often named feed-forward) layer in the Transformer encoder.
hidden_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention probabilities.
max_position_embeddings (`int`, *optional*, defaults to 1026):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
position_embedding_type (`str`, *optional*, defaults to `"absolute"`):
Type of position embedding. Choose one of `"absolute"`, `"relative_key"`, `"relative_key_query", "rotary"`.
For positional embeddings use `"absolute"`. For more information on `"relative_key"`, please refer to
[Self-Attention with Relative Position Representations (Shaw et al.)](https://arxiv.org/abs/1803.02155).
For more information on `"relative_key_query"`, please refer to *Method 4* in [Improve Transformer Models
with Better Relative Position Embeddings (Huang et al.)](https://arxiv.org/abs/2009.13658).
is_decoder (`bool`, *optional*, defaults to `False`):
Whether the model is used as a decoder or not. If `False`, the model is used as an encoder.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
emb_layer_norm_before (`bool`, *optional*):
Whether to apply layer normalization after embeddings but before the main stem of the network.
token_dropout (`bool`, defaults to `False`):
When this is enabled, masked tokens are treated as if they had been dropped out by input dropout.
Examples:
```python
>>> from transformers import EsmModel, EsmConfig
>>> # Initializing a ESM facebook/esm-1b style configuration >>> configuration = EsmConfig()
>>> # Initializing a model from the configuration >>> model = ESMModel(configuration)
>>> # Accessing the model configuration >>> configuration = model.config
```"""
model_type = "esm"
def __init__(
self,
vocab_size=None,
mask_token_id=None,
pad_token_id=None,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=1026,
initializer_range=0.02,
layer_norm_eps=1e-12,
position_embedding_type="absolute",
use_cache=True,
emb_layer_norm_before=None,
token_dropout=False,
is_folding_model=False,
esmfold_config=None,
vocab_list=None,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, mask_token_id=mask_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.position_embedding_type = position_embedding_type
self.use_cache = use_cache
self.emb_layer_norm_before = emb_layer_norm_before
self.token_dropout = token_dropout
self.is_folding_model = is_folding_model
if is_folding_model:
if esmfold_config is None:
logger.info("No esmfold_config supplied for folding model, using default values.")
esmfold_config = EsmFoldConfig()
elif isinstance(esmfold_config, dict):
esmfold_config = EsmFoldConfig(**esmfold_config)
self.esmfold_config = esmfold_config
if vocab_list is None:
logger.warning("No vocab_list supplied for folding model, assuming the ESM-2 vocabulary!")
self.vocab_list = get_default_vocab_list()
else:
self.vocab_list = vocab_list
else:
self.esmfold_config = None
self.vocab_list = None
if self.esmfold_config is not None and getattr(self.esmfold_config, "use_esm_attn_map", False):
raise ValueError("The HuggingFace port of ESMFold does not support use_esm_attn_map at this time!")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = super().to_dict()
if isinstance(self.esmfold_config, EsmFoldConfig):
output["esmfold_config"] = self.esmfold_config.to_dict()
return output
@dataclass
class EsmFoldConfig:
esm_type: str = None
fp16_esm: bool = True
use_esm_attn_map: bool = False
esm_ablate_pairwise: bool = False
esm_ablate_sequence: bool = False
esm_input_dropout: float = 0
embed_aa: bool = True
bypass_lm: bool = False
lddt_head_hid_dim: int = 128
trunk: "TrunkConfig" = None
def __post_init__(self):
if self.trunk is None:
self.trunk = TrunkConfig()
elif isinstance(self.trunk, dict):
self.trunk = TrunkConfig(**self.trunk)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["trunk"] = self.trunk.to_dict()
return output
@dataclass
class TrunkConfig:
num_blocks: int = 48
sequence_state_dim: int = 1024
pairwise_state_dim: int = 128
sequence_head_width: int = 32
pairwise_head_width: int = 32
position_bins: int = 32
dropout: float = 0
layer_drop: float = 0
cpu_grad_checkpoint: bool = False
max_recycles: int = 4
chunk_size: Optional[int] = 128
structure_module: "StructureModuleConfig" = None
def __post_init__(self):
if self.structure_module is None:
self.structure_module = StructureModuleConfig()
elif isinstance(self.structure_module, dict):
self.structure_module = StructureModuleConfig(**self.structure_module)
if self.max_recycles <= 0:
raise ValueError(f"`max_recycles` should be positive, got {self.max_recycles}.")
if self.sequence_state_dim % self.sequence_state_dim != 0:
raise ValueError(
"`sequence_state_dim` should be a round multiple of `sequence_state_dim`, got"
f" {self.sequence_state_dim} and {self.sequence_state_dim}."
)
if self.pairwise_state_dim % self.pairwise_state_dim != 0:
raise ValueError(
"`pairwise_state_dim` should be a round multiple of `pairwise_state_dim`, got"
f" {self.pairwise_state_dim} and {self.pairwise_state_dim}."
)
sequence_num_heads = self.sequence_state_dim // self.sequence_head_width
pairwise_num_heads = self.pairwise_state_dim // self.pairwise_head_width
if self.sequence_state_dim != sequence_num_heads * self.sequence_head_width:
raise ValueError(
"`sequence_state_dim` should be equal to `sequence_num_heads * sequence_head_width, got"
f" {self.sequence_state_dim} != {sequence_num_heads} * {self.sequence_head_width}."
)
if self.pairwise_state_dim != pairwise_num_heads * self.pairwise_head_width:
raise ValueError(
"`pairwise_state_dim` should be equal to `pairwise_num_heads * pairwise_head_width, got"
f" {self.pairwise_state_dim} != {pairwise_num_heads} * {self.pairwise_head_width}."
)
if self.pairwise_state_dim % 2 != 0:
raise ValueError(f"`pairwise_state_dim` should be even, got {self.pairwise_state_dim}.")
if self.dropout >= 0.4:
raise ValueError(f"`dropout` should not be greater than 0.4, got {self.dropout}.")
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`].
Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = asdict(self)
output["structure_module"] = self.structure_module.to_dict()
return output
@dataclass
class StructureModuleConfig:
"""
Args:
sequence_dim:
Single representation channel dimension
pairwise_dim:
Pair representation channel dimension
ipa_dim:
IPA hidden channel dimension
resnet_dim:
Angle resnet (Alg. 23 lines 11-14) hidden channel dimension
num_heads_ipa:
Number of IPA heads
num_qk_points:
Number of query/key points to generate during IPA
num_v_points:
Number of value points to generate during IPA
dropout_rate:
Dropout rate used throughout the layer
num_blocks:
Number of structure module blocks
num_transition_layers:
Number of layers in the single representation transition (Alg. 23 lines 8-9)
num_resnet_blocks:
Number of blocks in the angle resnet
num_angles:
Number of angles to generate in the angle resnet
trans_scale_factor:
Scale of single representation transition hidden dimension
epsilon:
Small number used in angle resnet normalization
inf:
Large number used for attention masking
"""
sequence_dim: int = 384
pairwise_dim: int = 128
ipa_dim: int = 16
resnet_dim: int = 128
num_heads_ipa: int = 12
num_qk_points: int = 4
num_v_points: int = 8
dropout_rate: float = 0.1
num_blocks: int = 8
num_transition_layers: int = 1
num_resnet_blocks: int = 2
num_angles: int = 7
trans_scale_factor: int = 10
epsilon: float = 1e-8
inf: float = 1e5
def to_dict(self):
return asdict(self)
def get_default_vocab_list():
return (
"<cls>",
"<pad>",
"<eos>",
"<unk>",
"L",
"A",
"G",
"V",
"S",
"E",
"R",
"T",
"I",
"D",
"P",
"K",
"Q",
"N",
"F",
"Y",
"M",
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| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/modeling_esm.py
|
# coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
from ..deprecated._archive_maps import ESM_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
def rotate_half(x):
x1, x2 = x.chunk(2, dim=-1)
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : x.shape[-2], :]
sin = sin[:, :, : x.shape[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def gelu(x):
"""
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
"""
return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0)))
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + x.transpose(-1, -2)
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = x.sum(-1, keepdims=True)
a2 = x.sum(-2, keepdims=True)
a12 = x.sum((-1, -2), keepdims=True)
avg = a1 * a2
avg.div_(a12) # in-place to reduce memory
normalized = x - avg
return normalized
class RotaryEmbedding(torch.nn.Module):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int):
super().__init__()
# Generate and save the inverse frequency buffer (non trainable)
inv_freq = 1.0 / (10000 ** (torch.arange(0, dim, 2, dtype=torch.int64).float() / dim))
inv_freq = inv_freq
self.register_buffer("inv_freq", inv_freq)
self._seq_len_cached = None
self._cos_cached = None
self._sin_cached = None
def _update_cos_sin_tables(self, x, seq_dimension=2):
seq_len = x.shape[seq_dimension]
# Reset the tables if the sequence length has changed,
# or if we're on a new device (possibly due to tracing for instance)
if seq_len != self._seq_len_cached or self._cos_cached.device != x.device:
self._seq_len_cached = seq_len
t = torch.arange(x.shape[seq_dimension], device=x.device).type_as(self.inv_freq)
freqs = torch.outer(t, self.inv_freq)
emb = torch.cat((freqs, freqs), dim=-1).to(x.device)
self._cos_cached = emb.cos()[None, None, :, :]
self._sin_cached = emb.sin()[None, None, :, :]
return self._cos_cached, self._sin_cached
def forward(self, q: torch.Tensor, k: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
self._cos_cached, self._sin_cached = self._update_cos_sin_tables(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, self._cos_cached, self._sin_cached),
apply_rotary_pos_emb(k, self._cos_cached, self._sin_cached),
)
class EsmContactPredictionHead(nn.Module):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
):
super().__init__()
self.in_features = in_features
self.eos_idx = eos_idx
self.regression = nn.Linear(in_features, 1, bias)
self.activation = nn.Sigmoid()
def forward(self, tokens, attentions):
# remove eos token attentions
eos_mask = tokens.ne(self.eos_idx).to(attentions)
eos_mask = eos_mask.unsqueeze(1) * eos_mask.unsqueeze(2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = attentions.size()
attentions = attentions.view(batch_size, layers * heads, seqlen, seqlen)
# features: batch x channels x tokens x tokens (symmetric)
attentions = attentions.to(
self.regression.weight.device
) # attentions always float32, may need to convert to float16
attentions = average_product_correct(symmetrize(attentions))
attentions = attentions.permute(0, 2, 3, 1)
return self.activation(self.regression(attentions).squeeze(3))
class EsmEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
if config.emb_layer_norm_before:
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
else:
self.layer_norm = None
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer(
"position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)), persistent=False
)
self.padding_idx = config.pad_token_id
self.position_embeddings = nn.Embedding(
config.max_position_embeddings, config.hidden_size, padding_idx=self.padding_idx
)
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
def forward(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = embeddings.masked_fill((input_ids == self.mask_token_id).unsqueeze(-1), 0.0)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = attention_mask.sum(-1)
mask_ratio_observed = (input_ids == self.mask_token_id).sum(-1).float() / src_lengths
embeddings = (embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]).to(
embeddings.dtype
)
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings = embeddings + position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = (embeddings * attention_mask.unsqueeze(-1)).to(embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class EsmSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = RotaryEmbedding(dim=self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs.to(value_layer.dtype), value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class EsmSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = EsmSelfAttention(config)
self.output = EsmSelfOutput(config)
self.pruned_heads = set()
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class EsmIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = gelu(hidden_states)
return hidden_states
class EsmOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
class EsmLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = EsmAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = EsmAttention(config)
self.intermediate = EsmIntermediate(config)
self.output = EsmOutput(config)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = self.feed_forward_chunk(attention_output)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
attention_output_ln = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(attention_output_ln)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class EsmEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([EsmLayer(config) for _ in range(config.num_hidden_layers)])
self.emb_layer_norm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning_once(
"`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting "
"`use_cache=False`..."
)
use_cache = False
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache = next_decoder_cache + (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class EsmPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class EsmPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
supports_gradient_checkpointing = True
_no_split_modules = ["EsmLayer", "EsmFoldTriangularSelfAttentionBlock", "EsmEmbeddings"]
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
ESM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class EsmModel(EsmPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = EsmEmbeddings(config)
self.encoder = EsmEncoder(config)
self.pooler = EsmPooler(config) if add_pooling_layer else None
self.contact_head = EsmContactPredictionHead(
in_features=config.num_hidden_layers * config.num_attention_heads, bias=True
)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = torch.stack(attns, dim=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(3)
attns *= attention_mask.unsqueeze(1).unsqueeze(2).unsqueeze(4)
return self.contact_head(tokens, attns)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class EsmForMaskedLM(EsmPreTrainedModel):
_tied_weights_keys = ["lm_head.decoder.weight"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = EsmModel(config, add_pooling_layer=False)
self.lm_head = EsmLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, MaskedLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(prediction_scores.device)
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask=attention_mask)
class EsmLMHead(nn.Module):
"""ESM Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForSequenceClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = EsmModel(config, add_pooling_layer=False)
self.classifier = EsmClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
labels = labels.to(logits.device)
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(logits, labels)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class EsmForTokenClassification(EsmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = EsmModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TokenClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
labels = labels.to(logits.device)
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class EsmClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = torch.tanh(x)
x = self.dropout(x)
x = self.out_proj(x)
return x
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/modeling_esmfold.py
|
# coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...integrations.deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esmfold_v1"
_CONFIG_FOR_DOC = "EsmConfig"
@dataclass
class EsmForProteinFoldingOutput(ModelOutput):
"""
Output type of [`EsmForProteinFoldingOutput`].
Args:
frames (`torch.FloatTensor`):
Output frames.
sidechain_frames (`torch.FloatTensor`):
Output sidechain frames.
unnormalized_angles (`torch.FloatTensor`):
Predicted unnormalized backbone and side chain torsion angles.
angles (`torch.FloatTensor`):
Predicted backbone and side chain torsion angles.
positions (`torch.FloatTensor`):
Predicted positions of the backbone and side chain atoms.
states (`torch.FloatTensor`):
Hidden states from the protein folding trunk.
s_s (`torch.FloatTensor`):
Per-residue embeddings derived by concatenating the hidden states of each layer of the ESM-2 LM stem.
s_z (`torch.FloatTensor`):
Pairwise residue embeddings.
distogram_logits (`torch.FloatTensor`):
Input logits to the distogram used to compute residue distances.
lm_logits (`torch.FloatTensor`):
Logits output by the ESM-2 protein language model stem.
aatype (`torch.FloatTensor`):
Input amino acids (AlphaFold2 indices).
atom14_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom14 representation.
residx_atom14_to_atom37 (`torch.FloatTensor`):
Mapping between atoms in the atom14 and atom37 representations.
residx_atom37_to_atom14 (`torch.FloatTensor`):
Mapping between atoms in the atom37 and atom14 representations.
atom37_atom_exists (`torch.FloatTensor`):
Whether each atom exists in the atom37 representation.
residue_index (`torch.FloatTensor`):
The index of each residue in the protein chain. Unless internal padding tokens are used, this will just be
a sequence of integers from 0 to `sequence_length`.
lddt_head (`torch.FloatTensor`):
Raw outputs from the lddt head used to compute plddt.
plddt (`torch.FloatTensor`):
Per-residue confidence scores. Regions of low confidence may indicate areas where the model's prediction is
uncertain, or where the protein structure is disordered.
ptm_logits (`torch.FloatTensor`):
Raw logits used for computing ptm.
ptm (`torch.FloatTensor`):
TM-score output representing the model's high-level confidence in the overall structure.
aligned_confidence_probs (`torch.FloatTensor`):
Per-residue confidence scores for the aligned structure.
predicted_aligned_error (`torch.FloatTensor`):
Predicted error between the model's prediction and the ground truth.
max_predicted_aligned_error (`torch.FloatTensor`):
Per-sample maximum predicted error.
"""
frames: torch.FloatTensor = None
sidechain_frames: torch.FloatTensor = None
unnormalized_angles: torch.FloatTensor = None
angles: torch.FloatTensor = None
positions: torch.FloatTensor = None
states: torch.FloatTensor = None
s_s: torch.FloatTensor = None
s_z: torch.FloatTensor = None
distogram_logits: torch.FloatTensor = None
lm_logits: torch.FloatTensor = None
aatype: torch.FloatTensor = None
atom14_atom_exists: torch.FloatTensor = None
residx_atom14_to_atom37: torch.FloatTensor = None
residx_atom37_to_atom14: torch.FloatTensor = None
atom37_atom_exists: torch.FloatTensor = None
residue_index: torch.FloatTensor = None
lddt_head: torch.FloatTensor = None
plddt: torch.FloatTensor = None
ptm_logits: torch.FloatTensor = None
ptm: torch.FloatTensor = None
aligned_confidence_probs: torch.FloatTensor = None
predicted_aligned_error: torch.FloatTensor = None
max_predicted_aligned_error: torch.FloatTensor = None
ESMFOLD_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`torch.LongTensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
masking_pattern (`torch.LongTensor` of shape `({0})`, *optional*):
Locations of tokens to mask during training as a form of regularization. Mask values selected in `[0, 1]`.
num_recycles (`int`, *optional*, defaults to `None`):
Number of times to recycle the input sequence. If `None`, defaults to `config.num_recycles`. "Recycling"
consists of passing the output of the folding trunk back in as input to the trunk. During training, the
number of recycles should vary with each batch, to ensure that the model learns to output valid predictions
after each recycle. During inference, num_recycles should be set to the highest value that the model was
trained with for maximum accuracy. Accordingly, when this value is set to `None`, config.max_recycles is
used.
"""
def is_fp16_enabled():
# Autocast world
fp16_enabled = torch.get_autocast_gpu_dtype() == torch.float16
fp16_enabled = fp16_enabled and torch.is_autocast_enabled()
return fp16_enabled
def is_deepspeed_initialized():
if is_deepspeed_available():
return False
else:
try:
import deepspeed
# This is not available in all DeepSpeed versions.
return deepspeed.utils.is_initialized()
except Exception:
return False
def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor:
"""
Takes a list of tensors with the following dimensions:
[(d_11, ..., d_1K),
(d_21, ..., d_2K), ..., (d_N1, ..., d_NK)]
and stack + pads them into a single tensor of:
(N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
"""
if len(samples) == 0:
return torch.Tensor()
if len({x.dim() for x in samples}) != 1:
raise RuntimeError(f"Samples has varying dimensions: {[x.dim() for x in samples]}")
(device,) = tuple({x.device for x in samples}) # assumes all on same device
max_shape = [max(lst) for lst in zip(*[x.shape for x in samples])]
result = torch.empty(len(samples), *max_shape, dtype=samples[0].dtype, device=device)
result.fill_(pad_v)
for i in range(len(samples)):
result_i = result[i]
t = samples[i]
result_i[tuple(slice(0, k) for k in t.shape)] = t
return result
def flatten_final_dims(t: torch.Tensor, no_dims: int):
return t.reshape(t.shape[:-no_dims] + (-1,))
def permute_final_dims(tensor: torch.Tensor, inds: List[int]):
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def dict_multimap(fn, dicts):
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def trunc_normal_init_(weights, scale=1.0, fan="fan_in"):
shape = weights.shape
scale = scale / max(1, shape[1])
if not is_scipy_available():
logger.warning(
"This init requires scipy, but scipy was not found, default to an approximation that might not be"
" equivalent."
)
std = math.sqrt(scale)
torch.nn.init.normal_(weights, std=std).clamp(min=0.0, max=2.0 * std)
else:
from scipy.stats import truncnorm
std = math.sqrt(scale) / truncnorm.std(a=-2, b=2, loc=0, scale=1)
samples = truncnorm.rvs(a=-2, b=2, loc=0, scale=std, size=weights.numel())
samples = np.reshape(samples, shape)
weights.copy_(torch.tensor(samples, device=weights.device))
def ipa_point_weights_init_(weights):
with torch.no_grad():
softplus_inverse_1 = 0.541324854612918
weights.fill_(softplus_inverse_1)
class EsmFoldLinear(nn.Linear):
"""
A Linear layer with built-in nonstandard initializations. Called just like torch.nn.Linear.
Implements the initializers in 1.11.4, plus some additional ones found in the code.
"""
def __init__(
self,
in_dim: int,
out_dim: int,
bias: bool = True,
init: str = "default",
init_fn: Optional[Callable[[torch.Tensor, torch.Tensor], None]] = None,
):
"""
Args:
in_dim:
The final dimension of inputs to the layer
out_dim:
The final dimension of layer outputs
bias:
Whether to learn an additive bias. True by default
init:
The initializer to use. Choose from:
"default": LeCun fan-in truncated normal initialization "relu": He initialization w/ truncated normal
distribution "glorot": Fan-average Glorot uniform initialization "gating": Weights=0, Bias=1 "normal":
Normal initialization with std=1/sqrt(fan_in) "final": Weights=0, Bias=0
Overridden by init_fn if the latter is not None.
init_fn:
A custom initializer taking weight and bias as inputs. Overrides init if not None.
"""
super().__init__(in_dim, out_dim, bias=bias)
if bias:
with torch.no_grad():
self.bias.fill_(0)
self.init = init
self.init_fn = init_fn
if init not in ["default", "relu", "glorot", "gating", "normal", "final"]:
raise ValueError("Invalid init string.")
class EsmFoldLayerNorm(nn.Module):
def __init__(self, c_in, eps=1e-5):
super().__init__()
self.c_in = (c_in,)
self.eps = eps
self.weight = nn.Parameter(torch.ones(c_in))
self.bias = nn.Parameter(torch.zeros(c_in))
def forward(self, x):
d = x.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
out = nn.functional.layer_norm(x, self.c_in, self.weight.to(dtype=d), self.bias.to(dtype=d), self.eps)
else:
out = nn.functional.layer_norm(x, self.c_in, self.weight, self.bias, self.eps)
return out
@torch.jit.ignore
def softmax_no_cast(t: torch.Tensor, dim: int = -1) -> torch.Tensor:
"""
Softmax, but without automatic casting to fp32 when the input is of type bfloat16
"""
d = t.dtype
if d is torch.bfloat16 and not is_deepspeed_initialized():
with torch.cuda.amp.autocast(enabled=False):
s = torch.nn.functional.softmax(t, dim=dim)
else:
s = torch.nn.functional.softmax(t, dim=dim)
return s
class EsmFoldAttention(nn.Module):
"""
Standard multi-head attention using AlphaFold's default layer initialization. Allows multiple bias vectors.
"""
def __init__(
self,
c_q: int,
c_k: int,
c_v: int,
c_hidden: int,
no_heads: int,
gating: bool = True,
):
"""
Args:
c_q:
Input dimension of query data
c_k:
Input dimension of key data
c_v:
Input dimension of value data
c_hidden:
Per-head hidden dimension
no_heads:
Number of attention heads
gating:
Whether the output should be gated using query data
"""
super().__init__()
self.c_q = c_q
self.c_k = c_k
self.c_v = c_v
self.c_hidden = c_hidden
self.no_heads = no_heads
self.gating = gating
# DISCREPANCY: c_hidden is not the per-head channel dimension, as
# stated in the supplement, but the overall channel dimension.
self.linear_q = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_k = EsmFoldLinear(self.c_k, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_v = EsmFoldLinear(self.c_v, self.c_hidden * self.no_heads, bias=False, init="glorot")
self.linear_o = EsmFoldLinear(self.c_hidden * self.no_heads, self.c_q, init="final")
self.linear_g = None
if self.gating:
self.linear_g = EsmFoldLinear(self.c_q, self.c_hidden * self.no_heads, init="gating")
self.sigmoid = nn.Sigmoid()
def _prep_qkv(self, q_x: torch.Tensor, kv_x: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
# [*, Q/K/V, H * C_hidden]
q = self.linear_q(q_x)
k = self.linear_k(kv_x)
v = self.linear_v(kv_x)
# [*, Q/K, H, C_hidden]
q = q.view(q.shape[:-1] + (self.no_heads, -1))
k = k.view(k.shape[:-1] + (self.no_heads, -1))
v = v.view(v.shape[:-1] + (self.no_heads, -1))
# [*, H, Q/K, C_hidden]
q = q.transpose(-2, -3)
k = k.transpose(-2, -3)
v = v.transpose(-2, -3)
q /= math.sqrt(self.c_hidden)
return q, k, v
def _wrap_up(self, o: torch.Tensor, q_x: torch.Tensor) -> torch.Tensor:
if self.linear_g is not None:
g = self.sigmoid(self.linear_g(q_x))
# [*, Q, H, C_hidden]
g = g.view(g.shape[:-1] + (self.no_heads, -1))
o = o * g
# [*, Q, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, Q, C_q]
o = self.linear_o(o)
return o
def forward(
self,
q_x: torch.Tensor,
kv_x: torch.Tensor,
biases: Optional[List[torch.Tensor]] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
lma_q_chunk_size: int = 1024,
lma_kv_chunk_size: int = 4096,
use_flash: bool = False,
flash_mask: Optional[torch.Tensor] = None,
) -> torch.Tensor:
"""
Args:
q_x:
[*, Q, C_q] query data
kv_x:
[*, K, C_k] key data
biases:
List of biases that broadcast to [*, H, Q, K]
use_memory_efficient_kernel:
Whether to use a custom memory-efficient attention kernel. This should be the default choice for most.
If none of the "use_<...>" flags are True, a stock PyTorch implementation is used instead
use_lma:
Whether to use low-memory attention (Staats & Rabe 2021). If none of the "use_<...>" flags are True, a
stock PyTorch implementation is used instead
lma_q_chunk_size:
Query chunk size (for LMA)
lma_kv_chunk_size:
Key/Value chunk size (for LMA)
Returns
[*, Q, C_q] attention update
"""
if use_lma and (lma_q_chunk_size is None or lma_kv_chunk_size is None):
raise ValueError("If use_lma is specified, lma_q_chunk_size and lma_kv_chunk_size must be provided")
if use_flash and biases is not None:
raise ValueError("use_flash is incompatible with the bias option. For masking, use flash_mask instead")
attn_options = [use_memory_efficient_kernel, use_lma, use_flash]
if sum(attn_options) > 1:
raise ValueError("Choose at most one alternative attention algorithm")
if biases is None:
biases = []
# [*, H, Q/K, C_hidden]
query, key, value = self._prep_qkv(q_x, kv_x)
key = permute_final_dims(key, (1, 0))
# [*, H, Q, K]
output = torch.matmul(query, key)
for b in biases:
output += b
output = softmax_no_cast(output, -1)
# [*, H, Q, C_hidden]
output = torch.matmul(output, value)
output = output.transpose(-2, -3)
output = self._wrap_up(output, q_x)
return output
class EsmFoldTriangleAttention(nn.Module):
def __init__(self, c_in, c_hidden, no_heads, starting=True, inf=1e9):
"""
Args:
c_in:
Input channel dimension
c_hidden:
Overall hidden channel dimension (not per-head)
no_heads:
Number of attention heads
"""
super().__init__()
self.c_in = c_in
self.c_hidden = c_hidden
self.no_heads = no_heads
self.starting = starting
self.inf = inf
self.layer_norm = LayerNorm(self.c_in)
self.linear = EsmFoldLinear(c_in, self.no_heads, bias=False, init="normal")
self.mha = EsmFoldAttention(self.c_in, self.c_in, self.c_in, self.c_hidden, self.no_heads)
@torch.jit.ignore
def _chunk(
self,
x: torch.Tensor,
biases: List[torch.Tensor],
chunk_size: int,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"triangle! triangle!"
mha_inputs = {
"q_x": x,
"kv_x": x,
"biases": biases,
}
return chunk_layer(
partial(self.mha, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma),
mha_inputs,
chunk_size=chunk_size,
no_batch_dims=len(x.shape[:-2]),
_out=x if inplace_safe else None,
)
def forward(
self,
x: torch.Tensor,
mask: Optional[torch.Tensor] = None,
chunk_size: Optional[int] = None,
use_memory_efficient_kernel: bool = False,
use_lma: bool = False,
inplace_safe: bool = False,
) -> torch.Tensor:
"""
Args:
x:
[*, I, J, C_in] input tensor (e.g. the pair representation)
Returns:
[*, I, J, C_in] output tensor
"""
if mask is None:
# [*, I, J]
mask = x.new_ones(
x.shape[:-1],
)
if not self.starting:
x = x.transpose(-2, -3)
mask = mask.transpose(-1, -2)
# [*, I, J, C_in]
x = self.layer_norm(x)
# [*, I, 1, 1, J]
mask_bias = (self.inf * (mask - 1))[..., :, None, None, :]
# [*, H, I, J]
triangle_bias = permute_final_dims(self.linear(x), (2, 0, 1))
# [*, 1, H, I, J]
triangle_bias = triangle_bias.unsqueeze(-4)
biases = [mask_bias, triangle_bias]
if chunk_size is not None:
x = self._chunk(
x,
biases,
chunk_size,
use_memory_efficient_kernel=use_memory_efficient_kernel,
use_lma=use_lma,
inplace_safe=inplace_safe,
)
else:
x = self.mha(
q_x=x, kv_x=x, biases=biases, use_memory_efficient_kernel=use_memory_efficient_kernel, use_lma=use_lma
)
if not self.starting:
x = x.transpose(-2, -3)
return x
class EsmFoldTriangleMultiplicativeUpdate(nn.Module):
"""
Implements Algorithms 11 and 12.
"""
def __init__(self, config, _outgoing=True):
super().__init__()
c_hidden = config.pairwise_state_dim
self._outgoing = _outgoing
self.linear_a_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_a_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_b_p = EsmFoldLinear(c_hidden, c_hidden)
self.linear_b_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_g = EsmFoldLinear(c_hidden, c_hidden, init="gating")
self.linear_z = EsmFoldLinear(c_hidden, c_hidden, init="final")
self.layer_norm_in = LayerNorm(c_hidden)
self.layer_norm_out = LayerNorm(c_hidden)
self.sigmoid = nn.Sigmoid()
def _combine_projections(
self, a: torch.Tensor, b: torch.Tensor, _inplace_chunk_size: Optional[int] = None
) -> torch.Tensor:
if self._outgoing:
a = permute_final_dims(a, (2, 0, 1))
b = permute_final_dims(b, (2, 1, 0))
else:
a = permute_final_dims(a, (2, 1, 0))
b = permute_final_dims(b, (2, 0, 1))
if _inplace_chunk_size is not None:
# To be replaced by torch vmap
for i in range(0, a.shape[-3], _inplace_chunk_size):
a_chunk = a[..., i : i + _inplace_chunk_size, :, :]
b_chunk = b[..., i : i + _inplace_chunk_size, :, :]
a[..., i : i + _inplace_chunk_size, :, :] = torch.matmul(
a_chunk,
b_chunk,
)
p = a
else:
p = torch.matmul(a, b)
return permute_final_dims(p, (1, 2, 0))
def _inference_forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_chunk_size: Optional[int] = None,
with_add: bool = True,
):
"""
Args:
z:
A [*, N, N, C_z] pair representation
mask:
A [*, N, N] pair mask
inplace_chunk_size:
Size of chunks used in the main computation. Increase to trade memory for speed.
with_add:
If True, z is overwritten with (z + update). Otherwise, it is overwritten with (update).
Returns:
A reference to the overwritten z
More memory-efficient, inference-only version of the forward function. Uses in-place operations, fusion of the
addition that happens after this module in the Evoformer, a smidge of recomputation, and a cache of overwritten
values to lower peak memory consumption of this module from 5x the size of the input tensor z to 2.5x its size.
Useful for inference on extremely long sequences.
It works as follows. We will make reference to variables used in the default forward implementation below.
Naively, triangle multiplication attention requires the manifestation of 5 tensors the size of z: 1) z, the
"square" input tensor, 2) a, the first projection of z, 3) b, the second projection of b, 4) g, a z-sized mask,
and 5) a z-sized tensor for intermediate computations. For large N, this is prohibitively expensive; for
N=4000, for example, z is more than 8GB alone. To avoid this problem, we compute b, g, and all intermediate
tensors in small chunks, noting that the chunks required to compute a chunk of the output depend only on the
tensor a and corresponding vertical and horizontal chunks of z. This suggests an algorithm that loops over
pairs of chunks of z: hereafter "columns" and "rows" of z, even though each "column" and "row" in fact contains
inplace_chunk_size contiguous true columns and rows of z. Writing output chunks to a new tensor would bring
total memory consumption down to 3x the size of z. However, more memory can be saved by writing output chunks
directly to z in-place. WLOG, we choose to write output chunks vertically, overwriting the ith "column" of z at
the end of the ith iteration of the main loop. Despite this overwriting, the ith column is always one column
ahead of previously overwritten columns and can be recovered directly from z. After the first iteration,
however, the ith row of z is always at least partially overwritten. For this reason, we introduce the z-cache,
a tensor one-half the size of z. The z-cache initially contains the left half (2nd and 3rd quadrants) of z. For
0 < i < N/2, the missing left part of the ith row of z is recovered from this cache at the beginning of the ith
iteration. Once i exceeds n/2, the cache is "reoriented" to encompass the 3rd and 4th quadrants of z instead.
Though the 3rd quadrant of the original z is entirely overwritten at this point, it can be recovered from the
z-cache itself. Thereafter, the ith row of z can be recovered in its entirety from the reoriented z-cache.
After the final iteration, z has been completely overwritten and contains the triangular multiplicative update.
If with_add is True, it instead contains the sum of z and the triangular multiplicative update. In either case,
peak memory consumption is just 2.5x the size of z, disregarding memory used for chunks and other small
variables.
"""
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
def compute_projection_helper(pair, mask, a=True):
if a:
linear_g = self.linear_a_g
linear_p = self.linear_a_p
else:
linear_g = self.linear_b_g
linear_p = self.linear_b_p
pair = self.layer_norm_in(pair)
p = linear_g(pair)
p.sigmoid_()
p *= linear_p(pair)
p *= mask
p = permute_final_dims(p, (2, 0, 1))
return p
def compute_projection(pair, mask, a=True, chunked=True):
need_transpose = self._outgoing ^ a
if not chunked:
p = compute_projection_helper(pair, mask, a)
if need_transpose:
p = p.transpose(-1, -2)
else:
# This computation is chunked so as not to exceed our 2.5x
# budget with a large intermediate tensor
linear_g = self.linear_a_g if a else self.linear_b_g
c = linear_g.bias.shape[-1]
out_shape = pair.shape[:-3] + (c,) + pair.shape[-3:-1]
p = pair.new_zeros(out_shape)
for i in range(0, pair.shape[-3], inplace_chunk_size):
pair_chunk = pair[..., i : i + inplace_chunk_size, :, :]
pair_chunk = compute_projection_helper(
pair[..., i : i + inplace_chunk_size, :, :],
mask[..., i : i + inplace_chunk_size, :, :],
a,
)
if need_transpose:
pair_chunk = pair_chunk.transpose(-1, -2)
p[..., i : i + inplace_chunk_size] = pair_chunk
else:
p[..., i : i + inplace_chunk_size, :] = pair_chunk
del pair_chunk
return p
# We start by fully manifesting a. In addition to the input, this
# brings total memory consumption to 2x z (disregarding size of chunks)
# [*, N, N, c]
a = compute_projection(z, mask, True, chunked=True)
if inplace_chunk_size is not None:
n = a.shape[-1]
half_n = n // 2 + n % 2
row_dim = -3
col_dim = -2
b_chunk_dim = row_dim if self._outgoing else col_dim
def empty_slicer(t):
return [slice(None) for _ in t.shape]
def slice_tensor(t, start, end, dim):
# Slices start:end from the dim dimension of t
s = empty_slicer(t)
s[dim] = slice(start, end)
return t[s]
def flip_z_cache_(z_cache, z):
# "Reorient" the z_cache (see below), filling it with quadrants
# 3---recovered from the z_cache---and 4---recovered from z---
# of the input tensor z.
quadrant_3 = slice_tensor(z_cache, half_n, None, row_dim)
z_cache = z_cache.transpose(row_dim, col_dim)
# If n is odd, we need to shrink the z_cache by one row
z_cache = z_cache[..., : (n // 2), :, :]
# Move the 3rd quadrant of z into the
first_half_slicer = empty_slicer(z_cache)
first_half_slicer[col_dim] = slice(0, half_n)
z_cache[first_half_slicer] = quadrant_3
# Get the fourth quadrant of z
quadrant_4 = slice_tensor(z, half_n, None, row_dim)
quadrant_4 = slice_tensor(quadrant_4, half_n, None, col_dim)
# Insert said quadrant into the rotated z-cache
quadrant_3_slicer = empty_slicer(z_cache)
quadrant_3_slicer[col_dim] = slice(half_n, None)
z_cache[quadrant_3_slicer] = quadrant_4
return z_cache
# Initialize the z cache to the left half of z.
z_cache_shape = list(z.shape)
z_cache_shape[col_dim] = half_n
z_cache = z.new_zeros(z_cache_shape)
z_cache_slicer = empty_slicer(z_cache)
z_cache_slicer[col_dim] = slice(0, half_n)
z_cache.copy_(z[z_cache_slicer])
z_cache_rotated = False
# We need to reorient the z-cache at the halfway point, and we
# don't want a single chunk to straddle that point. We contract one
# of the chunks in the middle to address that problem.
i_range = list(range(0, half_n, inplace_chunk_size))
initial_offsets = [i_2 - i_1 for i_1, i_2 in zip(i_range, i_range[1:] + [half_n])]
after_half = list(range(half_n, n, inplace_chunk_size))
after_half_offsets = [inplace_chunk_size for _ in after_half]
combined_range_with_offsets = zip(i_range + after_half, initial_offsets + after_half_offsets)
for i, offset in combined_range_with_offsets:
if not z_cache_rotated and i >= half_n:
z_cache = flip_z_cache_(z_cache, z)
z_cache_rotated = True
z_chunk_b = slice_tensor(z, i, i + offset, b_chunk_dim)
mask_chunk = slice_tensor(mask, i, i + offset, b_chunk_dim)
z_chunk_b = z_chunk_b.clone()
if b_chunk_dim == col_dim:
z_chunk_b = slice_tensor(z, i, i + offset, col_dim)
else: # b_chunk_dim == row_dim
# In this case, the b-dimension (b_chunk_dim) is partially
# overwritten at the end of each iteration. We need to
# restore the missing component from the z-cache.
if not z_cache_rotated:
z_chunk_slicer = empty_slicer(z_chunk_b)
z_chunk_slicer[col_dim] = slice(0, half_n)
z_chunk_b[z_chunk_slicer] = slice_tensor(z_cache, i, i + offset, row_dim)
else:
z_cache_offset = i - half_n
z_chunk_b = slice_tensor(z_cache, z_cache_offset, z_cache_offset + offset, row_dim)
b_chunk = compute_projection(z_chunk_b, mask_chunk, a=False, chunked=False)
del z_chunk_b
x_chunk = torch.matmul(a, b_chunk)
x_chunk = permute_final_dims(x_chunk, (1, 2, 0))
x_chunk = self.layer_norm_out(x_chunk)
x_chunk = self.linear_z(x_chunk)
# The g dimension (col_dim) is parallel to and ahead of the
# overwrites in z. We can extract the g chunk normally.
z_chunk_g = slice_tensor(z, i, i + offset, col_dim)
g_chunk = self.linear_g(self.layer_norm_in(z_chunk_g))
g_chunk.sigmoid_()
del z_chunk_g
x_chunk *= g_chunk
# Write the columns into z in-place
z_slicer = empty_slicer(z)
z_slicer[col_dim] = slice(i, i + offset)
if with_add:
z[z_slicer] += x_chunk
else:
z[z_slicer] = x_chunk
else:
b = compute_projection(z, mask, False, False)
x = torch.matmul(a, b)
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.linear_g(z)
g.sigmoid_()
x *= g
if with_add:
z += x
else:
z = x
return z
def forward(
self,
z: torch.Tensor,
mask: Optional[torch.Tensor] = None,
inplace_safe: bool = False,
_add_with_inplace: bool = False,
_inplace_chunk_size: Optional[int] = 256,
) -> torch.Tensor:
"""
Args:
x:
[*, N_res, N_res, C_z] input tensor
mask:
[*, N_res, N_res] input mask
Returns:
[*, N_res, N_res, C_z] output tensor
"""
if inplace_safe:
x = self._inference_forward(
z,
mask,
inplace_chunk_size=_inplace_chunk_size,
with_add=_add_with_inplace,
)
return x
if mask is None:
mask = z.new_ones(z.shape[:-1])
mask = mask.unsqueeze(-1)
z = self.layer_norm_in(z)
a = mask
a = a * self.sigmoid(self.linear_a_g(z))
a = a * self.linear_a_p(z)
b = mask
b = b * self.sigmoid(self.linear_b_g(z))
b = b * self.linear_b_p(z)
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
x = self._combine_projections(a.float(), b.float())
else:
x = self._combine_projections(a, b)
del a, b
x = self.layer_norm_out(x)
x = self.linear_z(x)
g = self.sigmoid(self.linear_g(z))
x = x * g
return x
class EsmFoldPreTrainedModel(EsmPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
# Subclass `EsMPreTrainedModel` to deal with special init
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, EsmFoldLinear):
with torch.no_grad():
if module.init_fn is not None:
module.init_fn(module.weight, module.bias)
elif module.init == "default":
trunc_normal_init_(module.weight, scale=1.0)
elif module.init == "relu":
trunc_normal_init_(module.weight, scale=2.0)
elif module.init == "glorot":
nn.init.xavier_uniform_(module.weight, gain=1)
elif module.init == "gating":
module.weight.fill_(0.0)
if module.bias:
module.bias.fill_(1.0)
elif module.init == "normal":
torch.nn.init.kaiming_normal_(module.weight, nonlinearity="linear")
elif module.init == "final":
module.weight.fill_(0.0)
elif isinstance(module, EsmFoldInvariantPointAttention):
ipa_point_weights_init_(module.head_weights)
elif isinstance(module, EsmFoldTriangularSelfAttentionBlock):
torch.nn.init.zeros_(module.tri_mul_in.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_in.linear_z.bias)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.weight)
torch.nn.init.zeros_(module.tri_mul_out.linear_z.bias)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_start.mha.linear_o.bias)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.weight)
torch.nn.init.zeros_(module.tri_att_end.mha.linear_o.bias)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.weight)
torch.nn.init.zeros_(module.sequence_to_pair.o_proj.bias)
torch.nn.init.zeros_(module.pair_to_sequence.linear.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.weight)
torch.nn.init.zeros_(module.seq_attention.o_proj.bias)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_seq.mlp[-2].bias)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].weight)
torch.nn.init.zeros_(module.mlp_pair.mlp[-2].bias)
else:
super()._init_weights(module)
class EsmFoldSelfAttention(nn.Module):
def __init__(self, embed_dim, num_heads, head_width, gated=False):
super().__init__()
assert embed_dim == num_heads * head_width
self.embed_dim = embed_dim
self.num_heads = num_heads
self.head_width = head_width
self.proj = nn.Linear(embed_dim, embed_dim * 3, bias=False)
self.o_proj = nn.Linear(embed_dim, embed_dim, bias=True)
self.gated = gated
if gated:
self.g_proj = nn.Linear(embed_dim, embed_dim)
torch.nn.init.zeros_(self.g_proj.weight)
torch.nn.init.ones_(self.g_proj.bias)
self.rescale_factor = self.head_width**-0.5
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, x, mask=None, bias=None, indices=None):
"""
Basic self attention with optional mask and external pairwise bias. To handle sequences of different lengths,
use mask.
Inputs:
x: batch of input sequneces (.. x L x C) mask: batch of boolean masks where 1=valid, 0=padding position (..
x L_k) bias: batch of scalar pairwise attention biases (.. x Lq x Lk x num_heads)
Outputs:
sequence projection (B x L x embed_dim), attention maps (B x L x L x num_heads)
"""
t = self.proj(x).view(*x.shape[:2], self.num_heads, -1)
t = t.permute(0, 2, 1, 3)
q, k, v = t.chunk(3, dim=-1)
q = self.rescale_factor * q
a = torch.einsum("...qc,...kc->...qk", q, k)
# Add external attention bias.
if bias is not None:
a = a + bias.permute(0, 3, 1, 2)
# Do not attend to padding tokens.
if mask is not None:
mask = mask[:, None, None]
a = a.masked_fill(mask == False, -np.inf) # noqa: E712
a = nn.functional.softmax(a, dim=-1)
y = torch.einsum("...hqk,...hkc->...qhc", a, v)
y = y.reshape(*y.shape[:2], -1)
if self.gated:
y = self.g_proj(x).sigmoid() * y
y = self.o_proj(y)
return y, a.permute(0, 3, 1, 2)
class EsmFoldDropout(nn.Module):
"""
Implementation of dropout with the ability to share the dropout mask along a particular dimension.
"""
def __init__(self, r: float, batch_dim: Union[int, List[int]]):
super().__init__()
self.r = r
if isinstance(batch_dim, int):
batch_dim = [batch_dim]
self.batch_dim = batch_dim
self.dropout = nn.Dropout(self.r)
def forward(self, x: torch.Tensor) -> torch.Tensor:
shape = list(x.shape)
if self.batch_dim is not None:
for bd in self.batch_dim:
shape[bd] = 1
return x * self.dropout(x.new_ones(shape))
class EsmFoldSequenceToPair(nn.Module):
def __init__(self, sequence_state_dim, inner_dim, pairwise_state_dim):
super().__init__()
self.layernorm = nn.LayerNorm(sequence_state_dim)
self.proj = nn.Linear(sequence_state_dim, inner_dim * 2, bias=True)
self.o_proj = nn.Linear(2 * inner_dim, pairwise_state_dim, bias=True)
torch.nn.init.zeros_(self.proj.bias)
torch.nn.init.zeros_(self.o_proj.bias)
def forward(self, sequence_state):
"""
Inputs:
sequence_state: B x L x sequence_state_dim
Output:
pairwise_state: B x L x L x pairwise_state_dim
Intermediate state:
B x L x L x 2*inner_dim
"""
assert len(sequence_state.shape) == 3
s = self.layernorm(sequence_state)
s = self.proj(s)
q, k = s.chunk(2, dim=-1)
prod = q[:, None, :, :] * k[:, :, None, :]
diff = q[:, None, :, :] - k[:, :, None, :]
x = torch.cat([prod, diff], dim=-1)
x = self.o_proj(x)
return x
class EsmFoldPairToSequence(nn.Module):
def __init__(self, pairwise_state_dim, num_heads):
super().__init__()
self.layernorm = nn.LayerNorm(pairwise_state_dim)
self.linear = nn.Linear(pairwise_state_dim, num_heads, bias=False)
def forward(self, pairwise_state):
"""
Inputs:
pairwise_state: B x L x L x pairwise_state_dim
Output:
pairwise_bias: B x L x L x num_heads
"""
assert len(pairwise_state.shape) == 4
z = self.layernorm(pairwise_state)
pairwise_bias = self.linear(z)
return pairwise_bias
class EsmFoldResidueMLP(nn.Module):
def __init__(self, embed_dim, inner_dim, dropout=0):
super().__init__()
self.mlp = nn.Sequential(
nn.LayerNorm(embed_dim),
nn.Linear(embed_dim, inner_dim),
nn.ReLU(),
nn.Linear(inner_dim, embed_dim),
nn.Dropout(dropout),
)
def forward(self, x):
return x + self.mlp(x)
class EsmFoldTriangularSelfAttentionBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
sequence_state_dim = config.sequence_state_dim
pairwise_state_dim = config.pairwise_state_dim
sequence_num_heads = sequence_state_dim // config.sequence_head_width
pairwise_num_heads = pairwise_state_dim // config.pairwise_head_width
self.layernorm_1 = nn.LayerNorm(sequence_state_dim)
self.sequence_to_pair = EsmFoldSequenceToPair(sequence_state_dim, pairwise_state_dim // 2, pairwise_state_dim)
self.pair_to_sequence = EsmFoldPairToSequence(pairwise_state_dim, sequence_num_heads)
self.seq_attention = EsmFoldSelfAttention(
sequence_state_dim, sequence_num_heads, config.sequence_head_width, gated=True
)
self.tri_mul_out = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=True)
self.tri_mul_in = EsmFoldTriangleMultiplicativeUpdate(config, _outgoing=False)
self.tri_att_start = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=True
)
self.tri_att_end = EsmFoldTriangleAttention(
pairwise_state_dim, config.pairwise_head_width, pairwise_num_heads, inf=1e9, starting=False
)
self.mlp_seq = EsmFoldResidueMLP(sequence_state_dim, 4 * sequence_state_dim, dropout=config.dropout)
self.mlp_pair = EsmFoldResidueMLP(pairwise_state_dim, 4 * pairwise_state_dim, dropout=config.dropout)
self.drop = nn.Dropout(config.dropout)
self.row_drop = EsmFoldDropout(config.dropout * 2, 2)
self.col_drop = EsmFoldDropout(config.dropout * 2, 1)
def forward(self, sequence_state, pairwise_state, mask=None, chunk_size=None, **__kwargs):
"""
Inputs:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim mask: B x L boolean
tensor of valid positions
Output:
sequence_state: B x L x sequence_state_dim pairwise_state: B x L x L x pairwise_state_dim
"""
if len(sequence_state.shape) != 3:
raise ValueError(f"`sequence_state` should be a 3d-tensor, got {len(sequence_state.shape)} dims.")
if len(pairwise_state.shape) != 4:
raise ValueError(f"`pairwise_state` should be a 4d-tensor, got {len(pairwise_state.shape)} dims.")
if mask is not None and len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim, sequence_state_dim = sequence_state.shape
pairwise_state_dim = pairwise_state.shape[3]
if sequence_state_dim != self.config.sequence_state_dim:
raise ValueError(
"`sequence_state` last dimension should be equal to `self.sequence_state_dim`. Got "
f"{sequence_state_dim} != {self.config.sequence_state_dim}."
)
if pairwise_state_dim != self.config.pairwise_state_dim:
raise ValueError(
"`pairwise_state` last dimension should be equal to `self.pairwise_state_dim`. Got "
f"{pairwise_state_dim} != {self.config.pairwise_state_dim}."
)
if batch_dim != pairwise_state.shape[0]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent batch size: {batch_dim} != "
f"{pairwise_state.shape[0]}."
)
if seq_dim != pairwise_state.shape[1] or seq_dim != pairwise_state.shape[2]:
raise ValueError(
f"`sequence_state` and `pairwise_state` have inconsistent sequence length: {seq_dim} != "
f"{pairwise_state.shape[1]} or {pairwise_state.shape[2]}."
)
# Update sequence state
bias = self.pair_to_sequence(pairwise_state)
# Self attention with bias + mlp.
y = self.layernorm_1(sequence_state)
y, _ = self.seq_attention(y, mask=mask, bias=bias)
sequence_state = sequence_state + self.drop(y)
sequence_state = self.mlp_seq(sequence_state)
# Update pairwise state
pairwise_state = pairwise_state + self.sequence_to_pair(sequence_state)
# Axial attention with triangular bias.
tri_mask = mask.unsqueeze(2) * mask.unsqueeze(1) if mask is not None else None
pairwise_state = pairwise_state + self.row_drop(self.tri_mul_out(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.col_drop(self.tri_mul_in(pairwise_state, mask=tri_mask))
pairwise_state = pairwise_state + self.row_drop(
self.tri_att_start(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
pairwise_state = pairwise_state + self.col_drop(
self.tri_att_end(pairwise_state, mask=tri_mask, chunk_size=chunk_size)
)
# MLP over pairs.
pairwise_state = self.mlp_pair(pairwise_state)
return sequence_state, pairwise_state
class EsmCategoricalMixture:
def __init__(self, param, bins=50, start=0, end=1):
# All tensors are of shape ..., bins.
self.logits = param
bins = torch.linspace(start, end, bins + 1, device=self.logits.device, dtype=self.logits.dtype)
self.v_bins = (bins[:-1] + bins[1:]) / 2
def log_prob(self, true):
# Shapes are:
# self.probs: ... x bins
# true : ...
true_index = (true.unsqueeze(-1) - self.v_bins[[None] * true.ndim]).abs().argmin(-1)
nll = self.logits.log_softmax(-1)
return torch.take_along_dim(nll, true_index.unsqueeze(-1), dim=-1).squeeze(-1)
def mean(self):
return (self.logits.softmax(-1) @ self.v_bins.unsqueeze(1)).squeeze(-1)
def categorical_lddt(logits, bins=50):
# Logits are ..., 37, bins.
return EsmCategoricalMixture(logits, bins=bins).mean()
def get_axial_mask(mask):
"""
Helper to convert B x L mask of valid positions to axial mask used in row column attentions.
Input:
mask: B x L tensor of booleans
Output:
mask: B x L x L tensor of booleans
"""
if mask is None:
return None
if len(mask.shape) != 2:
raise ValueError(f"`mask` should be a 2d-tensor, got {len(mask.shape)} dims.")
batch_dim, seq_dim = mask.shape
m = mask.unsqueeze(1).expand(batch_dim, seq_dim, seq_dim)
m = m.reshape(batch_dim * seq_dim, seq_dim)
return m
class EsmFoldRelativePosition(nn.Module):
def __init__(self, config):
super().__init__()
self.bins = config.position_bins
# Note an additional offset is used so that the 0th position
# is reserved for masked pairs.
self.embedding = torch.nn.Embedding(2 * self.bins + 2, config.pairwise_state_dim)
def forward(self, residue_index, mask=None):
"""
Input:
residue_index: B x L tensor of indices (dytpe=torch.long) mask: B x L tensor of booleans
Output:
pairwise_state: B x L x L x pairwise_state_dim tensor of embeddings
"""
if residue_index.dtype != torch.long:
raise ValueError(f"`residue_index` has dtype {residue_index.dtype}, it should be `torch.long`.")
if mask is not None and residue_index.shape != mask.shape:
raise ValueError(
f"`residue_index` and `mask` have inconsistent shapes: {residue_index.shape} != {mask.shape}."
)
diff = residue_index[:, None, :] - residue_index[:, :, None]
diff = diff.clamp(-self.bins, self.bins)
diff = diff + self.bins + 1 # Add 1 to adjust for padding index.
if mask is not None:
mask = mask[:, None, :] * mask[:, :, None]
diff[mask == False] = 0 # noqa: E712
output = self.embedding(diff)
return output
class EsmFoldAngleResnetBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.resnet_dim, config.resnet_dim, init="final")
self.relu = nn.ReLU()
def forward(self, a: torch.Tensor) -> torch.Tensor:
s_initial = a
a = self.relu(a)
a = self.linear_1(a)
a = self.relu(a)
a = self.linear_2(a)
return a + s_initial
class EsmFoldAngleResnet(nn.Module):
"""
Implements Algorithm 20, lines 11-14
"""
def __init__(self, config):
super().__init__()
self.config = config
self.linear_in = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.linear_initial = EsmFoldLinear(config.sequence_dim, config.resnet_dim)
self.layers = nn.ModuleList()
for _ in range(config.num_resnet_blocks):
layer = EsmFoldAngleResnetBlock(config)
self.layers.append(layer)
self.linear_out = EsmFoldLinear(config.resnet_dim, config.num_angles * 2)
self.relu = nn.ReLU()
def forward(self, s: torch.Tensor, s_initial: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
s:
[*, C_hidden] single embedding
s_initial:
[*, C_hidden] single embedding as of the start of the StructureModule
Returns:
[*, no_angles, 2] predicted angles
"""
# NOTE: The ReLU's applied to the inputs are absent from the supplement
# pseudocode but present in the source. For maximal compatibility with
# the pretrained weights, I'm going with the source.
# [*, C_hidden]
s_initial = self.relu(s_initial)
s_initial = self.linear_initial(s_initial)
s = self.relu(s)
s = self.linear_in(s)
s = s + s_initial
for l in self.layers:
s = l(s)
s = self.relu(s)
# [*, no_angles * 2]
s = self.linear_out(s)
# [*, no_angles, 2]
s = s.view(s.shape[:-1] + (-1, 2))
unnormalized_s = s
norm_denom = torch.sqrt(
torch.clamp(
torch.sum(s**2, dim=-1, keepdim=True),
min=self.config.epsilon,
)
)
s = s / norm_denom
return unnormalized_s, s
class EsmFoldInvariantPointAttention(nn.Module):
"""
Implements Algorithm 22.
"""
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_dim
c_z = config.pairwise_dim
self.hidden_dim = config.ipa_dim
self.num_heads = config.num_heads_ipa
self.num_qk_points = config.num_qk_points
self.num_v_points = config.num_v_points
# These linear layers differ from their specifications in the
# supplement. There, they lack bias and use Glorot initialization.
# Here as in the official source, they have bias and use the default
# Lecun initialization.
hc = config.ipa_dim * config.num_heads_ipa
self.linear_q = EsmFoldLinear(c_s, hc)
self.linear_kv = EsmFoldLinear(c_s, 2 * hc)
hpq = config.num_heads_ipa * config.num_qk_points * 3
self.linear_q_points = EsmFoldLinear(c_s, hpq)
hpkv = config.num_heads_ipa * (config.num_qk_points + config.num_v_points) * 3
self.linear_kv_points = EsmFoldLinear(c_s, hpkv)
self.linear_b = EsmFoldLinear(c_z, config.num_heads_ipa)
self.head_weights = nn.Parameter(torch.zeros((config.num_heads_ipa)))
concat_out_dim = config.num_heads_ipa * (c_z + config.ipa_dim + config.num_v_points * 4)
self.linear_out = EsmFoldLinear(concat_out_dim, c_s, init="final")
self.softmax = nn.Softmax(dim=-1)
self.softplus = nn.Softplus()
def forward(
self,
s: torch.Tensor,
z: Optional[torch.Tensor],
r: Rigid,
mask: torch.Tensor,
_offload_inference: bool = False,
_z_reference_list: Optional[Sequence[torch.Tensor]] = None,
) -> torch.Tensor:
"""
Args:
s:
[*, N_res, C_s] single representation
z:
[*, N_res, N_res, C_z] pair representation
r:
[*, N_res] transformation object
mask:
[*, N_res] mask
Returns:
[*, N_res, C_s] single representation update
"""
z = [z]
#######################################
# Generate scalar and point activations
#######################################
# [*, N_res, H * C_hidden]
q = self.linear_q(s)
kv = self.linear_kv(s)
# [*, N_res, H, C_hidden]
q = q.view(q.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, 2 * C_hidden]
kv = kv.view(kv.shape[:-1] + (self.num_heads, -1))
# [*, N_res, H, C_hidden]
k, v = torch.split(kv, self.hidden_dim, dim=-1)
# [*, N_res, H * P_q * 3]
q_pts = self.linear_q_points(s)
# This is kind of clunky, but it's how the original does it
# [*, N_res, H * P_q, 3]
q_pts = torch.split(q_pts, q_pts.shape[-1] // 3, dim=-1)
q_pts = torch.stack(q_pts, dim=-1)
q_pts = r[..., None].apply(q_pts)
# [*, N_res, H, P_q, 3]
q_pts = q_pts.view(q_pts.shape[:-2] + (self.num_heads, self.num_qk_points, 3))
# [*, N_res, H * (P_q + P_v) * 3]
kv_pts = self.linear_kv_points(s)
# [*, N_res, H * (P_q + P_v), 3]
kv_pts = torch.split(kv_pts, kv_pts.shape[-1] // 3, dim=-1)
kv_pts = torch.stack(kv_pts, dim=-1)
kv_pts = r[..., None].apply(kv_pts)
# [*, N_res, H, (P_q + P_v), 3]
kv_pts = kv_pts.view(kv_pts.shape[:-2] + (self.num_heads, -1, 3))
# [*, N_res, H, P_q/P_v, 3]
k_pts, v_pts = torch.split(kv_pts, [self.num_qk_points, self.num_v_points], dim=-2)
##########################
# Compute attention scores
##########################
# [*, N_res, N_res, H]
b = self.linear_b(z[0])
if _offload_inference:
assert sys.getrefcount(z[0]) == 2
z[0] = z[0].cpu()
# [*, H, N_res, N_res]
if is_fp16_enabled():
with torch.cuda.amp.autocast(enabled=False):
a = torch.matmul(
permute_final_dims(q.float(), (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k.float(), (1, 2, 0)), # [*, H, C_hidden, N_res]
)
else:
a = torch.matmul(
permute_final_dims(q, (1, 0, 2)), # [*, H, N_res, C_hidden]
permute_final_dims(k, (1, 2, 0)), # [*, H, C_hidden, N_res]
)
a *= math.sqrt(1.0 / (3 * self.hidden_dim))
a += math.sqrt(1.0 / 3) * permute_final_dims(b, (2, 0, 1))
# [*, N_res, N_res, H, P_q, 3]
pt_att = q_pts.unsqueeze(-4) - k_pts.unsqueeze(-5)
pt_att = pt_att**2
# [*, N_res, N_res, H, P_q]
pt_att = sum(torch.unbind(pt_att, dim=-1))
head_weights = self.softplus(self.head_weights).view(*((1,) * len(pt_att.shape[:-2]) + (-1, 1)))
head_weights = head_weights * math.sqrt(1.0 / (3 * (self.num_qk_points * 9.0 / 2)))
pt_att = pt_att * head_weights
# [*, N_res, N_res, H]
pt_att = torch.sum(pt_att, dim=-1) * (-0.5)
# [*, N_res, N_res]
square_mask = mask.unsqueeze(-1) * mask.unsqueeze(-2)
square_mask = self.config.inf * (square_mask - 1)
# [*, H, N_res, N_res]
pt_att = permute_final_dims(pt_att, (2, 0, 1))
a = a + pt_att
a = a + square_mask.unsqueeze(-3)
a = self.softmax(a)
################
# Compute output
################
# [*, N_res, H, C_hidden]
o = torch.matmul(a, v.transpose(-2, -3).to(dtype=a.dtype)).transpose(-2, -3)
# [*, N_res, H * C_hidden]
o = flatten_final_dims(o, 2)
# [*, H, 3, N_res, P_v]
o_pt = torch.sum(
(a[..., None, :, :, None] * permute_final_dims(v_pts, (1, 3, 0, 2))[..., None, :, :]),
dim=-2,
)
# [*, N_res, H, P_v, 3]
o_pt = permute_final_dims(o_pt, (2, 0, 3, 1))
o_pt = r[..., None, None].invert_apply(o_pt)
# [*, N_res, H * P_v]
o_pt_norm = flatten_final_dims(torch.sqrt(torch.sum(o_pt**2, dim=-1) + self.config.epsilon), 2)
# [*, N_res, H * P_v, 3]
o_pt = o_pt.reshape(*o_pt.shape[:-3], -1, 3)
if _offload_inference:
z[0] = z[0].to(o_pt.device)
# [*, N_res, H, C_z]
o_pair = torch.matmul(a.transpose(-2, -3), z[0].to(dtype=a.dtype))
# [*, N_res, H * C_z]
o_pair = flatten_final_dims(o_pair, 2)
# [*, N_res, C_s]
s = self.linear_out(
torch.cat((o, *torch.unbind(o_pt, dim=-1), o_pt_norm, o_pair), dim=-1).to(dtype=z[0].dtype)
)
return s
class EsmFoldBackboneUpdate(nn.Module):
"""
Implements part of Algorithm 23.
"""
def __init__(self, config):
super().__init__()
self.linear = EsmFoldLinear(config.sequence_dim, 6, init="final")
def forward(self, s: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Args:
[*, N_res, C_s] single representation
Returns:
[*, N_res, 6] update vector
"""
# [*, 6]
update = self.linear(s)
return update
class EsmFoldStructureModuleTransitionLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.linear_1 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_2 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="relu")
self.linear_3 = EsmFoldLinear(config.sequence_dim, config.sequence_dim, init="final")
self.relu = nn.ReLU()
def forward(self, s):
s_initial = s
s = self.linear_1(s)
s = self.relu(s)
s = self.linear_2(s)
s = self.relu(s)
s = self.linear_3(s)
s = s + s_initial
return s
class EsmFoldStructureModuleTransition(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layers = nn.ModuleList()
for _ in range(config.num_transition_layers):
l = EsmFoldStructureModuleTransitionLayer(config)
self.layers.append(l)
self.dropout = nn.Dropout(config.dropout_rate)
self.layer_norm = LayerNorm(config.sequence_dim)
def forward(self, s):
for l in self.layers:
s = l(s)
s = self.dropout(s)
s = self.layer_norm(s)
return s
class EsmFoldStructureModule(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
# Buffers to be lazily initialized later
# self.default_frames
# self.group_idx
# self.atom_mask
# self.lit_positions
self.layer_norm_s = LayerNorm(config.sequence_dim)
self.layer_norm_z = LayerNorm(config.pairwise_dim)
self.linear_in = EsmFoldLinear(config.sequence_dim, config.sequence_dim)
self.ipa = EsmFoldInvariantPointAttention(config)
self.ipa_dropout = nn.Dropout(config.dropout_rate)
self.layer_norm_ipa = LayerNorm(config.sequence_dim)
self.transition = EsmFoldStructureModuleTransition(config)
self.bb_update = EsmFoldBackboneUpdate(config)
self.angle_resnet = EsmFoldAngleResnet(config)
def forward(
self,
evoformer_output_dict,
aatype,
mask=None,
_offload_inference=False,
):
"""
Args:
evoformer_output_dict:
Dictionary containing:
"single":
[*, N_res, C_s] single representation
"pair":
[*, N_res, N_res, C_z] pair representation
aatype:
[*, N_res] amino acid indices
mask:
Optional [*, N_res] sequence mask
Returns:
A dictionary of outputs
"""
s = evoformer_output_dict["single"]
if mask is None:
# [*, N]
mask = s.new_ones(s.shape[:-1])
# [*, N, C_s]
s = self.layer_norm_s(s)
# [*, N, N, C_z]
z = self.layer_norm_z(evoformer_output_dict["pair"])
z_reference_list = None
if _offload_inference:
assert sys.getrefcount(evoformer_output_dict["pair"]) == 2
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].cpu()
z_reference_list = [z]
z = None
# [*, N, C_s]
s_initial = s
s = self.linear_in(s)
# [*, N]
rigids = Rigid.identity(
s.shape[:-1],
s.dtype,
s.device,
self.training,
fmt="quat",
)
outputs = []
for i in range(self.config.num_blocks):
# [*, N, C_s]
s = s + self.ipa(
s,
z,
rigids,
mask,
_offload_inference=_offload_inference,
_z_reference_list=z_reference_list,
)
s = self.ipa_dropout(s)
s = self.layer_norm_ipa(s)
s = self.transition(s)
# [*, N]
rigids = rigids.compose_q_update_vec(self.bb_update(s))
# To hew as closely as possible to AlphaFold, we convert our
# quaternion-based transformations to rotation-matrix ones
# here
backb_to_global = Rigid(
Rotation(rot_mats=rigids.get_rots().get_rot_mats(), quats=None),
rigids.get_trans(),
)
backb_to_global = backb_to_global.scale_translation(self.config.trans_scale_factor)
# [*, N, 7, 2]
unnormalized_angles, angles = self.angle_resnet(s, s_initial)
all_frames_to_global = self.torsion_angles_to_frames(backb_to_global, angles, aatype)
pred_xyz = self.frames_and_literature_positions_to_atom14_pos(all_frames_to_global, aatype)
scaled_rigids = rigids.scale_translation(self.config.trans_scale_factor)
preds = {
"frames": scaled_rigids.to_tensor_7(),
"sidechain_frames": all_frames_to_global.to_tensor_4x4(),
"unnormalized_angles": unnormalized_angles,
"angles": angles,
"positions": pred_xyz,
"states": s,
}
outputs.append(preds)
rigids = rigids.stop_rot_gradient()
del z, z_reference_list
if _offload_inference:
evoformer_output_dict["pair"] = evoformer_output_dict["pair"].to(s.device)
outputs = dict_multimap(torch.stack, outputs)
outputs["single"] = s
return outputs
def _init_residue_constants(self, float_dtype, device):
if not hasattr(self, "default_frames"):
self.register_buffer(
"default_frames",
torch.tensor(
residue_constants.restype_rigid_group_default_frame,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "group_idx"):
self.register_buffer(
"group_idx",
torch.tensor(
residue_constants.restype_atom14_to_rigid_group,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "atom_mask"):
self.register_buffer(
"atom_mask",
torch.tensor(
residue_constants.restype_atom14_mask,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
if not hasattr(self, "lit_positions"):
self.register_buffer(
"lit_positions",
torch.tensor(
residue_constants.restype_atom14_rigid_group_positions,
dtype=float_dtype,
device=device,
requires_grad=False,
),
persistent=False,
)
def torsion_angles_to_frames(self, r, alpha, f):
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(alpha.dtype, alpha.device)
# Separated purely to make testing less annoying
return torsion_angles_to_frames(r, alpha, f, self.default_frames)
def frames_and_literature_positions_to_atom14_pos(self, r, f): # [*, N, 8] # [*, N]
# Lazily initialize the residue constants on the correct device
self._init_residue_constants(r.get_rots().dtype, r.get_rots().device)
return frames_and_literature_positions_to_atom14_pos(
r,
f,
self.default_frames,
self.group_idx,
self.atom_mask,
self.lit_positions,
)
class EsmFoldingTrunk(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
c_s = config.sequence_state_dim
c_z = config.pairwise_state_dim
self.pairwise_positional_embedding = EsmFoldRelativePosition(config)
self.blocks = nn.ModuleList([EsmFoldTriangularSelfAttentionBlock(config) for _ in range(config.num_blocks)])
self.recycle_bins = 15
self.recycle_s_norm = nn.LayerNorm(c_s)
self.recycle_z_norm = nn.LayerNorm(c_z)
self.recycle_disto = nn.Embedding(self.recycle_bins, c_z)
self.recycle_disto.weight[0].detach().zero_()
self.structure_module = EsmFoldStructureModule(config.structure_module)
self.trunk2sm_s = nn.Linear(c_s, config.structure_module.sequence_dim)
self.trunk2sm_z = nn.Linear(c_z, config.structure_module.pairwise_dim)
self.chunk_size = config.chunk_size
def set_chunk_size(self, chunk_size):
# This parameter means the axial attention will be computed
# in a chunked manner. This should make the memory used more or less O(L) instead of O(L^2).
# It's equivalent to running a for loop over chunks of the dimension we're iterative over,
# where the chunk_size is the size of the chunks, so 128 would mean to parse 128-length chunks.
self.chunk_size = chunk_size
def forward(self, seq_feats, pair_feats, true_aa, residx, mask, no_recycles):
"""
Inputs:
seq_feats: B x L x C tensor of sequence features pair_feats: B x L x L x C tensor of pair features residx: B
x L long tensor giving the position in the sequence mask: B x L boolean tensor indicating valid residues
Output:
predicted_structure: B x L x (num_atoms_per_residue * 3) tensor wrapped in a Coordinates object
"""
device = seq_feats.device
s_s_0 = seq_feats
s_z_0 = pair_feats
if no_recycles is None:
no_recycles = self.config.max_recycles
else:
if no_recycles < 0:
raise ValueError("Number of recycles must not be negative.")
no_recycles += 1 # First 'recycle' is just the standard forward pass through the model.
def trunk_iter(s, z, residx, mask):
z = z + self.pairwise_positional_embedding(residx, mask=mask)
for block in self.blocks:
s, z = block(s, z, mask=mask, residue_index=residx, chunk_size=self.chunk_size)
return s, z
s_s = s_s_0
s_z = s_z_0
recycle_s = torch.zeros_like(s_s)
recycle_z = torch.zeros_like(s_z)
recycle_bins = torch.zeros(*s_z.shape[:-1], device=device, dtype=torch.int64)
for recycle_idx in range(no_recycles):
with ContextManagers([] if recycle_idx == no_recycles - 1 else [torch.no_grad()]):
# === Recycling ===
recycle_s = self.recycle_s_norm(recycle_s.detach()).to(device)
recycle_z = self.recycle_z_norm(recycle_z.detach()).to(device)
recycle_z += self.recycle_disto(recycle_bins.detach()).to(device)
s_s, s_z = trunk_iter(s_s_0 + recycle_s, s_z_0 + recycle_z, residx, mask)
# === Structure module ===
structure = self.structure_module(
{"single": self.trunk2sm_s(s_s), "pair": self.trunk2sm_z(s_z)},
true_aa,
mask.float(),
)
recycle_s = s_s
recycle_z = s_z
# Distogram needs the N, CA, C coordinates, and bin constants same as alphafold.
recycle_bins = EsmFoldingTrunk.distogram(
structure["positions"][-1][:, :, :3],
3.375,
21.375,
self.recycle_bins,
)
structure["s_s"] = s_s
structure["s_z"] = s_z
return structure
@staticmethod
def distogram(coords, min_bin, max_bin, num_bins):
# Coords are [... L x 3 x 3], where it's [N, CA, C] x 3 coordinates.
boundaries = torch.linspace(
min_bin,
max_bin,
num_bins - 1,
device=coords.device,
)
boundaries = boundaries**2
N, CA, C = [x.squeeze(-2) for x in coords.chunk(3, dim=-2)]
# Infer CB coordinates.
b = CA - N
c = C - CA
a = b.cross(c, dim=-1)
CB = -0.58273431 * a + 0.56802827 * b - 0.54067466 * c + CA
dists = (CB[..., None, :, :] - CB[..., :, None, :]).pow(2).sum(dim=-1, keepdims=True)
bins = torch.sum(dists > boundaries, dim=-1) # [..., L, L]
return bins
# TODO Add information to the docstring about any methods that convert to PDB format, or otherwise prepare
# the outputs for downstream use.
@add_start_docstrings(
"""
ESMForProteinFolding is the HuggingFace port of the original ESMFold model. It consists of an ESM-2 "stem" followed
by a protein folding "head", although unlike most other output heads, this "head" is similar in size and runtime to
the rest of the model combined! It outputs a dictionary containing predicted structural information about the input
protein(s).
""",
ESM_START_DOCSTRING,
)
class EsmForProteinFolding(EsmPreTrainedModel):
_no_split_modules = ["EsmFoldStructureModule", "EsmFoldTriangularSelfAttentionBlock"]
def __init__(self, config):
super().__init__(config)
self.config = config
self.distogram_bins = 64
self.esm = EsmModel(config, add_pooling_layer=False)
self.esm.requires_grad_(False)
if self.config.esmfold_config.fp16_esm:
self.esm.half()
self.esm_feats = self.config.hidden_size
self.esm_attns = self.config.num_hidden_layers * self.config.num_attention_heads
self.esm_layers = self.config.num_hidden_layers
self.register_buffer("af2_to_esm", self._af2_to_esm_from_vocab_list(config.vocab_list))
self.esm_s_combine = nn.Parameter(torch.zeros(self.esm_layers + 1))
trunk_config = self.config.esmfold_config.trunk
c_s = trunk_config.sequence_state_dim
c_z = trunk_config.pairwise_state_dim
self.esm_s_mlp = nn.Sequential(
LayerNorm(self.esm_feats),
nn.Linear(self.esm_feats, c_s),
nn.ReLU(),
nn.Linear(c_s, c_s),
)
# 0 is padding, N is unknown residues, N + 1 is mask.
self.n_tokens_embed = residue_constants.restype_num + 3
self.pad_idx = 0
self.unk_idx = self.n_tokens_embed - 2
self.mask_idx = self.n_tokens_embed - 1
self.esm_dict_cls_idx = self.config.vocab_list.index("<cls>")
self.esm_dict_mask_idx = self.config.vocab_list.index("<mask>")
self.esm_dict_eos_idx = self.config.vocab_list.index("<eos>")
self.esm_dict_padding_idx = self.config.vocab_list.index("<pad>")
if self.config.esmfold_config.embed_aa:
self.embedding = nn.Embedding(self.n_tokens_embed, c_s, padding_idx=0)
self.trunk = EsmFoldingTrunk(trunk_config)
self.distogram_head = nn.Linear(c_z, self.distogram_bins)
self.ptm_head = nn.Linear(c_z, self.distogram_bins)
self.lm_head = nn.Linear(c_s, self.n_tokens_embed)
self.lddt_bins = 50
structure_module_config = trunk_config.structure_module
self.lddt_head = nn.Sequential(
nn.LayerNorm(structure_module_config.sequence_dim),
nn.Linear(structure_module_config.sequence_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, self.config.esmfold_config.lddt_head_hid_dim),
nn.Linear(self.config.esmfold_config.lddt_head_hid_dim, 37 * self.lddt_bins),
)
@staticmethod
def _af2_to_esm_from_vocab_list(vocab_list: List[str]) -> torch.Tensor:
# Remember that t is shifted from residue_constants by 1 (0 is padding).
esm_reorder = [vocab_list.index("<pad>")] + [vocab_list.index(v) for v in residue_constants.restypes_with_x]
return torch.tensor(esm_reorder)
@add_start_docstrings_to_model_forward(ESMFOLD_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=EsmForProteinFoldingOutput, config_class=EsmConfig)
def forward(
self,
input_ids: torch.Tensor,
attention_mask: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
masking_pattern: Optional[torch.Tensor] = None,
num_recycles: Optional[int] = None,
) -> EsmForProteinFoldingOutput:
r"""
Returns:
Example:
```python
>>> from transformers import AutoTokenizer, EsmForProteinFolding
>>> model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1")
>>> tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
>>> inputs = tokenizer(["MLKNVQVQLV"], return_tensors="pt", add_special_tokens=False) # A tiny random peptide
>>> outputs = model(**inputs)
>>> folded_positions = outputs.positions
```
"""
cfg = self.config.esmfold_config
aa = input_ids # B x L
B = aa.shape[0]
L = aa.shape[1]
device = input_ids.device
if attention_mask is None:
attention_mask = torch.ones_like(aa, device=device)
if position_ids is None:
position_ids = torch.arange(L, device=device).expand_as(input_ids)
# === ESM ===
esmaa = self.af2_idx_to_esm_idx(aa, attention_mask)
if masking_pattern is not None:
masked_aa, esmaa, mlm_targets = self.bert_mask(aa, esmaa, attention_mask, masking_pattern)
else:
masked_aa = aa
mlm_targets = None
# We get sequence and pair representations from whatever version of ESM /
# configuration we are using. The sequence representation esm_s is always
# present. The pair embedding esm_z may be present depending on the
# configuration of the model. If esm_z is not used by the model then it
# is returned as None here.
esm_s = self.compute_language_model_representations(esmaa)
# Convert esm_s and esm_z, if present, to the precision used by the trunk and
# the structure module. These tensors may be a lower precision if, for example,
# we're running the language model in fp16 precision.
esm_s = esm_s.to(self.esm_s_combine.dtype)
if cfg.esm_ablate_sequence:
esm_s = esm_s * 0
esm_s = esm_s.detach()
# === preprocessing ===
esm_s = (self.esm_s_combine.softmax(0).unsqueeze(0) @ esm_s).squeeze(2)
s_s_0 = self.esm_s_mlp(esm_s)
s_z_0 = s_s_0.new_zeros(B, L, L, cfg.trunk.pairwise_state_dim)
if self.config.esmfold_config.embed_aa:
s_s_0 += self.embedding(masked_aa)
structure: dict = self.trunk(s_s_0, s_z_0, aa, position_ids, attention_mask, no_recycles=num_recycles)
# Documenting what we expect:
structure = {
k: v
for k, v in structure.items()
if k
in [
"s_z",
"s_s",
"frames",
"sidechain_frames",
"unnormalized_angles",
"angles",
"positions",
"states",
]
}
# Add BERT mask for the loss to use, if available.
if mlm_targets:
structure["mlm_targets"] = mlm_targets
disto_logits = self.distogram_head(structure["s_z"])
disto_logits = (disto_logits + disto_logits.transpose(1, 2)) / 2
structure["distogram_logits"] = disto_logits
lm_logits = self.lm_head(structure["s_s"])
structure["lm_logits"] = lm_logits
structure["aatype"] = aa
make_atom14_masks(structure)
# Of course, this doesn't respect the true mask because it doesn't know about it...
# We're not going to properly mask change of index tensors:
# "residx_atom14_to_atom37",
# "residx_atom37_to_atom14",
for k in [
"atom14_atom_exists",
"atom37_atom_exists",
]:
structure[k] *= attention_mask.unsqueeze(-1)
structure["residue_index"] = position_ids
lddt_head = self.lddt_head(structure["states"]).reshape(structure["states"].shape[0], B, L, -1, self.lddt_bins)
structure["lddt_head"] = lddt_head
plddt = categorical_lddt(lddt_head[-1], bins=self.lddt_bins)
structure["plddt"] = plddt
ptm_logits = self.ptm_head(structure["s_z"])
structure["ptm_logits"] = ptm_logits
structure["ptm"] = compute_tm(ptm_logits, max_bin=31, no_bins=self.distogram_bins)
structure.update(compute_predicted_aligned_error(ptm_logits, max_bin=31, no_bins=self.distogram_bins))
return EsmForProteinFoldingOutput(**structure)
def af2_idx_to_esm_idx(self, aa, mask):
# avoid indexing on different devices
if self.af2_to_esm.device != aa.device:
self.af2_to_esm = self.af2_to_esm.to(aa.device)
aa = (aa + 1).masked_fill(mask != 1, 0)
return self.af2_to_esm[aa]
def compute_language_model_representations(self, esmaa: torch.Tensor) -> torch.Tensor:
device = next(self.parameters()).device
B, L = esmaa.shape # B = batch size, L = sequence length.
if self.config.esmfold_config.bypass_lm:
esm_s = torch.zeros(B, L, self.esm_s_combine.size[0], -1, self.esm_feats, device=device)
return esm_s
bosi, eosi = self.esm_dict_cls_idx, self.esm_dict_eos_idx
bos = esmaa.new_full((B, 1), bosi)
eos = esmaa.new_full((B, 1), self.esm_dict_padding_idx)
esmaa = torch.cat([bos, esmaa, eos], dim=1)
# Use the first padding index as eos during inference.
esmaa[range(B), (esmaa != 1).sum(1)] = eosi
# _, esm_z, esm_s = self.esm(esmaa, return_pairs=self.config.esmfold_config.use_esm_attn_map)
# Because we do not support use_esm_attn_map in the HF port as it is not used in any public models,
# esm_z is always None
esm_hidden_states = self.esm(esmaa, attention_mask=esmaa != 1, output_hidden_states=True)["hidden_states"]
esm_s = torch.stack(esm_hidden_states, dim=2)
esm_s = esm_s[:, 1:-1] # B, L, nLayers, C
return esm_s
def bert_mask(self, aa, esmaa, mask, pattern):
new_aa = aa.clone()
target = aa.clone()
new_esmaa = esmaa.clone()
new_aa[pattern == 1] = self.mask_idx
target[pattern != 1] = 0
new_esmaa[pattern == 1] = self.esm_dict_mask_idx
return new_aa, new_esmaa, target
@torch.no_grad()
def infer(
self,
seqs: Union[str, List[str]],
position_ids=None,
):
if isinstance(seqs, str):
lst = [seqs]
else:
lst = seqs
# Returns the raw outputs of the model given an input sequence.
device = next(self.parameters()).device
aatype = collate_dense_tensors(
[
torch.from_numpy(
residue_constants.sequence_to_onehot(
sequence=seq,
mapping=residue_constants.restype_order_with_x,
map_unknown_to_x=True,
)
)
.to(device)
.argmax(dim=1)
for seq in lst
]
) # B=1 x L
mask = collate_dense_tensors([aatype.new_ones(len(seq)) for seq in lst])
position_ids = (
torch.arange(aatype.shape[1], device=device).expand(len(lst), -1)
if position_ids is None
else position_ids.to(device)
)
if position_ids.ndim == 1:
position_ids = position_ids.unsqueeze(0)
return self.forward(
aatype,
mask,
position_ids=position_ids,
)
@staticmethod
def output_to_pdb(output: Dict) -> List[str]:
"""Returns the pbd (file) string from the model given the model output."""
output = {k: v.to("cpu").numpy() for k, v in output.items()}
pdbs = []
final_atom_positions = atom14_to_atom37(output["positions"][-1], output)
final_atom_mask = output["atom37_atom_exists"]
for i in range(output["aatype"].shape[0]):
aa = output["aatype"][i]
pred_pos = final_atom_positions[i]
mask = final_atom_mask[i]
resid = output["residue_index"][i] + 1
pred = OFProtein(
aatype=aa,
atom_positions=pred_pos,
atom_mask=mask,
residue_index=resid,
b_factors=output["plddt"][i],
)
pdbs.append(to_pdb(pred))
return pdbs
def infer_pdb(self, seqs, *args, **kwargs) -> str:
"""Returns the pdb (file) string from the model given an input sequence."""
assert isinstance(seqs, str)
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)[0]
def infer_pdbs(self, seqs: List[str], *args, **kwargs) -> List[str]:
"""Returns the pdb (file) string from the model given an input sequence."""
output = self.infer(seqs, *args, **kwargs)
return self.output_to_pdb(output)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/tokenization_esm.py
|
# coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for ESM."""
import os
from typing import List, Optional
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
def load_vocab_file(vocab_file):
with open(vocab_file, "r") as f:
lines = f.read().splitlines()
return [l.strip() for l in lines]
class EsmTokenizer(PreTrainedTokenizer):
"""
Constructs an ESM tokenizer.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(
self,
vocab_file,
unk_token="<unk>",
cls_token="<cls>",
pad_token="<pad>",
mask_token="<mask>",
eos_token="<eos>",
**kwargs,
):
self.all_tokens = load_vocab_file(vocab_file)
self._id_to_token = dict(enumerate(self.all_tokens))
self._token_to_id = {tok: ind for ind, tok in enumerate(self.all_tokens)}
super().__init__(
unk_token=unk_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
eos_token=eos_token,
**kwargs,
)
# TODO, all the tokens are added? But they are also part of the vocab... bit strange.
# none of them are special, but they all need special splitting.
self.unique_no_split_tokens = self.all_tokens
self._update_trie(self.unique_no_split_tokens)
def _convert_id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def _convert_token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def _tokenize(self, text, **kwargs):
return text.split()
def get_vocab(self):
base_vocab = self._token_to_id.copy()
base_vocab.update(self.added_tokens_encoder)
return base_vocab
def token_to_id(self, token: str) -> int:
return self._token_to_id.get(token, self._token_to_id.get(self.unk_token))
def id_to_token(self, index: int) -> str:
return self._id_to_token.get(index, self.unk_token)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
cls = [self.cls_token_id]
sep = [self.eos_token_id] # No sep token in ESM vocabulary
if token_ids_1 is None:
if self.eos_token_id is None:
return cls + token_ids_0
else:
return cls + token_ids_0 + sep
elif self.eos_token_id is None:
raise ValueError("Cannot tokenize multiple sequences when EOS token is not set!")
return cls + token_ids_0 + sep + token_ids_1 + sep # Multiple inputs always have an EOS token
def get_special_tokens_mask(
self, token_ids_0: List, token_ids_1: Optional[List] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieves sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer `prepare_for_model` or `encode_plus` methods.
Args:
token_ids_0 (`List[int]`):
List of ids of the first sequence.
token_ids_1 (`List[int]`, *optional*):
List of ids of the second sequence.
already_has_special_tokens (`bool`, *optional*, defaults to `False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return [1 if token in self.all_special_ids else 0 for token in token_ids_0]
mask = [1] + ([0] * len(token_ids_0)) + [1]
if token_ids_1 is not None:
mask += [0] * len(token_ids_1) + [1]
return mask
def save_vocabulary(self, save_directory, filename_prefix):
vocab_file = os.path.join(save_directory, (filename_prefix + "-" if filename_prefix else "") + "vocab.txt")
with open(vocab_file, "w") as f:
f.write("\n".join(self.all_tokens))
return (vocab_file,)
@property
def vocab_size(self) -> int:
return len(self.all_tokens)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/__init__.py
|
# Copyright 2022 Facebook and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import OptionalDependencyNotAvailable, _LazyModule, is_tf_available, is_torch_available
_import_structure = {
"configuration_esm": ["ESM_PRETRAINED_CONFIG_ARCHIVE_MAP", "EsmConfig"],
"tokenization_esm": ["EsmTokenizer"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_esm"] = [
"ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"EsmForMaskedLM",
"EsmForSequenceClassification",
"EsmForTokenClassification",
"EsmModel",
"EsmPreTrainedModel",
]
_import_structure["modeling_esmfold"] = ["EsmForProteinFolding", "EsmFoldPreTrainedModel"]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_esm"] = [
"TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFEsmForMaskedLM",
"TFEsmForSequenceClassification",
"TFEsmForTokenClassification",
"TFEsmModel",
"TFEsmPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_esm import ESM_PRETRAINED_CONFIG_ARCHIVE_MAP, EsmConfig
from .tokenization_esm import EsmTokenizer
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_esm import (
ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
EsmForMaskedLM,
EsmForSequenceClassification,
EsmForTokenClassification,
EsmModel,
EsmPreTrainedModel,
)
from .modeling_esmfold import EsmFoldPreTrainedModel, EsmForProteinFolding
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_esm import (
TF_ESM_PRETRAINED_MODEL_ARCHIVE_LIST,
TFEsmForMaskedLM,
TFEsmForSequenceClassification,
TFEsmForTokenClassification,
TFEsmModel,
TFEsmPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/convert_esm.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert ESM checkpoint."""
import argparse
import pathlib
from pathlib import Path
from tempfile import TemporaryDirectory
import esm as esm_module
import torch
from esm.esmfold.v1.misc import batch_encode_sequences as esmfold_encode_sequences
from esm.esmfold.v1.pretrained import esmfold_v1
from transformers.models.esm.configuration_esm import EsmConfig, EsmFoldConfig
from transformers.models.esm.modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmIntermediate,
EsmLayer,
EsmOutput,
EsmSelfAttention,
EsmSelfOutput,
)
from transformers.models.esm.modeling_esmfold import EsmForProteinFolding
from transformers.models.esm.tokenization_esm import EsmTokenizer
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
SAMPLE_DATA = [
(
"protein1",
"MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA",
),
("protein2", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA"),
("protein3", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLAGG"),
("protein4", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLA"),
]
MODEL_MAPPING = {
"esm1b_t33_650M_UR50S": esm_module.pretrained.esm1b_t33_650M_UR50S,
"esm1v_t33_650M_UR90S_1": esm_module.pretrained.esm1v_t33_650M_UR90S_1,
"esm1v_t33_650M_UR90S_2": esm_module.pretrained.esm1v_t33_650M_UR90S_2,
"esm1v_t33_650M_UR90S_3": esm_module.pretrained.esm1v_t33_650M_UR90S_3,
"esm1v_t33_650M_UR90S_4": esm_module.pretrained.esm1v_t33_650M_UR90S_4,
"esm1v_t33_650M_UR90S_5": esm_module.pretrained.esm1v_t33_650M_UR90S_5,
"esm2_t48_15B_UR50D": esm_module.pretrained.esm2_t48_15B_UR50D,
"esm2_t36_3B_UR50D": esm_module.pretrained.esm2_t36_3B_UR50D,
"esm2_t33_650M_UR50D": esm_module.pretrained.esm2_t33_650M_UR50D,
"esm2_t30_150M_UR50D": esm_module.pretrained.esm2_t30_150M_UR50D,
"esm2_t12_35M_UR50D": esm_module.pretrained.esm2_t12_35M_UR50D,
"esm2_t6_8M_UR50D": esm_module.pretrained.esm2_t6_8M_UR50D,
"esmfold_v1": esmfold_v1,
}
restypes = list("ARNDCQEGHILKMFPSTWYV")
restypes_with_x = restypes + ["X"]
restypes_with_extras = restypes_with_x + ["<pad>", "<mask>", "<cls>", "<sep>", "<eos>"]
def get_esmfold_tokenizer():
with TemporaryDirectory() as tempdir:
vocab = "\n".join(restypes_with_extras)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokenizer.pad_token_id = 0 # Overlaps with 'A' but that seems to be what they want
return hf_tokenizer
def transfer_and_check_weights(original_module, our_module):
status = our_module.load_state_dict(original_module.state_dict())
if status.missing_keys:
raise ValueError(f"Missing keys: {status.missing_keys}")
if status.unexpected_keys:
raise ValueError(f"Unexpected keys: {status.unexpected_keys}")
def convert_esm_checkpoint_to_pytorch(
model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str
):
"""
Copy/paste/tweak esm's weights to our BERT structure.
"""
if model.startswith("esmfold"):
esm = MODEL_MAPPING[model]()
else:
esm, alphabet = MODEL_MAPPING[model]()
esm.eval() # disable dropout
if model.startswith("esmfold"):
embed_dim = esm.esm.embed_dim
num_layers = esm.esm.num_layers
num_attention_heads = esm.esm.attention_heads
intermediate_size = 4 * embed_dim
token_dropout = esm.esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = True
esmfold_config = EsmFoldConfig()
for key, val in esm.cfg.items():
if hasattr(esmfold_config, key) and key != "trunk":
setattr(esmfold_config, key, val)
for key, val in esm.cfg.trunk.items():
if hasattr(esmfold_config.trunk, key) and key != "structure_module":
setattr(esmfold_config.trunk, key, val)
for key, val in esm.cfg.trunk.structure_module.items():
if hasattr(esmfold_config.trunk.structure_module, key):
setattr(esmfold_config.trunk.structure_module, key, val)
elif hasattr(esm, "args"):
# Indicates an ESM-1b or ESM-1v model
embed_dim = esm.args.embed_dim
num_layers = esm.args.layers
num_attention_heads = esm.args.attention_heads
intermediate_size = esm.args.ffn_embed_dim
token_dropout = esm.args.token_dropout
emb_layer_norm_before = True if esm.emb_layer_norm_before else False
position_embedding_type = "absolute"
is_folding_model = False
esmfold_config = None
else:
# Indicates an ESM-2 model
embed_dim = esm.embed_dim
num_layers = esm.num_layers
num_attention_heads = esm.attention_heads
intermediate_size = 4 * embed_dim # This is hardcoded in ESM-2
token_dropout = esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = False
esmfold_config = None
if is_folding_model:
alphabet = esm.esm.alphabet
vocab_list = tuple(alphabet.all_toks)
mask_token_id = alphabet.mask_idx
pad_token_id = alphabet.padding_idx
if is_folding_model:
original_esm_model = esm.esm
else:
original_esm_model = esm
config = EsmConfig(
vocab_size=original_esm_model.embed_tokens.num_embeddings,
mask_token_id=mask_token_id,
hidden_size=embed_dim,
num_hidden_layers=num_layers,
num_attention_heads=num_attention_heads,
intermediate_size=intermediate_size,
max_position_embeddings=1026,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
attention_probs_dropout_prob=0.0,
hidden_dropout_prob=0.0,
pad_token_id=pad_token_id,
emb_layer_norm_before=emb_layer_norm_before,
token_dropout=token_dropout,
position_embedding_type=position_embedding_type,
is_folding_model=is_folding_model,
esmfold_config=esmfold_config,
vocab_list=vocab_list,
)
if classification_head:
config.num_labels = esm.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our ESM config:", config)
if model.startswith("esmfold"):
model_class = EsmForProteinFolding
elif classification_head:
model_class = EsmForSequenceClassification
else:
model_class = EsmForMaskedLM
model = model_class(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.esm.embeddings.word_embeddings.weight = original_esm_model.embed_tokens.weight
if position_embedding_type == "absolute":
model.esm.embeddings.position_embeddings.weight = original_esm_model.embed_positions.weight
if config.emb_layer_norm_before:
model.esm.embeddings.layer_norm.weight = original_esm_model.emb_layer_norm_before.weight
model.esm.embeddings.layer_norm.bias = original_esm_model.emb_layer_norm_before.bias
model.esm.encoder.emb_layer_norm_after.weight = original_esm_model.emb_layer_norm_after.weight
model.esm.encoder.emb_layer_norm_after.bias = original_esm_model.emb_layer_norm_after.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: EsmLayer = model.esm.encoder.layer[i]
# esm_layer: TransformerSentenceEncoderLayer = original_esm_model.layers[i]
esm_layer = original_esm_model.layers[i]
# self attention
self_attn: EsmSelfAttention = layer.attention.self
assert (
esm_layer.self_attn.k_proj.weight.data.shape
== esm_layer.self_attn.q_proj.weight.data.shape
== esm_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
)
self_attn.query.weight.data = esm_layer.self_attn.q_proj.weight
self_attn.query.bias.data = esm_layer.self_attn.q_proj.bias
self_attn.key.weight.data = esm_layer.self_attn.k_proj.weight
self_attn.key.bias.data = esm_layer.self_attn.k_proj.bias
self_attn.value.weight.data = esm_layer.self_attn.v_proj.weight
self_attn.value.bias.data = esm_layer.self_attn.v_proj.bias
if getattr(esm_layer.self_attn, "rot_emb", None) is not None:
# Matt: Although inv_freq is not a trainable weight, it is computed at model init and cached.
# During the training of ESM-2 the model was converted to float16 precision, which also converts
# the inv_freq tensor, and the loss of precision remains even if the model is loaded later as float32.
# If we recompute inv_freq without this loss of precision then we will get subtly different rotary
# embeddings, which are enough to cause significant discrepancies in model outputs. To avoid this,
# we make sure the new model copies the data from the old inv_freq.
self_attn.rotary_embeddings.inv_freq.data = esm_layer.self_attn.rot_emb.inv_freq
# LayerNorm changes for pre-activation
layer.attention.LayerNorm.weight = esm_layer.self_attn_layer_norm.weight
layer.attention.LayerNorm.bias = esm_layer.self_attn_layer_norm.bias
layer.LayerNorm.weight = esm_layer.final_layer_norm.weight
layer.LayerNorm.bias = esm_layer.final_layer_norm.bias
# self-attention output
self_output: EsmSelfOutput = layer.attention.output
assert self_output.dense.weight.shape == esm_layer.self_attn.out_proj.weight.shape
self_output.dense.weight = esm_layer.self_attn.out_proj.weight
self_output.dense.bias = esm_layer.self_attn.out_proj.bias
# intermediate
intermediate: EsmIntermediate = layer.intermediate
assert intermediate.dense.weight.shape == esm_layer.fc1.weight.shape
intermediate.dense.weight = esm_layer.fc1.weight
intermediate.dense.bias = esm_layer.fc1.bias
# output
bert_output: EsmOutput = layer.output
assert bert_output.dense.weight.shape == esm_layer.fc2.weight.shape
bert_output.dense.weight = esm_layer.fc2.weight
bert_output.dense.bias = esm_layer.fc2.bias
# end of layer
if is_folding_model:
model.esm_s_combine.data = esm.esm_s_combine.data
model.af2_to_esm.data = esm.af2_to_esm.data
transfer_and_check_weights(esm.embedding, model.embedding)
transfer_and_check_weights(esm.esm_s_mlp, model.esm_s_mlp)
transfer_and_check_weights(esm.trunk, model.trunk)
transfer_and_check_weights(esm.distogram_head, model.distogram_head)
transfer_and_check_weights(esm.ptm_head, model.ptm_head)
transfer_and_check_weights(esm.lm_head, model.lm_head)
transfer_and_check_weights(esm.lddt_head, model.lddt_head)
elif classification_head:
model.classifier.dense.weight = esm.esm.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = esm.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = esm.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = esm.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = esm.lm_head.dense.weight
model.lm_head.dense.bias = esm.lm_head.dense.bias
model.lm_head.layer_norm.weight = esm.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = esm.lm_head.layer_norm.bias
model.lm_head.decoder.weight = esm.lm_head.weight
model.lm_head.bias = esm.lm_head.bias
# Contact prediction head
transfer_and_check_weights(esm.contact_head, model.esm.contact_head)
# Prepare data (first 2 sequences from ESMStructuralSplitDataset superfamily / 4)
if is_folding_model:
# Folding models aren't trained on masked inputs and don't like mask tokens.
sample_data = SAMPLE_DATA[:2]
else:
sample_data = SAMPLE_DATA
if is_folding_model:
hf_tokenizer = get_esmfold_tokenizer()
hf_tokens = hf_tokenizer(
[row[1] for row in sample_data], return_tensors="pt", padding=True, add_special_tokens=False
)
esmfold_aas, esmfold_mask, _, _, _ = esmfold_encode_sequences([row[1] for row in sample_data])
success = torch.all(hf_tokens["input_ids"] == esmfold_aas) and torch.all(
hf_tokens["attention_mask"] == esmfold_mask
)
else:
# Let's check that we get the same results.
batch_converter = alphabet.get_batch_converter()
batch_labels, batch_strs, batch_tokens = batch_converter(sample_data)
# Prepare tokenizer and make sure it matches
with TemporaryDirectory() as tempdir:
vocab = "\n".join(alphabet.all_toks)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokens = hf_tokenizer([row[1] for row in sample_data], return_tensors="pt", padding=True)
success = torch.all(hf_tokens["input_ids"] == batch_tokens)
print("Do both models tokenizers output the same tokens?", "🔥" if success else "💩")
if not success:
raise Exception("Tokenization does not match!")
with torch.no_grad():
if is_folding_model:
# Let's test the model in parts
# ESMFold always converts the ESM stem to float16, which requires float16 ops
# that don't exist on CPU. Therefore, to test it we need to run it on GPU. However,
# ESMFold is what we in the community call a "big boy" and so we desperately avoid putting both the
# original and the converted model on the GPU at the same time.
their_output = esm.cuda().infer([row[1] for row in sample_data])
our_output = model.cuda()(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
else:
our_output = model(**hf_tokens, output_hidden_states=True)
our_output = our_output["logits"]
if classification_head:
their_output = esm.model.classification_heads["mnli"](esm.extract_features(batch_tokens))
else:
their_output = esm(hf_tokens["input_ids"], repr_layers=list(range(999)))
their_output = their_output["logits"]
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - their_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-5)
else:
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
if not is_folding_model:
# Let's check contact prediction too
our_output = model.predict_contacts(hf_tokens["input_ids"], hf_tokens["attention_mask"])
their_output = esm.predict_contacts(hf_tokens["input_ids"])
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print("Contact prediction testing:")
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
del esm # Free up some memory before continuing
print(f"Saving tokenizer to {pytorch_dump_folder_path}")
hf_tokenizer.save_pretrained(pytorch_dump_folder_path)
if push_to_repo:
model.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
hf_tokenizer.push_to_hub(repo_id=push_to_repo, token_token=auth_token)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--pytorch_dump_folder_path", type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--classification_head", action="store_true", help="Whether to convert a final classification head."
)
parser.add_argument("--model", default=None, type=str, required=True, help="Name of model to convert.")
parser.add_argument("--push_to_repo", type=str, help="Repo to upload to (including username!).")
parser.add_argument("--auth_token", type=str, help="HuggingFace auth token.")
args = parser.parse_args()
convert_esm_checkpoint_to_pytorch(
args.model, args.pytorch_dump_folder_path, args.classification_head, args.push_to_repo, args.auth_token
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/esm/modeling_tf_esm.py
|
# coding=utf-8
# Copyright 2022 Meta and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ESM model."""
from __future__ import annotations
import os
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
keras,
shape_list,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/esm2_t6_8M_UR50D"
_CONFIG_FOR_DOC = "EsmConfig"
def rotate_half(x):
x1, x2 = tf.split(x, 2, axis=-1)
return tf.concat((-x2, x1), axis=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : tf.shape(x)[-2], :]
sin = sin[:, :, : tf.shape(x)[-2], :]
return (x * cos) + (rotate_half(x) * sin)
def symmetrize(x):
"Make layer symmetric in final two dimensions, used for contact prediction."
return x + tf.linalg.matrix_transpose(x) # Transposes last two dimensions only
def average_product_correct(x):
"Perform average product correct, used for contact prediction."
a1 = tf.reduce_sum(x, -1, keepdims=True)
a2 = tf.reduce_sum(x, -2, keepdims=True)
a12 = tf.reduce_sum(x, (-1, -2), keepdims=True)
avg = a1 * a2
avg = avg / a12
normalized = x - avg
return normalized
class TFRotaryEmbedding(keras.layers.Layer):
"""
Rotary position embeddings based on those in
[RoFormer](https://huggingface.co/docs/transformers/model_doc/roformer). Query and keys are transformed by rotation
matrices which depend on their relative positions.
"""
def __init__(self, dim: int, name=None):
super().__init__(name=name)
# Matt: The PyTorch version of this layer does a lot of work to cache values, but we just rely on TF compilation
# and/or XLA to sort out constants like that. It actually may not seem like this layer needs to be stateful at
# all when we benefit from TF compilation, but it does. The reason is that self.inv_freq is a buffer in the
# original implementation, but all the shared ESM checkpoints were trained with fp16 params. This means that
# the inv_freq tensor was stored as a float16, and we need to replicate those lower-precision values or our
# models give different outputs from the original.
self.dim = dim
def build(self, input_shape):
super().build(input_shape)
self.inv_freq = self.add_weight(
"inv_freq", shape=(self.dim // 2,), dtype=tf.float32, initializer=get_initializer(1.0), trainable=False
)
self.inv_freq.assign(
1.0 / (10000 ** (tf.range(start=0, limit=self.dim, delta=2, dtype=tf.float32) / self.dim))
)
def _compute_cos_sin(self, x, seq_dimension=2):
seq_len = tf.shape(x)[seq_dimension]
t = tf.range(seq_len, dtype=self.inv_freq.dtype)
freqs = tf.einsum("i, j -> ij", t, self.inv_freq) # Outer multiplication
emb = tf.concat((freqs, freqs), axis=-1)[None, None, :, :]
return tf.cos(emb), tf.sin(emb)
def call(self, q: tf.Tensor, k: tf.Tensor) -> Tuple[tf.Tensor, tf.Tensor]:
cos_emb, sin_emb = self._compute_cos_sin(k, seq_dimension=-2)
return (
apply_rotary_pos_emb(q, cos_emb, sin_emb),
apply_rotary_pos_emb(k, cos_emb, sin_emb),
)
class TFEsmContactPredictionHead(keras.layers.Layer):
"""Performs symmetrization, apc, and computes a logistic regression on the output features"""
def __init__(
self,
in_features: int,
bias=True,
eos_idx: int = 2,
name=None,
):
super().__init__(name=name)
self.eos_idx = eos_idx
self.in_features = in_features
self.regression = keras.layers.Dense(1, use_bias=bias, activation="sigmoid", name="regression")
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "regression", None) is not None:
with tf.name_scope(self.regression.name):
self.regression.build((None, self.in_features))
def call(self, tokens, attentions):
# remove eos token attentions
eos_mask = tf.cast(tokens != self.eos_idx, attentions.dtype)
eos_mask = tf.expand_dims(eos_mask, 1) * tf.expand_dims(eos_mask, 2)
attentions = attentions * eos_mask[:, None, None, :, :]
attentions = attentions[..., :-1, :-1]
# remove cls token attentions
attentions = attentions[..., 1:, 1:]
batch_size, layers, heads, seqlen, _ = shape_list(attentions)
attentions = tf.reshape(attentions, (batch_size, layers * heads, seqlen, seqlen))
# features: batch x channels x tokens x tokens (symmetric)
attentions = average_product_correct(symmetrize(attentions))
attentions = tf.transpose(attentions, perm=(0, 2, 3, 1))
return tf.squeeze(self.regression(attentions), 3)
class TFEsmEmbeddings(keras.layers.Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, name=None):
super().__init__(name=name)
self.word_embeddings = keras.layers.Embedding(
config.vocab_size,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="word_embeddings",
)
self.position_embeddings = keras.layers.Embedding(
config.max_position_embeddings,
config.hidden_size,
embeddings_initializer=get_initializer(config.initializer_range),
name="position_embeddings",
)
if config.emb_layer_norm_before:
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
else:
self.layer_norm = None
# Matt: I think this line was copied incorrectly from BERT, disabling for now
# self.dropout = Dropout(config.hidden_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.position_ids = tf.range(config.max_position_embeddings)[None, :]
self.padding_idx = config.pad_token_id
self.token_dropout = config.token_dropout
self.mask_token_id = config.mask_token_id
self.config = config
def call(
self, input_ids=None, attention_mask=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(input_ids, self.padding_idx, past_key_values_length)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.word_embeddings(input_ids)
# Note that if we want to support ESM-1 (not 1b!) in future then we need to support an
# embedding_scale factor here.
embeddings = inputs_embeds
# Matt: ESM has the option to handle masking in MLM in a slightly unusual way. If the token_dropout
# flag is False then it is handled in the same was as BERT/RoBERTa. If it is set to True, however,
# masked tokens are treated as if they were selected for input dropout and zeroed out.
# This "mask-dropout" is compensated for when masked tokens are not present, by scaling embeddings by
# a factor of (fraction of unmasked tokens during training) / (fraction of unmasked tokens in sample).
# This is analogous to the way that dropout layers scale down outputs during evaluation when not
# actually dropping out values (or, equivalently, scale up their un-dropped outputs in training).
if self.token_dropout:
embeddings = tf.where((input_ids == self.mask_token_id)[:, :, None], 0.0, embeddings)
mask_ratio_train = 0.15 * 0.8 # Hardcoded as the ratio used in all ESM model training runs
src_lengths = tf.cast(tf.reduce_sum(attention_mask, axis=-1), tf.float32)
masked_tokens = input_ids == self.mask_token_id
mask_ratio_observed = tf.math.count_nonzero(masked_tokens, dtype=tf.float32, axis=-1) / src_lengths
embeddings = embeddings * (1 - mask_ratio_train) / (1 - mask_ratio_observed)[:, None, None]
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.layer_norm is not None:
embeddings = self.layer_norm(embeddings)
if attention_mask is not None:
embeddings = embeddings * tf.cast(tf.expand_dims(attention_mask, -1), embeddings.dtype)
# Matt: I think this line was copied incorrectly from BERT, disabling it for now.
# embeddings = self.dropout(embeddings)
return embeddings
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: tf.Tensor
Returns: tf.Tensor
"""
input_shape = shape_list(inputs_embeds)[:-1]
sequence_length = input_shape[1]
position_ids = tf.range(
start=self.padding_idx + 1, limit=sequence_length + self.padding_idx + 1, dtype=tf.int64
)
return tf.broadcast_to(tf.expand_dims(position_ids, 0), input_shape)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "word_embeddings", None) is not None:
with tf.name_scope(self.word_embeddings.name):
self.word_embeddings.build(None)
if getattr(self, "position_embeddings", None) is not None:
with tf.name_scope(self.position_embeddings.name):
self.position_embeddings.build(None)
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
class TFEsmSelfAttention(keras.layers.Layer):
def __init__(self, config, position_embedding_type=None, name=None):
super().__init__(name=name)
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = keras.layers.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
self.rotary_embeddings = None
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = keras.layers.Embedding(
2 * config.max_position_embeddings - 1,
self.attention_head_size,
embeddings_initializer=get_initializer(config.initializer_range),
)
elif self.position_embedding_type == "rotary":
self.rotary_embeddings = TFRotaryEmbedding(dim=self.attention_head_size, name="rotary_embeddings")
self.is_decoder = config.is_decoder
self.config = config
def transpose_for_scores(self, x: tf.Tensor) -> tf.Tensor:
new_x_shape = shape_list(x)[:-1] + [self.num_attention_heads, self.attention_head_size]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, perm=(0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor | None = None,
head_mask: tf.Tensor | None = None,
encoder_hidden_states: tf.Tensor | None = None,
encoder_attention_mask: tf.Tensor | None = None,
past_key_value: Tuple[Tuple[tf.Tensor]] | None = None,
output_attentions: Optional[bool] = False,
training: bool = False,
) -> Tuple[tf.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = tf.concat([past_key_value[0], key_layer], axis=2)
value_layer = tf.concat([past_key_value[1], value_layer], axis=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Matt: Our BERT model (which this code was derived from) scales attention logits down by sqrt(head_dim).
# ESM scales the query down by the same factor instead. Modulo numerical stability these are equivalent,
# but not when rotary embeddings get involved. Therefore, we scale the query here to match the original
# ESM code and fix rotary embeddings.
query_layer = query_layer * self.attention_head_size**-0.5
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
if self.position_embedding_type == "rotary":
query_layer, key_layer = self.rotary_embeddings(query_layer, key_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = shape_list(hidden_states)[1]
position_ids_l = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), -1)
position_ids_r = tf.expand_dims(tf.range(seq_length, dtype=tf.int64), 0)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = tf.cast(positional_embedding, query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = tf.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = tf.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in EsmModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = stable_softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = attention_probs @ value_layer
context_layer = tf.transpose(context_layer, perm=(0, 2, 1, 3))
new_context_layer_shape = shape_list(context_layer)[:-2] + [self.all_head_size]
context_layer = tf.reshape(context_layer, new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "query", None) is not None:
with tf.name_scope(self.query.name):
self.query.build([None, None, self.config.hidden_size])
if getattr(self, "key", None) is not None:
with tf.name_scope(self.key.name):
self.key.build([None, None, self.config.hidden_size])
if getattr(self, "value", None) is not None:
with tf.name_scope(self.value.name):
self.value.build([None, None, self.config.hidden_size])
if getattr(self, "rotary_embeddings", None) is not None:
with tf.name_scope(self.rotary_embeddings.name):
self.rotary_embeddings.build(None)
class TFEsmSelfOutput(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmAttention(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.self = TFEsmSelfAttention(config, name="self")
self.output_layer = TFEsmSelfOutput(config, name="output")
self.pruned_heads = set()
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
hidden_states_ln = self.LayerNorm(hidden_states)
self_outputs = self.self(
hidden_states_ln,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
attention_output = self.output_layer(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self", None) is not None:
with tf.name_scope(self.self.name):
self.self.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmIntermediate(keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.intermediate_size,
kernel_initializer=get_initializer(config.initializer_range),
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = tf.nn.gelu(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmOutput(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.config = config
def call(self, hidden_states, input_tensor, training=False):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states += input_tensor
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.intermediate_size])
class TFEsmLayer(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TFEsmAttention(config, name="attention")
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise RuntimeError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TFEsmAttention(config)
self.intermediate = TFEsmIntermediate(config, name="intermediate")
self.output_layer = TFEsmOutput(config, name="output")
self.LayerNorm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.config = config
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
training=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
training=training,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise AttributeError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated"
" with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
training=training,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layernorm_output = self.LayerNorm(attention_output)
intermediate_output = self.intermediate(hidden_states=layernorm_output)
layer_output = self.output_layer(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + outputs # add attentions if we output them
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attention", None) is not None:
with tf.name_scope(self.attention.name):
self.attention.build(None)
if getattr(self, "intermediate", None) is not None:
with tf.name_scope(self.intermediate.name):
self.intermediate.build(None)
if getattr(self, "output_layer", None) is not None:
with tf.name_scope(self.output_layer.name):
self.output_layer.build(None)
if getattr(self, "LayerNorm", None) is not None:
with tf.name_scope(self.LayerNorm.name):
self.LayerNorm.build([None, None, self.config.hidden_size])
class TFEsmEncoder(keras.layers.Layer):
def __init__(self, config, name=None):
super().__init__(name=name)
self.config = config
self.layer = [TFEsmLayer(config, name=f"layer_._{i}") for i in range(config.num_hidden_layers)]
self.emb_layer_norm_after = keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="emb_layer_norm_after"
)
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
training,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.emb_layer_norm_after:
hidden_states = self.emb_layer_norm_after(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return TFBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "emb_layer_norm_after", None) is not None:
with tf.name_scope(self.emb_layer_norm_after.name):
self.emb_layer_norm_after.build([None, None, self.config.hidden_size])
if getattr(self, "layer", None) is not None:
for layer in self.layer:
with tf.name_scope(layer.name):
layer.build(None)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Esm
class TFEsmPooler(keras.layers.Layer):
def __init__(self, config: EsmConfig, **kwargs):
super().__init__(**kwargs)
self.dense = keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
class TFEsmPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = EsmConfig
base_model_prefix = "esm"
ESM_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a Keras [Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it as a
regular Keras model and refer to the TF/Keras documentation for all matters related to general usage and behavior.
Parameters:
config ([`EsmConfig`]): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
ESM_INPUTS_DOCSTRING = r"""
Args:
input_ids (`tf.Tensor` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
position_ids (`tf.Tensor` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` of shape `({0}, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmMainLayer(keras.layers.Layer):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in [Attention is
all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set
to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and
`add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass.
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config, add_pooling_layer=True, name=None, **kwargs):
super().__init__(name=name, **kwargs)
self.config = config
self.is_decoder = config.is_decoder
self.embeddings = TFEsmEmbeddings(config, name="embeddings")
self.encoder = TFEsmEncoder(config, name="encoder")
self.pooler = TFEsmPooler(config, name="pooler") if add_pooling_layer else None
self.contact_head = TFEsmContactPredictionHead(
in_features=self.config.num_hidden_layers * self.config.num_attention_heads, bias=True, name="contact_head"
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "embeddings", None) is not None:
with tf.name_scope(self.embeddings.name):
self.embeddings.build(None)
if getattr(self, "encoder", None) is not None:
with tf.name_scope(self.encoder.name):
self.encoder.build(None)
if getattr(self, "pooler", None) is not None:
with tf.name_scope(self.pooler.name):
self.pooler.build(None)
if getattr(self, "contact_head", None) is not None:
with tf.name_scope(self.contact_head.name):
self.contact_head.build(None)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value: tf.Variable):
self.embeddings.word_embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
raise NotImplementedError
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
if not self.config.is_decoder:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
if past_key_values is None:
past_key_values_length = 0
past_key_values = [None] * len(self.encoder.layer)
else:
past_key_values_length = shape_list(past_key_values[0][0])[-2]
if attention_mask is None:
attention_mask = tf.fill(dims=(batch_size, seq_length + past_key_values_length), value=1)
embedding_output = self.embeddings(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
training=training,
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(attention_mask)
mask_seq_length = seq_length + past_key_values_length
# Copied from `modeling_tf_t5.py`
# Provided a padding mask of dimensions [batch_size, mask_seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
if self.is_decoder:
seq_ids = tf.range(mask_seq_length)
causal_mask = tf.less_equal(
tf.tile(seq_ids[None, None, :], (batch_size, mask_seq_length, 1)),
seq_ids[None, :, None],
)
causal_mask = tf.cast(causal_mask, dtype=attention_mask.dtype)
extended_attention_mask = causal_mask * attention_mask[:, None, :]
attention_mask_shape = shape_list(extended_attention_mask)
extended_attention_mask = tf.reshape(
extended_attention_mask, (attention_mask_shape[0], 1, attention_mask_shape[1], attention_mask_shape[2])
)
if past_key_values[0] is not None:
# attention_mask needs to be sliced to the shape `[batch_size, 1, from_seq_length - cached_seq_length, to_seq_length]
extended_attention_mask = extended_attention_mask[:, :, -seq_length:, :]
else:
extended_attention_mask = tf.reshape(
attention_mask, (attention_mask_shape[0], 1, 1, attention_mask_shape[1])
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Copied from `modeling_tf_t5.py` with -1e9 -> -10000
if self.is_decoder and encoder_attention_mask is not None:
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, mask_seq_length, mask_seq_length]
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
encoder_attention_mask = tf.cast(encoder_attention_mask, dtype=extended_attention_mask.dtype)
num_dims_encoder_attention_mask = len(shape_list(encoder_attention_mask))
if num_dims_encoder_attention_mask == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if num_dims_encoder_attention_mask == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
# T5 has a mask that can compare sequence ids, we can simulate this here with this transposition
# Cf. https://github.com/tensorflow/mesh/blob/8d2465e9bc93129b913b5ccc6a59aa97abd96ec6/mesh_tensorflow/transformer/transformer_layers.py#L270
# encoder_extended_attention_mask = tf.math.equal(encoder_extended_attention_mask,
# tf.transpose(encoder_extended_attention_mask, perm=(-1, -2)))
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
encoder_outputs = self.encoder(
hidden_states=embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(hidden_states=sequence_output) if self.pooler is not None else None
if not return_dict:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def predict_contacts(self, tokens, attention_mask):
attns = self(tokens, attention_mask=attention_mask, return_dict=True, output_attentions=True).attentions
attns = tf.stack(attns, axis=1) # Matches the original model layout
# In the original model, attentions for padding tokens are completely zeroed out.
# This makes no difference most of the time because the other tokens won't attend to them,
# but it does for the contact prediction task, which takes attentions as input,
# so we have to mimic that here.
attention_mask = tf.cast(attention_mask, attns.dtype)
attns *= attention_mask[:, None, None, None]
attns *= attention_mask[:, None, None, :, None]
return self.contact_head(tokens, attns)
@add_start_docstrings(
"The bare ESM Model transformer outputting raw hidden-states without any specific head on top.",
ESM_START_DOCSTRING,
)
class TFEsmModel(TFEsmPreTrainedModel):
def __init__(self, config: EsmConfig, add_pooling_layer=True, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.esm = TFEsmMainLayer(config, add_pooling_layer=add_pooling_layer, name="esm")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
past_key_values: Optional[Tuple[Tuple[Union[np.ndarray, tf.Tensor]]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[TFBaseModelOutputWithPoolingAndCrossAttentions, Tuple[tf.Tensor]]:
r"""
encoder_hidden_states (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`Tuple[Tuple[tf.Tensor]]` of length `config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*, defaults to `True`):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`). Set to `False` during training, `True` during generation
"""
outputs = self.esm(
input_ids=input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
@add_start_docstrings("""ESM Model with a `language modeling` head on top.""", ESM_START_DOCSTRING)
class TFEsmForMaskedLM(TFEsmPreTrainedModel, TFMaskedLanguageModelingLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config):
super().__init__(config)
if config.is_decoder:
logger.warning(
"If you want to use `EsmForMaskedLM` make sure `config.is_decoder=False` for "
"bi-directional self-attention."
)
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.lm_head = TFEsmLMHead(config, name="lm_head")
if config.tie_word_embeddings:
# Ensure word embeddings are built so that we actually have something to tie
with tf.name_scope(os.path.join(self._name_scope(), "esm", "embeddings", "word_embeddings")):
self.esm.embeddings.word_embeddings.build((None, None))
self.lm_head.decoder = self.esm.embeddings.word_embeddings.weights[0]
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
def get_lm_head(self):
return self.lm_head
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
encoder_hidden_states: np.ndarray | tf.Tensor | None = None,
encoder_attention_mask: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFMaskedLMOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
kwargs (`Dict[str, any]`, optional, defaults to *{}*):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
masked_lm_loss = self.hf_compute_loss(labels=labels, logits=prediction_scores)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFMaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def predict_contacts(self, tokens, attention_mask):
return self.esm.predict_contacts(tokens, attention_mask)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "lm_head", None) is not None:
with tf.name_scope(self.lm_head.name):
self.lm_head.build(None)
class TFEsmLMHead(keras.layers.Layer):
"""ESM Head for masked language modeling."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
if config.tie_word_embeddings:
self.decoder = None
else:
self.decoder = keras.layers.Dense(
config.vocab_size,
kernel_initializer=get_initializer(config.initializer_range),
name="decoder",
use_bias=False,
)
self.config = config
def build(self, input_shape=None):
# Separate bias to match the PT model and allow weight cross-loading to work
# Put it in the build so it gets the right name when adding it as a weight
if self.built:
return
self.built = True
self.bias = self.add_weight("bias", shape=(self.config.vocab_size,), initializer="zeros", trainable=True)
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "layer_norm", None) is not None:
with tf.name_scope(self.layer_norm.name):
self.layer_norm.build([None, None, self.config.hidden_size])
if getattr(self, "decoder", None) is not None and not self.config.tie_word_embeddings:
with tf.name_scope(self.decoder.name):
self.decoder.build([None, None, self.config.hidden_size])
def get_bias(self):
return {"bias": self.bias}
def call(self, features):
x = self.dense(features)
x = tf.nn.gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
if self.config.tie_word_embeddings:
x = tf.matmul(x, self.decoder, transpose_b=True) + self.bias
else:
x = self.decoder(x) + self.bias
return x
@add_start_docstrings(
"""
ESM Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForSequenceClassification(TFEsmPreTrainedModel, TFSequenceClassificationLoss):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.config = config
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.classifier = TFEsmClassificationHead(config, name="classifier")
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFSequenceClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build(None)
@add_start_docstrings(
"""
ESM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
ESM_START_DOCSTRING,
)
class TFEsmForTokenClassification(TFEsmPreTrainedModel, TFTokenClassificationLoss):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.esm = TFEsmMainLayer(config, add_pooling_layer=False, name="esm")
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = keras.layers.Dense(config.num_labels, name="classifier")
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(ESM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
labels: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: bool = False,
) -> Union[TFTokenClassifierOutput, Tuple[tf.Tensor]]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.esm(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=training)
logits = self.classifier(sequence_output)
loss = None if labels is None else self.hf_compute_loss(labels, logits)
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "esm", None) is not None:
with tf.name_scope(self.esm.name):
self.esm.build(None)
if getattr(self, "classifier", None) is not None:
with tf.name_scope(self.classifier.name):
self.classifier.build([None, None, self.config.hidden_size])
class TFEsmClassificationHead(keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, name=None):
super().__init__(name=name)
self.dense = keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.dropout = keras.layers.Dropout(config.hidden_dropout_prob)
self.out_proj = keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
activation="linear",
name="out_proj",
)
self.config = config
def call(self, features, training=False):
x = features[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x, training=training)
x = self.dense(x)
x = self.dropout(x, training=training)
x = self.out_proj(x)
return x
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "dense", None) is not None:
with tf.name_scope(self.dense.name):
self.dense.build([None, None, self.config.hidden_size])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.config.hidden_size])
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: tf.Tensor x:
Returns: tf.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = tf.cast(input_ids != padding_idx, tf.int64)
incremental_indices = (tf.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + padding_idx
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/chunk_utils.py
|
# Copyright 2021 AlQuraishi Laboratory
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import math
from functools import partial
from typing import Any, Callable, Dict, Iterable, List, Optional, Sequence, Tuple, Union
import torch
from .tensor_utils import tensor_tree_map, tree_map
def _fetch_dims(tree: Union[dict, list, tuple, torch.Tensor]) -> List[Tuple[int, ...]]:
shapes = []
if isinstance(tree, dict):
for v in tree.values():
shapes.extend(_fetch_dims(v))
elif isinstance(tree, (list, tuple)):
for t in tree:
shapes.extend(_fetch_dims(t))
elif isinstance(tree, torch.Tensor):
shapes.append(tree.shape)
else:
raise ValueError("Not supported")
return shapes
@torch.jit.ignore
def _flat_idx_to_idx(flat_idx: int, dims: Tuple[int, ...]) -> Tuple[int, ...]:
idx = []
for d in reversed(dims):
idx.append(flat_idx % d)
flat_idx = flat_idx // d
return tuple(reversed(idx))
@torch.jit.ignore
def _get_minimal_slice_set(
start: Sequence[int],
end: Sequence[int],
dims: Sequence[int],
start_edges: Optional[Sequence[bool]] = None,
end_edges: Optional[Sequence[bool]] = None,
) -> List[Tuple[slice, ...]]:
"""
Produces an ordered sequence of tensor slices that, when used in sequence on a tensor with shape dims, yields
tensors that contain every leaf in the contiguous range [start, end]. Care is taken to yield a short sequence of
slices, and perhaps even the shortest possible (I'm pretty sure it's the latter).
end is INCLUSIVE.
"""
# start_edges and end_edges both indicate whether, starting from any given
# dimension, the start/end index is at the top/bottom edge of the
# corresponding tensor, modeled as a tree
def reduce_edge_list(l: List[bool]) -> None:
tally = True
for i in range(len(l)):
reversed_idx = -1 * (i + 1)
l[reversed_idx] &= tally
tally = l[reversed_idx]
if start_edges is None:
start_edges = [s == 0 for s in start]
reduce_edge_list(start_edges)
if end_edges is None:
end_edges = [e == (d - 1) for e, d in zip(end, dims)]
reduce_edge_list(end_edges)
# Base cases. Either start/end are empty and we're done, or the final,
# one-dimensional tensor can be simply sliced
if len(start) == 0:
return [()]
elif len(start) == 1:
return [(slice(start[0], end[0] + 1),)]
slices: List[Tuple[slice, ...]] = []
path_list: List[slice] = []
# Dimensions common to start and end can be selected directly
for s, e in zip(start, end):
if s == e:
path_list.append(slice(s, s + 1))
else:
break
path: Tuple[slice, ...] = tuple(path_list)
divergence_idx = len(path)
# start == end, and we're done
if divergence_idx == len(dims):
return [path]
def upper() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
sdi = start[divergence_idx]
return tuple(
path + (slice(sdi, sdi + 1),) + s
for s in _get_minimal_slice_set(
start[divergence_idx + 1 :],
[d - 1 for d in dims[divergence_idx + 1 :]],
dims[divergence_idx + 1 :],
start_edges=start_edges[divergence_idx + 1 :],
end_edges=[True for _ in end_edges[divergence_idx + 1 :]],
)
)
def lower() -> Tuple[Tuple[slice, ...], ...]:
assert start_edges is not None
assert end_edges is not None
edi = end[divergence_idx]
return tuple(
path + (slice(edi, edi + 1),) + s
for s in _get_minimal_slice_set(
[0 for _ in start[divergence_idx + 1 :]],
end[divergence_idx + 1 :],
dims[divergence_idx + 1 :],
start_edges=[True for _ in start_edges[divergence_idx + 1 :]],
end_edges=end_edges[divergence_idx + 1 :],
)
)
# If both start and end are at the edges of the subtree rooted at
# divergence_idx, we can just select the whole subtree at once
if start_edges[divergence_idx] and end_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx] + 1),))
# If just start is at the edge, we can grab almost all of the subtree,
# treating only the ragged bottom edge as an edge case
elif start_edges[divergence_idx]:
slices.append(path + (slice(start[divergence_idx], end[divergence_idx]),))
slices.extend(lower())
# Analogous to the previous case, but the top is ragged this time
elif end_edges[divergence_idx]:
slices.extend(upper())
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx] + 1),))
# If both sides of the range are ragged, we need to handle both sides
# separately. If there's contiguous meat in between them, we can index it
# in one big chunk
else:
slices.extend(upper())
middle_ground = end[divergence_idx] - start[divergence_idx]
if middle_ground > 1:
slices.append(path + (slice(start[divergence_idx] + 1, end[divergence_idx]),))
slices.extend(lower())
return slices
@torch.jit.ignore
def _chunk_slice(t: torch.Tensor, flat_start: int, flat_end: int, no_batch_dims: int) -> torch.Tensor:
"""
Equivalent to
t.reshape((-1,) + t.shape[no_batch_dims:])[flat_start:flat_end]
but without the need for the initial reshape call, which can be memory-intensive in certain situations. The only
reshape operations in this function are performed on sub-tensors that scale with (flat_end - flat_start), the chunk
size.
"""
batch_dims = t.shape[:no_batch_dims]
start_idx = list(_flat_idx_to_idx(flat_start, batch_dims))
# _get_minimal_slice_set is inclusive
end_idx = list(_flat_idx_to_idx(flat_end - 1, batch_dims))
# Get an ordered list of slices to perform
slices = _get_minimal_slice_set(
start_idx,
end_idx,
batch_dims,
)
sliced_tensors = [t[s] for s in slices]
return torch.cat([s.view((-1,) + t.shape[no_batch_dims:]) for s in sliced_tensors])
def chunk_layer(
layer: Callable,
inputs: Dict[str, Any],
chunk_size: int,
no_batch_dims: int,
low_mem: bool = False,
_out: Any = None,
_add_into_out: bool = False,
) -> Any:
"""
Implements the "chunking" procedure described in section 1.11.8.
Layer outputs and inputs are assumed to be simple "pytrees," consisting only of (arbitrarily nested) lists, tuples,
and dicts with torch.Tensor leaves.
Args:
layer:
The layer to be applied chunk-wise
inputs:
A (non-nested) dictionary of keyworded inputs. All leaves must be tensors and must share the same batch
dimensions.
chunk_size:
The number of sub-batches per chunk. If multiple batch dimensions are specified, a "sub-batch" is defined
as a single indexing of all batch dimensions simultaneously (s.t. the number of sub-batches is the product
of the batch dimensions).
no_batch_dims:
How many of the initial dimensions of each input tensor can be considered batch dimensions.
low_mem:
Avoids flattening potentially large input tensors. Unnecessary in most cases, and is ever so slightly
slower than the default setting.
Returns:
The reassembled output of the layer on the inputs.
"""
if not (len(inputs) > 0):
raise ValueError("Must provide at least one input")
initial_dims = [shape[:no_batch_dims] for shape in _fetch_dims(inputs)]
orig_batch_dims = tuple([max(s) for s in zip(*initial_dims)])
def _prep_inputs(t: torch.Tensor) -> torch.Tensor:
if not low_mem:
if not sum(t.shape[:no_batch_dims]) == no_batch_dims:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
t = t.reshape(-1, *t.shape[no_batch_dims:])
else:
t = t.expand(orig_batch_dims + t.shape[no_batch_dims:])
return t
prepped_inputs: Dict[str, Any] = tensor_tree_map(_prep_inputs, inputs)
prepped_outputs = None
if _out is not None:
prepped_outputs = tensor_tree_map(lambda t: t.view([-1] + list(t.shape[no_batch_dims:])), _out)
flat_batch_dim = 1
for d in orig_batch_dims:
flat_batch_dim *= d
no_chunks = flat_batch_dim // chunk_size + (flat_batch_dim % chunk_size != 0)
def _select_chunk(t: torch.Tensor) -> torch.Tensor:
return t[i : i + chunk_size] if t.shape[0] != 1 else t
i = 0
out = prepped_outputs
for _ in range(no_chunks):
# Chunk the input
if not low_mem:
select_chunk = _select_chunk
else:
select_chunk = partial(
_chunk_slice,
flat_start=i,
flat_end=min(flat_batch_dim, i + chunk_size),
no_batch_dims=len(orig_batch_dims),
)
chunks: Dict[str, Any] = tensor_tree_map(select_chunk, prepped_inputs)
# Run the layer on the chunk
output_chunk = layer(**chunks)
# Allocate space for the output
if out is None:
out = tensor_tree_map(lambda t: t.new_zeros((flat_batch_dim,) + t.shape[1:]), output_chunk)
# Put the chunk in its pre-allocated space
if isinstance(output_chunk, dict):
def assign(d1: dict, d2: dict) -> None:
for k, v in d1.items():
if isinstance(v, dict):
assign(v, d2[k])
else:
if _add_into_out:
v[i : i + chunk_size] += d2[k]
else:
v[i : i + chunk_size] = d2[k]
assign(out, output_chunk)
elif isinstance(output_chunk, tuple):
for x1, x2 in zip(out, output_chunk):
if _add_into_out:
x1[i : i + chunk_size] += x2
else:
x1[i : i + chunk_size] = x2
elif isinstance(output_chunk, torch.Tensor):
if _add_into_out:
out[i : i + chunk_size] += output_chunk
else:
out[i : i + chunk_size] = output_chunk
else:
raise ValueError("Not supported")
i += chunk_size
out = tensor_tree_map(lambda t: t.view(orig_batch_dims + t.shape[1:]), out)
return out
class ChunkSizeTuner:
def __init__(
self,
# Heuristically, runtimes for most of the modules in the network
# plateau earlier than this on all GPUs I've run the model on.
max_chunk_size: int = 512,
):
self.max_chunk_size = max_chunk_size
self.cached_chunk_size: Optional[int] = None
self.cached_arg_data: Optional[tuple] = None
def _determine_favorable_chunk_size(self, fn: Callable, args: tuple, min_chunk_size: int) -> int:
logging.info("Tuning chunk size...")
if min_chunk_size >= self.max_chunk_size:
return min_chunk_size
candidates: List[int] = [2**l for l in range(int(math.log(self.max_chunk_size, 2)) + 1)]
candidates = [c for c in candidates if c > min_chunk_size]
candidates = [min_chunk_size] + candidates
candidates[-1] += 4
def test_chunk_size(chunk_size: int) -> bool:
try:
with torch.no_grad():
fn(*args, chunk_size=chunk_size)
return True
except RuntimeError:
return False
min_viable_chunk_size_index = 0
i = len(candidates) - 1
while i > min_viable_chunk_size_index:
viable = test_chunk_size(candidates[i])
if not viable:
i = (min_viable_chunk_size_index + i) // 2
else:
min_viable_chunk_size_index = i
i = (i + len(candidates) - 1) // 2
return candidates[min_viable_chunk_size_index]
def _compare_arg_caches(self, ac1: Iterable, ac2: Iterable) -> bool:
consistent = True
for a1, a2 in zip(ac1, ac2):
assert type(ac1) == type(ac2)
if isinstance(ac1, (list, tuple)):
consistent &= self._compare_arg_caches(a1, a2)
elif isinstance(ac1, dict):
a1_items = [v for _, v in sorted(a1.items(), key=lambda x: x[0])]
a2_items = [v for _, v in sorted(a2.items(), key=lambda x: x[0])]
consistent &= self._compare_arg_caches(a1_items, a2_items)
else:
consistent &= a1 == a2
return consistent
def tune_chunk_size(
self,
representative_fn: Callable,
args: tuple,
min_chunk_size: int,
) -> int:
consistent = True
arg_data: tuple = tree_map(lambda a: a.shape if isinstance(a, torch.Tensor) else a, args, object)
if self.cached_arg_data is not None:
# If args have changed shape/value, we need to re-tune
assert len(self.cached_arg_data) == len(arg_data)
consistent = self._compare_arg_caches(self.cached_arg_data, arg_data)
else:
# Otherwise, we can reuse the precomputed value
consistent = False
if not consistent:
self.cached_chunk_size = self._determine_favorable_chunk_size(
representative_fn,
args,
min_chunk_size,
)
self.cached_arg_data = arg_data
assert self.cached_chunk_size is not None
return self.cached_chunk_size
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/residue_constants.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Constants used in AlphaFold."""
import collections
import copy
import functools
from importlib import resources
from typing import Dict, List, Mapping, Sequence, Tuple
import numpy as np
# Internal import (35fd).
# Distance from one CA to next CA [trans configuration: omega = 180].
ca_ca = 3.80209737096
# Format: The list for each AA type contains chi1, chi2, chi3, chi4 in
# this order (or a relevant subset from chi1 onwards). ALA and GLY don't have
# chi angles so their chi angle lists are empty.
chi_angles_atoms: Dict[str, List[List[str]]] = {
"ALA": [],
# Chi5 in arginine is always 0 +- 5 degrees, so ignore it.
"ARG": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "NE"], ["CG", "CD", "NE", "CZ"]],
"ASN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"ASP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "OD1"]],
"CYS": [["N", "CA", "CB", "SG"]],
"GLN": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "OE1"]],
"GLY": [],
"HIS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "ND1"]],
"ILE": [["N", "CA", "CB", "CG1"], ["CA", "CB", "CG1", "CD1"]],
"LEU": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"LYS": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"], ["CB", "CG", "CD", "CE"], ["CG", "CD", "CE", "NZ"]],
"MET": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "SD"], ["CB", "CG", "SD", "CE"]],
"PHE": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"PRO": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD"]],
"SER": [["N", "CA", "CB", "OG"]],
"THR": [["N", "CA", "CB", "OG1"]],
"TRP": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"TYR": [["N", "CA", "CB", "CG"], ["CA", "CB", "CG", "CD1"]],
"VAL": [["N", "CA", "CB", "CG1"]],
}
# If chi angles given in fixed-length array, this matrix determines how to mask
# them for each AA type. The order is as per restype_order (see below).
chi_angles_mask: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[1.0, 1.0, 1.0, 1.0], # ARG
[1.0, 1.0, 0.0, 0.0], # ASN
[1.0, 1.0, 0.0, 0.0], # ASP
[1.0, 0.0, 0.0, 0.0], # CYS
[1.0, 1.0, 1.0, 0.0], # GLN
[1.0, 1.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[1.0, 1.0, 0.0, 0.0], # HIS
[1.0, 1.0, 0.0, 0.0], # ILE
[1.0, 1.0, 0.0, 0.0], # LEU
[1.0, 1.0, 1.0, 1.0], # LYS
[1.0, 1.0, 1.0, 0.0], # MET
[1.0, 1.0, 0.0, 0.0], # PHE
[1.0, 1.0, 0.0, 0.0], # PRO
[1.0, 0.0, 0.0, 0.0], # SER
[1.0, 0.0, 0.0, 0.0], # THR
[1.0, 1.0, 0.0, 0.0], # TRP
[1.0, 1.0, 0.0, 0.0], # TYR
[1.0, 0.0, 0.0, 0.0], # VAL
]
# The following chi angles are pi periodic: they can be rotated by a multiple
# of pi without affecting the structure.
chi_pi_periodic: List[List[float]] = [
[0.0, 0.0, 0.0, 0.0], # ALA
[0.0, 0.0, 0.0, 0.0], # ARG
[0.0, 0.0, 0.0, 0.0], # ASN
[0.0, 1.0, 0.0, 0.0], # ASP
[0.0, 0.0, 0.0, 0.0], # CYS
[0.0, 0.0, 0.0, 0.0], # GLN
[0.0, 0.0, 1.0, 0.0], # GLU
[0.0, 0.0, 0.0, 0.0], # GLY
[0.0, 0.0, 0.0, 0.0], # HIS
[0.0, 0.0, 0.0, 0.0], # ILE
[0.0, 0.0, 0.0, 0.0], # LEU
[0.0, 0.0, 0.0, 0.0], # LYS
[0.0, 0.0, 0.0, 0.0], # MET
[0.0, 1.0, 0.0, 0.0], # PHE
[0.0, 0.0, 0.0, 0.0], # PRO
[0.0, 0.0, 0.0, 0.0], # SER
[0.0, 0.0, 0.0, 0.0], # THR
[0.0, 0.0, 0.0, 0.0], # TRP
[0.0, 1.0, 0.0, 0.0], # TYR
[0.0, 0.0, 0.0, 0.0], # VAL
[0.0, 0.0, 0.0, 0.0], # UNK
]
# Atoms positions relative to the 8 rigid groups, defined by the pre-omega, phi,
# psi and chi angles:
# 0: 'backbone group',
# 1: 'pre-omega-group', (empty)
# 2: 'phi-group', (currently empty, because it defines only hydrogens)
# 3: 'psi-group',
# 4,5,6,7: 'chi1,2,3,4-group'
# The atom positions are relative to the axis-end-atom of the corresponding
# rotation axis. The x-axis is in direction of the rotation axis, and the y-axis
# is defined such that the dihedral-angle-definiting atom (the last entry in
# chi_angles_atoms above) is in the xy-plane (with a positive y-coordinate).
# format: [atomname, group_idx, rel_position]
rigid_group_atom_positions: Dict[str, List[Tuple[str, int, Tuple[float, float, float]]]] = {
"ALA": [
("N", 0, (-0.525, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.529, -0.774, -1.205)),
("O", 3, (0.627, 1.062, 0.000)),
],
"ARG": [
("N", 0, (-0.524, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.524, -0.778, -1.209)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.616, 1.390, -0.000)),
("CD", 5, (0.564, 1.414, 0.000)),
("NE", 6, (0.539, 1.357, -0.000)),
("NH1", 7, (0.206, 2.301, 0.000)),
("NH2", 7, (2.078, 0.978, -0.000)),
("CZ", 7, (0.758, 1.093, -0.000)),
],
"ASN": [
("N", 0, (-0.536, 1.357, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.531, -0.787, -1.200)),
("O", 3, (0.625, 1.062, 0.000)),
("CG", 4, (0.584, 1.399, 0.000)),
("ND2", 5, (0.593, -1.188, 0.001)),
("OD1", 5, (0.633, 1.059, 0.000)),
],
"ASP": [
("N", 0, (-0.525, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, 0.000, -0.000)),
("CB", 0, (-0.526, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.593, 1.398, -0.000)),
("OD1", 5, (0.610, 1.091, 0.000)),
("OD2", 5, (0.592, -1.101, -0.003)),
],
"CYS": [
("N", 0, (-0.522, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, 0.000)),
("CB", 0, (-0.519, -0.773, -1.212)),
("O", 3, (0.625, 1.062, -0.000)),
("SG", 4, (0.728, 1.653, 0.000)),
],
"GLN": [
("N", 0, (-0.526, 1.361, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.525, -0.779, -1.207)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.615, 1.393, 0.000)),
("CD", 5, (0.587, 1.399, -0.000)),
("NE2", 6, (0.593, -1.189, -0.001)),
("OE1", 6, (0.634, 1.060, 0.000)),
],
"GLU": [
("N", 0, (-0.528, 1.361, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, -0.000, -0.000)),
("CB", 0, (-0.526, -0.781, -1.207)),
("O", 3, (0.626, 1.062, 0.000)),
("CG", 4, (0.615, 1.392, 0.000)),
("CD", 5, (0.600, 1.397, 0.000)),
("OE1", 6, (0.607, 1.095, -0.000)),
("OE2", 6, (0.589, -1.104, -0.001)),
],
"GLY": [
("N", 0, (-0.572, 1.337, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.517, -0.000, -0.000)),
("O", 3, (0.626, 1.062, -0.000)),
],
"HIS": [
("N", 0, (-0.527, 1.360, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.525, -0.778, -1.208)),
("O", 3, (0.625, 1.063, 0.000)),
("CG", 4, (0.600, 1.370, -0.000)),
("CD2", 5, (0.889, -1.021, 0.003)),
("ND1", 5, (0.744, 1.160, -0.000)),
("CE1", 5, (2.030, 0.851, 0.002)),
("NE2", 5, (2.145, -0.466, 0.004)),
],
"ILE": [
("N", 0, (-0.493, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.536, -0.793, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.534, 1.437, -0.000)),
("CG2", 4, (0.540, -0.785, -1.199)),
("CD1", 5, (0.619, 1.391, 0.000)),
],
"LEU": [
("N", 0, (-0.520, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.522, -0.773, -1.214)),
("O", 3, (0.625, 1.063, -0.000)),
("CG", 4, (0.678, 1.371, 0.000)),
("CD1", 5, (0.530, 1.430, -0.000)),
("CD2", 5, (0.535, -0.774, 1.200)),
],
"LYS": [
("N", 0, (-0.526, 1.362, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, 0.000)),
("CB", 0, (-0.524, -0.778, -1.208)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.619, 1.390, 0.000)),
("CD", 5, (0.559, 1.417, 0.000)),
("CE", 6, (0.560, 1.416, 0.000)),
("NZ", 7, (0.554, 1.387, 0.000)),
],
"MET": [
("N", 0, (-0.521, 1.364, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, 0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.210)),
("O", 3, (0.625, 1.062, -0.000)),
("CG", 4, (0.613, 1.391, -0.000)),
("SD", 5, (0.703, 1.695, 0.000)),
("CE", 6, (0.320, 1.786, -0.000)),
],
"PHE": [
("N", 0, (-0.518, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, 0.000, -0.000)),
("CB", 0, (-0.525, -0.776, -1.212)),
("O", 3, (0.626, 1.062, -0.000)),
("CG", 4, (0.607, 1.377, 0.000)),
("CD1", 5, (0.709, 1.195, -0.000)),
("CD2", 5, (0.706, -1.196, 0.000)),
("CE1", 5, (2.102, 1.198, -0.000)),
("CE2", 5, (2.098, -1.201, -0.000)),
("CZ", 5, (2.794, -0.003, -0.001)),
],
"PRO": [
("N", 0, (-0.566, 1.351, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, 0.000)),
("CB", 0, (-0.546, -0.611, -1.293)),
("O", 3, (0.621, 1.066, 0.000)),
("CG", 4, (0.382, 1.445, 0.0)),
# ('CD', 5, (0.427, 1.440, 0.0)),
("CD", 5, (0.477, 1.424, 0.0)), # manually made angle 2 degrees larger
],
"SER": [
("N", 0, (-0.529, 1.360, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, -0.000)),
("CB", 0, (-0.518, -0.777, -1.211)),
("O", 3, (0.626, 1.062, -0.000)),
("OG", 4, (0.503, 1.325, 0.000)),
],
"THR": [
("N", 0, (-0.517, 1.364, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.526, 0.000, -0.000)),
("CB", 0, (-0.516, -0.793, -1.215)),
("O", 3, (0.626, 1.062, 0.000)),
("CG2", 4, (0.550, -0.718, -1.228)),
("OG1", 4, (0.472, 1.353, 0.000)),
],
"TRP": [
("N", 0, (-0.521, 1.363, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.525, -0.000, 0.000)),
("CB", 0, (-0.523, -0.776, -1.212)),
("O", 3, (0.627, 1.062, 0.000)),
("CG", 4, (0.609, 1.370, -0.000)),
("CD1", 5, (0.824, 1.091, 0.000)),
("CD2", 5, (0.854, -1.148, -0.005)),
("CE2", 5, (2.186, -0.678, -0.007)),
("CE3", 5, (0.622, -2.530, -0.007)),
("NE1", 5, (2.140, 0.690, -0.004)),
("CH2", 5, (3.028, -2.890, -0.013)),
("CZ2", 5, (3.283, -1.543, -0.011)),
("CZ3", 5, (1.715, -3.389, -0.011)),
],
"TYR": [
("N", 0, (-0.522, 1.362, 0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.524, -0.000, -0.000)),
("CB", 0, (-0.522, -0.776, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG", 4, (0.607, 1.382, -0.000)),
("CD1", 5, (0.716, 1.195, -0.000)),
("CD2", 5, (0.713, -1.194, -0.001)),
("CE1", 5, (2.107, 1.200, -0.002)),
("CE2", 5, (2.104, -1.201, -0.003)),
("OH", 5, (4.168, -0.002, -0.005)),
("CZ", 5, (2.791, -0.001, -0.003)),
],
"VAL": [
("N", 0, (-0.494, 1.373, -0.000)),
("CA", 0, (0.000, 0.000, 0.000)),
("C", 0, (1.527, -0.000, -0.000)),
("CB", 0, (-0.533, -0.795, -1.213)),
("O", 3, (0.627, 1.062, -0.000)),
("CG1", 4, (0.540, 1.429, -0.000)),
("CG2", 4, (0.533, -0.776, 1.203)),
],
}
# A list of atoms (excluding hydrogen) for each AA type. PDB naming convention.
residue_atoms: Dict[str, List[str]] = {
"ALA": ["C", "CA", "CB", "N", "O"],
"ARG": ["C", "CA", "CB", "CG", "CD", "CZ", "N", "NE", "O", "NH1", "NH2"],
"ASP": ["C", "CA", "CB", "CG", "N", "O", "OD1", "OD2"],
"ASN": ["C", "CA", "CB", "CG", "N", "ND2", "O", "OD1"],
"CYS": ["C", "CA", "CB", "N", "O", "SG"],
"GLU": ["C", "CA", "CB", "CG", "CD", "N", "O", "OE1", "OE2"],
"GLN": ["C", "CA", "CB", "CG", "CD", "N", "NE2", "O", "OE1"],
"GLY": ["C", "CA", "N", "O"],
"HIS": ["C", "CA", "CB", "CG", "CD2", "CE1", "N", "ND1", "NE2", "O"],
"ILE": ["C", "CA", "CB", "CG1", "CG2", "CD1", "N", "O"],
"LEU": ["C", "CA", "CB", "CG", "CD1", "CD2", "N", "O"],
"LYS": ["C", "CA", "CB", "CG", "CD", "CE", "N", "NZ", "O"],
"MET": ["C", "CA", "CB", "CG", "CE", "N", "O", "SD"],
"PHE": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O"],
"PRO": ["C", "CA", "CB", "CG", "CD", "N", "O"],
"SER": ["C", "CA", "CB", "N", "O", "OG"],
"THR": ["C", "CA", "CB", "CG2", "N", "O", "OG1"],
"TRP": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE2", "CE3", "CZ2", "CZ3", "CH2", "N", "NE1", "O"],
"TYR": ["C", "CA", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "N", "O", "OH"],
"VAL": ["C", "CA", "CB", "CG1", "CG2", "N", "O"],
}
# Naming swaps for ambiguous atom names.
# Due to symmetries in the amino acids the naming of atoms is ambiguous in
# 4 of the 20 amino acids.
# (The LDDT paper lists 7 amino acids as ambiguous, but the naming ambiguities
# in LEU, VAL and ARG can be resolved by using the 3d constellations of
# the 'ambiguous' atoms and their neighbours)
# TODO: ^ interpret this
residue_atom_renaming_swaps: Dict[str, Dict[str, str]] = {
"ASP": {"OD1": "OD2"},
"GLU": {"OE1": "OE2"},
"PHE": {"CD1": "CD2", "CE1": "CE2"},
"TYR": {"CD1": "CD2", "CE1": "CE2"},
}
# Van der Waals radii [Angstroem] of the atoms (from Wikipedia)
van_der_waals_radius: Dict[str, float] = {
"C": 1.7,
"N": 1.55,
"O": 1.52,
"S": 1.8,
}
Bond = collections.namedtuple("Bond", ["atom1_name", "atom2_name", "length", "stddev"])
BondAngle = collections.namedtuple(
"BondAngle",
["atom1_name", "atom2_name", "atom3name", "angle_rad", "stddev"],
)
def map_structure_with_atom_order(in_list: list, first_call: bool = True) -> list:
# Maps strings in a nested list structure to their corresponding index in atom_order
if first_call:
in_list = copy.deepcopy(in_list)
for i in range(len(in_list)):
if isinstance(in_list[i], list):
in_list[i] = map_structure_with_atom_order(in_list[i], first_call=False)
elif isinstance(in_list[i], str):
in_list[i] = atom_order[in_list[i]]
else:
raise ValueError("Unexpected type when mapping nested lists!")
return in_list
@functools.lru_cache(maxsize=None)
def load_stereo_chemical_props() -> (
Tuple[
Mapping[str, List[Bond]],
Mapping[str, List[Bond]],
Mapping[str, List[BondAngle]],
]
):
"""Load stereo_chemical_props.txt into a nice structure.
Load literature values for bond lengths and bond angles and translate bond angles into the length of the opposite
edge of the triangle ("residue_virtual_bonds").
Returns:
residue_bonds: dict that maps resname --> list of Bond tuples residue_virtual_bonds: dict that maps resname -->
list of Bond tuples residue_bond_angles: dict that maps resname --> list of BondAngle tuples
"""
# TODO: this file should be downloaded in a setup script
stereo_chemical_props = resources.read_text("openfold.resources", "stereo_chemical_props.txt")
lines_iter = iter(stereo_chemical_props.splitlines())
# Load bond lengths.
residue_bonds: Dict[str, List[Bond]] = {}
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, bond_length, stddev = line.split()
atom1, atom2 = bond.split("-")
if resname not in residue_bonds:
residue_bonds[resname] = []
residue_bonds[resname].append(Bond(atom1, atom2, float(bond_length), float(stddev)))
residue_bonds["UNK"] = []
# Load bond angles.
residue_bond_angles: Dict[str, List[BondAngle]] = {}
next(lines_iter) # Skip empty line.
next(lines_iter) # Skip header line.
for line in lines_iter:
if line.strip() == "-":
break
bond, resname, angle_degree, stddev_degree = line.split()
atom1, atom2, atom3 = bond.split("-")
if resname not in residue_bond_angles:
residue_bond_angles[resname] = []
residue_bond_angles[resname].append(
BondAngle(
atom1,
atom2,
atom3,
float(angle_degree) / 180.0 * np.pi,
float(stddev_degree) / 180.0 * np.pi,
)
)
residue_bond_angles["UNK"] = []
def make_bond_key(atom1_name: str, atom2_name: str) -> str:
"""Unique key to lookup bonds."""
return "-".join(sorted([atom1_name, atom2_name]))
# Translate bond angles into distances ("virtual bonds").
residue_virtual_bonds: Dict[str, List[Bond]] = {}
for resname, bond_angles in residue_bond_angles.items():
# Create a fast lookup dict for bond lengths.
bond_cache: Dict[str, Bond] = {}
for b in residue_bonds[resname]:
bond_cache[make_bond_key(b.atom1_name, b.atom2_name)] = b
residue_virtual_bonds[resname] = []
for ba in bond_angles:
bond1 = bond_cache[make_bond_key(ba.atom1_name, ba.atom2_name)]
bond2 = bond_cache[make_bond_key(ba.atom2_name, ba.atom3name)]
# Compute distance between atom1 and atom3 using the law of cosines
# c^2 = a^2 + b^2 - 2ab*cos(gamma).
gamma = ba.angle_rad
length = np.sqrt(bond1.length**2 + bond2.length**2 - 2 * bond1.length * bond2.length * np.cos(gamma))
# Propagation of uncertainty assuming uncorrelated errors.
dl_outer = 0.5 / length
dl_dgamma = (2 * bond1.length * bond2.length * np.sin(gamma)) * dl_outer
dl_db1 = (2 * bond1.length - 2 * bond2.length * np.cos(gamma)) * dl_outer
dl_db2 = (2 * bond2.length - 2 * bond1.length * np.cos(gamma)) * dl_outer
stddev = np.sqrt(
(dl_dgamma * ba.stddev) ** 2 + (dl_db1 * bond1.stddev) ** 2 + (dl_db2 * bond2.stddev) ** 2
)
residue_virtual_bonds[resname].append(Bond(ba.atom1_name, ba.atom3name, length, stddev))
return (residue_bonds, residue_virtual_bonds, residue_bond_angles)
# Between-residue bond lengths for general bonds (first element) and for Proline
# (second element).
between_res_bond_length_c_n: Tuple[float, float] = (1.329, 1.341)
between_res_bond_length_stddev_c_n: Tuple[float, float] = (0.014, 0.016)
# Between-residue cos_angles.
between_res_cos_angles_c_n_ca: Tuple[float, float] = (-0.5203, 0.0353) # degrees: 121.352 +- 2.315
between_res_cos_angles_ca_c_n: Tuple[float, float] = (-0.4473, 0.0311) # degrees: 116.568 +- 1.995
# This mapping is used when we need to store atom data in a format that requires
# fixed atom data size for every residue (e.g. a numpy array).
atom_types: List[str] = [
"N",
"CA",
"C",
"CB",
"O",
"CG",
"CG1",
"CG2",
"OG",
"OG1",
"SG",
"CD",
"CD1",
"CD2",
"ND1",
"ND2",
"OD1",
"OD2",
"SD",
"CE",
"CE1",
"CE2",
"CE3",
"NE",
"NE1",
"NE2",
"OE1",
"OE2",
"CH2",
"NH1",
"NH2",
"OH",
"CZ",
"CZ2",
"CZ3",
"NZ",
"OXT",
]
atom_order: Dict[str, int] = {atom_type: i for i, atom_type in enumerate(atom_types)}
atom_type_num = len(atom_types) # := 37.
# A compact atom encoding with 14 columns
# pylint: disable=line-too-long
# pylint: disable=bad-whitespace
restype_name_to_atom14_names: Dict[str, List[str]] = {
"ALA": ["N", "CA", "C", "O", "CB", "", "", "", "", "", "", "", "", ""],
"ARG": ["N", "CA", "C", "O", "CB", "CG", "CD", "NE", "CZ", "NH1", "NH2", "", "", ""],
"ASN": ["N", "CA", "C", "O", "CB", "CG", "OD1", "ND2", "", "", "", "", "", ""],
"ASP": ["N", "CA", "C", "O", "CB", "CG", "OD1", "OD2", "", "", "", "", "", ""],
"CYS": ["N", "CA", "C", "O", "CB", "SG", "", "", "", "", "", "", "", ""],
"GLN": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "NE2", "", "", "", "", ""],
"GLU": ["N", "CA", "C", "O", "CB", "CG", "CD", "OE1", "OE2", "", "", "", "", ""],
"GLY": ["N", "CA", "C", "O", "", "", "", "", "", "", "", "", "", ""],
"HIS": ["N", "CA", "C", "O", "CB", "CG", "ND1", "CD2", "CE1", "NE2", "", "", "", ""],
"ILE": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "CD1", "", "", "", "", "", ""],
"LEU": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "", "", "", "", "", ""],
"LYS": ["N", "CA", "C", "O", "CB", "CG", "CD", "CE", "NZ", "", "", "", "", ""],
"MET": ["N", "CA", "C", "O", "CB", "CG", "SD", "CE", "", "", "", "", "", ""],
"PHE": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "", "", ""],
"PRO": ["N", "CA", "C", "O", "CB", "CG", "CD", "", "", "", "", "", "", ""],
"SER": ["N", "CA", "C", "O", "CB", "OG", "", "", "", "", "", "", "", ""],
"THR": ["N", "CA", "C", "O", "CB", "OG1", "CG2", "", "", "", "", "", "", ""],
"TRP": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "NE1", "CE2", "CE3", "CZ2", "CZ3", "CH2"],
"TYR": ["N", "CA", "C", "O", "CB", "CG", "CD1", "CD2", "CE1", "CE2", "CZ", "OH", "", ""],
"VAL": ["N", "CA", "C", "O", "CB", "CG1", "CG2", "", "", "", "", "", "", ""],
"UNK": ["", "", "", "", "", "", "", "", "", "", "", "", "", ""],
}
# pylint: enable=line-too-long
# pylint: enable=bad-whitespace
# This is the standard residue order when coding AA type as a number.
# Reproduce it by taking 3-letter AA codes and sorting them alphabetically.
restypes: List[str] = [
"A",
"R",
"N",
"D",
"C",
"Q",
"E",
"G",
"H",
"I",
"L",
"K",
"M",
"F",
"P",
"S",
"T",
"W",
"Y",
"V",
]
restype_order: Dict[str, int] = {restype: i for i, restype in enumerate(restypes)}
restype_num = len(restypes) # := 20.
unk_restype_index = restype_num # Catch-all index for unknown restypes.
restypes_with_x: List[str] = restypes + ["X"]
restype_order_with_x: Dict[str, int] = {restype: i for i, restype in enumerate(restypes_with_x)}
def sequence_to_onehot(sequence: str, mapping: Mapping[str, int], map_unknown_to_x: bool = False) -> np.ndarray:
"""Maps the given sequence into a one-hot encoded matrix.
Args:
sequence: An amino acid sequence.
mapping: A dictionary mapping amino acids to integers.
map_unknown_to_x: If True, any amino acid that is not in the mapping will be
mapped to the unknown amino acid 'X'. If the mapping doesn't contain amino acid 'X', an error will be thrown.
If False, any amino acid not in the mapping will throw an error.
Returns:
A numpy array of shape (seq_len, num_unique_aas) with one-hot encoding of the sequence.
Raises:
ValueError: If the mapping doesn't contain values from 0 to
num_unique_aas - 1 without any gaps.
"""
num_entries = max(mapping.values()) + 1
if sorted(set(mapping.values())) != list(range(num_entries)):
raise ValueError(
"The mapping must have values from 0 to num_unique_aas-1 without any gaps. Got: %s"
% sorted(mapping.values())
)
one_hot_arr = np.zeros((len(sequence), num_entries), dtype=np.int32)
for aa_index, aa_type in enumerate(sequence):
if map_unknown_to_x:
if aa_type.isalpha() and aa_type.isupper():
aa_id = mapping.get(aa_type, mapping["X"])
else:
raise ValueError(f"Invalid character in the sequence: {aa_type}")
else:
aa_id = mapping[aa_type]
one_hot_arr[aa_index, aa_id] = 1
return one_hot_arr
restype_1to3: Dict[str, str] = {
"A": "ALA",
"R": "ARG",
"N": "ASN",
"D": "ASP",
"C": "CYS",
"Q": "GLN",
"E": "GLU",
"G": "GLY",
"H": "HIS",
"I": "ILE",
"L": "LEU",
"K": "LYS",
"M": "MET",
"F": "PHE",
"P": "PRO",
"S": "SER",
"T": "THR",
"W": "TRP",
"Y": "TYR",
"V": "VAL",
}
# NB: restype_3to1 differs from Bio.PDB.protein_letters_3to1 by being a simple
# 1-to-1 mapping of 3 letter names to one letter names. The latter contains
# many more, and less common, three letter names as keys and maps many of these
# to the same one letter name (including 'X' and 'U' which we don't use here).
restype_3to1: Dict[str, str] = {v: k for k, v in restype_1to3.items()}
# Define a restype name for all unknown residues.
unk_restype = "UNK"
resnames: List[str] = [restype_1to3[r] for r in restypes] + [unk_restype]
resname_to_idx: Dict[str, int] = {resname: i for i, resname in enumerate(resnames)}
# The mapping here uses hhblits convention, so that B is mapped to D, J and O
# are mapped to X, U is mapped to C, and Z is mapped to E. Other than that the
# remaining 20 amino acids are kept in alphabetical order.
# There are 2 non-amino acid codes, X (representing any amino acid) and
# "-" representing a missing amino acid in an alignment. The id for these
# codes is put at the end (20 and 21) so that they can easily be ignored if
# desired.
HHBLITS_AA_TO_ID: Dict[str, int] = {
"A": 0,
"B": 2,
"C": 1,
"D": 2,
"E": 3,
"F": 4,
"G": 5,
"H": 6,
"I": 7,
"J": 20,
"K": 8,
"L": 9,
"M": 10,
"N": 11,
"O": 20,
"P": 12,
"Q": 13,
"R": 14,
"S": 15,
"T": 16,
"U": 1,
"V": 17,
"W": 18,
"X": 20,
"Y": 19,
"Z": 3,
"-": 21,
}
# Partial inversion of HHBLITS_AA_TO_ID.
ID_TO_HHBLITS_AA: Dict[int, str] = {
0: "A",
1: "C", # Also U.
2: "D", # Also B.
3: "E", # Also Z.
4: "F",
5: "G",
6: "H",
7: "I",
8: "K",
9: "L",
10: "M",
11: "N",
12: "P",
13: "Q",
14: "R",
15: "S",
16: "T",
17: "V",
18: "W",
19: "Y",
20: "X", # Includes J and O.
21: "-",
}
restypes_with_x_and_gap: List[str] = restypes + ["X", "-"]
MAP_HHBLITS_AATYPE_TO_OUR_AATYPE: Tuple[int, ...] = tuple(
restypes_with_x_and_gap.index(ID_TO_HHBLITS_AA[i]) for i in range(len(restypes_with_x_and_gap))
)
def _make_standard_atom_mask() -> np.ndarray:
"""Returns [num_res_types, num_atom_types] mask array."""
# +1 to account for unknown (all 0s).
mask = np.zeros([restype_num + 1, atom_type_num], dtype=np.int32)
for restype, restype_letter in enumerate(restypes):
restype_name = restype_1to3[restype_letter]
atom_names = residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = atom_order[atom_name]
mask[restype, atom_type] = 1
return mask
STANDARD_ATOM_MASK = _make_standard_atom_mask()
# A one hot representation for the first and second atoms defining the axis
# of rotation for each chi-angle in each residue.
def chi_angle_atom(atom_index: int) -> np.ndarray:
"""Define chi-angle rigid groups via one-hot representations."""
chi_angles_index = {}
one_hots = []
for k, v in chi_angles_atoms.items():
indices = [atom_types.index(s[atom_index]) for s in v]
indices.extend([-1] * (4 - len(indices)))
chi_angles_index[k] = indices
for r in restypes:
res3 = restype_1to3[r]
one_hot = np.eye(atom_type_num)[chi_angles_index[res3]]
one_hots.append(one_hot)
one_hots.append(np.zeros([4, atom_type_num])) # Add zeros for residue `X`.
one_hot = np.stack(one_hots, axis=0)
one_hot = np.transpose(one_hot, [0, 2, 1])
return one_hot
chi_atom_1_one_hot = chi_angle_atom(1)
chi_atom_2_one_hot = chi_angle_atom(2)
# An array like chi_angles_atoms but using indices rather than names.
chi_angles_atom_indices_list: List[List[List[str]]] = [chi_angles_atoms[restype_1to3[r]] for r in restypes]
chi_angles_atom_indices_ours: list = map_structure_with_atom_order(chi_angles_atom_indices_list)
chi_angles_atom_indices = np.array(
[chi_atoms + ([[0, 0, 0, 0]] * (4 - len(chi_atoms))) for chi_atoms in chi_angles_atom_indices_list]
)
# Mapping from (res_name, atom_name) pairs to the atom's chi group index
# and atom index within that group.
chi_groups_for_atom: Dict[Tuple[str, str], List[Tuple[int, int]]] = collections.defaultdict(list)
for res_name, chi_angle_atoms_for_res in chi_angles_atoms.items():
for chi_group_i, chi_group in enumerate(chi_angle_atoms_for_res):
for atom_i, atom in enumerate(chi_group):
chi_groups_for_atom[(res_name, atom)].append((chi_group_i, atom_i))
chi_groups_for_atom = dict(chi_groups_for_atom)
def _make_rigid_transformation_4x4(ex: np.ndarray, ey: np.ndarray, translation: np.ndarray) -> np.ndarray:
"""Create a rigid 4x4 transformation matrix from two axes and transl."""
# Normalize ex.
ex_normalized = ex / np.linalg.norm(ex)
# make ey perpendicular to ex
ey_normalized = ey - np.dot(ey, ex_normalized) * ex_normalized
ey_normalized /= np.linalg.norm(ey_normalized)
# compute ez as cross product
eznorm = np.cross(ex_normalized, ey_normalized)
m = np.stack([ex_normalized, ey_normalized, eznorm, translation]).transpose()
m = np.concatenate([m, [[0.0, 0.0, 0.0, 1.0]]], axis=0)
return m
# create an array with (restype, atomtype) --> rigid_group_idx
# and an array with (restype, atomtype, coord) for the atom positions
# and compute affine transformation matrices (4,4) from one rigid group to the
# previous group
restype_atom37_to_rigid_group = np.zeros([21, 37], dtype=int)
restype_atom37_mask = np.zeros([21, 37], dtype=np.float32)
restype_atom37_rigid_group_positions = np.zeros([21, 37, 3], dtype=np.float32)
restype_atom14_to_rigid_group = np.zeros([21, 14], dtype=int)
restype_atom14_mask = np.zeros([21, 14], dtype=np.float32)
restype_atom14_rigid_group_positions = np.zeros([21, 14, 3], dtype=np.float32)
restype_rigid_group_default_frame = np.zeros([21, 8, 4, 4], dtype=np.float32)
def _make_rigid_group_constants() -> None:
"""Fill the arrays above."""
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
for atomname, group_idx, atom_position in rigid_group_atom_positions[resname]:
atomtype = atom_order[atomname]
restype_atom37_to_rigid_group[restype, atomtype] = group_idx
restype_atom37_mask[restype, atomtype] = 1
restype_atom37_rigid_group_positions[restype, atomtype, :] = atom_position
atom14idx = restype_name_to_atom14_names[resname].index(atomname)
restype_atom14_to_rigid_group[restype, atom14idx] = group_idx
restype_atom14_mask[restype, atom14idx] = 1
restype_atom14_rigid_group_positions[restype, atom14idx, :] = atom_position
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_positions: Dict[str, np.ndarray] = {
name: np.array(pos) for name, _, pos in rigid_group_atom_positions[resname]
}
# backbone to backbone is the identity transform
restype_rigid_group_default_frame[restype, 0, :, :] = np.eye(4)
# pre-omega-frame to backbone (currently dummy identity matrix)
restype_rigid_group_default_frame[restype, 1, :, :] = np.eye(4)
# phi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["N"] - atom_positions["CA"],
ey=np.array([1.0, 0.0, 0.0]),
translation=atom_positions["N"],
)
restype_rigid_group_default_frame[restype, 2, :, :] = mat
# psi-frame to backbone
mat = _make_rigid_transformation_4x4(
ex=atom_positions["C"] - atom_positions["CA"],
ey=atom_positions["CA"] - atom_positions["N"],
translation=atom_positions["C"],
)
restype_rigid_group_default_frame[restype, 3, :, :] = mat
# chi1-frame to backbone
if chi_angles_mask[restype][0]:
base_atom_names = chi_angles_atoms[resname][0]
base_atom_positions = [atom_positions[name] for name in base_atom_names]
mat = _make_rigid_transformation_4x4(
ex=base_atom_positions[2] - base_atom_positions[1],
ey=base_atom_positions[0] - base_atom_positions[1],
translation=base_atom_positions[2],
)
restype_rigid_group_default_frame[restype, 4, :, :] = mat
# chi2-frame to chi1-frame
# chi3-frame to chi2-frame
# chi4-frame to chi3-frame
# luckily all rotation axes for the next frame start at (0,0,0) of the
# previous frame
for chi_idx in range(1, 4):
if chi_angles_mask[restype][chi_idx]:
axis_end_atom_name = chi_angles_atoms[resname][chi_idx][2]
axis_end_atom_position = atom_positions[axis_end_atom_name]
mat = _make_rigid_transformation_4x4(
ex=axis_end_atom_position,
ey=np.array([-1.0, 0.0, 0.0]),
translation=axis_end_atom_position,
)
restype_rigid_group_default_frame[restype, 4 + chi_idx, :, :] = mat
_make_rigid_group_constants()
def make_atom14_dists_bounds(
overlap_tolerance: float = 1.5,
bond_length_tolerance_factor: int = 15,
) -> Dict[str, np.ndarray]:
"""compute upper and lower bounds for bonds to assess violations."""
restype_atom14_bond_lower_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_upper_bound = np.zeros([21, 14, 14], np.float32)
restype_atom14_bond_stddev = np.zeros([21, 14, 14], np.float32)
residue_bonds, residue_virtual_bonds, _ = load_stereo_chemical_props()
for restype, restype_letter in enumerate(restypes):
resname = restype_1to3[restype_letter]
atom_list = restype_name_to_atom14_names[resname]
# create lower and upper bounds for clashes
for atom1_idx, atom1_name in enumerate(atom_list):
if not atom1_name:
continue
atom1_radius = van_der_waals_radius[atom1_name[0]]
for atom2_idx, atom2_name in enumerate(atom_list):
if (not atom2_name) or atom1_idx == atom2_idx:
continue
atom2_radius = van_der_waals_radius[atom2_name[0]]
lower = atom1_radius + atom2_radius - overlap_tolerance
upper = 1e10
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
# overwrite lower and upper bounds for bonds and angles
for b in residue_bonds[resname] + residue_virtual_bonds[resname]:
atom1_idx = atom_list.index(b.atom1_name)
atom2_idx = atom_list.index(b.atom2_name)
lower = b.length - bond_length_tolerance_factor * b.stddev
upper = b.length + bond_length_tolerance_factor * b.stddev
restype_atom14_bond_lower_bound[restype, atom1_idx, atom2_idx] = lower
restype_atom14_bond_lower_bound[restype, atom2_idx, atom1_idx] = lower
restype_atom14_bond_upper_bound[restype, atom1_idx, atom2_idx] = upper
restype_atom14_bond_upper_bound[restype, atom2_idx, atom1_idx] = upper
restype_atom14_bond_stddev[restype, atom1_idx, atom2_idx] = b.stddev
restype_atom14_bond_stddev[restype, atom2_idx, atom1_idx] = b.stddev
return {
"lower_bound": restype_atom14_bond_lower_bound, # shape (21,14,14)
"upper_bound": restype_atom14_bond_upper_bound, # shape (21,14,14)
"stddev": restype_atom14_bond_stddev, # shape (21,14,14)
}
restype_atom14_ambiguous_atoms = np.zeros((21, 14), dtype=np.float32)
restype_atom14_ambiguous_atoms_swap_idx: np.ndarray = np.tile(np.arange(14, dtype=int), (21, 1))
def _make_atom14_ambiguity_feats() -> None:
for res, pairs in residue_atom_renaming_swaps.items():
res_idx = restype_order[restype_3to1[res]]
for atom1, atom2 in pairs.items():
atom1_idx = restype_name_to_atom14_names[res].index(atom1)
atom2_idx = restype_name_to_atom14_names[res].index(atom2)
restype_atom14_ambiguous_atoms[res_idx, atom1_idx] = 1
restype_atom14_ambiguous_atoms[res_idx, atom2_idx] = 1
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom1_idx] = atom2_idx
restype_atom14_ambiguous_atoms_swap_idx[res_idx, atom2_idx] = atom1_idx
_make_atom14_ambiguity_feats()
def aatype_to_str_sequence(aatype: Sequence[int]) -> str:
return "".join([restypes_with_x[aatype[i]] for i in range(len(aatype))])
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/loss.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Optional, Tuple
import torch
def _calculate_bin_centers(boundaries: torch.Tensor) -> torch.Tensor:
step = boundaries[1] - boundaries[0]
bin_centers = boundaries + step / 2
bin_centers = torch.cat([bin_centers, (bin_centers[-1] + step).unsqueeze(-1)], dim=0)
return bin_centers
def _calculate_expected_aligned_error(
alignment_confidence_breaks: torch.Tensor,
aligned_distance_error_probs: torch.Tensor,
) -> Tuple[torch.Tensor, torch.Tensor]:
bin_centers = _calculate_bin_centers(alignment_confidence_breaks)
return (
torch.sum(aligned_distance_error_probs * bin_centers, dim=-1),
bin_centers[-1],
)
def compute_predicted_aligned_error(
logits: torch.Tensor,
max_bin: int = 31,
no_bins: int = 64,
**kwargs,
) -> Dict[str, torch.Tensor]:
"""Computes aligned confidence metrics from logits.
Args:
logits: [*, num_res, num_res, num_bins] the logits output from
PredictedAlignedErrorHead.
max_bin: Maximum bin value
no_bins: Number of bins
Returns:
aligned_confidence_probs: [*, num_res, num_res, num_bins] the predicted
aligned error probabilities over bins for each residue pair.
predicted_aligned_error: [*, num_res, num_res] the expected aligned distance
error for each pair of residues.
max_predicted_aligned_error: [*] the maximum predicted error possible.
"""
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
aligned_confidence_probs = torch.nn.functional.softmax(logits, dim=-1)
predicted_aligned_error, max_predicted_aligned_error = _calculate_expected_aligned_error(
alignment_confidence_breaks=boundaries,
aligned_distance_error_probs=aligned_confidence_probs,
)
return {
"aligned_confidence_probs": aligned_confidence_probs,
"predicted_aligned_error": predicted_aligned_error,
"max_predicted_aligned_error": max_predicted_aligned_error,
}
def compute_tm(
logits: torch.Tensor,
residue_weights: Optional[torch.Tensor] = None,
max_bin: int = 31,
no_bins: int = 64,
eps: float = 1e-8,
**kwargs,
) -> torch.Tensor:
if residue_weights is None:
residue_weights = logits.new_ones(logits.shape[-2])
boundaries = torch.linspace(0, max_bin, steps=(no_bins - 1), device=logits.device)
bin_centers = _calculate_bin_centers(boundaries)
torch.sum(residue_weights)
n = logits.shape[-2]
clipped_n = max(n, 19)
d0 = 1.24 * (clipped_n - 15) ** (1.0 / 3) - 1.8
probs = torch.nn.functional.softmax(logits, dim=-1)
tm_per_bin = 1.0 / (1 + (bin_centers**2) / (d0**2))
predicted_tm_term = torch.sum(probs * tm_per_bin, dim=-1)
normed_residue_mask = residue_weights / (eps + residue_weights.sum())
per_alignment = torch.sum(predicted_tm_term * normed_residue_mask, dim=-1)
weighted = per_alignment * residue_weights
argmax = (weighted == torch.max(weighted)).nonzero()[0]
return per_alignment[tuple(argmax)]
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/data_transforms.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
import numpy as np
import torch
from . import residue_constants as rc
from .tensor_utils import tensor_tree_map, tree_map
def make_atom14_masks(protein: Dict[str, torch.Tensor]) -> Dict[str, torch.Tensor]:
"""Construct denser atom positions (14 dimensions instead of 37)."""
restype_atom14_to_atom37_list = []
restype_atom37_to_atom14_list = []
restype_atom14_mask_list = []
for rt in rc.restypes:
atom_names = rc.restype_name_to_atom14_names[rc.restype_1to3[rt]]
restype_atom14_to_atom37_list.append([(rc.atom_order[name] if name else 0) for name in atom_names])
atom_name_to_idx14 = {name: i for i, name in enumerate(atom_names)}
restype_atom37_to_atom14_list.append(
[(atom_name_to_idx14[name] if name in atom_name_to_idx14 else 0) for name in rc.atom_types]
)
restype_atom14_mask_list.append([(1.0 if name else 0.0) for name in atom_names])
# Add dummy mapping for restype 'UNK'
restype_atom14_to_atom37_list.append([0] * 14)
restype_atom37_to_atom14_list.append([0] * 37)
restype_atom14_mask_list.append([0.0] * 14)
restype_atom14_to_atom37 = torch.tensor(
restype_atom14_to_atom37_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom37_to_atom14 = torch.tensor(
restype_atom37_to_atom14_list,
dtype=torch.int32,
device=protein["aatype"].device,
)
restype_atom14_mask = torch.tensor(
restype_atom14_mask_list,
dtype=torch.float32,
device=protein["aatype"].device,
)
protein_aatype = protein["aatype"].to(torch.long)
# create the mapping for (residx, atom14) --> atom37, i.e. an array
# with shape (num_res, 14) containing the atom37 indices for this protein
residx_atom14_to_atom37 = restype_atom14_to_atom37[protein_aatype]
residx_atom14_mask = restype_atom14_mask[protein_aatype]
protein["atom14_atom_exists"] = residx_atom14_mask
protein["residx_atom14_to_atom37"] = residx_atom14_to_atom37.long()
# create the gather indices for mapping back
residx_atom37_to_atom14 = restype_atom37_to_atom14[protein_aatype]
protein["residx_atom37_to_atom14"] = residx_atom37_to_atom14.long()
# create the corresponding mask
restype_atom37_mask = torch.zeros([21, 37], dtype=torch.float32, device=protein["aatype"].device)
for restype, restype_letter in enumerate(rc.restypes):
restype_name = rc.restype_1to3[restype_letter]
atom_names = rc.residue_atoms[restype_name]
for atom_name in atom_names:
atom_type = rc.atom_order[atom_name]
restype_atom37_mask[restype, atom_type] = 1
residx_atom37_mask = restype_atom37_mask[protein_aatype]
protein["atom37_atom_exists"] = residx_atom37_mask
return protein
def make_atom14_masks_np(batch: Dict[str, torch.Tensor]) -> Dict[str, np.ndarray]:
batch = tree_map(lambda n: torch.tensor(n, device=batch["aatype"].device), batch, np.ndarray)
out = tensor_tree_map(lambda t: np.array(t), make_atom14_masks(batch))
return out
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/rigid_utils.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import annotations
from functools import lru_cache
from typing import Any, Callable, Dict, List, Optional, Sequence, Tuple
import numpy as np
import torch
def rot_matmul(a: torch.Tensor, b: torch.Tensor) -> torch.Tensor:
"""
Performs matrix multiplication of two rotation matrix tensors. Written out by hand to avoid AMP downcasting.
Args:
a: [*, 3, 3] left multiplicand
b: [*, 3, 3] right multiplicand
Returns:
The product ab
"""
def row_mul(i: int) -> torch.Tensor:
return torch.stack(
[
a[..., i, 0] * b[..., 0, 0] + a[..., i, 1] * b[..., 1, 0] + a[..., i, 2] * b[..., 2, 0],
a[..., i, 0] * b[..., 0, 1] + a[..., i, 1] * b[..., 1, 1] + a[..., i, 2] * b[..., 2, 1],
a[..., i, 0] * b[..., 0, 2] + a[..., i, 1] * b[..., 1, 2] + a[..., i, 2] * b[..., 2, 2],
],
dim=-1,
)
return torch.stack(
[
row_mul(0),
row_mul(1),
row_mul(2),
],
dim=-2,
)
def rot_vec_mul(r: torch.Tensor, t: torch.Tensor) -> torch.Tensor:
"""
Applies a rotation to a vector. Written out by hand to avoid transfer to avoid AMP downcasting.
Args:
r: [*, 3, 3] rotation matrices
t: [*, 3] coordinate tensors
Returns:
[*, 3] rotated coordinates
"""
x, y, z = torch.unbind(t, dim=-1)
return torch.stack(
[
r[..., 0, 0] * x + r[..., 0, 1] * y + r[..., 0, 2] * z,
r[..., 1, 0] * x + r[..., 1, 1] * y + r[..., 1, 2] * z,
r[..., 2, 0] * x + r[..., 2, 1] * y + r[..., 2, 2] * z,
],
dim=-1,
)
@lru_cache(maxsize=None)
def identity_rot_mats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
rots = torch.eye(3, dtype=dtype, device=device, requires_grad=requires_grad)
rots = rots.view(*((1,) * len(batch_dims)), 3, 3)
rots = rots.expand(*batch_dims, -1, -1)
rots = rots.contiguous()
return rots
@lru_cache(maxsize=None)
def identity_trans(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
trans = torch.zeros((*batch_dims, 3), dtype=dtype, device=device, requires_grad=requires_grad)
return trans
@lru_cache(maxsize=None)
def identity_quats(
batch_dims: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
) -> torch.Tensor:
quat = torch.zeros((*batch_dims, 4), dtype=dtype, device=device, requires_grad=requires_grad)
with torch.no_grad():
quat[..., 0] = 1
return quat
_quat_elements: List[str] = ["a", "b", "c", "d"]
_qtr_keys: List[str] = [l1 + l2 for l1 in _quat_elements for l2 in _quat_elements]
_qtr_ind_dict: Dict[str, int] = {key: ind for ind, key in enumerate(_qtr_keys)}
def _to_mat(pairs: List[Tuple[str, int]]) -> np.ndarray:
mat = np.zeros((4, 4))
for key, value in pairs:
ind = _qtr_ind_dict[key]
mat[ind // 4][ind % 4] = value
return mat
_QTR_MAT = np.zeros((4, 4, 3, 3))
_QTR_MAT[..., 0, 0] = _to_mat([("aa", 1), ("bb", 1), ("cc", -1), ("dd", -1)])
_QTR_MAT[..., 0, 1] = _to_mat([("bc", 2), ("ad", -2)])
_QTR_MAT[..., 0, 2] = _to_mat([("bd", 2), ("ac", 2)])
_QTR_MAT[..., 1, 0] = _to_mat([("bc", 2), ("ad", 2)])
_QTR_MAT[..., 1, 1] = _to_mat([("aa", 1), ("bb", -1), ("cc", 1), ("dd", -1)])
_QTR_MAT[..., 1, 2] = _to_mat([("cd", 2), ("ab", -2)])
_QTR_MAT[..., 2, 0] = _to_mat([("bd", 2), ("ac", -2)])
_QTR_MAT[..., 2, 1] = _to_mat([("cd", 2), ("ab", 2)])
_QTR_MAT[..., 2, 2] = _to_mat([("aa", 1), ("bb", -1), ("cc", -1), ("dd", 1)])
def quat_to_rot(quat: torch.Tensor) -> torch.Tensor:
"""
Converts a quaternion to a rotation matrix.
Args:
quat: [*, 4] quaternions
Returns:
[*, 3, 3] rotation matrices
"""
# [*, 4, 4]
quat = quat[..., None] * quat[..., None, :]
# [4, 4, 3, 3]
mat = _get_quat("_QTR_MAT", dtype=quat.dtype, device=quat.device)
# [*, 4, 4, 3, 3]
shaped_qtr_mat = mat.view((1,) * len(quat.shape[:-2]) + mat.shape)
quat = quat[..., None, None] * shaped_qtr_mat
# [*, 3, 3]
return torch.sum(quat, dim=(-3, -4))
def rot_to_quat(rot: torch.Tensor) -> torch.Tensor:
if rot.shape[-2:] != (3, 3):
raise ValueError("Input rotation is incorrectly shaped")
[[xx, xy, xz], [yx, yy, yz], [zx, zy, zz]] = [[rot[..., i, j] for j in range(3)] for i in range(3)]
k = [
[
xx + yy + zz,
zy - yz,
xz - zx,
yx - xy,
],
[
zy - yz,
xx - yy - zz,
xy + yx,
xz + zx,
],
[
xz - zx,
xy + yx,
yy - xx - zz,
yz + zy,
],
[
yx - xy,
xz + zx,
yz + zy,
zz - xx - yy,
],
]
_, vectors = torch.linalg.eigh((1.0 / 3.0) * torch.stack([torch.stack(t, dim=-1) for t in k], dim=-2))
return vectors[..., -1]
_QUAT_MULTIPLY = np.zeros((4, 4, 4))
_QUAT_MULTIPLY[:, :, 0] = [[1, 0, 0, 0], [0, -1, 0, 0], [0, 0, -1, 0], [0, 0, 0, -1]]
_QUAT_MULTIPLY[:, :, 1] = [[0, 1, 0, 0], [1, 0, 0, 0], [0, 0, 0, 1], [0, 0, -1, 0]]
_QUAT_MULTIPLY[:, :, 2] = [[0, 0, 1, 0], [0, 0, 0, -1], [1, 0, 0, 0], [0, 1, 0, 0]]
_QUAT_MULTIPLY[:, :, 3] = [[0, 0, 0, 1], [0, 0, 1, 0], [0, -1, 0, 0], [1, 0, 0, 0]]
_QUAT_MULTIPLY_BY_VEC = _QUAT_MULTIPLY[:, 1:, :]
_CACHED_QUATS: Dict[str, np.ndarray] = {
"_QTR_MAT": _QTR_MAT,
"_QUAT_MULTIPLY": _QUAT_MULTIPLY,
"_QUAT_MULTIPLY_BY_VEC": _QUAT_MULTIPLY_BY_VEC,
}
@lru_cache(maxsize=None)
def _get_quat(quat_key: str, dtype: torch.dtype, device: torch.device) -> torch.Tensor:
return torch.tensor(_CACHED_QUATS[quat_key], dtype=dtype, device=device)
def quat_multiply(quat1: torch.Tensor, quat2: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by another quaternion."""
mat = _get_quat("_QUAT_MULTIPLY", dtype=quat1.dtype, device=quat1.device)
reshaped_mat = mat.view((1,) * len(quat1.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat1[..., :, None, None] * quat2[..., None, :, None], dim=(-3, -2))
def quat_multiply_by_vec(quat: torch.Tensor, vec: torch.Tensor) -> torch.Tensor:
"""Multiply a quaternion by a pure-vector quaternion."""
mat = _get_quat("_QUAT_MULTIPLY_BY_VEC", dtype=quat.dtype, device=quat.device)
reshaped_mat = mat.view((1,) * len(quat.shape[:-1]) + mat.shape)
return torch.sum(reshaped_mat * quat[..., :, None, None] * vec[..., None, :, None], dim=(-3, -2))
def invert_rot_mat(rot_mat: torch.Tensor) -> torch.Tensor:
return rot_mat.transpose(-1, -2)
def invert_quat(quat: torch.Tensor) -> torch.Tensor:
quat_prime = quat.clone()
quat_prime[..., 1:] *= -1
inv = quat_prime / torch.sum(quat**2, dim=-1, keepdim=True)
return inv
class Rotation:
"""
A 3D rotation. Depending on how the object is initialized, the rotation is represented by either a rotation matrix
or a quaternion, though both formats are made available by helper functions. To simplify gradient computation, the
underlying format of the rotation cannot be changed in-place. Like Rigid, the class is designed to mimic the
behavior of a torch Tensor, almost as if each Rotation object were a tensor of rotations, in one format or another.
"""
def __init__(
self,
rot_mats: Optional[torch.Tensor] = None,
quats: Optional[torch.Tensor] = None,
normalize_quats: bool = True,
):
"""
Args:
rot_mats:
A [*, 3, 3] rotation matrix tensor. Mutually exclusive with quats
quats:
A [*, 4] quaternion. Mutually exclusive with rot_mats. If normalize_quats is not True, must be a unit
quaternion
normalize_quats:
If quats is specified, whether to normalize quats
"""
if (rot_mats is None and quats is None) or (rot_mats is not None and quats is not None):
raise ValueError("Exactly one input argument must be specified")
if (rot_mats is not None and rot_mats.shape[-2:] != (3, 3)) or (quats is not None and quats.shape[-1] != 4):
raise ValueError("Incorrectly shaped rotation matrix or quaternion")
# Force full-precision
if quats is not None:
quats = quats.to(dtype=torch.float32)
if rot_mats is not None:
rot_mats = rot_mats.to(dtype=torch.float32)
if quats is not None and normalize_quats:
quats = quats / torch.linalg.norm(quats, dim=-1, keepdim=True)
self._rot_mats = rot_mats
self._quats = quats
@staticmethod
def identity(
shape,
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rotation:
"""
Returns an identity Rotation.
Args:
shape:
The "shape" of the resulting Rotation object. See documentation for the shape property
dtype:
The torch dtype for the rotation
device:
The torch device for the new rotation
requires_grad:
Whether the underlying tensors in the new rotation object should require gradient computation
fmt:
One of "quat" or "rot_mat". Determines the underlying format of the new object's rotation
Returns:
A new identity rotation
"""
if fmt == "rot_mat":
rot_mats = identity_rot_mats(
shape,
dtype,
device,
requires_grad,
)
return Rotation(rot_mats=rot_mats, quats=None)
elif fmt == "quat":
quats = identity_quats(shape, dtype, device, requires_grad)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError(f"Invalid format: f{fmt}")
# Magic methods
def __getitem__(self, index: Any) -> Rotation:
"""
Allows torch-style indexing over the virtual shape of the rotation object. See documentation for the shape
property.
Args:
index:
A torch index. E.g. (1, 3, 2), or (slice(None,))
Returns:
The indexed rotation
"""
if type(index) != tuple:
index = (index,)
if self._rot_mats is not None:
rot_mats = self._rot_mats[index + (slice(None), slice(None))]
return Rotation(rot_mats=rot_mats)
elif self._quats is not None:
quats = self._quats[index + (slice(None),)]
return Rotation(quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __mul__(self, right: torch.Tensor) -> Rotation:
"""
Pointwise left multiplication of the rotation with a tensor. Can be used to e.g. mask the Rotation.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
if self._rot_mats is not None:
rot_mats = self._rot_mats * right[..., None, None]
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats * right[..., None]
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def __rmul__(self, left: torch.Tensor) -> Rotation:
"""
Reverse pointwise multiplication of the rotation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
# Properties
@property
def shape(self) -> torch.Size:
"""
Returns the virtual shape of the rotation object. This shape is defined as the batch dimensions of the
underlying rotation matrix or quaternion. If the Rotation was initialized with a [10, 3, 3] rotation matrix
tensor, for example, the resulting shape would be [10].
Returns:
The virtual shape of the rotation object
"""
if self._rot_mats is not None:
return self._rot_mats.shape[:-2]
elif self._quats is not None:
return self._quats.shape[:-1]
else:
raise ValueError("Both rotations are None")
@property
def dtype(self) -> torch.dtype:
"""
Returns the dtype of the underlying rotation.
Returns:
The dtype of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.dtype
elif self._quats is not None:
return self._quats.dtype
else:
raise ValueError("Both rotations are None")
@property
def device(self) -> torch.device:
"""
The device of the underlying rotation
Returns:
The device of the underlying rotation
"""
if self._rot_mats is not None:
return self._rot_mats.device
elif self._quats is not None:
return self._quats.device
else:
raise ValueError("Both rotations are None")
@property
def requires_grad(self) -> bool:
"""
Returns the requires_grad property of the underlying rotation
Returns:
The requires_grad property of the underlying tensor
"""
if self._rot_mats is not None:
return self._rot_mats.requires_grad
elif self._quats is not None:
return self._quats.requires_grad
else:
raise ValueError("Both rotations are None")
def get_rot_mats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a rotation matrix tensor.
Returns:
The rotation as a rotation matrix tensor
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return quat_to_rot(self._quats)
else:
raise ValueError("Both rotations are None")
def get_quats(self) -> torch.Tensor:
"""
Returns the underlying rotation as a quaternion tensor.
Depending on whether the Rotation was initialized with a quaternion, this function may call torch.linalg.eigh.
Returns:
The rotation as a quaternion tensor.
"""
if self._rot_mats is not None:
return rot_to_quat(self._rot_mats)
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
def get_cur_rot(self) -> torch.Tensor:
"""
Return the underlying rotation in its current form
Returns:
The stored rotation
"""
if self._rot_mats is not None:
return self._rot_mats
elif self._quats is not None:
return self._quats
else:
raise ValueError("Both rotations are None")
# Rotation functions
def compose_q_update_vec(self, q_update_vec: torch.Tensor, normalize_quats: bool = True) -> Rotation:
"""
Returns a new quaternion Rotation after updating the current object's underlying rotation with a quaternion
update, formatted as a [*, 3] tensor whose final three columns represent x, y, z such that (1, x, y, z) is the
desired (not necessarily unit) quaternion update.
Args:
q_update_vec:
A [*, 3] quaternion update tensor
normalize_quats:
Whether to normalize the output quaternion
Returns:
An updated Rotation
"""
quats = self.get_quats()
new_quats = quats + quat_multiply_by_vec(quats, q_update_vec)
return Rotation(
rot_mats=None,
quats=new_quats,
normalize_quats=normalize_quats,
)
def compose_r(self, r: Rotation) -> Rotation:
"""
Compose the rotation matrices of the current Rotation object with those of another.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
r1 = self.get_rot_mats()
r2 = r.get_rot_mats()
new_rot_mats = rot_matmul(r1, r2)
return Rotation(rot_mats=new_rot_mats, quats=None)
def compose_q(self, r: Rotation, normalize_quats: bool = True) -> Rotation:
"""
Compose the quaternions of the current Rotation object with those of another.
Depending on whether either Rotation was initialized with quaternions, this function may call
torch.linalg.eigh.
Args:
r:
An update rotation object
Returns:
An updated rotation object
"""
q1 = self.get_quats()
q2 = r.get_quats()
new_quats = quat_multiply(q1, q2)
return Rotation(rot_mats=None, quats=new_quats, normalize_quats=normalize_quats)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Apply the current Rotation as a rotation matrix to a set of 3D coordinates.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] rotated points
"""
rot_mats = self.get_rot_mats()
return rot_vec_mul(rot_mats, pts)
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
The inverse of the apply() method.
Args:
pts:
A [*, 3] set of points
Returns:
[*, 3] inverse-rotated points
"""
rot_mats = self.get_rot_mats()
inv_rot_mats = invert_rot_mat(rot_mats)
return rot_vec_mul(inv_rot_mats, pts)
def invert(self) -> Rotation:
"""
Returns the inverse of the current Rotation.
Returns:
The inverse of the current Rotation
"""
if self._rot_mats is not None:
return Rotation(rot_mats=invert_rot_mat(self._rot_mats), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=invert_quat(self._quats),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
# "Tensor" stuff
def unsqueeze(self, dim: int) -> Rotation:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shape of the Rotation object.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed Rotation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
if self._rot_mats is not None:
rot_mats = self._rot_mats.unsqueeze(dim if dim >= 0 else dim - 2)
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = self._quats.unsqueeze(dim if dim >= 0 else dim - 1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
@staticmethod
def cat(rs: Sequence[Rotation], dim: int) -> Rotation:
"""
Concatenates rotations along one of the batch dimensions. Analogous to torch.cat().
Note that the output of this operation is always a rotation matrix, regardless of the format of input
rotations.
Args:
rs:
A list of rotation objects
dim:
The dimension along which the rotations should be concatenated
Returns:
A concatenated Rotation object in rotation matrix format
"""
rot_mats = torch.cat(
[r.get_rot_mats() for r in rs],
dim=dim if dim >= 0 else dim - 2,
)
return Rotation(rot_mats=rot_mats, quats=None)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rotation:
"""
Apply a Tensor -> Tensor function to underlying rotation tensors, mapping over the rotation dimension(s). Can
be used e.g. to sum out a one-hot batch dimension.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rotation
Returns:
The transformed Rotation object
"""
if self._rot_mats is not None:
rot_mats = self._rot_mats.view(self._rot_mats.shape[:-2] + (9,))
rot_mats = torch.stack(list(map(fn, torch.unbind(rot_mats, dim=-1))), dim=-1)
rot_mats = rot_mats.view(rot_mats.shape[:-1] + (3, 3))
return Rotation(rot_mats=rot_mats, quats=None)
elif self._quats is not None:
quats = torch.stack(list(map(fn, torch.unbind(self._quats, dim=-1))), dim=-1)
return Rotation(rot_mats=None, quats=quats, normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def cuda(self) -> Rotation:
"""
Analogous to the cuda() method of torch Tensors
Returns:
A copy of the Rotation in CUDA memory
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.cuda(), quats=None)
elif self._quats is not None:
return Rotation(rot_mats=None, quats=self._quats.cuda(), normalize_quats=False)
else:
raise ValueError("Both rotations are None")
def to(self, device: Optional[torch.device], dtype: Optional[torch.dtype]) -> Rotation:
"""
Analogous to the to() method of torch Tensors
Args:
device:
A torch device
dtype:
A torch dtype
Returns:
A copy of the Rotation using the new device and dtype
"""
if self._rot_mats is not None:
return Rotation(
rot_mats=self._rot_mats.to(device=device, dtype=dtype),
quats=None,
)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.to(device=device, dtype=dtype),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
def detach(self) -> Rotation:
"""
Returns a copy of the Rotation whose underlying Tensor has been detached from its torch graph.
Returns:
A copy of the Rotation whose underlying Tensor has been detached from its torch graph
"""
if self._rot_mats is not None:
return Rotation(rot_mats=self._rot_mats.detach(), quats=None)
elif self._quats is not None:
return Rotation(
rot_mats=None,
quats=self._quats.detach(),
normalize_quats=False,
)
else:
raise ValueError("Both rotations are None")
class Rigid:
"""
A class representing a rigid transformation. Little more than a wrapper around two objects: a Rotation object and a
[*, 3] translation Designed to behave approximately like a single torch tensor with the shape of the shared batch
dimensions of its component parts.
"""
def __init__(self, rots: Optional[Rotation], trans: Optional[torch.Tensor]):
"""
Args:
rots: A [*, 3, 3] rotation tensor
trans: A corresponding [*, 3] translation tensor
"""
# (we need device, dtype, etc. from at least one input)
batch_dims, dtype, device, requires_grad = None, None, None, None
if trans is not None:
batch_dims = trans.shape[:-1]
dtype = trans.dtype
device = trans.device
requires_grad = trans.requires_grad
elif rots is not None:
batch_dims = rots.shape
dtype = rots.dtype
device = rots.device
requires_grad = rots.requires_grad
else:
raise ValueError("At least one input argument must be specified")
if rots is None:
rots = Rotation.identity(
batch_dims,
dtype,
device,
requires_grad,
)
elif trans is None:
trans = identity_trans(
batch_dims,
dtype,
device,
requires_grad,
)
assert rots is not None
assert trans is not None
if (rots.shape != trans.shape[:-1]) or (rots.device != trans.device):
raise ValueError("Rots and trans incompatible")
# Force full precision. Happens to the rotations automatically.
trans = trans.to(dtype=torch.float32)
self._rots = rots
self._trans = trans
@staticmethod
def identity(
shape: Tuple[int, ...],
dtype: Optional[torch.dtype] = None,
device: Optional[torch.device] = None,
requires_grad: bool = True,
fmt: str = "quat",
) -> Rigid:
"""
Constructs an identity transformation.
Args:
shape:
The desired shape
dtype:
The dtype of both internal tensors
device:
The device of both internal tensors
requires_grad:
Whether grad should be enabled for the internal tensors
Returns:
The identity transformation
"""
return Rigid(
Rotation.identity(shape, dtype, device, requires_grad, fmt=fmt),
identity_trans(shape, dtype, device, requires_grad),
)
def __getitem__(self, index: Any) -> Rigid:
"""
Indexes the affine transformation with PyTorch-style indices. The index is applied to the shared dimensions of
both the rotation and the translation.
E.g.::
r = Rotation(rot_mats=torch.rand(10, 10, 3, 3), quats=None) t = Rigid(r, torch.rand(10, 10, 3)) indexed =
t[3, 4:6] assert(indexed.shape == (2,)) assert(indexed.get_rots().shape == (2,))
assert(indexed.get_trans().shape == (2, 3))
Args:
index: A standard torch tensor index. E.g. 8, (10, None, 3),
or (3, slice(0, 1, None))
Returns:
The indexed tensor
"""
if type(index) != tuple:
index = (index,)
return Rigid(
self._rots[index],
self._trans[index + (slice(None),)],
)
def __mul__(self, right: torch.Tensor) -> Rigid:
"""
Pointwise left multiplication of the transformation with a tensor. Can be used to e.g. mask the Rigid.
Args:
right:
The tensor multiplicand
Returns:
The product
"""
if not (isinstance(right, torch.Tensor)):
raise TypeError("The other multiplicand must be a Tensor")
new_rots = self._rots * right
new_trans = self._trans * right[..., None]
return Rigid(new_rots, new_trans)
def __rmul__(self, left: torch.Tensor) -> Rigid:
"""
Reverse pointwise multiplication of the transformation with a tensor.
Args:
left:
The left multiplicand
Returns:
The product
"""
return self.__mul__(left)
@property
def shape(self) -> torch.Size:
"""
Returns the shape of the shared dimensions of the rotation and the translation.
Returns:
The shape of the transformation
"""
return self._trans.shape[:-1]
@property
def device(self) -> torch.device:
"""
Returns the device on which the Rigid's tensors are located.
Returns:
The device on which the Rigid's tensors are located
"""
return self._trans.device
def get_rots(self) -> Rotation:
"""
Getter for the rotation.
Returns:
The rotation object
"""
return self._rots
def get_trans(self) -> torch.Tensor:
"""
Getter for the translation.
Returns:
The stored translation
"""
return self._trans
def compose_q_update_vec(self, q_update_vec: torch.Tensor) -> Rigid:
"""
Composes the transformation with a quaternion update vector of shape [*, 6], where the final 6 columns
represent the x, y, and z values of a quaternion of form (1, x, y, z) followed by a 3D translation.
Args:
q_vec: The quaternion update vector.
Returns:
The composed transformation.
"""
q_vec, t_vec = q_update_vec[..., :3], q_update_vec[..., 3:]
new_rots = self._rots.compose_q_update_vec(q_vec)
trans_update = self._rots.apply(t_vec)
new_translation = self._trans + trans_update
return Rigid(new_rots, new_translation)
def compose(self, r: Rigid) -> Rigid:
"""
Composes the current rigid object with another.
Args:
r:
Another Rigid object
Returns:
The composition of the two transformations
"""
new_rot = self._rots.compose_r(r._rots)
new_trans = self._rots.apply(r._trans) + self._trans
return Rigid(new_rot, new_trans)
def apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor.
Returns:
The transformed points.
"""
rotated = self._rots.apply(pts)
return rotated + self._trans
def invert_apply(self, pts: torch.Tensor) -> torch.Tensor:
"""
Applies the inverse of the transformation to a coordinate tensor.
Args:
pts: A [*, 3] coordinate tensor
Returns:
The transformed points.
"""
pts = pts - self._trans
return self._rots.invert_apply(pts)
def invert(self) -> Rigid:
"""
Inverts the transformation.
Returns:
The inverse transformation.
"""
rot_inv = self._rots.invert()
trn_inv = rot_inv.apply(self._trans)
return Rigid(rot_inv, -1 * trn_inv)
def map_tensor_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Apply a Tensor -> Tensor function to underlying translation and rotation tensors, mapping over the
translation/rotation dimensions respectively.
Args:
fn:
A Tensor -> Tensor function to be mapped over the Rigid
Returns:
The transformed Rigid object
"""
new_rots = self._rots.map_tensor_fn(fn)
new_trans = torch.stack(list(map(fn, torch.unbind(self._trans, dim=-1))), dim=-1)
return Rigid(new_rots, new_trans)
def to_tensor_4x4(self) -> torch.Tensor:
"""
Converts a transformation to a homogenous transformation tensor.
Returns:
A [*, 4, 4] homogenous transformation tensor
"""
tensor = self._trans.new_zeros((*self.shape, 4, 4))
tensor[..., :3, :3] = self._rots.get_rot_mats()
tensor[..., :3, 3] = self._trans
tensor[..., 3, 3] = 1
return tensor
@staticmethod
def from_tensor_4x4(t: torch.Tensor) -> Rigid:
"""
Constructs a transformation from a homogenous transformation tensor.
Args:
t: [*, 4, 4] homogenous transformation tensor
Returns:
T object with shape [*]
"""
if t.shape[-2:] != (4, 4):
raise ValueError("Incorrectly shaped input tensor")
rots = Rotation(rot_mats=t[..., :3, :3], quats=None)
trans = t[..., :3, 3]
return Rigid(rots, trans)
def to_tensor_7(self) -> torch.Tensor:
"""
Converts a transformation to a tensor with 7 final columns, four for the quaternion followed by three for the
translation.
Returns:
A [*, 7] tensor representation of the transformation
"""
tensor = self._trans.new_zeros((*self.shape, 7))
tensor[..., :4] = self._rots.get_quats()
tensor[..., 4:] = self._trans
return tensor
@staticmethod
def from_tensor_7(t: torch.Tensor, normalize_quats: bool = False) -> Rigid:
if t.shape[-1] != 7:
raise ValueError("Incorrectly shaped input tensor")
quats, trans = t[..., :4], t[..., 4:]
rots = Rotation(rot_mats=None, quats=quats, normalize_quats=normalize_quats)
return Rigid(rots, trans)
@staticmethod
def from_3_points(
p_neg_x_axis: torch.Tensor, origin: torch.Tensor, p_xy_plane: torch.Tensor, eps: float = 1e-8
) -> Rigid:
"""
Implements algorithm 21. Constructs transformations from sets of 3 points using the Gram-Schmidt algorithm.
Args:
p_neg_x_axis: [*, 3] coordinates
origin: [*, 3] coordinates used as frame origins
p_xy_plane: [*, 3] coordinates
eps: Small epsilon value
Returns:
A transformation object of shape [*]
"""
p_neg_x_axis_unbound = torch.unbind(p_neg_x_axis, dim=-1)
origin_unbound = torch.unbind(origin, dim=-1)
p_xy_plane_unbound = torch.unbind(p_xy_plane, dim=-1)
e0 = [c1 - c2 for c1, c2 in zip(origin_unbound, p_neg_x_axis_unbound)]
e1 = [c1 - c2 for c1, c2 in zip(p_xy_plane_unbound, origin_unbound)]
denom = torch.sqrt(sum(c * c for c in e0) + eps * torch.ones_like(e0[0]))
e0 = [c / denom for c in e0]
dot = sum((c1 * c2 for c1, c2 in zip(e0, e1)))
e1 = [c2 - c1 * dot for c1, c2 in zip(e0, e1)]
denom = torch.sqrt(sum((c * c for c in e1)) + eps * torch.ones_like(e1[0]))
e1 = [c / denom for c in e1]
e2 = [
e0[1] * e1[2] - e0[2] * e1[1],
e0[2] * e1[0] - e0[0] * e1[2],
e0[0] * e1[1] - e0[1] * e1[0],
]
rots = torch.stack([c for tup in zip(e0, e1, e2) for c in tup], dim=-1)
rots = rots.reshape(rots.shape[:-1] + (3, 3))
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, torch.stack(origin_unbound, dim=-1))
def unsqueeze(self, dim: int) -> Rigid:
"""
Analogous to torch.unsqueeze. The dimension is relative to the shared dimensions of the rotation/translation.
Args:
dim: A positive or negative dimension index.
Returns:
The unsqueezed transformation.
"""
if dim >= len(self.shape):
raise ValueError("Invalid dimension")
rots = self._rots.unsqueeze(dim)
trans = self._trans.unsqueeze(dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
@staticmethod
def cat(ts: Sequence[Rigid], dim: int) -> Rigid:
"""
Concatenates transformations along a new dimension.
Args:
ts:
A list of T objects
dim:
The dimension along which the transformations should be concatenated
Returns:
A concatenated transformation object
"""
rots = Rotation.cat([t._rots for t in ts], dim)
trans = torch.cat([t._trans for t in ts], dim=dim if dim >= 0 else dim - 1)
return Rigid(rots, trans)
def apply_rot_fn(self, fn: Callable[[Rotation], Rotation]) -> Rigid:
"""
Applies a Rotation -> Rotation function to the stored rotation object.
Args:
fn: A function of type Rotation -> Rotation
Returns:
A transformation object with a transformed rotation.
"""
return Rigid(fn(self._rots), self._trans)
def apply_trans_fn(self, fn: Callable[[torch.Tensor], torch.Tensor]) -> Rigid:
"""
Applies a Tensor -> Tensor function to the stored translation.
Args:
fn:
A function of type Tensor -> Tensor to be applied to the translation
Returns:
A transformation object with a transformed translation.
"""
return Rigid(self._rots, fn(self._trans))
def scale_translation(self, trans_scale_factor: float) -> Rigid:
"""
Scales the translation by a constant factor.
Args:
trans_scale_factor:
The constant factor
Returns:
A transformation object with a scaled translation.
"""
return self.apply_trans_fn(lambda t: t * trans_scale_factor)
def stop_rot_gradient(self) -> Rigid:
"""
Detaches the underlying rotation object
Returns:
A transformation object with detached rotations
"""
return self.apply_rot_fn(lambda r: r.detach())
@staticmethod
def make_transform_from_reference(
n_xyz: torch.Tensor, ca_xyz: torch.Tensor, c_xyz: torch.Tensor, eps: float = 1e-20
) -> Rigid:
"""
Returns a transformation object from reference coordinates.
Note that this method does not take care of symmetries. If you provide the atom positions in the non-standard
way, the N atom will end up not at [-0.527250, 1.359329, 0.0] but instead at [-0.527250, -1.359329, 0.0]. You
need to take care of such cases in your code.
Args:
n_xyz: A [*, 3] tensor of nitrogen xyz coordinates.
ca_xyz: A [*, 3] tensor of carbon alpha xyz coordinates.
c_xyz: A [*, 3] tensor of carbon xyz coordinates.
Returns:
A transformation object. After applying the translation and rotation to the reference backbone, the
coordinates will approximately equal to the input coordinates.
"""
translation = -1 * ca_xyz
n_xyz = n_xyz + translation
c_xyz = c_xyz + translation
c_x, c_y, c_z = [c_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + c_x**2 + c_y**2)
sin_c1 = -c_y / norm
cos_c1 = c_x / norm
c1_rots = sin_c1.new_zeros((*sin_c1.shape, 3, 3))
c1_rots[..., 0, 0] = cos_c1
c1_rots[..., 0, 1] = -1 * sin_c1
c1_rots[..., 1, 0] = sin_c1
c1_rots[..., 1, 1] = cos_c1
c1_rots[..., 2, 2] = 1
norm = torch.sqrt(eps + c_x**2 + c_y**2 + c_z**2)
sin_c2 = c_z / norm
cos_c2 = torch.sqrt(c_x**2 + c_y**2) / norm
c2_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
c2_rots[..., 0, 0] = cos_c2
c2_rots[..., 0, 2] = sin_c2
c2_rots[..., 1, 1] = 1
c2_rots[..., 2, 0] = -1 * sin_c2
c2_rots[..., 2, 2] = cos_c2
c_rots = rot_matmul(c2_rots, c1_rots)
n_xyz = rot_vec_mul(c_rots, n_xyz)
_, n_y, n_z = [n_xyz[..., i] for i in range(3)]
norm = torch.sqrt(eps + n_y**2 + n_z**2)
sin_n = -n_z / norm
cos_n = n_y / norm
n_rots = sin_c2.new_zeros((*sin_c2.shape, 3, 3))
n_rots[..., 0, 0] = 1
n_rots[..., 1, 1] = cos_n
n_rots[..., 1, 2] = -1 * sin_n
n_rots[..., 2, 1] = sin_n
n_rots[..., 2, 2] = cos_n
rots = rot_matmul(n_rots, c_rots)
rots = rots.transpose(-1, -2)
translation = -1 * translation
rot_obj = Rotation(rot_mats=rots, quats=None)
return Rigid(rot_obj, translation)
def cuda(self) -> Rigid:
"""
Moves the transformation object to GPU memory
Returns:
A version of the transformation on GPU
"""
return Rigid(self._rots.cuda(), self._trans.cuda())
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|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/__init__.py
|
from .chunk_utils import chunk_layer
from .data_transforms import make_atom14_masks
from .feats import atom14_to_atom37, frames_and_literature_positions_to_atom14_pos, torsion_angles_to_frames
from .loss import compute_predicted_aligned_error, compute_tm
from .protein import Protein as OFProtein
from .protein import to_pdb
from .rigid_utils import Rigid, Rotation
from .tensor_utils import dict_multimap, flatten_final_dims, permute_final_dims
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/feats.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict, Tuple, overload
import torch
import torch.types
from torch import nn
from . import residue_constants as rc
from .rigid_utils import Rigid, Rotation
from .tensor_utils import batched_gather
@overload
def pseudo_beta_fn(aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: None) -> torch.Tensor:
...
@overload
def pseudo_beta_fn(
aatype: torch.Tensor, all_atom_positions: torch.Tensor, all_atom_masks: torch.Tensor
) -> Tuple[torch.Tensor, torch.Tensor]:
...
def pseudo_beta_fn(aatype, all_atom_positions, all_atom_masks):
is_gly = aatype == rc.restype_order["G"]
ca_idx = rc.atom_order["CA"]
cb_idx = rc.atom_order["CB"]
pseudo_beta = torch.where(
is_gly[..., None].expand(*((-1,) * len(is_gly.shape)), 3),
all_atom_positions[..., ca_idx, :],
all_atom_positions[..., cb_idx, :],
)
if all_atom_masks is not None:
pseudo_beta_mask = torch.where(
is_gly,
all_atom_masks[..., ca_idx],
all_atom_masks[..., cb_idx],
)
return pseudo_beta, pseudo_beta_mask
else:
return pseudo_beta
def atom14_to_atom37(atom14: torch.Tensor, batch: Dict[str, torch.Tensor]) -> torch.Tensor:
atom37_data = batched_gather(
atom14,
batch["residx_atom37_to_atom14"],
dim=-2,
no_batch_dims=len(atom14.shape[:-2]),
)
atom37_data = atom37_data * batch["atom37_atom_exists"][..., None]
return atom37_data
def build_template_angle_feat(template_feats: Dict[str, torch.Tensor]) -> torch.Tensor:
template_aatype = template_feats["template_aatype"]
torsion_angles_sin_cos = template_feats["template_torsion_angles_sin_cos"]
alt_torsion_angles_sin_cos = template_feats["template_alt_torsion_angles_sin_cos"]
torsion_angles_mask = template_feats["template_torsion_angles_mask"]
template_angle_feat = torch.cat(
[
nn.functional.one_hot(template_aatype, 22),
torsion_angles_sin_cos.reshape(*torsion_angles_sin_cos.shape[:-2], 14),
alt_torsion_angles_sin_cos.reshape(*alt_torsion_angles_sin_cos.shape[:-2], 14),
torsion_angles_mask,
],
dim=-1,
)
return template_angle_feat
def build_template_pair_feat(
batch: Dict[str, torch.Tensor],
min_bin: torch.types.Number,
max_bin: torch.types.Number,
no_bins: int,
use_unit_vector: bool = False,
eps: float = 1e-20,
inf: float = 1e8,
) -> torch.Tensor:
template_mask = batch["template_pseudo_beta_mask"]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
# Compute distogram (this seems to differ slightly from Alg. 5)
tpb = batch["template_pseudo_beta"]
dgram = torch.sum((tpb[..., None, :] - tpb[..., None, :, :]) ** 2, dim=-1, keepdim=True)
lower = torch.linspace(min_bin, max_bin, no_bins, device=tpb.device) ** 2
upper = torch.cat([lower[1:], lower.new_tensor([inf])], dim=-1)
dgram = ((dgram > lower) * (dgram < upper)).type(dgram.dtype)
to_concat = [dgram, template_mask_2d[..., None]]
aatype_one_hot: torch.LongTensor = nn.functional.one_hot(
batch["template_aatype"],
rc.restype_num + 2,
)
n_res = batch["template_aatype"].shape[-1]
to_concat.append(aatype_one_hot[..., None, :, :].expand(*aatype_one_hot.shape[:-2], n_res, -1, -1))
to_concat.append(aatype_one_hot[..., None, :].expand(*aatype_one_hot.shape[:-2], -1, n_res, -1))
n, ca, c = [rc.atom_order[a] for a in ["N", "CA", "C"]]
rigids = Rigid.make_transform_from_reference(
n_xyz=batch["template_all_atom_positions"][..., n, :],
ca_xyz=batch["template_all_atom_positions"][..., ca, :],
c_xyz=batch["template_all_atom_positions"][..., c, :],
eps=eps,
)
points = rigids.get_trans()[..., None, :, :]
rigid_vec = rigids[..., None].invert_apply(points)
inv_distance_scalar = torch.rsqrt(eps + torch.sum(rigid_vec**2, dim=-1))
t_aa_masks = batch["template_all_atom_mask"]
template_mask = t_aa_masks[..., n] * t_aa_masks[..., ca] * t_aa_masks[..., c]
template_mask_2d = template_mask[..., None] * template_mask[..., None, :]
inv_distance_scalar = inv_distance_scalar * template_mask_2d
unit_vector = rigid_vec * inv_distance_scalar[..., None]
if not use_unit_vector:
unit_vector = unit_vector * 0.0
to_concat.extend(torch.unbind(unit_vector[..., None, :], dim=-1))
to_concat.append(template_mask_2d[..., None])
act = torch.cat(to_concat, dim=-1)
act = act * template_mask_2d[..., None]
return act
def build_extra_msa_feat(batch: Dict[str, torch.Tensor]) -> torch.Tensor:
msa_1hot: torch.LongTensor = nn.functional.one_hot(batch["extra_msa"], 23)
msa_feat = [
msa_1hot,
batch["extra_has_deletion"].unsqueeze(-1),
batch["extra_deletion_value"].unsqueeze(-1),
]
return torch.cat(msa_feat, dim=-1)
def torsion_angles_to_frames(
r: Rigid,
alpha: torch.Tensor,
aatype: torch.Tensor,
rrgdf: torch.Tensor,
) -> Rigid:
# [*, N, 8, 4, 4]
default_4x4 = rrgdf[aatype, ...]
# [*, N, 8] transformations, i.e.
# One [*, N, 8, 3, 3] rotation matrix and
# One [*, N, 8, 3] translation matrix
default_r = r.from_tensor_4x4(default_4x4)
bb_rot = alpha.new_zeros((*((1,) * len(alpha.shape[:-1])), 2))
bb_rot[..., 1] = 1
# [*, N, 8, 2]
alpha = torch.cat([bb_rot.expand(*alpha.shape[:-2], -1, -1), alpha], dim=-2)
# [*, N, 8, 3, 3]
# Produces rotation matrices of the form:
# [
# [1, 0 , 0 ],
# [0, a_2,-a_1],
# [0, a_1, a_2]
# ]
# This follows the original code rather than the supplement, which uses
# different indices.
all_rots = alpha.new_zeros(default_r.get_rots().get_rot_mats().shape)
all_rots[..., 0, 0] = 1
all_rots[..., 1, 1] = alpha[..., 1]
all_rots[..., 1, 2] = -alpha[..., 0]
all_rots[..., 2, 1:] = alpha
all_frames = default_r.compose(Rigid(Rotation(rot_mats=all_rots), None))
chi2_frame_to_frame = all_frames[..., 5]
chi3_frame_to_frame = all_frames[..., 6]
chi4_frame_to_frame = all_frames[..., 7]
chi1_frame_to_bb = all_frames[..., 4]
chi2_frame_to_bb = chi1_frame_to_bb.compose(chi2_frame_to_frame)
chi3_frame_to_bb = chi2_frame_to_bb.compose(chi3_frame_to_frame)
chi4_frame_to_bb = chi3_frame_to_bb.compose(chi4_frame_to_frame)
all_frames_to_bb = Rigid.cat(
[
all_frames[..., :5],
chi2_frame_to_bb.unsqueeze(-1),
chi3_frame_to_bb.unsqueeze(-1),
chi4_frame_to_bb.unsqueeze(-1),
],
dim=-1,
)
all_frames_to_global = r[..., None].compose(all_frames_to_bb)
return all_frames_to_global
def frames_and_literature_positions_to_atom14_pos(
r: Rigid,
aatype: torch.Tensor,
default_frames: torch.Tensor,
group_idx: torch.Tensor,
atom_mask: torch.Tensor,
lit_positions: torch.Tensor,
) -> torch.Tensor:
# [*, N, 14]
group_mask = group_idx[aatype, ...]
# [*, N, 14, 8]
group_mask_one_hot: torch.LongTensor = nn.functional.one_hot(
group_mask,
num_classes=default_frames.shape[-3],
)
# [*, N, 14, 8]
t_atoms_to_global = r[..., None, :] * group_mask_one_hot
# [*, N, 14]
t_atoms_to_global = t_atoms_to_global.map_tensor_fn(lambda x: torch.sum(x, dim=-1))
# [*, N, 14, 1]
atom_mask = atom_mask[aatype, ...].unsqueeze(-1)
# [*, N, 14, 3]
lit_positions = lit_positions[aatype, ...]
pred_positions = t_atoms_to_global.apply(lit_positions)
pred_positions = pred_positions * atom_mask
return pred_positions
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/tensor_utils.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from functools import partial
from typing import Any, Callable, Dict, List, Type, TypeVar, Union, overload
import torch
import torch.nn as nn
import torch.types
def add(m1: torch.Tensor, m2: torch.Tensor, inplace: bool) -> torch.Tensor:
# The first operation in a checkpoint can't be in-place, but it's
# nice to have in-place addition during inference. Thus...
if not inplace:
m1 = m1 + m2
else:
m1 += m2
return m1
def permute_final_dims(tensor: torch.Tensor, inds: List[int]) -> torch.Tensor:
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds])
def flatten_final_dims(t: torch.Tensor, no_dims: int) -> torch.Tensor:
return t.reshape(t.shape[:-no_dims] + (-1,))
def masked_mean(mask: torch.Tensor, value: torch.Tensor, dim: int, eps: float = 1e-4) -> torch.Tensor:
mask = mask.expand(*value.shape)
return torch.sum(mask * value, dim=dim) / (eps + torch.sum(mask, dim=dim))
def pts_to_distogram(
pts: torch.Tensor, min_bin: torch.types.Number = 2.3125, max_bin: torch.types.Number = 21.6875, no_bins: int = 64
) -> torch.Tensor:
boundaries = torch.linspace(min_bin, max_bin, no_bins - 1, device=pts.device)
dists = torch.sqrt(torch.sum((pts.unsqueeze(-2) - pts.unsqueeze(-3)) ** 2, dim=-1))
return torch.bucketize(dists, boundaries)
def dict_multimap(fn: Callable[[list], Any], dicts: List[dict]) -> dict:
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if isinstance(v, dict):
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict
def one_hot(x: torch.Tensor, v_bins: torch.Tensor) -> torch.Tensor:
reshaped_bins = v_bins.view(((1,) * len(x.shape)) + (len(v_bins),))
diffs = x[..., None] - reshaped_bins
am = torch.argmin(torch.abs(diffs), dim=-1)
return nn.functional.one_hot(am, num_classes=len(v_bins)).float()
def batched_gather(data: torch.Tensor, inds: torch.Tensor, dim: int = 0, no_batch_dims: int = 0) -> torch.Tensor:
ranges: List[Union[slice, torch.Tensor]] = []
for i, s in enumerate(data.shape[:no_batch_dims]):
r = torch.arange(s)
r = r.view(*(*((1,) * i), -1, *((1,) * (len(inds.shape) - i - 1))))
ranges.append(r)
remaining_dims: List[Union[slice, torch.Tensor]] = [slice(None) for _ in range(len(data.shape) - no_batch_dims)]
remaining_dims[dim - no_batch_dims if dim >= 0 else dim] = inds
ranges.extend(remaining_dims)
# Matt note: Editing this to get around the behaviour of using a list as an array index changing
# in recent Numpy versions
return data[tuple(ranges)]
T = TypeVar("T")
# With tree_map, a poor man's JAX tree_map
def dict_map(
fn: Callable[[T], Any], dic: Dict[Any, Union[dict, list, tuple, T]], leaf_type: Type[T]
) -> Dict[Any, Union[dict, list, tuple, Any]]:
new_dict: Dict[Any, Union[dict, list, tuple, Any]] = {}
for k, v in dic.items():
if isinstance(v, dict):
new_dict[k] = dict_map(fn, v, leaf_type)
else:
new_dict[k] = tree_map(fn, v, leaf_type)
return new_dict
@overload
def tree_map(fn: Callable[[T], Any], tree: T, leaf_type: Type[T]) -> Any:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: dict, leaf_type: Type[T]) -> dict:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: list, leaf_type: Type[T]) -> list:
...
@overload
def tree_map(fn: Callable[[T], Any], tree: tuple, leaf_type: Type[T]) -> tuple:
...
def tree_map(fn, tree, leaf_type):
if isinstance(tree, dict):
return dict_map(fn, tree, leaf_type)
elif isinstance(tree, list):
return [tree_map(fn, x, leaf_type) for x in tree]
elif isinstance(tree, tuple):
return tuple(tree_map(fn, x, leaf_type) for x in tree)
elif isinstance(tree, leaf_type):
return fn(tree)
else:
print(type(tree))
raise ValueError("Not supported")
tensor_tree_map = partial(tree_map, leaf_type=torch.Tensor)
| 0
|
mavonic_private_repos/transformers/src/transformers/models/esm
|
mavonic_private_repos/transformers/src/transformers/models/esm/openfold_utils/protein.py
|
# Copyright 2021 AlQuraishi Laboratory
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Protein data type."""
import dataclasses
import re
import string
from typing import Any, Dict, Iterator, List, Mapping, Optional, Sequence, Tuple
import numpy as np
from . import residue_constants
FeatureDict = Mapping[str, np.ndarray]
ModelOutput = Mapping[str, Any] # Is a nested dict.
PICO_TO_ANGSTROM = 0.01
@dataclasses.dataclass(frozen=True)
class Protein:
"""Protein structure representation."""
# Cartesian coordinates of atoms in angstroms. The atom types correspond to
# residue_constants.atom_types, i.e. the first three are N, CA, CB.
atom_positions: np.ndarray # [num_res, num_atom_type, 3]
# Amino-acid type for each residue represented as an integer between 0 and
# 20, where 20 is 'X'.
aatype: np.ndarray # [num_res]
# Binary float mask to indicate presence of a particular atom. 1.0 if an atom
# is present and 0.0 if not. This should be used for loss masking.
atom_mask: np.ndarray # [num_res, num_atom_type]
# Residue index as used in PDB. It is not necessarily continuous or 0-indexed.
residue_index: np.ndarray # [num_res]
# B-factors, or temperature factors, of each residue (in sq. angstroms units),
# representing the displacement of the residue from its ground truth mean
# value.
b_factors: np.ndarray # [num_res, num_atom_type]
# Chain indices for multi-chain predictions
chain_index: Optional[np.ndarray] = None
# Optional remark about the protein. Included as a comment in output PDB
# files
remark: Optional[str] = None
# Templates used to generate this protein (prediction-only)
parents: Optional[Sequence[str]] = None
# Chain corresponding to each parent
parents_chain_index: Optional[Sequence[int]] = None
def from_proteinnet_string(proteinnet_str: str) -> Protein:
tag_re = r"(\[[A-Z]+\]\n)"
tags: List[str] = [tag.strip() for tag in re.split(tag_re, proteinnet_str) if len(tag) > 0]
groups: Iterator[Tuple[str, List[str]]] = zip(tags[0::2], [l.split("\n") for l in tags[1::2]])
atoms: List[str] = ["N", "CA", "C"]
aatype = None
atom_positions = None
atom_mask = None
for g in groups:
if "[PRIMARY]" == g[0]:
seq = g[1][0].strip()
for i in range(len(seq)):
if seq[i] not in residue_constants.restypes:
seq[i] = "X" # FIXME: strings are immutable
aatype = np.array(
[residue_constants.restype_order.get(res_symbol, residue_constants.restype_num) for res_symbol in seq]
)
elif "[TERTIARY]" == g[0]:
tertiary: List[List[float]] = []
for axis in range(3):
tertiary.append(list(map(float, g[1][axis].split())))
tertiary_np = np.array(tertiary)
atom_positions = np.zeros((len(tertiary[0]) // 3, residue_constants.atom_type_num, 3)).astype(np.float32)
for i, atom in enumerate(atoms):
atom_positions[:, residue_constants.atom_order[atom], :] = np.transpose(tertiary_np[:, i::3])
atom_positions *= PICO_TO_ANGSTROM
elif "[MASK]" == g[0]:
mask = np.array(list(map({"-": 0, "+": 1}.get, g[1][0].strip())))
atom_mask = np.zeros(
(
len(mask),
residue_constants.atom_type_num,
)
).astype(np.float32)
for i, atom in enumerate(atoms):
atom_mask[:, residue_constants.atom_order[atom]] = 1
atom_mask *= mask[..., None]
assert aatype is not None
return Protein(
atom_positions=atom_positions,
atom_mask=atom_mask,
aatype=aatype,
residue_index=np.arange(len(aatype)),
b_factors=None,
)
def get_pdb_headers(prot: Protein, chain_id: int = 0) -> List[str]:
pdb_headers: List[str] = []
remark = prot.remark
if remark is not None:
pdb_headers.append(f"REMARK {remark}")
parents = prot.parents
parents_chain_index = prot.parents_chain_index
if parents is not None and parents_chain_index is not None:
parents = [p for i, p in zip(parents_chain_index, parents) if i == chain_id]
if parents is None or len(parents) == 0:
parents = ["N/A"]
pdb_headers.append(f"PARENT {' '.join(parents)}")
return pdb_headers
def add_pdb_headers(prot: Protein, pdb_str: str) -> str:
"""Add pdb headers to an existing PDB string. Useful during multi-chain
recycling
"""
out_pdb_lines: List[str] = []
lines = pdb_str.split("\n")
remark = prot.remark
if remark is not None:
out_pdb_lines.append(f"REMARK {remark}")
parents_per_chain: List[List[str]]
if prot.parents is not None and len(prot.parents) > 0:
parents_per_chain = []
if prot.parents_chain_index is not None:
parent_dict: Dict[str, List[str]] = {}
for p, i in zip(prot.parents, prot.parents_chain_index):
parent_dict.setdefault(str(i), [])
parent_dict[str(i)].append(p)
max_idx = max([int(chain_idx) for chain_idx in parent_dict])
for i in range(max_idx + 1):
chain_parents = parent_dict.get(str(i), ["N/A"])
parents_per_chain.append(chain_parents)
else:
parents_per_chain.append(list(prot.parents))
else:
parents_per_chain = [["N/A"]]
def make_parent_line(p: Sequence[str]) -> str:
return f"PARENT {' '.join(p)}"
out_pdb_lines.append(make_parent_line(parents_per_chain[0]))
chain_counter = 0
for i, l in enumerate(lines):
if "PARENT" not in l and "REMARK" not in l:
out_pdb_lines.append(l)
if "TER" in l and "END" not in lines[i + 1]:
chain_counter += 1
if not chain_counter >= len(parents_per_chain):
chain_parents = parents_per_chain[chain_counter]
else:
chain_parents = ["N/A"]
out_pdb_lines.append(make_parent_line(chain_parents))
return "\n".join(out_pdb_lines)
def to_pdb(prot: Protein) -> str:
"""Converts a `Protein` instance to a PDB string.
Args:
prot: The protein to convert to PDB.
Returns:
PDB string.
"""
restypes = residue_constants.restypes + ["X"]
def res_1to3(r: int) -> str:
return residue_constants.restype_1to3.get(restypes[r], "UNK")
atom_types = residue_constants.atom_types
pdb_lines: List[str] = []
atom_mask = prot.atom_mask
aatype = prot.aatype
atom_positions = prot.atom_positions
residue_index = prot.residue_index.astype(np.int32)
b_factors = prot.b_factors
chain_index = prot.chain_index
if np.any(aatype > residue_constants.restype_num):
raise ValueError("Invalid aatypes.")
headers = get_pdb_headers(prot)
if len(headers) > 0:
pdb_lines.extend(headers)
n = aatype.shape[0]
atom_index = 1
prev_chain_index = 0
chain_tags = string.ascii_uppercase
chain_tag = None
# Add all atom sites.
for i in range(n):
res_name_3 = res_1to3(aatype[i])
for atom_name, pos, mask, b_factor in zip(atom_types, atom_positions[i], atom_mask[i], b_factors[i]):
if mask < 0.5:
continue
record_type = "ATOM"
name = atom_name if len(atom_name) == 4 else f" {atom_name}"
alt_loc = ""
insertion_code = ""
occupancy = 1.00
element = atom_name[0] # Protein supports only C, N, O, S, this works.
charge = ""
chain_tag = "A"
if chain_index is not None:
chain_tag = chain_tags[chain_index[i]]
# PDB is a columnar format, every space matters here!
atom_line = (
f"{record_type:<6}{atom_index:>5} {name:<4}{alt_loc:>1}"
f"{res_name_3:>3} {chain_tag:>1}"
f"{residue_index[i]:>4}{insertion_code:>1} "
f"{pos[0]:>8.3f}{pos[1]:>8.3f}{pos[2]:>8.3f}"
f"{occupancy:>6.2f}{b_factor:>6.2f} "
f"{element:>2}{charge:>2}"
)
pdb_lines.append(atom_line)
atom_index += 1
should_terminate = i == n - 1
if chain_index is not None:
if i != n - 1 and chain_index[i + 1] != prev_chain_index:
should_terminate = True
prev_chain_index = chain_index[i + 1]
if should_terminate:
# Close the chain.
chain_end = "TER"
chain_termination_line = (
f"{chain_end:<6}{atom_index:>5} {res_1to3(aatype[i]):>3} {chain_tag:>1}{residue_index[i]:>4}"
)
pdb_lines.append(chain_termination_line)
atom_index += 1
if i != n - 1:
# "prev" is a misnomer here. This happens at the beginning of
# each new chain.
pdb_lines.extend(get_pdb_headers(prot, prev_chain_index))
pdb_lines.append("END")
pdb_lines.append("")
return "\n".join(pdb_lines)
def ideal_atom_mask(prot: Protein) -> np.ndarray:
"""Computes an ideal atom mask.
`Protein.atom_mask` typically is defined according to the atoms that are reported in the PDB. This function
computes a mask according to heavy atoms that should be present in the given sequence of amino acids.
Args:
prot: `Protein` whose fields are `numpy.ndarray` objects.
Returns:
An ideal atom mask.
"""
return residue_constants.STANDARD_ATOM_MASK[prot.aatype]
def from_prediction(
features: FeatureDict,
result: ModelOutput,
b_factors: Optional[np.ndarray] = None,
chain_index: Optional[np.ndarray] = None,
remark: Optional[str] = None,
parents: Optional[Sequence[str]] = None,
parents_chain_index: Optional[Sequence[int]] = None,
) -> Protein:
"""Assembles a protein from a prediction.
Args:
features: Dictionary holding model inputs.
result: Dictionary holding model outputs.
b_factors: (Optional) B-factors to use for the protein.
chain_index: (Optional) Chain indices for multi-chain predictions
remark: (Optional) Remark about the prediction
parents: (Optional) List of template names
Returns:
A protein instance.
"""
return Protein(
aatype=features["aatype"],
atom_positions=result["final_atom_positions"],
atom_mask=result["final_atom_mask"],
residue_index=features["residue_index"] + 1,
b_factors=b_factors if b_factors is not None else np.zeros_like(result["final_atom_mask"]),
chain_index=chain_index,
remark=remark,
parents=parents,
parents_chain_index=parents_chain_index,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/convert_dpt_swinv2_to_hf.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DPT 3.1 checkpoints from the MiDaS repository. URL: https://github.com/isl-org/MiDaS"""
import argparse
from pathlib import Path
import requests
import torch
from PIL import Image
from transformers import DPTConfig, DPTForDepthEstimation, DPTImageProcessor, Swinv2Config
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def get_dpt_config(model_name):
if "tiny" in model_name:
embed_dim = 96
depths = (2, 2, 6, 2)
num_heads = (3, 6, 12, 24)
window_size = 16
# note: for Swinv2-tiny authors used the window_size = 16 variant
# as seen here: https://github.com/isl-org/MiDaS/blob/bdc4ed64c095e026dc0a2f17cabb14d58263decb/midas/backbones/swin2.py#L26
pretrained_window_sizes = (0, 0, 0, 0)
elif "base" in model_name:
embed_dim = 128
depths = (2, 2, 18, 2)
num_heads = (4, 8, 16, 32)
window_size = 24
pretrained_window_sizes = (12, 12, 12, 6)
elif "large" in model_name:
embed_dim = 192
depths = (2, 2, 18, 2)
num_heads = (6, 12, 24, 48)
window_size = 24
pretrained_window_sizes = (12, 12, 12, 6)
if "384" in model_name:
image_size = 384
elif "256" in model_name:
image_size = 256
else:
raise ValueError("Model not supported, to do")
backbone_config = Swinv2Config(
image_size=image_size,
embed_dim=embed_dim,
depths=depths,
window_size=window_size,
pretrained_window_sizes=pretrained_window_sizes,
num_heads=num_heads,
out_features=["stage1", "stage2", "stage3", "stage4"],
)
if model_name == "dpt-swinv2-tiny-256":
neck_hidden_sizes = [96, 192, 384, 768]
elif model_name == "dpt-swinv2-base-384":
neck_hidden_sizes = [128, 256, 512, 1024]
elif model_name == "dpt-swinv2-large-384":
neck_hidden_sizes = [192, 384, 768, 1536]
config = DPTConfig(backbone_config=backbone_config, neck_hidden_sizes=neck_hidden_sizes)
return config, image_size
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config):
rename_keys = []
# fmt: off
# stem
rename_keys.append(("pretrained.model.patch_embed.proj.weight", "backbone.embeddings.patch_embeddings.projection.weight"))
rename_keys.append(("pretrained.model.patch_embed.proj.bias", "backbone.embeddings.patch_embeddings.projection.bias"))
rename_keys.append(("pretrained.model.patch_embed.norm.weight", "backbone.embeddings.norm.weight"))
rename_keys.append(("pretrained.model.patch_embed.norm.bias", "backbone.embeddings.norm.bias"))
# transformer encoder
for i in range(len(config.backbone_config.depths)):
for j in range(config.backbone_config.depths[i]):
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.logit_scale", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.logit_scale"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.cpb_mlp.0.weight", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.continuous_position_bias_mlp.0.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.cpb_mlp.0.bias", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.continuous_position_bias_mlp.0.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.cpb_mlp.2.weight", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.continuous_position_bias_mlp.2.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.q_bias", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.query.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.v_bias", f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.value.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.proj.weight", f"backbone.encoder.layers.{i}.blocks.{j}.attention.output.dense.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.attn.proj.bias", f"backbone.encoder.layers.{i}.blocks.{j}.attention.output.dense.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.norm1.weight", f"backbone.encoder.layers.{i}.blocks.{j}.layernorm_before.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.norm1.bias", f"backbone.encoder.layers.{i}.blocks.{j}.layernorm_before.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.mlp.fc1.weight", f"backbone.encoder.layers.{i}.blocks.{j}.intermediate.dense.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.mlp.fc1.bias", f"backbone.encoder.layers.{i}.blocks.{j}.intermediate.dense.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.mlp.fc2.weight", f"backbone.encoder.layers.{i}.blocks.{j}.output.dense.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.mlp.fc2.bias", f"backbone.encoder.layers.{i}.blocks.{j}.output.dense.bias"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.norm2.weight", f"backbone.encoder.layers.{i}.blocks.{j}.layernorm_after.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.blocks.{j}.norm2.bias", f"backbone.encoder.layers.{i}.blocks.{j}.layernorm_after.bias"))
# downsample parameters
if i in [0,1,2]:
rename_keys.append((f"pretrained.model.layers.{i}.downsample.reduction.weight", f"backbone.encoder.layers.{i}.downsample.reduction.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.downsample.norm.weight", f"backbone.encoder.layers.{i}.downsample.norm.weight"))
rename_keys.append((f"pretrained.model.layers.{i}.downsample.norm.bias", f"backbone.encoder.layers.{i}.downsample.norm.bias"))
# note: non-Transformer backbones like Swinv2, LeViT et al don't require activation postprocessing (readout projections + resize blocks)
# refinenet (tricky here)
mapping = {1:3, 2:2, 3:1, 4:0}
for i in range(1, 5):
j = mapping[i]
rename_keys.append((f"scratch.refinenet{i}.out_conv.weight", f"neck.fusion_stage.layers.{j}.projection.weight"))
rename_keys.append((f"scratch.refinenet{i}.out_conv.bias", f"neck.fusion_stage.layers.{j}.projection.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv1.weight", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution1.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv1.bias", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution1.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv2.weight", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution2.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv2.bias", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution2.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv1.weight", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution1.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv1.bias", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution1.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv2.weight", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution2.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv2.bias", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution2.bias"))
# scratch convolutions
for i in range(4):
rename_keys.append((f"scratch.layer{i+1}_rn.weight", f"neck.convs.{i}.weight"))
# head
for i in range(0, 5, 2):
rename_keys.append((f"scratch.output_conv.{i}.weight", f"head.head.{i}.weight"))
rename_keys.append((f"scratch.output_conv.{i}.bias", f"head.head.{i}.bias"))
return rename_keys
def remove_ignore_keys_(state_dict):
ignore_keys = ["pretrained.model.head.weight", "pretrained.model.head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config, model):
for i in range(len(config.backbone_config.depths)):
for j in range(config.backbone_config.depths[i]):
dim = model.backbone.encoder.layers[i].blocks[j].attention.self.all_head_size
# read in weights + bias of input projection layer (in original implementation, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"pretrained.model.layers.{i}.blocks.{j}.attn.qkv.weight")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.query.weight"] = in_proj_weight[:dim, :]
state_dict[f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.key.weight"] = in_proj_weight[
dim : dim * 2, :
]
state_dict[f"backbone.encoder.layers.{i}.blocks.{j}.attention.self.value.weight"] = in_proj_weight[
-dim:, :
]
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_dpt_checkpoint(model_name, pytorch_dump_folder_path, verify_logits, push_to_hub):
"""
Copy/paste/tweak model's weights to our DPT structure.
"""
name_to_url = {
"dpt-swinv2-tiny-256": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_swin2_tiny_256.pt",
"dpt-swinv2-base-384": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_swin2_base_384.pt",
"dpt-swinv2-large-384": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_swin2_large_384.pt",
}
# define DPT configuration based on URL
checkpoint_url = name_to_url[model_name]
config, image_size = get_dpt_config(model_name)
# load original state_dict from URL
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")
# load HuggingFace model
model = DPTForDepthEstimation(config)
# remove certain keys
remove_ignore_keys_(state_dict)
# rename keys
rename_keys = create_rename_keys(config)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
# read in qkv matrices
read_in_q_k_v(state_dict, config, model)
missing_keys, unexpected_keys = model.load_state_dict(state_dict, strict=False)
print("Missing keys:", missing_keys)
print("Unexpected keys:", unexpected_keys)
model.eval()
# Check outputs on an image
processor = DPTImageProcessor(size={"height": image_size, "width": image_size})
image = prepare_img()
processor(image, return_tensors="pt")
if verify_logits:
from torchvision import transforms
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
transforms = transforms.Compose(
[
transforms.Resize((image_size, image_size)),
transforms.ToTensor(),
]
)
pixel_values = transforms(image).unsqueeze(0)
# forward pass
with torch.no_grad():
outputs = model(pixel_values)
predicted_depth = outputs.predicted_depth
print("Shape of predicted depth:", predicted_depth.shape)
print("First values of predicted depth:", predicted_depth[0, :3, :3])
# assert logits
if model_name == "dpt-swinv2-base-384":
# OK, checked
expected_shape = torch.Size([1, 384, 384])
expected_slice = torch.tensor(
[
[1998.5575, 1997.3887, 2009.2981],
[1952.8607, 1979.6488, 2001.0854],
[1953.7697, 1961.7711, 1968.8904],
],
)
elif model_name == "dpt-swinv2-tiny-256":
# OK, checked
expected_shape = torch.Size([1, 256, 256])
expected_slice = torch.tensor(
[[978.9163, 976.5215, 978.5349], [974.1859, 971.7249, 975.8046], [971.3419, 970.3118, 971.6830]],
)
elif model_name == "dpt-swinv2-large-384":
# OK, checked
expected_shape = torch.Size([1, 384, 384])
expected_slice = torch.tensor(
[
[1203.7206, 1200.1495, 1197.8234],
[1196.2484, 1183.5033, 1186.4640],
[1178.8131, 1182.3260, 1174.3975],
],
)
assert predicted_depth.shape == torch.Size(expected_shape)
assert torch.allclose(predicted_depth[0, :3, :3], expected_slice)
print("Looks ok!")
if pytorch_dump_folder_path is not None:
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model and processor to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing model and processor to hub...")
model.push_to_hub(repo_id=f"Intel/{model_name}")
processor.push_to_hub(repo_id=f"Intel/{model_name}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default="dpt-swinv2-base-384",
type=str,
choices=["dpt-swinv2-tiny-256", "dpt-swinv2-base-384", "dpt-swinv2-large-384"],
help="Name of the model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--verify_logits",
action="store_true",
help="Whether to verify logits after conversion.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
help="Whether to push the model to the hub after conversion.",
)
args = parser.parse_args()
convert_dpt_checkpoint(args.model_name, args.pytorch_dump_folder_path, args.verify_logits, args.push_to_hub)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/convert_dpt_hybrid_to_pytorch.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DPT checkpoints from the original repository. URL: https://github.com/isl-org/DPT"""
import argparse
import json
from pathlib import Path
import requests
import torch
from huggingface_hub import cached_download, hf_hub_url
from PIL import Image
from transformers import DPTConfig, DPTForDepthEstimation, DPTForSemanticSegmentation, DPTImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def get_dpt_config(checkpoint_url):
config = DPTConfig(embedding_type="hybrid")
if "large" in checkpoint_url:
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.backbone_out_indices = [5, 11, 17, 23]
config.neck_hidden_sizes = [256, 512, 1024, 1024]
expected_shape = (1, 384, 384)
if "nyu" or "midas" in checkpoint_url:
config.hidden_size = 768
config.reassemble_factors = [1, 1, 1, 0.5]
config.neck_hidden_sizes = [256, 512, 768, 768]
config.num_labels = 150
config.patch_size = 16
expected_shape = (1, 384, 384)
config.use_batch_norm_in_fusion_residual = False
config.readout_type = "project"
if "ade" in checkpoint_url:
config.use_batch_norm_in_fusion_residual = True
config.hidden_size = 768
config.reassemble_stage = [1, 1, 1, 0.5]
config.num_labels = 150
config.patch_size = 16
repo_id = "huggingface/label-files"
filename = "ade20k-id2label.json"
id2label = json.load(open(cached_download(hf_hub_url(repo_id, filename, repo_type="dataset")), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
expected_shape = [1, 150, 480, 480]
return config, expected_shape
def remove_ignore_keys_(state_dict):
ignore_keys = ["pretrained.model.head.weight", "pretrained.model.head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(name):
if (
"pretrained.model" in name
and "cls_token" not in name
and "pos_embed" not in name
and "patch_embed" not in name
):
name = name.replace("pretrained.model", "dpt.encoder")
if "pretrained.model" in name:
name = name.replace("pretrained.model", "dpt.embeddings")
if "patch_embed" in name:
name = name.replace("patch_embed", "")
if "pos_embed" in name:
name = name.replace("pos_embed", "position_embeddings")
if "attn.proj" in name:
name = name.replace("attn.proj", "attention.output.dense")
if "proj" in name and "project" not in name:
name = name.replace("proj", "projection")
if "blocks" in name:
name = name.replace("blocks", "layer")
if "mlp.fc1" in name:
name = name.replace("mlp.fc1", "intermediate.dense")
if "mlp.fc2" in name:
name = name.replace("mlp.fc2", "output.dense")
if "norm1" in name and "backbone" not in name:
name = name.replace("norm1", "layernorm_before")
if "norm2" in name and "backbone" not in name:
name = name.replace("norm2", "layernorm_after")
if "scratch.output_conv" in name:
name = name.replace("scratch.output_conv", "head")
if "scratch" in name:
name = name.replace("scratch", "neck")
if "layer1_rn" in name:
name = name.replace("layer1_rn", "convs.0")
if "layer2_rn" in name:
name = name.replace("layer2_rn", "convs.1")
if "layer3_rn" in name:
name = name.replace("layer3_rn", "convs.2")
if "layer4_rn" in name:
name = name.replace("layer4_rn", "convs.3")
if "refinenet" in name:
layer_idx = int(name[len("neck.refinenet") : len("neck.refinenet") + 1])
# tricky here: we need to map 4 to 0, 3 to 1, 2 to 2 and 1 to 3
name = name.replace(f"refinenet{layer_idx}", f"fusion_stage.layers.{abs(layer_idx-4)}")
if "out_conv" in name:
name = name.replace("out_conv", "projection")
if "resConfUnit1" in name:
name = name.replace("resConfUnit1", "residual_layer1")
if "resConfUnit2" in name:
name = name.replace("resConfUnit2", "residual_layer2")
if "conv1" in name:
name = name.replace("conv1", "convolution1")
if "conv2" in name:
name = name.replace("conv2", "convolution2")
# readout blocks
if "pretrained.act_postprocess1.0.project.0" in name:
name = name.replace("pretrained.act_postprocess1.0.project.0", "neck.reassemble_stage.readout_projects.0.0")
if "pretrained.act_postprocess2.0.project.0" in name:
name = name.replace("pretrained.act_postprocess2.0.project.0", "neck.reassemble_stage.readout_projects.1.0")
if "pretrained.act_postprocess3.0.project.0" in name:
name = name.replace("pretrained.act_postprocess3.0.project.0", "neck.reassemble_stage.readout_projects.2.0")
if "pretrained.act_postprocess4.0.project.0" in name:
name = name.replace("pretrained.act_postprocess4.0.project.0", "neck.reassemble_stage.readout_projects.3.0")
# resize blocks
if "pretrained.act_postprocess1.3" in name:
name = name.replace("pretrained.act_postprocess1.3", "neck.reassemble_stage.layers.0.projection")
if "pretrained.act_postprocess1.4" in name:
name = name.replace("pretrained.act_postprocess1.4", "neck.reassemble_stage.layers.0.resize")
if "pretrained.act_postprocess2.3" in name:
name = name.replace("pretrained.act_postprocess2.3", "neck.reassemble_stage.layers.1.projection")
if "pretrained.act_postprocess2.4" in name:
name = name.replace("pretrained.act_postprocess2.4", "neck.reassemble_stage.layers.1.resize")
if "pretrained.act_postprocess3.3" in name:
name = name.replace("pretrained.act_postprocess3.3", "neck.reassemble_stage.layers.2.projection")
if "pretrained.act_postprocess4.3" in name:
name = name.replace("pretrained.act_postprocess4.3", "neck.reassemble_stage.layers.3.projection")
if "pretrained.act_postprocess4.4" in name:
name = name.replace("pretrained.act_postprocess4.4", "neck.reassemble_stage.layers.3.resize")
if "pretrained" in name:
name = name.replace("pretrained", "dpt")
if "bn" in name:
name = name.replace("bn", "batch_norm")
if "head" in name:
name = name.replace("head", "head.head")
if "encoder.norm" in name:
name = name.replace("encoder.norm", "layernorm")
if "auxlayer" in name:
name = name.replace("auxlayer", "auxiliary_head.head")
if "backbone" in name:
name = name.replace("backbone", "backbone.bit.encoder")
if ".." in name:
name = name.replace("..", ".")
if "stem.conv" in name:
name = name.replace("stem.conv", "bit.embedder.convolution")
if "blocks" in name:
name = name.replace("blocks", "layers")
if "convolution" in name and "backbone" in name:
name = name.replace("convolution", "conv")
if "layer" in name and "backbone" in name:
name = name.replace("layer", "layers")
if "backbone.bit.encoder.bit" in name:
name = name.replace("backbone.bit.encoder.bit", "backbone.bit")
if "embedder.conv" in name:
name = name.replace("embedder.conv", "embedder.convolution")
if "backbone.bit.encoder.stem.norm" in name:
name = name.replace("backbone.bit.encoder.stem.norm", "backbone.bit.embedder.norm")
return name
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config):
for i in range(config.num_hidden_layers):
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"dpt.encoder.layer.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"dpt.encoder.layer.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"dpt.encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[: config.hidden_size, :]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_dpt_checkpoint(checkpoint_url, pytorch_dump_folder_path, push_to_hub, model_name, show_prediction):
"""
Copy/paste/tweak model's weights to our DPT structure.
"""
# define DPT configuration based on URL
config, expected_shape = get_dpt_config(checkpoint_url)
# load original state_dict from URL
# state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")
state_dict = torch.load(checkpoint_url, map_location="cpu")
# remove certain keys
remove_ignore_keys_(state_dict)
# rename keys
for key in state_dict.copy().keys():
val = state_dict.pop(key)
state_dict[rename_key(key)] = val
# read in qkv matrices
read_in_q_k_v(state_dict, config)
# load HuggingFace model
model = DPTForSemanticSegmentation(config) if "ade" in checkpoint_url else DPTForDepthEstimation(config)
model.load_state_dict(state_dict)
model.eval()
# Check outputs on an image
size = 480 if "ade" in checkpoint_url else 384
image_processor = DPTImageProcessor(size=size)
image = prepare_img()
encoding = image_processor(image, return_tensors="pt")
# forward pass
outputs = model(**encoding).logits if "ade" in checkpoint_url else model(**encoding).predicted_depth
if show_prediction:
prediction = (
torch.nn.functional.interpolate(
outputs.unsqueeze(1),
size=(image.size[1], image.size[0]),
mode="bicubic",
align_corners=False,
)
.squeeze()
.cpu()
.numpy()
)
Image.fromarray((prediction / prediction.max()) * 255).show()
if pytorch_dump_folder_path is not None:
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
model.push_to_hub("ybelkada/dpt-hybrid-midas")
image_processor.push_to_hub("ybelkada/dpt-hybrid-midas")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--checkpoint_url",
default="https://github.com/intel-isl/DPT/releases/download/1_0/dpt_large-midas-2f21e586.pt",
type=str,
help="URL of the original DPT checkpoint you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
required=False,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
)
parser.add_argument(
"--model_name",
default="dpt-large",
type=str,
help="Name of the model, in case you're pushing to the hub.",
)
parser.add_argument(
"--show_prediction",
action="store_true",
)
args = parser.parse_args()
convert_dpt_checkpoint(
args.checkpoint_url, args.pytorch_dump_folder_path, args.push_to_hub, args.model_name, args.show_prediction
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/convert_dpt_to_pytorch.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DPT checkpoints from the original repository. URL: https://github.com/isl-org/DPT"""
import argparse
import json
from pathlib import Path
import requests
import torch
from huggingface_hub import cached_download, hf_hub_url
from PIL import Image
from transformers import DPTConfig, DPTForDepthEstimation, DPTForSemanticSegmentation, DPTImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def get_dpt_config(checkpoint_url):
config = DPTConfig()
if "large" in checkpoint_url:
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
config.backbone_out_indices = [5, 11, 17, 23]
config.neck_hidden_sizes = [256, 512, 1024, 1024]
expected_shape = (1, 384, 384)
if "ade" in checkpoint_url:
config.use_batch_norm_in_fusion_residual = True
config.num_labels = 150
repo_id = "huggingface/label-files"
filename = "ade20k-id2label.json"
id2label = json.load(open(cached_download(hf_hub_url(repo_id, filename, repo_type="dataset")), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
expected_shape = [1, 150, 480, 480]
return config, expected_shape
def remove_ignore_keys_(state_dict):
ignore_keys = ["pretrained.model.head.weight", "pretrained.model.head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(name):
if (
"pretrained.model" in name
and "cls_token" not in name
and "pos_embed" not in name
and "patch_embed" not in name
):
name = name.replace("pretrained.model", "dpt.encoder")
if "pretrained.model" in name:
name = name.replace("pretrained.model", "dpt.embeddings")
if "patch_embed" in name:
name = name.replace("patch_embed", "patch_embeddings")
if "pos_embed" in name:
name = name.replace("pos_embed", "position_embeddings")
if "attn.proj" in name:
name = name.replace("attn.proj", "attention.output.dense")
if "proj" in name and "project" not in name:
name = name.replace("proj", "projection")
if "blocks" in name:
name = name.replace("blocks", "layer")
if "mlp.fc1" in name:
name = name.replace("mlp.fc1", "intermediate.dense")
if "mlp.fc2" in name:
name = name.replace("mlp.fc2", "output.dense")
if "norm1" in name:
name = name.replace("norm1", "layernorm_before")
if "norm2" in name:
name = name.replace("norm2", "layernorm_after")
if "scratch.output_conv" in name:
name = name.replace("scratch.output_conv", "head")
if "scratch" in name:
name = name.replace("scratch", "neck")
if "layer1_rn" in name:
name = name.replace("layer1_rn", "convs.0")
if "layer2_rn" in name:
name = name.replace("layer2_rn", "convs.1")
if "layer3_rn" in name:
name = name.replace("layer3_rn", "convs.2")
if "layer4_rn" in name:
name = name.replace("layer4_rn", "convs.3")
if "refinenet" in name:
layer_idx = int(name[len("neck.refinenet") : len("neck.refinenet") + 1])
# tricky here: we need to map 4 to 0, 3 to 1, 2 to 2 and 1 to 3
name = name.replace(f"refinenet{layer_idx}", f"fusion_stage.layers.{abs(layer_idx-4)}")
if "out_conv" in name:
name = name.replace("out_conv", "projection")
if "resConfUnit1" in name:
name = name.replace("resConfUnit1", "residual_layer1")
if "resConfUnit2" in name:
name = name.replace("resConfUnit2", "residual_layer2")
if "conv1" in name:
name = name.replace("conv1", "convolution1")
if "conv2" in name:
name = name.replace("conv2", "convolution2")
# readout blocks
if "pretrained.act_postprocess1.0.project.0" in name:
name = name.replace("pretrained.act_postprocess1.0.project.0", "neck.reassemble_stage.readout_projects.0.0")
if "pretrained.act_postprocess2.0.project.0" in name:
name = name.replace("pretrained.act_postprocess2.0.project.0", "neck.reassemble_stage.readout_projects.1.0")
if "pretrained.act_postprocess3.0.project.0" in name:
name = name.replace("pretrained.act_postprocess3.0.project.0", "neck.reassemble_stage.readout_projects.2.0")
if "pretrained.act_postprocess4.0.project.0" in name:
name = name.replace("pretrained.act_postprocess4.0.project.0", "neck.reassemble_stage.readout_projects.3.0")
# resize blocks
if "pretrained.act_postprocess1.3" in name:
name = name.replace("pretrained.act_postprocess1.3", "neck.reassemble_stage.layers.0.projection")
if "pretrained.act_postprocess1.4" in name:
name = name.replace("pretrained.act_postprocess1.4", "neck.reassemble_stage.layers.0.resize")
if "pretrained.act_postprocess2.3" in name:
name = name.replace("pretrained.act_postprocess2.3", "neck.reassemble_stage.layers.1.projection")
if "pretrained.act_postprocess2.4" in name:
name = name.replace("pretrained.act_postprocess2.4", "neck.reassemble_stage.layers.1.resize")
if "pretrained.act_postprocess3.3" in name:
name = name.replace("pretrained.act_postprocess3.3", "neck.reassemble_stage.layers.2.projection")
if "pretrained.act_postprocess4.3" in name:
name = name.replace("pretrained.act_postprocess4.3", "neck.reassemble_stage.layers.3.projection")
if "pretrained.act_postprocess4.4" in name:
name = name.replace("pretrained.act_postprocess4.4", "neck.reassemble_stage.layers.3.resize")
if "pretrained" in name:
name = name.replace("pretrained", "dpt")
if "bn" in name:
name = name.replace("bn", "batch_norm")
if "head" in name:
name = name.replace("head", "head.head")
if "encoder.norm" in name:
name = name.replace("encoder.norm", "layernorm")
if "auxlayer" in name:
name = name.replace("auxlayer", "auxiliary_head.head")
return name
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config):
for i in range(config.num_hidden_layers):
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"dpt.encoder.layer.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"dpt.encoder.layer.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"dpt.encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[: config.hidden_size, :]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"dpt.encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_dpt_checkpoint(checkpoint_url, pytorch_dump_folder_path, push_to_hub, model_name):
"""
Copy/paste/tweak model's weights to our DPT structure.
"""
# define DPT configuration based on URL
config, expected_shape = get_dpt_config(checkpoint_url)
# load original state_dict from URL
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")
# remove certain keys
remove_ignore_keys_(state_dict)
# rename keys
for key in state_dict.copy().keys():
val = state_dict.pop(key)
state_dict[rename_key(key)] = val
# read in qkv matrices
read_in_q_k_v(state_dict, config)
# load HuggingFace model
model = DPTForSemanticSegmentation(config) if "ade" in checkpoint_url else DPTForDepthEstimation(config)
model.load_state_dict(state_dict)
model.eval()
# Check outputs on an image
size = 480 if "ade" in checkpoint_url else 384
image_processor = DPTImageProcessor(size=size)
image = prepare_img()
encoding = image_processor(image, return_tensors="pt")
# forward pass
outputs = model(**encoding).logits if "ade" in checkpoint_url else model(**encoding).predicted_depth
# Assert logits
expected_slice = torch.tensor([[6.3199, 6.3629, 6.4148], [6.3850, 6.3615, 6.4166], [6.3519, 6.3176, 6.3575]])
if "ade" in checkpoint_url:
expected_slice = torch.tensor([[4.0480, 4.2420, 4.4360], [4.3124, 4.5693, 4.8261], [4.5768, 4.8965, 5.2163]])
assert outputs.shape == torch.Size(expected_shape)
assert (
torch.allclose(outputs[0, 0, :3, :3], expected_slice, atol=1e-4)
if "ade" in checkpoint_url
else torch.allclose(outputs[0, :3, :3], expected_slice)
)
print("Looks ok!")
if pytorch_dump_folder_path is not None:
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving image processor to {pytorch_dump_folder_path}")
image_processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing model to hub...")
model.push_to_hub(
repo_path_or_name=Path(pytorch_dump_folder_path, model_name),
organization="nielsr",
commit_message="Add model",
use_temp_dir=True,
)
image_processor.push_to_hub(
repo_path_or_name=Path(pytorch_dump_folder_path, model_name),
organization="nielsr",
commit_message="Add image processor",
use_temp_dir=True,
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--checkpoint_url",
default="https://github.com/intel-isl/DPT/releases/download/1_0/dpt_large-midas-2f21e586.pt",
type=str,
help="URL of the original DPT checkpoint you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
required=False,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
)
parser.add_argument(
"--model_name",
default="dpt-large",
type=str,
required=False,
help="Name of the model, in case you're pushing to the hub.",
)
args = parser.parse_args()
convert_dpt_checkpoint(args.checkpoint_url, args.pytorch_dump_folder_path, args.push_to_hub, args.model_name)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/feature_extraction_dpt.py
|
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Feature extractor class for DPT."""
import warnings
from ...utils import logging
from .image_processing_dpt import DPTImageProcessor
logger = logging.get_logger(__name__)
class DPTFeatureExtractor(DPTImageProcessor):
def __init__(self, *args, **kwargs) -> None:
warnings.warn(
"The class DPTFeatureExtractor is deprecated and will be removed in version 5 of Transformers. Please"
" use DPTImageProcessor instead.",
FutureWarning,
)
super().__init__(*args, **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/convert_dinov2_depth_to_hf.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DINOv2 + DPT checkpoints from the original repository. URL:
https://github.com/facebookresearch/dinov2/tree/main"""
import argparse
import itertools
import math
from pathlib import Path
import requests
import torch
from PIL import Image
from torchvision import transforms
from transformers import Dinov2Config, DPTConfig, DPTForDepthEstimation, DPTImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def get_dpt_config(model_name):
if "small" in model_name:
# equivalent to stage 3, stage 6, stage 9, stage 12
backbone_config = Dinov2Config.from_pretrained(
"facebook/dinov2-small", out_indices=[3, 6, 9, 12], apply_layernorm=False, reshape_hidden_states=False
)
neck_hidden_sizes = [48, 96, 192, 384]
elif "base" in model_name:
backbone_config = Dinov2Config.from_pretrained(
"facebook/dinov2-base", out_indices=[3, 6, 9, 12], apply_layernorm=False, reshape_hidden_states=False
)
neck_hidden_sizes = [96, 192, 384, 768]
elif "large" in model_name:
backbone_config = Dinov2Config.from_pretrained(
"facebook/dinov2-large", out_indices=[5, 12, 18, 24], apply_layernorm=False, reshape_hidden_states=False
)
neck_hidden_sizes = [128, 256, 512, 1024]
elif "giant" in model_name:
backbone_config = Dinov2Config.from_pretrained(
"facebook/dinov2-giant", out_indices=[10, 20, 30, 40], apply_layernorm=False, reshape_hidden_states=False
)
neck_hidden_sizes = [192, 384, 768, 1536]
else:
raise NotImplementedError("To do")
config = DPTConfig(
backbone_config=backbone_config,
neck_hidden_sizes=neck_hidden_sizes,
use_bias_in_fusion_residual=False,
add_projection=True,
)
return config
# here we list all DPT keys to be renamed (original name on the left, our name on the right)
def create_rename_keys_dpt(config):
rename_keys = []
# fmt: off
# activation postprocessing (projections, readout projections + resize blocks)
for i in range(4):
rename_keys.append((f"decode_head.reassemble_blocks.projects.{i}.conv.weight", f"neck.reassemble_stage.layers.{i}.projection.weight"))
rename_keys.append((f"decode_head.reassemble_blocks.projects.{i}.conv.bias", f"neck.reassemble_stage.layers.{i}.projection.bias"))
rename_keys.append((f"decode_head.reassemble_blocks.readout_projects.{i}.0.weight", f"neck.reassemble_stage.readout_projects.{i}.0.weight"))
rename_keys.append((f"decode_head.reassemble_blocks.readout_projects.{i}.0.bias", f"neck.reassemble_stage.readout_projects.{i}.0.bias"))
if i != 2:
rename_keys.append((f"decode_head.reassemble_blocks.resize_layers.{i}.weight", f"neck.reassemble_stage.layers.{i}.resize.weight"))
rename_keys.append((f"decode_head.reassemble_blocks.resize_layers.{i}.bias", f"neck.reassemble_stage.layers.{i}.resize.bias"))
# fusion layers
for i in range(4):
rename_keys.append((f"decode_head.fusion_blocks.{i}.project.conv.weight", f"neck.fusion_stage.layers.{i}.projection.weight"))
rename_keys.append((f"decode_head.fusion_blocks.{i}.project.conv.bias", f"neck.fusion_stage.layers.{i}.projection.bias"))
if i != 0:
rename_keys.append((f"decode_head.fusion_blocks.{i}.res_conv_unit1.conv1.conv.weight", f"neck.fusion_stage.layers.{i}.residual_layer1.convolution1.weight"))
rename_keys.append((f"decode_head.fusion_blocks.{i}.res_conv_unit1.conv2.conv.weight", f"neck.fusion_stage.layers.{i}.residual_layer1.convolution2.weight"))
rename_keys.append((f"decode_head.fusion_blocks.{i}.res_conv_unit2.conv1.conv.weight", f"neck.fusion_stage.layers.{i}.residual_layer2.convolution1.weight"))
rename_keys.append((f"decode_head.fusion_blocks.{i}.res_conv_unit2.conv2.conv.weight", f"neck.fusion_stage.layers.{i}.residual_layer2.convolution2.weight"))
# neck convolutions
for i in range(4):
rename_keys.append((f"decode_head.convs.{i}.conv.weight", f"neck.convs.{i}.weight"))
# head
rename_keys.append(("decode_head.project.conv.weight", "head.projection.weight"))
rename_keys.append(("decode_head.project.conv.bias", "head.projection.bias"))
for i in range(0, 5, 2):
rename_keys.append((f"decode_head.conv_depth.head.{i}.weight", f"head.head.{i}.weight"))
rename_keys.append((f"decode_head.conv_depth.head.{i}.bias", f"head.head.{i}.bias"))
# fmt: on
return rename_keys
# here we list all backbone keys to be renamed (original name on the left, our name on the right)
def create_rename_keys_backbone(config):
rename_keys = []
# fmt: off
# patch embedding layer
rename_keys.append(("cls_token", "backbone.embeddings.cls_token"))
rename_keys.append(("mask_token", "backbone.embeddings.mask_token"))
rename_keys.append(("pos_embed", "backbone.embeddings.position_embeddings"))
rename_keys.append(("patch_embed.proj.weight", "backbone.embeddings.patch_embeddings.projection.weight"))
rename_keys.append(("patch_embed.proj.bias", "backbone.embeddings.patch_embeddings.projection.bias"))
# Transfomer encoder
for i in range(config.backbone_config.num_hidden_layers):
# layernorms
rename_keys.append((f"blocks.{i}.norm1.weight", f"backbone.encoder.layer.{i}.norm1.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"backbone.encoder.layer.{i}.norm1.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"backbone.encoder.layer.{i}.norm2.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"backbone.encoder.layer.{i}.norm2.bias"))
# MLP
if config.backbone_config.use_swiglu_ffn:
rename_keys.append((f"blocks.{i}.mlp.w12.weight", f"backbone.encoder.layer.{i}.mlp.w12.weight"))
rename_keys.append((f"blocks.{i}.mlp.w12.bias", f"backbone.encoder.layer.{i}.mlp.w12.bias"))
rename_keys.append((f"blocks.{i}.mlp.w3.weight", f"backbone.encoder.layer.{i}.mlp.w3.weight"))
rename_keys.append((f"blocks.{i}.mlp.w3.bias", f"backbone.encoder.layer.{i}.mlp.w3.bias"))
else:
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"backbone.encoder.layer.{i}.mlp.fc1.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"backbone.encoder.layer.{i}.mlp.fc1.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"backbone.encoder.layer.{i}.mlp.fc2.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"backbone.encoder.layer.{i}.mlp.fc2.bias"))
# layerscale
rename_keys.append((f"blocks.{i}.ls1.gamma", f"backbone.encoder.layer.{i}.layer_scale1.lambda1"))
rename_keys.append((f"blocks.{i}.ls2.gamma", f"backbone.encoder.layer.{i}.layer_scale2.lambda1"))
# attention projection layer
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"backbone.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"backbone.encoder.layer.{i}.attention.output.dense.bias"))
# fmt: on
rename_keys.append(("norm.weight", "backbone.layernorm.weight"))
rename_keys.append(("norm.bias", "backbone.layernorm.bias"))
return rename_keys
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config):
for i in range(config.backbone_config.num_hidden_layers):
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"blocks.{i}.attn.qkv.bias")
hidden_size = config.backbone_config.hidden_size
# next, add query, keys and values (in that order) to the state dict
state_dict[f"backbone.encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[:hidden_size, :]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[:hidden_size]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
hidden_size : hidden_size * 2, :
]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
hidden_size : hidden_size * 2
]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[-hidden_size:, :]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-hidden_size:]
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
# We will verify our results on an image of cute cats
def prepare_img():
url = "https://dl.fbaipublicfiles.com/dinov2/images/example.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
name_to_url = {
"dpt-dinov2-small-nyu": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vits14/dinov2_vits14_nyu_dpt_head.pth",
"dpt-dinov2-small-kitti": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vits14/dinov2_vits14_kitti_dpt_head.pth",
"dpt-dinov2-base-nyu": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitb14/dinov2_vitb14_nyu_dpt_head.pth",
"dpt-dinov2-base-kitti": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitb14/dinov2_vitb14_kitti_dpt_head.pth",
"dpt-dinov2-large-nyu": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitl14/dinov2_vitl14_nyu_dpt_head.pth",
"dpt-dinov2-large-kitti": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitl14/dinov2_vitl14_kitti_dpt_head.pth",
"dpt-dinov2-giant-nyu": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitg14/dinov2_vitg14_nyu_dpt_head.pth",
"dpt-dinov2-giant-kitti": "https://dl.fbaipublicfiles.com/dinov2/dinov2_vitg14/dinov2_vitg14_kitti_dpt_head.pth",
}
def get_original_pixel_values(image):
class CenterPadding(object):
def __init__(self, multiple):
super().__init__()
self.multiple = multiple
def _get_pad(self, size):
new_size = math.ceil(size / self.multiple) * self.multiple
pad_size = new_size - size
pad_size_left = pad_size // 2
pad_size_right = pad_size - pad_size_left
return pad_size_left, pad_size_right
def __call__(self, img):
pads = list(itertools.chain.from_iterable(self._get_pad(m) for m in img.shape[-2:][::-1]))
output = torch.nn.functional.pad(img, pads)
return output
def __repr__(self):
return self.__class__.__name__ + "()"
def make_depth_transform() -> transforms.Compose:
return transforms.Compose(
[
transforms.ToTensor(),
lambda x: 255.0 * x[:3], # Discard alpha component and scale by 255
transforms.Normalize(
mean=(123.675, 116.28, 103.53),
std=(58.395, 57.12, 57.375),
),
CenterPadding(multiple=14),
]
)
transform = make_depth_transform()
original_pixel_values = transform(image).unsqueeze(0)
return original_pixel_values
@torch.no_grad()
def convert_dpt_checkpoint(model_name, pytorch_dump_folder_path, push_to_hub, verify_logits):
"""
Copy/paste/tweak model's weights to our DPT structure.
"""
# define DPT configuration based on URL
checkpoint_url = name_to_url[model_name]
config = get_dpt_config(model_name)
# load original DPT state_dict from URL
print("URL:", checkpoint_url)
dpt_state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")["state_dict"]
# rename keys
rename_keys = create_rename_keys_dpt(config)
for src, dest in rename_keys:
rename_key(dpt_state_dict, src, dest)
# load original backbone state_dict from URL
if "small" in model_name:
original_model = torch.hub.load("facebookresearch/dinov2", "dinov2_vits14")
elif "base" in model_name:
original_model = torch.hub.load("facebookresearch/dinov2", "dinov2_vitb14")
elif "large" in model_name:
original_model = torch.hub.load("facebookresearch/dinov2", "dinov2_vitl14")
elif "giant" in model_name:
original_model = torch.hub.load("facebookresearch/dinov2", "dinov2_vitg14")
else:
raise NotImplementedError("To do")
original_model.eval()
backbone_state_dict = original_model.state_dict()
# rename keys
rename_keys = create_rename_keys_backbone(config)
for src, dest in rename_keys:
rename_key(backbone_state_dict, src, dest)
# read in qkv matrices
read_in_q_k_v(backbone_state_dict, config)
for key, val in backbone_state_dict.copy().items():
val = backbone_state_dict.pop(key)
if "w12" in key:
key = key.replace("w12", "weights_in")
if "w3" in key:
key = key.replace("w3", "weights_out")
backbone_state_dict[key] = val
# merge state_dicts
state_dict = {**backbone_state_dict, **dpt_state_dict}
# load HuggingFace model
model = DPTForDepthEstimation(config)
missing_keys, unexpected_keys = model.load_state_dict(state_dict, strict=False)
print("Missing keys:", missing_keys)
print("Unexpected keys:", unexpected_keys)
assert missing_keys == [
"neck.fusion_stage.layers.0.residual_layer1.convolution1.weight",
"neck.fusion_stage.layers.0.residual_layer1.convolution2.weight",
]
model.eval()
# Verify image processor
processor = DPTImageProcessor(
do_resize=False,
do_rescale=False,
do_pad=True,
size_divisor=14,
do_normalize=True,
image_mean=(123.675, 116.28, 103.53),
image_std=(58.395, 57.12, 57.375),
)
image = prepare_img()
pixel_values = processor(image, return_tensors="pt").pixel_values.float()
original_pixel_values = get_original_pixel_values(image)
assert torch.allclose(pixel_values, original_pixel_values)
# Verify forward pass
with torch.no_grad():
outputs = model(pixel_values)
predicted_depth = outputs.predicted_depth
print("Shape of predicted depth:", predicted_depth.shape)
print("First values of predicted depth:", predicted_depth[0, :3, :3])
# assert logits
if verify_logits:
if model_name == "dpt-dinov2-small-nyu":
expected_shape = torch.Size([1, 576, 736])
expected_slice = torch.tensor(
[[3.3576, 3.4741, 3.4345], [3.4324, 3.5012, 3.2775], [3.2560, 3.3563, 3.2354]]
)
assert predicted_depth.shape == torch.Size(expected_shape)
assert torch.allclose(predicted_depth[0, :3, :3], expected_slice, atol=1e-5)
print("Looks ok!")
if pytorch_dump_folder_path is not None:
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model and processor to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing model and processor to hub...")
model.push_to_hub(repo_id=f"facebook/{model_name}")
processor.push_to_hub(repo_id=f"facebook/{model_name}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default="dpt-dinov2-small-nyu",
type=str,
choices=name_to_url.keys(),
help="Name of the model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
help="Whether to push the model to the hub after conversion.",
)
parser.add_argument(
"--verify_logits",
action="store_true",
required=False,
help="Path to the output PyTorch model directory.",
)
args = parser.parse_args()
convert_dpt_checkpoint(args.model_name, args.pytorch_dump_folder_path, args.push_to_hub, args.verify_logits)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/__init__.py
|
# Copyright 2022 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...file_utils import _LazyModule, is_tokenizers_available, is_torch_available, is_vision_available
from ...utils import OptionalDependencyNotAvailable
_import_structure = {"configuration_dpt": ["DPT_PRETRAINED_CONFIG_ARCHIVE_MAP", "DPTConfig"]}
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["feature_extraction_dpt"] = ["DPTFeatureExtractor"]
_import_structure["image_processing_dpt"] = ["DPTImageProcessor"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_dpt"] = [
"DPT_PRETRAINED_MODEL_ARCHIVE_LIST",
"DPTForDepthEstimation",
"DPTForSemanticSegmentation",
"DPTModel",
"DPTPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_dpt import DPT_PRETRAINED_CONFIG_ARCHIVE_MAP, DPTConfig
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .feature_extraction_dpt import DPTFeatureExtractor
from .image_processing_dpt import DPTImageProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_dpt import (
DPT_PRETRAINED_MODEL_ARCHIVE_LIST,
DPTForDepthEstimation,
DPTForSemanticSegmentation,
DPTModel,
DPTPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/configuration_dpt.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" DPT model configuration"""
import copy
from ...configuration_utils import PretrainedConfig
from ...utils import logging
from ..auto.configuration_auto import CONFIG_MAPPING
from ..bit import BitConfig
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import DPT_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class DPTConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`DPTModel`]. It is used to instantiate an DPT
model according to the specified arguments, defining the model architecture. Instantiating a configuration with the
defaults will yield a similar configuration to that of the DPT
[Intel/dpt-large](https://huggingface.co/Intel/dpt-large) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
intermediate_size (`int`, *optional*, defaults to 3072):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
hidden_act (`str` or `function`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"selu"` and `"gelu_new"` are supported.
hidden_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
layer_norm_eps (`float`, *optional*, defaults to 1e-12):
The epsilon used by the layer normalization layers.
image_size (`int`, *optional*, defaults to 384):
The size (resolution) of each image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
num_channels (`int`, *optional*, defaults to 3):
The number of input channels.
is_hybrid (`bool`, *optional*, defaults to `False`):
Whether to use a hybrid backbone. Useful in the context of loading DPT-Hybrid models.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to the queries, keys and values.
backbone_out_indices (`List[int]`, *optional*, defaults to `[2, 5, 8, 11]`):
Indices of the intermediate hidden states to use from backbone.
readout_type (`str`, *optional*, defaults to `"project"`):
The readout type to use when processing the readout token (CLS token) of the intermediate hidden states of
the ViT backbone. Can be one of [`"ignore"`, `"add"`, `"project"`].
- "ignore" simply ignores the CLS token.
- "add" passes the information from the CLS token to all other tokens by adding the representations.
- "project" passes information to the other tokens by concatenating the readout to all other tokens before
projecting the
representation to the original feature dimension D using a linear layer followed by a GELU non-linearity.
reassemble_factors (`List[int]`, *optional*, defaults to `[4, 2, 1, 0.5]`):
The up/downsampling factors of the reassemble layers.
neck_hidden_sizes (`List[str]`, *optional*, defaults to `[96, 192, 384, 768]`):
The hidden sizes to project to for the feature maps of the backbone.
fusion_hidden_size (`int`, *optional*, defaults to 256):
The number of channels before fusion.
head_in_index (`int`, *optional*, defaults to -1):
The index of the features to use in the heads.
use_batch_norm_in_fusion_residual (`bool`, *optional*, defaults to `False`):
Whether to use batch normalization in the pre-activate residual units of the fusion blocks.
use_bias_in_fusion_residual (`bool`, *optional*, defaults to `True`):
Whether to use bias in the pre-activate residual units of the fusion blocks.
add_projection (`bool`, *optional*, defaults to `False`):
Whether to add a projection layer before the depth estimation head.
use_auxiliary_head (`bool`, *optional*, defaults to `True`):
Whether to use an auxiliary head during training.
auxiliary_loss_weight (`float`, *optional*, defaults to 0.4):
Weight of the cross-entropy loss of the auxiliary head.
semantic_loss_ignore_index (`int`, *optional*, defaults to 255):
The index that is ignored by the loss function of the semantic segmentation model.
semantic_classifier_dropout (`float`, *optional*, defaults to 0.1):
The dropout ratio for the semantic classification head.
backbone_featmap_shape (`List[int]`, *optional*, defaults to `[1, 1024, 24, 24]`):
Used only for the `hybrid` embedding type. The shape of the feature maps of the backbone.
neck_ignore_stages (`List[int]`, *optional*, defaults to `[0, 1]`):
Used only for the `hybrid` embedding type. The stages of the readout layers to ignore.
backbone_config (`Union[Dict[str, Any], PretrainedConfig]`, *optional*):
The configuration of the backbone model. Only used in case `is_hybrid` is `True` or in case you want to
leverage the [`AutoBackbone`] API.
backbone (`str`, *optional*):
Name of backbone to use when `backbone_config` is `None`. If `use_pretrained_backbone` is `True`, this
will load the corresponding pretrained weights from the timm or transformers library. If `use_pretrained_backbone`
is `False`, this loads the backbone's config and uses that to initialize the backbone with random weights.
use_pretrained_backbone (`bool`, *optional*, defaults to `False`):
Whether to use pretrained weights for the backbone.
use_timm_backbone (`bool`, *optional*, defaults to `False`):
Whether to load `backbone` from the timm library. If `False`, the backbone is loaded from the transformers
library.
backbone_kwargs (`dict`, *optional*):
Keyword arguments to be passed to AutoBackbone when loading from a checkpoint
e.g. `{'out_indices': (0, 1, 2, 3)}`. Cannot be specified if `backbone_config` is set.
Example:
```python
>>> from transformers import DPTModel, DPTConfig
>>> # Initializing a DPT dpt-large style configuration
>>> configuration = DPTConfig()
>>> # Initializing a model from the dpt-large style configuration
>>> model = DPTModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "dpt"
def __init__(
self,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.0,
attention_probs_dropout_prob=0.0,
initializer_range=0.02,
layer_norm_eps=1e-12,
image_size=384,
patch_size=16,
num_channels=3,
is_hybrid=False,
qkv_bias=True,
backbone_out_indices=[2, 5, 8, 11],
readout_type="project",
reassemble_factors=[4, 2, 1, 0.5],
neck_hidden_sizes=[96, 192, 384, 768],
fusion_hidden_size=256,
head_in_index=-1,
use_batch_norm_in_fusion_residual=False,
use_bias_in_fusion_residual=None,
add_projection=False,
use_auxiliary_head=True,
auxiliary_loss_weight=0.4,
semantic_loss_ignore_index=255,
semantic_classifier_dropout=0.1,
backbone_featmap_shape=[1, 1024, 24, 24],
neck_ignore_stages=[0, 1],
backbone_config=None,
backbone=None,
use_pretrained_backbone=False,
use_timm_backbone=False,
backbone_kwargs=None,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.is_hybrid = is_hybrid
if use_pretrained_backbone:
raise ValueError("Pretrained backbones are not supported yet.")
use_autobackbone = False
if self.is_hybrid:
if backbone_config is None and backbone is None:
logger.info("Initializing the config with a `BiT` backbone.")
backbone_config = {
"global_padding": "same",
"layer_type": "bottleneck",
"depths": [3, 4, 9],
"out_features": ["stage1", "stage2", "stage3"],
"embedding_dynamic_padding": True,
}
backbone_config = BitConfig(**backbone_config)
elif isinstance(backbone_config, dict):
logger.info("Initializing the config with a `BiT` backbone.")
backbone_config = BitConfig(**backbone_config)
elif isinstance(backbone_config, PretrainedConfig):
backbone_config = backbone_config
else:
raise ValueError(
f"backbone_config must be a dictionary or a `PretrainedConfig`, got {backbone_config.__class__}."
)
self.backbone_config = backbone_config
self.backbone_featmap_shape = backbone_featmap_shape
self.neck_ignore_stages = neck_ignore_stages
if readout_type != "project":
raise ValueError("Readout type must be 'project' when using `DPT-hybrid` mode.")
elif backbone_config is not None:
use_autobackbone = True
if isinstance(backbone_config, dict):
backbone_model_type = backbone_config.get("model_type")
config_class = CONFIG_MAPPING[backbone_model_type]
backbone_config = config_class.from_dict(backbone_config)
self.backbone_config = backbone_config
self.backbone_featmap_shape = None
self.neck_ignore_stages = []
else:
self.backbone_config = backbone_config
self.backbone_featmap_shape = None
self.neck_ignore_stages = []
if use_autobackbone and backbone_config is not None and backbone is not None:
raise ValueError("You can't specify both `backbone` and `backbone_config`.")
if backbone_kwargs is not None and backbone_kwargs and backbone_config is not None:
raise ValueError("You can't specify both `backbone_kwargs` and `backbone_config`.")
self.backbone = backbone
self.use_pretrained_backbone = use_pretrained_backbone
self.use_timm_backbone = use_timm_backbone
self.backbone_kwargs = backbone_kwargs
self.num_hidden_layers = None if use_autobackbone else num_hidden_layers
self.num_attention_heads = None if use_autobackbone else num_attention_heads
self.intermediate_size = None if use_autobackbone else intermediate_size
self.hidden_dropout_prob = None if use_autobackbone else hidden_dropout_prob
self.attention_probs_dropout_prob = None if use_autobackbone else attention_probs_dropout_prob
self.layer_norm_eps = None if use_autobackbone else layer_norm_eps
self.image_size = None if use_autobackbone else image_size
self.patch_size = None if use_autobackbone else patch_size
self.num_channels = None if use_autobackbone else num_channels
self.qkv_bias = None if use_autobackbone else qkv_bias
self.backbone_out_indices = None if use_autobackbone else backbone_out_indices
if readout_type not in ["ignore", "add", "project"]:
raise ValueError("Readout_type must be one of ['ignore', 'add', 'project']")
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.readout_type = readout_type
self.reassemble_factors = reassemble_factors
self.neck_hidden_sizes = neck_hidden_sizes
self.fusion_hidden_size = fusion_hidden_size
self.head_in_index = head_in_index
self.use_batch_norm_in_fusion_residual = use_batch_norm_in_fusion_residual
self.use_bias_in_fusion_residual = use_bias_in_fusion_residual
self.add_projection = add_projection
# auxiliary head attributes (semantic segmentation)
self.use_auxiliary_head = use_auxiliary_head
self.auxiliary_loss_weight = auxiliary_loss_weight
self.semantic_loss_ignore_index = semantic_loss_ignore_index
self.semantic_classifier_dropout = semantic_classifier_dropout
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default [`~PretrainedConfig.to_dict`]. Returns:
`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
if output["backbone_config"] is not None:
output["backbone_config"] = self.backbone_config.to_dict()
output["model_type"] = self.__class__.model_type
return output
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/image_processing_dpt.py
|
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for DPT."""
import math
from typing import Dict, Iterable, List, Optional, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import pad, resize, to_channel_dimension_format
from ...image_utils import (
IMAGENET_STANDARD_MEAN,
IMAGENET_STANDARD_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_scaled_image,
is_torch_available,
is_torch_tensor,
make_list_of_images,
to_numpy_array,
valid_images,
validate_kwargs,
validate_preprocess_arguments,
)
from ...utils import TensorType, is_vision_available, logging
if is_torch_available():
import torch
if is_vision_available():
import PIL
logger = logging.get_logger(__name__)
def get_resize_output_image_size(
input_image: np.ndarray,
output_size: Union[int, Iterable[int]],
keep_aspect_ratio: bool,
multiple: int,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Tuple[int, int]:
def constraint_to_multiple_of(val, multiple, min_val=0, max_val=None):
x = round(val / multiple) * multiple
if max_val is not None and x > max_val:
x = math.floor(val / multiple) * multiple
if x < min_val:
x = math.ceil(val / multiple) * multiple
return x
output_size = (output_size, output_size) if isinstance(output_size, int) else output_size
input_height, input_width = get_image_size(input_image, input_data_format)
output_height, output_width = output_size
# determine new height and width
scale_height = output_height / input_height
scale_width = output_width / input_width
if keep_aspect_ratio:
# scale as little as possible
if abs(1 - scale_width) < abs(1 - scale_height):
# fit width
scale_height = scale_width
else:
# fit height
scale_width = scale_height
new_height = constraint_to_multiple_of(scale_height * input_height, multiple=multiple)
new_width = constraint_to_multiple_of(scale_width * input_width, multiple=multiple)
return (new_height, new_width)
class DPTImageProcessor(BaseImageProcessor):
r"""
Constructs a DPT image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions. Can be overidden by `do_resize` in `preprocess`.
size (`Dict[str, int]` *optional*, defaults to `{"height": 384, "width": 384}`):
Size of the image after resizing. Can be overidden by `size` in `preprocess`.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BICUBIC`):
Defines the resampling filter to use if resizing the image. Can be overidden by `resample` in `preprocess`.
keep_aspect_ratio (`bool`, *optional*, defaults to `False`):
If `True`, the image is resized to the largest possible size such that the aspect ratio is preserved. Can
be overidden by `keep_aspect_ratio` in `preprocess`.
ensure_multiple_of (`int`, *optional*, defaults to 1):
If `do_resize` is `True`, the image is resized to a size that is a multiple of this value. Can be overidden
by `ensure_multiple_of` in `preprocess`.
do_rescale (`bool`, *optional*, defaults to `True`):
Whether to rescale the image by the specified scale `rescale_factor`. Can be overidden by `do_rescale` in
`preprocess`.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Can be overidden by `rescale_factor` in `preprocess`.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_STANDARD_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
do_pad (`bool`, *optional*, defaults to `False`):
Whether to apply center padding. This was introduced in the DINOv2 paper, which uses the model in
combination with DPT.
size_divisor (`int`, *optional*):
If `do_pad` is `True`, pads the image dimensions to be divisible by this value. This was introduced in the
DINOv2 paper, which uses the model in combination with DPT.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BICUBIC,
keep_aspect_ratio: bool = False,
ensure_multiple_of: int = 1,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: bool = False,
size_divisor: int = None,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"height": 384, "width": 384}
size = get_size_dict(size)
self.do_resize = do_resize
self.size = size
self.keep_aspect_ratio = keep_aspect_ratio
self.ensure_multiple_of = ensure_multiple_of
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_STANDARD_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_STANDARD_STD
self.do_pad = do_pad
self.size_divisor = size_divisor
self._valid_processor_keys = [
"images",
"do_resize",
"size",
"keep_aspect_ratio",
"ensure_multiple_of",
"resample",
"do_rescale",
"rescale_factor",
"do_normalize",
"image_mean",
"image_std",
"do_pad",
"size_divisor",
"return_tensors",
"data_format",
"input_data_format",
]
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
keep_aspect_ratio: bool = False,
ensure_multiple_of: int = 1,
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to target size `(size["height"], size["width"])`. If `keep_aspect_ratio` is `True`, the image
is resized to the largest possible size such that the aspect ratio is preserved. If `ensure_multiple_of` is
set, the image is resized to a size that is a multiple of this value.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Target size of the output image.
keep_aspect_ratio (`bool`, *optional*, defaults to `False`):
If `True`, the image is resized to the largest possible size such that the aspect ratio is preserved.
ensure_multiple_of (`int`, *optional*, defaults to 1):
The image is resized to a size that is a multiple of this value.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Defines the resampling filter to use if resizing the image. Otherwise, the image is resized to size
specified in `size`.
resample (`PILImageResampling`, *optional*, defaults to `PILImageResampling.BICUBIC`):
Resampling filter to use when resiizing the image.
data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the image. If not provided, it will be the same as the input image.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
size = get_size_dict(size)
if "height" not in size or "width" not in size:
raise ValueError(f"The size dictionary must contain the keys 'height' and 'width'. Got {size.keys()}")
output_size = get_resize_output_image_size(
image,
output_size=(size["height"], size["width"]),
keep_aspect_ratio=keep_aspect_ratio,
multiple=ensure_multiple_of,
input_data_format=input_data_format,
)
return resize(
image,
size=output_size,
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def pad_image(
self,
image: np.array,
size_divisor: int,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
):
"""
Center pad an image to be a multiple of `multiple`.
Args:
image (`np.ndarray`):
Image to pad.
size_divisor (`int`):
The width and height of the image will be padded to a multiple of this number.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
def _get_pad(size, size_divisor):
new_size = math.ceil(size / size_divisor) * size_divisor
pad_size = new_size - size
pad_size_left = pad_size // 2
pad_size_right = pad_size - pad_size_left
return pad_size_left, pad_size_right
if input_data_format is None:
input_data_format = infer_channel_dimension_format(image)
height, width = get_image_size(image, input_data_format)
pad_size_left, pad_size_right = _get_pad(height, size_divisor)
pad_size_top, pad_size_bottom = _get_pad(width, size_divisor)
return pad(image, ((pad_size_left, pad_size_right), (pad_size_top, pad_size_bottom)), data_format=data_format)
def preprocess(
self,
images: ImageInput,
do_resize: bool = None,
size: int = None,
keep_aspect_ratio: bool = None,
ensure_multiple_of: int = None,
resample: PILImageResampling = None,
do_rescale: bool = None,
rescale_factor: float = None,
do_normalize: bool = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: bool = None,
size_divisor: int = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> PIL.Image.Image:
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Size of the image after reszing. If `keep_aspect_ratio` is `True`, the image is resized to the largest
possible size such that the aspect ratio is preserved. If `ensure_multiple_of` is set, the image is
resized to a size that is a multiple of this value.
keep_aspect_ratio (`bool`, *optional*, defaults to `self.keep_aspect_ratio`):
Whether to keep the aspect ratio of the image. If False, the image will be resized to (size, size). If
True, the image will be resized to keep the aspect ratio and the size will be the maximum possible.
ensure_multiple_of (`int`, *optional*, defaults to `self.ensure_multiple_of`):
Ensure that the image size is a multiple of this value.
resample (`int`, *optional*, defaults to `self.resample`):
Resampling filter to use if resizing the image. This can be one of the enum `PILImageResampling`, Only
has an effect if `do_resize` is set to `True`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image values between [0 - 1].
rescale_factor (`float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to rescale the image by if `do_rescale` is set to `True`.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `ChannelDimension.LAST`: image in (height, width, num_channels) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
size = get_size_dict(size)
keep_aspect_ratio = keep_aspect_ratio if keep_aspect_ratio is not None else self.keep_aspect_ratio
ensure_multiple_of = ensure_multiple_of if ensure_multiple_of is not None else self.ensure_multiple_of
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
do_pad = do_pad if do_pad is not None else self.do_pad
size_divisor = size_divisor if size_divisor is not None else self.size_divisor
images = make_list_of_images(images)
validate_kwargs(captured_kwargs=kwargs.keys(), valid_processor_keys=self._valid_processor_keys)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
size_divisibility=size_divisor,
do_resize=do_resize,
size=size,
resample=resample,
)
# All transformations expect numpy arrays.
images = [to_numpy_array(image) for image in images]
if is_scaled_image(images[0]) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
# We assume that all images have the same channel dimension format.
input_data_format = infer_channel_dimension_format(images[0])
if do_resize:
images = [
self.resize(
image=image,
size=size,
resample=resample,
keep_aspect_ratio=keep_aspect_ratio,
ensure_multiple_of=ensure_multiple_of,
input_data_format=input_data_format,
)
for image in images
]
if do_rescale:
images = [
self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
for image in images
]
if do_normalize:
images = [
self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
for image in images
]
if do_pad:
images = [
self.pad_image(image=image, size_divisor=size_divisor, input_data_format=input_data_format)
for image in images
]
images = [
to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format) for image in images
]
data = {"pixel_values": images}
return BatchFeature(data=data, tensor_type=return_tensors)
# Copied from transformers.models.beit.image_processing_beit.BeitImageProcessor.post_process_semantic_segmentation with Beit->DPT
def post_process_semantic_segmentation(self, outputs, target_sizes: List[Tuple] = None):
"""
Converts the output of [`DPTForSemanticSegmentation`] into semantic segmentation maps. Only supports PyTorch.
Args:
outputs ([`DPTForSemanticSegmentation`]):
Raw outputs of the model.
target_sizes (`List[Tuple]` of length `batch_size`, *optional*):
List of tuples corresponding to the requested final size (height, width) of each prediction. If unset,
predictions will not be resized.
Returns:
semantic_segmentation: `List[torch.Tensor]` of length `batch_size`, where each item is a semantic
segmentation map of shape (height, width) corresponding to the target_sizes entry (if `target_sizes` is
specified). Each entry of each `torch.Tensor` correspond to a semantic class id.
"""
# TODO: add support for other frameworks
logits = outputs.logits
# Resize logits and compute semantic segmentation maps
if target_sizes is not None:
if len(logits) != len(target_sizes):
raise ValueError(
"Make sure that you pass in as many target sizes as the batch dimension of the logits"
)
if is_torch_tensor(target_sizes):
target_sizes = target_sizes.numpy()
semantic_segmentation = []
for idx in range(len(logits)):
resized_logits = torch.nn.functional.interpolate(
logits[idx].unsqueeze(dim=0), size=target_sizes[idx], mode="bilinear", align_corners=False
)
semantic_map = resized_logits[0].argmax(dim=0)
semantic_segmentation.append(semantic_map)
else:
semantic_segmentation = logits.argmax(dim=1)
semantic_segmentation = [semantic_segmentation[i] for i in range(semantic_segmentation.shape[0])]
return semantic_segmentation
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/convert_dpt_beit_to_hf.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert DPT 3.1 checkpoints from the MiDaS repository. URL: https://github.com/isl-org/MiDaS"""
import argparse
from pathlib import Path
import requests
import torch
from PIL import Image
from transformers import BeitConfig, DPTConfig, DPTForDepthEstimation, DPTImageProcessor
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def get_dpt_config(model_name):
hidden_size = 768
num_hidden_layers = 12
num_attention_heads = 12
intermediate_size = 3072
out_features = ["stage3", "stage6", "stage9", "stage12"] # beit-base-384 uses [2, 5, 8, 11]
if "large" in model_name:
hidden_size = 1024
num_hidden_layers = 24
num_attention_heads = 16
intermediate_size = 4096
out_features = ["stage6", "stage12", "stage18", "stage24"] # beit-large-512 uses [5, 11, 17, 23]
if "512" in model_name:
image_size = 512
elif "384" in model_name:
image_size = 384
else:
raise ValueError("Model not supported")
backbone_config = BeitConfig(
image_size=image_size,
num_hidden_layers=num_hidden_layers,
hidden_size=hidden_size,
intermediate_size=intermediate_size,
num_attention_heads=num_attention_heads,
use_relative_position_bias=True,
reshape_hidden_states=False,
out_features=out_features,
)
neck_hidden_sizes = [256, 512, 1024, 1024] if "large" in model_name else [96, 192, 384, 768]
config = DPTConfig(backbone_config=backbone_config, neck_hidden_sizes=neck_hidden_sizes)
return config, image_size
# here we list all keys to be renamed (original name on the left, our name on the right)
def create_rename_keys(config):
rename_keys = []
# fmt: off
# stem
rename_keys.append(("pretrained.model.cls_token", "backbone.embeddings.cls_token"))
rename_keys.append(("pretrained.model.patch_embed.proj.weight", "backbone.embeddings.patch_embeddings.projection.weight"))
rename_keys.append(("pretrained.model.patch_embed.proj.bias", "backbone.embeddings.patch_embeddings.projection.bias"))
# Transfomer encoder
for i in range(config.backbone_config.num_hidden_layers):
rename_keys.append((f"pretrained.model.blocks.{i}.gamma_1", f"backbone.encoder.layer.{i}.lambda_1"))
rename_keys.append((f"pretrained.model.blocks.{i}.gamma_2", f"backbone.encoder.layer.{i}.lambda_2"))
rename_keys.append((f"pretrained.model.blocks.{i}.norm1.weight", f"backbone.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"pretrained.model.blocks.{i}.norm1.bias", f"backbone.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append((f"pretrained.model.blocks.{i}.norm2.weight", f"backbone.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"pretrained.model.blocks.{i}.norm2.bias", f"backbone.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"pretrained.model.blocks.{i}.mlp.fc1.weight", f"backbone.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"pretrained.model.blocks.{i}.mlp.fc1.bias", f"backbone.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"pretrained.model.blocks.{i}.mlp.fc2.weight", f"backbone.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"pretrained.model.blocks.{i}.mlp.fc2.bias", f"backbone.encoder.layer.{i}.output.dense.bias"))
rename_keys.append((f"pretrained.model.blocks.{i}.attn.proj.weight", f"backbone.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"pretrained.model.blocks.{i}.attn.proj.bias", f"backbone.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"pretrained.model.blocks.{i}.attn.relative_position_bias_table", f"backbone.encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_bias_table"))
rename_keys.append((f"pretrained.model.blocks.{i}.attn.relative_position_index", f"backbone.encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_index"))
# activation postprocessing (readout projections + resize blocks)
for i in range(4):
rename_keys.append((f"pretrained.act_postprocess{i+1}.0.project.0.weight", f"neck.reassemble_stage.readout_projects.{i}.0.weight"))
rename_keys.append((f"pretrained.act_postprocess{i+1}.0.project.0.bias", f"neck.reassemble_stage.readout_projects.{i}.0.bias"))
rename_keys.append((f"pretrained.act_postprocess{i+1}.3.weight", f"neck.reassemble_stage.layers.{i}.projection.weight"))
rename_keys.append((f"pretrained.act_postprocess{i+1}.3.bias", f"neck.reassemble_stage.layers.{i}.projection.bias"))
if i != 2:
rename_keys.append((f"pretrained.act_postprocess{i+1}.4.weight", f"neck.reassemble_stage.layers.{i}.resize.weight"))
rename_keys.append((f"pretrained.act_postprocess{i+1}.4.bias", f"neck.reassemble_stage.layers.{i}.resize.bias"))
# refinenet (tricky here)
mapping = {1:3, 2:2, 3:1, 4:0}
for i in range(1, 5):
j = mapping[i]
rename_keys.append((f"scratch.refinenet{i}.out_conv.weight", f"neck.fusion_stage.layers.{j}.projection.weight"))
rename_keys.append((f"scratch.refinenet{i}.out_conv.bias", f"neck.fusion_stage.layers.{j}.projection.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv1.weight", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution1.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv1.bias", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution1.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv2.weight", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution2.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit1.conv2.bias", f"neck.fusion_stage.layers.{j}.residual_layer1.convolution2.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv1.weight", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution1.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv1.bias", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution1.bias"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv2.weight", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution2.weight"))
rename_keys.append((f"scratch.refinenet{i}.resConfUnit2.conv2.bias", f"neck.fusion_stage.layers.{j}.residual_layer2.convolution2.bias"))
# scratch convolutions
for i in range(4):
rename_keys.append((f"scratch.layer{i+1}_rn.weight", f"neck.convs.{i}.weight"))
# head
for i in range(0, 5, 2):
rename_keys.append((f"scratch.output_conv.{i}.weight", f"head.head.{i}.weight"))
rename_keys.append((f"scratch.output_conv.{i}.bias", f"head.head.{i}.bias"))
return rename_keys
def remove_ignore_keys_(state_dict):
ignore_keys = ["pretrained.model.head.weight", "pretrained.model.head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
# we split up the matrix of each encoder layer into queries, keys and values
def read_in_q_k_v(state_dict, config):
hidden_size = config.backbone_config.hidden_size
for i in range(config.backbone_config.num_hidden_layers):
# read in weights + bias of input projection layer (in original implementation, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"pretrained.model.blocks.{i}.attn.qkv.weight")
q_bias = state_dict.pop(f"pretrained.model.blocks.{i}.attn.q_bias")
v_bias = state_dict.pop(f"pretrained.model.blocks.{i}.attn.v_bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"backbone.encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[:hidden_size, :]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.query.bias"] = q_bias
state_dict[f"backbone.encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
hidden_size : hidden_size * 2, :
]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[-hidden_size:, :]
state_dict[f"backbone.encoder.layer.{i}.attention.attention.value.bias"] = v_bias
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
# We will verify our results on an image of cute cats
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
@torch.no_grad()
def convert_dpt_checkpoint(model_name, pytorch_dump_folder_path, push_to_hub):
"""
Copy/paste/tweak model's weights to our DPT structure.
"""
name_to_url = {
"dpt-beit-large-512": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_beit_large_512.pt",
"dpt-beit-large-384": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_beit_large_384.pt",
"dpt-beit-base-384": "https://github.com/isl-org/MiDaS/releases/download/v3_1/dpt_beit_base_384.pt",
}
# define DPT configuration based on URL
checkpoint_url = name_to_url[model_name]
config, image_size = get_dpt_config(model_name)
# load original state_dict from URL
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu")
# remove certain keys
remove_ignore_keys_(state_dict)
# rename keys
rename_keys = create_rename_keys(config)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
# read in qkv matrices
read_in_q_k_v(state_dict, config)
# load HuggingFace model
model = DPTForDepthEstimation(config)
missing_keys, unexpected_keys = model.load_state_dict(state_dict, strict=False)
print("Missing keys:", missing_keys)
print("Unexpected keys:", unexpected_keys)
assert missing_keys == []
# assert unexpected_keys == ["pretrained.model.fc_norm.weight", "pretrained.model.fc_norm.bias"]
model.eval()
# Check outputs on an image
# We set `keep_aspect_ratio=False` as our current BEiT does not support arbitrary window sizes
processor = DPTImageProcessor(
size={"height": image_size, "width": image_size}, keep_aspect_ratio=False, ensure_multiple_of=32
)
image = prepare_img()
pixel_values = processor(image, return_tensors="pt").pixel_values
print("First values of pixel values:", pixel_values[0, 0, :3, :3])
print("Mean of pixel values:", pixel_values.mean().item())
print("Shape of pixel values:", pixel_values.shape)
import requests
from PIL import Image
from torchvision import transforms
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
transforms = transforms.Compose(
[
transforms.Resize((image_size, image_size)),
transforms.ToTensor(),
]
)
pixel_values = transforms(image).unsqueeze(0)
# forward pass
with torch.no_grad():
outputs = model(pixel_values)
predicted_depth = outputs.predicted_depth
print("Shape of predicted depth:", predicted_depth.shape)
print("First values of predicted depth:", predicted_depth[0, :3, :3])
# assert logits
# TODO there's still a small difference with the original logits
if model_name == "dpt-beit-large-512":
# OK, checked
expected_shape = torch.Size([1, 512, 512])
expected_slice = torch.tensor(
[[2804.6260, 2792.5708, 2812.9263], [2772.0288, 2780.1118, 2796.2529], [2748.1094, 2766.6558, 2766.9834]]
)
elif model_name == "dpt-beit-large-384":
# OK, checked
expected_shape = torch.Size([1, 384, 384])
expected_slice = torch.tensor(
[[1783.2273, 1780.5729, 1792.6453], [1759.9817, 1765.5359, 1778.5002], [1739.1633, 1754.7903, 1757.1990]],
)
elif model_name == "dpt-beit-base-384":
# OK, checked
expected_shape = torch.Size([1, 384, 384])
expected_slice = torch.tensor(
[[2898.4482, 2891.3750, 2904.8079], [2858.6685, 2877.2615, 2894.4507], [2842.1235, 2854.1023, 2861.6328]],
)
assert predicted_depth.shape == torch.Size(expected_shape)
assert torch.allclose(predicted_depth[0, :3, :3], expected_slice)
print("Looks ok!")
if pytorch_dump_folder_path is not None:
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model and processor to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
processor.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing model and processor to hub...")
model.push_to_hub(repo_id=f"nielsr/{model_name}")
processor.push_to_hub(repo_id=f"nielsr/{model_name}")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_name",
default="dpt-beit-large-512",
type=str,
choices=["dpt-beit-large-512", "dpt-beit-large-384", "dpt-beit-base-384"],
help="Name of the model you'd like to convert.",
)
parser.add_argument(
"--pytorch_dump_folder_path",
default=None,
type=str,
help="Path to the output PyTorch model directory.",
)
parser.add_argument(
"--push_to_hub",
action="store_true",
help="Whether to push the model to the hub after conversion.",
)
args = parser.parse_args()
convert_dpt_checkpoint(args.model_name, args.pytorch_dump_folder_path, args.push_to_hub)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/dpt/modeling_dpt.py
|
# coding=utf-8
# Copyright 2022 Intel Labs, OpenMMLab and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch DPT (Dense Prediction Transformers) model.
This implementation is heavily inspired by OpenMMLab's implementation, found here:
https://github.com/open-mmlab/mmsegmentation/blob/master/mmseg/models/decode_heads/dpt_head.py.
"""
import collections.abc
import math
from dataclasses import dataclass
from typing import List, Optional, Set, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...file_utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from ...modeling_outputs import BaseModelOutput, DepthEstimatorOutput, SemanticSegmenterOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import ModelOutput, logging
from ...utils.backbone_utils import load_backbone
from .configuration_dpt import DPTConfig
logger = logging.get_logger(__name__)
# General docstring
_CONFIG_FOR_DOC = "DPTConfig"
# Base docstring
_CHECKPOINT_FOR_DOC = "Intel/dpt-large"
_EXPECTED_OUTPUT_SHAPE = [1, 577, 1024]
from ..deprecated._archive_maps import DPT_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
class BaseModelOutputWithIntermediateActivations(ModelOutput):
"""
Base class for model's outputs that also contains intermediate activations that can be used at later stages. Useful
in the context of Vision models.:
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
intermediate_activations (`tuple(torch.FloatTensor)`, *optional*):
Intermediate activations that can be used to compute hidden states of the model at various layers.
"""
last_hidden_states: torch.FloatTensor = None
intermediate_activations: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class BaseModelOutputWithPoolingAndIntermediateActivations(ModelOutput):
"""
Base class for model's outputs that also contains a pooling of the last hidden states as well as intermediate
activations that can be used by the model at later stages.
Args:
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (`torch.FloatTensor` of shape `(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token) after further processing
through the layers used for the auxiliary pretraining task. E.g. for BERT-family of models, this returns
the classification token after processing through a linear layer and a tanh activation function. The linear
layer weights are trained from the next sentence prediction (classification) objective during pretraining.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
intermediate_activations (`tuple(torch.FloatTensor)`, *optional*):
Intermediate activations that can be used to compute hidden states of the model at various layers.
"""
last_hidden_state: torch.FloatTensor = None
pooler_output: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
intermediate_activations: Optional[Tuple[torch.FloatTensor, ...]] = None
class DPTViTHybridEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config, feature_size=None):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.backbone = load_backbone(config)
feature_dim = self.backbone.channels[-1]
if len(self.backbone.channels) != 3:
raise ValueError(f"Expected backbone to have 3 output features, got {len(self.backbone.channels)}")
self.residual_feature_map_index = [0, 1] # Always take the output of the first and second backbone stage
if feature_size is None:
feat_map_shape = config.backbone_featmap_shape
feature_size = feat_map_shape[-2:]
feature_dim = feat_map_shape[1]
else:
feature_size = (
feature_size if isinstance(feature_size, collections.abc.Iterable) else (feature_size, feature_size)
)
feature_dim = self.backbone.channels[-1]
self.image_size = image_size
self.patch_size = patch_size[0]
self.num_channels = num_channels
self.projection = nn.Conv2d(feature_dim, hidden_size, kernel_size=1)
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.position_embeddings = nn.Parameter(torch.zeros(1, num_patches + 1, config.hidden_size))
def _resize_pos_embed(self, posemb, grid_size_height, grid_size_width, start_index=1):
posemb_tok = posemb[:, :start_index]
posemb_grid = posemb[0, start_index:]
old_grid_size = int(math.sqrt(len(posemb_grid)))
posemb_grid = posemb_grid.reshape(1, old_grid_size, old_grid_size, -1).permute(0, 3, 1, 2)
posemb_grid = nn.functional.interpolate(posemb_grid, size=(grid_size_height, grid_size_width), mode="bilinear")
posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, grid_size_height * grid_size_width, -1)
posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
return posemb
def forward(
self, pixel_values: torch.Tensor, interpolate_pos_encoding: bool = False, return_dict: bool = False
) -> torch.Tensor:
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if not interpolate_pos_encoding:
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model"
f" ({self.image_size[0]}*{self.image_size[1]})."
)
position_embeddings = self._resize_pos_embed(
self.position_embeddings, height // self.patch_size, width // self.patch_size
)
backbone_output = self.backbone(pixel_values)
features = backbone_output.feature_maps[-1]
# Retrieve also the intermediate activations to use them at later stages
output_hidden_states = [backbone_output.feature_maps[index] for index in self.residual_feature_map_index]
embeddings = self.projection(features).flatten(2).transpose(1, 2)
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
embeddings = torch.cat((cls_tokens, embeddings), dim=1)
# add positional encoding to each token
embeddings = embeddings + position_embeddings
if not return_dict:
return (embeddings, output_hidden_states)
# Return hidden states and intermediate activations
return BaseModelOutputWithIntermediateActivations(
last_hidden_states=embeddings,
intermediate_activations=output_hidden_states,
)
class DPTViTEmbeddings(nn.Module):
"""
Construct the CLS token, position and patch embeddings.
"""
def __init__(self, config):
super().__init__()
self.cls_token = nn.Parameter(torch.zeros(1, 1, config.hidden_size))
self.patch_embeddings = DPTViTPatchEmbeddings(config)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = nn.Parameter(torch.zeros(1, num_patches + 1, config.hidden_size))
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.config = config
def _resize_pos_embed(self, posemb, grid_size_height, grid_size_width, start_index=1):
posemb_tok = posemb[:, :start_index]
posemb_grid = posemb[0, start_index:]
old_grid_size = int(math.sqrt(len(posemb_grid)))
posemb_grid = posemb_grid.reshape(1, old_grid_size, old_grid_size, -1).permute(0, 3, 1, 2)
posemb_grid = nn.functional.interpolate(posemb_grid, size=(grid_size_height, grid_size_width), mode="bilinear")
posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, grid_size_height * grid_size_width, -1)
posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
return posemb
def forward(self, pixel_values, return_dict=False):
batch_size, num_channels, height, width = pixel_values.shape
# possibly interpolate position encodings to handle varying image sizes
patch_size = self.config.patch_size
position_embeddings = self._resize_pos_embed(
self.position_embeddings, height // patch_size, width // patch_size
)
embeddings = self.patch_embeddings(pixel_values)
batch_size, seq_len, _ = embeddings.size()
# add the [CLS] token to the embedded patch tokens
cls_tokens = self.cls_token.expand(batch_size, -1, -1)
embeddings = torch.cat((cls_tokens, embeddings), dim=1)
# add positional encoding to each token
embeddings = embeddings + position_embeddings
embeddings = self.dropout(embeddings)
if not return_dict:
return (embeddings,)
return BaseModelOutputWithIntermediateActivations(last_hidden_states=embeddings)
class DPTViTPatchEmbeddings(nn.Module):
"""
Image to Patch Embedding.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values):
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
embeddings = self.projection(pixel_values).flatten(2).transpose(1, 2)
return embeddings
# Copied from transformers.models.vit.modeling_vit.ViTSelfAttention with ViT->DPT
class DPTViTSelfAttention(nn.Module):
def __init__(self, config: DPTConfig) -> None:
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size,} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}."
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.key = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.value = nn.Linear(config.hidden_size, self.all_head_size, bias=config.qkv_bias)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self, hidden_states, head_mask: Optional[torch.Tensor] = None, output_attentions: bool = False
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
mixed_query_layer = self.query(hidden_states)
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTSelfOutput with ViT->DPT
class DPTViTSelfOutput(nn.Module):
"""
The residual connection is defined in DPTLayer instead of here (as is the case with other models), due to the
layernorm applied before each block.
"""
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
return hidden_states
class DPTViTAttention(nn.Module):
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.attention = DPTViTSelfAttention(config)
self.output = DPTViTSelfOutput(config)
self.pruned_heads = set()
# Copied from transformers.models.vit.modeling_vit.ViTAttention.prune_heads
def prune_heads(self, heads: Set[int]) -> None:
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.attention.num_attention_heads, self.attention.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.attention.query = prune_linear_layer(self.attention.query, index)
self.attention.key = prune_linear_layer(self.attention.key, index)
self.attention.value = prune_linear_layer(self.attention.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.attention.num_attention_heads = self.attention.num_attention_heads - len(heads)
self.attention.all_head_size = self.attention.attention_head_size * self.attention.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
# Copied from transformers.models.vit.modeling_vit.ViTAttention.forward
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_outputs = self.attention(hidden_states, head_mask, output_attentions)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.vit.modeling_vit.ViTIntermediate with ViT->DPT
class DPTViTIntermediate(nn.Module):
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.vit.modeling_vit.ViTOutput with ViT->DPT
class DPTViTOutput(nn.Module):
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = hidden_states + input_tensor
return hidden_states
# copied from transformers.models.vit.modeling_vit.ViTLayer with ViTConfig->DPTConfig, ViTAttention->DPTViTAttention, ViTIntermediate->DPTViTIntermediate, ViTOutput->DPTViTOutput
class DPTViTLayer(nn.Module):
"""This corresponds to the Block class in the timm implementation."""
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = DPTViTAttention(config)
self.intermediate = DPTViTIntermediate(config)
self.output = DPTViTOutput(config)
self.layernorm_before = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.layernorm_after = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
) -> Union[Tuple[torch.Tensor, torch.Tensor], Tuple[torch.Tensor]]:
self_attention_outputs = self.attention(
self.layernorm_before(hidden_states), # in ViT, layernorm is applied before self-attention
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
# first residual connection
hidden_states = attention_output + hidden_states
# in ViT, layernorm is also applied after self-attention
layer_output = self.layernorm_after(hidden_states)
layer_output = self.intermediate(layer_output)
# second residual connection is done here
layer_output = self.output(layer_output, hidden_states)
outputs = (layer_output,) + outputs
return outputs
# copied from transformers.models.vit.modeling_vit.ViTEncoder with ViTConfig -> DPTConfig, ViTLayer->DPTViTLayer
class DPTViTEncoder(nn.Module):
def __init__(self, config: DPTConfig) -> None:
super().__init__()
self.config = config
self.layer = nn.ModuleList([DPTViTLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
head_mask: Optional[torch.Tensor] = None,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
) -> Union[tuple, BaseModelOutput]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
layer_head_mask,
output_attentions,
)
else:
layer_outputs = layer_module(hidden_states, layer_head_mask, output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class DPTReassembleStage(nn.Module):
"""
This class reassembles the hidden states of the backbone into image-like feature representations at various
resolutions.
This happens in 3 stages:
1. Map the N + 1 tokens to a set of N tokens, by taking into account the readout ([CLS]) token according to
`config.readout_type`.
2. Project the channel dimension of the hidden states according to `config.neck_hidden_sizes`.
3. Resizing the spatial dimensions (height, width).
Args:
config (`[DPTConfig]`):
Model configuration class defining the model architecture.
"""
def __init__(self, config):
super().__init__()
self.config = config
self.layers = nn.ModuleList()
if config.is_hybrid:
self._init_reassemble_dpt_hybrid(config)
else:
self._init_reassemble_dpt(config)
self.neck_ignore_stages = config.neck_ignore_stages
def _init_reassemble_dpt_hybrid(self, config):
r""" "
For DPT-Hybrid the first 2 reassemble layers are set to `nn.Identity()`, please check the official
implementation: https://github.com/isl-org/DPT/blob/f43ef9e08d70a752195028a51be5e1aff227b913/dpt/vit.py#L438
for more details.
"""
for i, factor in zip(range(len(config.neck_hidden_sizes)), config.reassemble_factors):
if i <= 1:
self.layers.append(nn.Identity())
elif i > 1:
self.layers.append(DPTReassembleLayer(config, channels=config.neck_hidden_sizes[i], factor=factor))
if config.readout_type != "project":
raise ValueError(f"Readout type {config.readout_type} is not supported for DPT-Hybrid.")
# When using DPT-Hybrid the readout type is set to "project". The sanity check is done on the config file
self.readout_projects = nn.ModuleList()
hidden_size = _get_backbone_hidden_size(config)
for i in range(len(config.neck_hidden_sizes)):
if i <= 1:
self.readout_projects.append(nn.Sequential(nn.Identity()))
elif i > 1:
self.readout_projects.append(
nn.Sequential(nn.Linear(2 * hidden_size, hidden_size), ACT2FN[config.hidden_act])
)
def _init_reassemble_dpt(self, config):
for i, factor in zip(range(len(config.neck_hidden_sizes)), config.reassemble_factors):
self.layers.append(DPTReassembleLayer(config, channels=config.neck_hidden_sizes[i], factor=factor))
if config.readout_type == "project":
self.readout_projects = nn.ModuleList()
hidden_size = _get_backbone_hidden_size(config)
for _ in range(len(config.neck_hidden_sizes)):
self.readout_projects.append(
nn.Sequential(nn.Linear(2 * hidden_size, hidden_size), ACT2FN[config.hidden_act])
)
def forward(self, hidden_states: List[torch.Tensor], patch_height=None, patch_width=None) -> List[torch.Tensor]:
"""
Args:
hidden_states (`List[torch.FloatTensor]`, each of shape `(batch_size, sequence_length + 1, hidden_size)`):
List of hidden states from the backbone.
"""
out = []
for i, hidden_state in enumerate(hidden_states):
if i not in self.neck_ignore_stages:
# reshape to (batch_size, num_channels, height, width)
cls_token, hidden_state = hidden_state[:, 0], hidden_state[:, 1:]
batch_size, sequence_length, num_channels = hidden_state.shape
if patch_height is not None and patch_width is not None:
hidden_state = hidden_state.reshape(batch_size, patch_height, patch_width, num_channels)
else:
size = int(math.sqrt(sequence_length))
hidden_state = hidden_state.reshape(batch_size, size, size, num_channels)
hidden_state = hidden_state.permute(0, 3, 1, 2).contiguous()
feature_shape = hidden_state.shape
if self.config.readout_type == "project":
# reshape to (batch_size, height*width, num_channels)
hidden_state = hidden_state.flatten(2).permute((0, 2, 1))
readout = cls_token.unsqueeze(1).expand_as(hidden_state)
# concatenate the readout token to the hidden states and project
hidden_state = self.readout_projects[i](torch.cat((hidden_state, readout), -1))
# reshape back to (batch_size, num_channels, height, width)
hidden_state = hidden_state.permute(0, 2, 1).reshape(feature_shape)
elif self.config.readout_type == "add":
hidden_state = hidden_state.flatten(2) + cls_token.unsqueeze(-1)
hidden_state = hidden_state.reshape(feature_shape)
hidden_state = self.layers[i](hidden_state)
out.append(hidden_state)
return out
def _get_backbone_hidden_size(config):
if config.backbone_config is not None and config.is_hybrid is False:
return config.backbone_config.hidden_size
else:
return config.hidden_size
class DPTReassembleLayer(nn.Module):
def __init__(self, config, channels, factor):
super().__init__()
# projection
hidden_size = _get_backbone_hidden_size(config)
self.projection = nn.Conv2d(in_channels=hidden_size, out_channels=channels, kernel_size=1)
# up/down sampling depending on factor
if factor > 1:
self.resize = nn.ConvTranspose2d(channels, channels, kernel_size=factor, stride=factor, padding=0)
elif factor == 1:
self.resize = nn.Identity()
elif factor < 1:
# so should downsample
self.resize = nn.Conv2d(channels, channels, kernel_size=3, stride=int(1 / factor), padding=1)
def forward(self, hidden_state):
hidden_state = self.projection(hidden_state)
hidden_state = self.resize(hidden_state)
return hidden_state
class DPTFeatureFusionStage(nn.Module):
def __init__(self, config):
super().__init__()
self.layers = nn.ModuleList()
for _ in range(len(config.neck_hidden_sizes)):
self.layers.append(DPTFeatureFusionLayer(config))
def forward(self, hidden_states):
# reversing the hidden_states, we start from the last
hidden_states = hidden_states[::-1]
fused_hidden_states = []
# first layer only uses the last hidden_state
fused_hidden_state = self.layers[0](hidden_states[0])
fused_hidden_states.append(fused_hidden_state)
# looping from the last layer to the second
for hidden_state, layer in zip(hidden_states[1:], self.layers[1:]):
fused_hidden_state = layer(fused_hidden_state, hidden_state)
fused_hidden_states.append(fused_hidden_state)
return fused_hidden_states
class DPTPreActResidualLayer(nn.Module):
"""
ResidualConvUnit, pre-activate residual unit.
Args:
config (`[DPTConfig]`):
Model configuration class defining the model architecture.
"""
def __init__(self, config):
super().__init__()
self.use_batch_norm = config.use_batch_norm_in_fusion_residual
use_bias_in_fusion_residual = (
config.use_bias_in_fusion_residual
if config.use_bias_in_fusion_residual is not None
else not self.use_batch_norm
)
self.activation1 = nn.ReLU()
self.convolution1 = nn.Conv2d(
config.fusion_hidden_size,
config.fusion_hidden_size,
kernel_size=3,
stride=1,
padding=1,
bias=use_bias_in_fusion_residual,
)
self.activation2 = nn.ReLU()
self.convolution2 = nn.Conv2d(
config.fusion_hidden_size,
config.fusion_hidden_size,
kernel_size=3,
stride=1,
padding=1,
bias=use_bias_in_fusion_residual,
)
if self.use_batch_norm:
self.batch_norm1 = nn.BatchNorm2d(config.fusion_hidden_size)
self.batch_norm2 = nn.BatchNorm2d(config.fusion_hidden_size)
def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
residual = hidden_state
hidden_state = self.activation1(hidden_state)
hidden_state = self.convolution1(hidden_state)
if self.use_batch_norm:
hidden_state = self.batch_norm1(hidden_state)
hidden_state = self.activation2(hidden_state)
hidden_state = self.convolution2(hidden_state)
if self.use_batch_norm:
hidden_state = self.batch_norm2(hidden_state)
return hidden_state + residual
class DPTFeatureFusionLayer(nn.Module):
"""Feature fusion layer, merges feature maps from different stages.
Args:
config (`[DPTConfig]`):
Model configuration class defining the model architecture.
align_corners (`bool`, *optional*, defaults to `True`):
The align_corner setting for bilinear upsample.
"""
def __init__(self, config, align_corners=True):
super().__init__()
self.align_corners = align_corners
self.projection = nn.Conv2d(config.fusion_hidden_size, config.fusion_hidden_size, kernel_size=1, bias=True)
self.residual_layer1 = DPTPreActResidualLayer(config)
self.residual_layer2 = DPTPreActResidualLayer(config)
def forward(self, hidden_state, residual=None):
if residual is not None:
if hidden_state.shape != residual.shape:
residual = nn.functional.interpolate(
residual, size=(hidden_state.shape[2], hidden_state.shape[3]), mode="bilinear", align_corners=False
)
hidden_state = hidden_state + self.residual_layer1(residual)
hidden_state = self.residual_layer2(hidden_state)
hidden_state = nn.functional.interpolate(
hidden_state, scale_factor=2, mode="bilinear", align_corners=self.align_corners
)
hidden_state = self.projection(hidden_state)
return hidden_state
class DPTPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = DPTConfig
base_model_prefix = "dpt"
main_input_name = "pixel_values"
supports_gradient_checkpointing = True
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Conv2d, nn.ConvTranspose2d)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
DPT_START_DOCSTRING = r"""
This model is a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. Use it
as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config ([`ViTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
DPT_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`AutoImageProcessor`]. See [`DPTImageProcessor.__call__`]
for details.
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare DPT Model transformer outputting raw hidden-states without any specific head on top.",
DPT_START_DOCSTRING,
)
class DPTModel(DPTPreTrainedModel):
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
# vit encoder
if config.is_hybrid:
self.embeddings = DPTViTHybridEmbeddings(config)
else:
self.embeddings = DPTViTEmbeddings(config)
self.encoder = DPTViTEncoder(config)
self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.pooler = DPTViTPooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
if self.config.is_hybrid:
return self.embeddings
else:
return self.embeddings.patch_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(DPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndIntermediateActivations,
config_class=_CONFIG_FOR_DOC,
modality="vision",
expected_output=_EXPECTED_OUTPUT_SHAPE,
)
def forward(
self,
pixel_values: torch.FloatTensor,
head_mask: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutputWithPoolingAndIntermediateActivations]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(pixel_values, return_dict=return_dict)
embedding_last_hidden_states = embedding_output[0] if not return_dict else embedding_output.last_hidden_states
encoder_outputs = self.encoder(
embedding_last_hidden_states,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
sequence_output = self.layernorm(sequence_output)
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
head_outputs = (sequence_output, pooled_output) if pooled_output is not None else (sequence_output,)
return head_outputs + encoder_outputs[1:] + embedding_output[1:]
return BaseModelOutputWithPoolingAndIntermediateActivations(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
intermediate_activations=embedding_output.intermediate_activations,
)
# Copied from transformers.models.vit.modeling_vit.ViTPooler with ViT->DPT
class DPTViTPooler(nn.Module):
def __init__(self, config: DPTConfig):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class DPTNeck(nn.Module):
"""
DPTNeck. A neck is a module that is normally used between the backbone and the head. It takes a list of tensors as
input and produces another list of tensors as output. For DPT, it includes 2 stages:
* DPTReassembleStage
* DPTFeatureFusionStage.
Args:
config (dict): config dict.
"""
def __init__(self, config):
super().__init__()
self.config = config
# postprocessing: only required in case of a non-hierarchical backbone (e.g. ViT, BEiT)
if config.backbone_config is not None and config.backbone_config.model_type in ["swinv2"]:
self.reassemble_stage = None
else:
self.reassemble_stage = DPTReassembleStage(config)
self.convs = nn.ModuleList()
for channel in config.neck_hidden_sizes:
self.convs.append(nn.Conv2d(channel, config.fusion_hidden_size, kernel_size=3, padding=1, bias=False))
# fusion
self.fusion_stage = DPTFeatureFusionStage(config)
def forward(self, hidden_states: List[torch.Tensor], patch_height=None, patch_width=None) -> List[torch.Tensor]:
"""
Args:
hidden_states (`List[torch.FloatTensor]`, each of shape `(batch_size, sequence_length, hidden_size)` or `(batch_size, hidden_size, height, width)`):
List of hidden states from the backbone.
"""
if not isinstance(hidden_states, (tuple, list)):
raise ValueError("hidden_states should be a tuple or list of tensors")
if len(hidden_states) != len(self.config.neck_hidden_sizes):
raise ValueError("The number of hidden states should be equal to the number of neck hidden sizes.")
# postprocess hidden states
if self.reassemble_stage is not None:
hidden_states = self.reassemble_stage(hidden_states, patch_height, patch_width)
features = [self.convs[i](feature) for i, feature in enumerate(hidden_states)]
# fusion blocks
output = self.fusion_stage(features)
return output
class DPTDepthEstimationHead(nn.Module):
"""
Output head head consisting of 3 convolutional layers. It progressively halves the feature dimension and upsamples
the predictions to the input resolution after the first convolutional layer (details can be found in the paper's
supplementary material).
"""
def __init__(self, config):
super().__init__()
self.config = config
self.projection = None
if config.add_projection:
self.projection = nn.Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
features = config.fusion_hidden_size
self.head = nn.Sequential(
nn.Conv2d(features, features // 2, kernel_size=3, stride=1, padding=1),
nn.Upsample(scale_factor=2, mode="bilinear", align_corners=True),
nn.Conv2d(features // 2, 32, kernel_size=3, stride=1, padding=1),
nn.ReLU(),
nn.Conv2d(32, 1, kernel_size=1, stride=1, padding=0),
nn.ReLU(),
)
def forward(self, hidden_states: List[torch.Tensor]) -> torch.Tensor:
# use last features
hidden_states = hidden_states[self.config.head_in_index]
if self.projection is not None:
hidden_states = self.projection(hidden_states)
hidden_states = nn.ReLU()(hidden_states)
predicted_depth = self.head(hidden_states)
predicted_depth = predicted_depth.squeeze(dim=1)
return predicted_depth
@add_start_docstrings(
"""
DPT Model with a depth estimation head on top (consisting of 3 convolutional layers) e.g. for KITTI, NYUv2.
""",
DPT_START_DOCSTRING,
)
class DPTForDepthEstimation(DPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.backbone = None
if config.is_hybrid or config.backbone_config is None:
self.dpt = DPTModel(config, add_pooling_layer=False)
else:
self.backbone = load_backbone(config)
# Neck
self.neck = DPTNeck(config)
# Depth estimation head
self.head = DPTDepthEstimationHead(config)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=DepthEstimatorOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: torch.FloatTensor,
head_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], DepthEstimatorOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, height, width)`, *optional*):
Ground truth depth estimation maps for computing the loss.
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, DPTForDepthEstimation
>>> import torch
>>> import numpy as np
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("Intel/dpt-large")
>>> model = DPTForDepthEstimation.from_pretrained("Intel/dpt-large")
>>> # prepare image for the model
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> with torch.no_grad():
... outputs = model(**inputs)
... predicted_depth = outputs.predicted_depth
>>> # interpolate to original size
>>> prediction = torch.nn.functional.interpolate(
... predicted_depth.unsqueeze(1),
... size=image.size[::-1],
... mode="bicubic",
... align_corners=False,
... )
>>> # visualize the prediction
>>> output = prediction.squeeze().cpu().numpy()
>>> formatted = (output * 255 / np.max(output)).astype("uint8")
>>> depth = Image.fromarray(formatted)
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
if self.backbone is not None:
outputs = self.backbone.forward_with_filtered_kwargs(
pixel_values, output_hidden_states=output_hidden_states, output_attentions=output_attentions
)
hidden_states = outputs.feature_maps
else:
outputs = self.dpt(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=True, # we need the intermediate hidden states
return_dict=return_dict,
)
hidden_states = outputs.hidden_states if return_dict else outputs[1]
# only keep certain features based on config.backbone_out_indices
# note that the hidden_states also include the initial embeddings
if not self.config.is_hybrid:
hidden_states = [
feature for idx, feature in enumerate(hidden_states[1:]) if idx in self.config.backbone_out_indices
]
else:
backbone_hidden_states = outputs.intermediate_activations if return_dict else list(outputs[-1])
backbone_hidden_states.extend(
feature
for idx, feature in enumerate(hidden_states[1:])
if idx in self.config.backbone_out_indices[2:]
)
hidden_states = backbone_hidden_states
patch_height, patch_width = None, None
if self.config.backbone_config is not None and self.config.is_hybrid is False:
_, _, height, width = pixel_values.shape
patch_size = self.config.backbone_config.patch_size
patch_height = height // patch_size
patch_width = width // patch_size
hidden_states = self.neck(hidden_states, patch_height, patch_width)
predicted_depth = self.head(hidden_states)
loss = None
if labels is not None:
raise NotImplementedError("Training is not implemented yet")
if not return_dict:
if output_hidden_states:
output = (predicted_depth,) + outputs[1:]
else:
output = (predicted_depth,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return DepthEstimatorOutput(
loss=loss,
predicted_depth=predicted_depth,
hidden_states=outputs.hidden_states if output_hidden_states else None,
attentions=outputs.attentions,
)
class DPTSemanticSegmentationHead(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
features = config.fusion_hidden_size
self.head = nn.Sequential(
nn.Conv2d(features, features, kernel_size=3, padding=1, bias=False),
nn.BatchNorm2d(features),
nn.ReLU(),
nn.Dropout(config.semantic_classifier_dropout),
nn.Conv2d(features, config.num_labels, kernel_size=1),
nn.Upsample(scale_factor=2, mode="bilinear", align_corners=True),
)
def forward(self, hidden_states: List[torch.Tensor]) -> torch.Tensor:
# use last features
hidden_states = hidden_states[self.config.head_in_index]
logits = self.head(hidden_states)
return logits
class DPTAuxiliaryHead(nn.Module):
def __init__(self, config):
super().__init__()
features = config.fusion_hidden_size
self.head = nn.Sequential(
nn.Conv2d(features, features, kernel_size=3, padding=1, bias=False),
nn.BatchNorm2d(features),
nn.ReLU(),
nn.Dropout(0.1, False),
nn.Conv2d(features, config.num_labels, kernel_size=1),
)
def forward(self, hidden_states):
logits = self.head(hidden_states)
return logits
@add_start_docstrings(
"""
DPT Model with a semantic segmentation head on top e.g. for ADE20k, CityScapes.
""",
DPT_START_DOCSTRING,
)
class DPTForSemanticSegmentation(DPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.dpt = DPTModel(config, add_pooling_layer=False)
# Neck
self.neck = DPTNeck(config)
# Segmentation head(s)
self.head = DPTSemanticSegmentationHead(config)
self.auxiliary_head = DPTAuxiliaryHead(config) if config.use_auxiliary_head else None
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(DPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=SemanticSegmenterOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SemanticSegmenterOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, height, width)`, *optional*):
Ground truth semantic segmentation maps for computing the loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels > 1`, a classification loss is computed (Cross-Entropy).
Returns:
Examples:
```python
>>> from transformers import AutoImageProcessor, DPTForSemanticSegmentation
>>> from PIL import Image
>>> import requests
>>> url = "http://images.cocodataset.org/val2017/000000039769.jpg"
>>> image = Image.open(requests.get(url, stream=True).raw)
>>> image_processor = AutoImageProcessor.from_pretrained("Intel/dpt-large-ade")
>>> model = DPTForSemanticSegmentation.from_pretrained("Intel/dpt-large-ade")
>>> inputs = image_processor(images=image, return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
outputs = self.dpt(
pixel_values,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=True, # we need the intermediate hidden states
return_dict=return_dict,
)
hidden_states = outputs.hidden_states if return_dict else outputs[1]
# only keep certain features based on config.backbone_out_indices
# note that the hidden_states also include the initial embeddings
if not self.config.is_hybrid:
hidden_states = [
feature for idx, feature in enumerate(hidden_states[1:]) if idx in self.config.backbone_out_indices
]
else:
backbone_hidden_states = outputs.intermediate_activations if return_dict else list(outputs[-1])
backbone_hidden_states.extend(
feature for idx, feature in enumerate(hidden_states[1:]) if idx in self.config.backbone_out_indices[2:]
)
hidden_states = backbone_hidden_states
hidden_states = self.neck(hidden_states=hidden_states)
logits = self.head(hidden_states)
auxiliary_logits = None
if self.auxiliary_head is not None:
auxiliary_logits = self.auxiliary_head(hidden_states[-1])
loss = None
if labels is not None:
if self.config.num_labels == 1:
raise ValueError("The number of labels should be greater than one")
else:
# upsample logits to the images' original size
upsampled_logits = nn.functional.interpolate(
logits, size=labels.shape[-2:], mode="bilinear", align_corners=False
)
if auxiliary_logits is not None:
upsampled_auxiliary_logits = nn.functional.interpolate(
auxiliary_logits, size=labels.shape[-2:], mode="bilinear", align_corners=False
)
# compute weighted loss
loss_fct = CrossEntropyLoss(ignore_index=self.config.semantic_loss_ignore_index)
main_loss = loss_fct(upsampled_logits, labels)
auxiliary_loss = loss_fct(upsampled_auxiliary_logits, labels)
loss = main_loss + self.config.auxiliary_loss_weight * auxiliary_loss
if not return_dict:
if output_hidden_states:
output = (logits,) + outputs[1:]
else:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SemanticSegmenterOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states if output_hidden_states else None,
attentions=outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/configuration_openai.py
|
# coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" OpenAI GPT configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import OPENAI_GPT_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class OpenAIGPTConfig(PretrainedConfig):
"""
This is the configuration class to store the configuration of a [`OpenAIGPTModel`] or a [`TFOpenAIGPTModel`]. It is
used to instantiate a GPT model according to the specified arguments, defining the model architecture.
Instantiating a configuration with the defaults will yield a similar configuration to that of the GPT
[openai-community/openai-gpt](https://huggingface.co/openai-community/openai-gpt) architecture from OpenAI.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 40478):
Vocabulary size of the GPT-2 model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`OpenAIGPTModel`] or [`TFOpenAIGPTModel`].
n_positions (`int`, *optional*, defaults to 512):
The maximum sequence length that this model might ever be used with. Typically set this to something large
just in case (e.g., 512 or 1024 or 2048).
n_embd (`int`, *optional*, defaults to 768):
Dimensionality of the embeddings and hidden states.
n_layer (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
n_head (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
afn (`str` or `Callable`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string) in the encoder and pooler. If string, `"gelu"`,
`"relu"`, `"silu"` and `"gelu_new"` are supported.
resid_pdrop (`float`, *optional*, defaults to 0.1):
The dropout probability for all fully connected layers in the embeddings, encoder, and pooler.
embd_pdrop (`int`, *optional*, defaults to 0.1):
The dropout ratio for the embeddings.
attn_pdrop (`float`, *optional*, defaults to 0.1):
The dropout ratio for the attention.
layer_norm_epsilon (`float`, *optional*, defaults to 1e-05):
The epsilon to use in the layer normalization layers
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
summary_type (`str`, *optional*, defaults to `"cls_index"`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Has to be one of the following options:
- `"last"`: Take the last token hidden state (like XLNet).
- `"first"`: Take the first token hidden state (like BERT).
- `"mean"`: Take the mean of all tokens hidden states.
- `"cls_index"`: Supply a Tensor of classification token position (like GPT/GPT-2).
- `"attn"`: Not implemented now, use multi-head attention.
summary_use_proj (`bool`, *optional*, defaults to `True`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Whether or not to add a projection after the vector extraction.
summary_activation (`str`, *optional*):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Pass `"tanh"` for a tanh activation to the output, any other value will result in no activation.
summary_proj_to_labels (`bool`, *optional*, defaults to `True`):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
Whether the projection outputs should have `config.num_labels` or `config.hidden_size` classes.
summary_first_dropout (`float`, *optional*, defaults to 0.1):
Argument used when doing sequence summary, used in the models [`OpenAIGPTDoubleHeadsModel`] and
[`OpenAIGPTDoubleHeadsModel`].
The dropout ratio to be used after the projection and activation.
Examples:
```python
>>> from transformers import OpenAIGPTConfig, OpenAIGPTModel
>>> # Initializing a GPT configuration
>>> configuration = OpenAIGPTConfig()
>>> # Initializing a model (with random weights) from the configuration
>>> model = OpenAIGPTModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
```"""
model_type = "openai-gpt"
attribute_map = {
"max_position_embeddings": "n_positions",
"hidden_size": "n_embd",
"num_attention_heads": "n_head",
"num_hidden_layers": "n_layer",
}
def __init__(
self,
vocab_size=40478,
n_positions=512,
n_embd=768,
n_layer=12,
n_head=12,
afn="gelu",
resid_pdrop=0.1,
embd_pdrop=0.1,
attn_pdrop=0.1,
layer_norm_epsilon=1e-5,
initializer_range=0.02,
summary_type="cls_index",
summary_use_proj=True,
summary_activation=None,
summary_proj_to_labels=True,
summary_first_dropout=0.1,
**kwargs,
):
self.vocab_size = vocab_size
self.n_positions = n_positions
self.n_embd = n_embd
self.n_layer = n_layer
self.n_head = n_head
self.afn = afn
self.resid_pdrop = resid_pdrop
self.embd_pdrop = embd_pdrop
self.attn_pdrop = attn_pdrop
self.layer_norm_epsilon = layer_norm_epsilon
self.initializer_range = initializer_range
self.summary_type = summary_type
self.summary_use_proj = summary_use_proj
self.summary_activation = summary_activation
self.summary_first_dropout = summary_first_dropout
self.summary_proj_to_labels = summary_proj_to_labels
super().__init__(**kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/tokenization_openai_fast.py
|
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fast Tokenization classes for OpenAI GPT."""
from typing import Optional, Tuple
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_openai import OpenAIGPTTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
class OpenAIGPTTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" GPT Tokenizer (backed by HuggingFace's *tokenizers* library). Based on Byte-Pair-Encoding with
the following peculiarities:
- lower case all inputs
- uses BERT's BasicTokenizer for pre-BPE tokenization
This tokenizer inherits from [`PreTrainedTokenizerFast`] which contains most of the main methods. Users should
refer to this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = OpenAIGPTTokenizer
def __init__(self, vocab_file=None, merges_file=None, tokenizer_file=None, unk_token="<unk>", **kwargs):
super().__init__(vocab_file, merges_file, tokenizer_file=tokenizer_file, unk_token=unk_token, **kwargs)
@property
def do_lower_case(self):
return True
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/__init__.py
|
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_tokenizers_available,
is_torch_available,
)
_import_structure = {
"configuration_openai": ["OPENAI_GPT_PRETRAINED_CONFIG_ARCHIVE_MAP", "OpenAIGPTConfig"],
"tokenization_openai": ["OpenAIGPTTokenizer"],
}
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["tokenization_openai_fast"] = ["OpenAIGPTTokenizerFast"]
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_openai"] = [
"OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST",
"OpenAIGPTDoubleHeadsModel",
"OpenAIGPTForSequenceClassification",
"OpenAIGPTLMHeadModel",
"OpenAIGPTModel",
"OpenAIGPTPreTrainedModel",
"load_tf_weights_in_openai_gpt",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_openai"] = [
"TF_OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFOpenAIGPTDoubleHeadsModel",
"TFOpenAIGPTForSequenceClassification",
"TFOpenAIGPTLMHeadModel",
"TFOpenAIGPTMainLayer",
"TFOpenAIGPTModel",
"TFOpenAIGPTPreTrainedModel",
]
if TYPE_CHECKING:
from .configuration_openai import OPENAI_GPT_PRETRAINED_CONFIG_ARCHIVE_MAP, OpenAIGPTConfig
from .tokenization_openai import OpenAIGPTTokenizer
try:
if not is_tokenizers_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .tokenization_openai_fast import OpenAIGPTTokenizerFast
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_openai import (
OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST,
OpenAIGPTDoubleHeadsModel,
OpenAIGPTForSequenceClassification,
OpenAIGPTLMHeadModel,
OpenAIGPTModel,
OpenAIGPTPreTrainedModel,
load_tf_weights_in_openai_gpt,
)
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_openai import (
TF_OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST,
TFOpenAIGPTDoubleHeadsModel,
TFOpenAIGPTForSequenceClassification,
TFOpenAIGPTLMHeadModel,
TFOpenAIGPTMainLayer,
TFOpenAIGPTModel,
TFOpenAIGPTPreTrainedModel,
)
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/modeling_tf_openai.py
|
# coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 OpenAI GPT model."""
from __future__ import annotations
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFConv1D,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFSequenceSummary,
TFSharedEmbeddings,
get_initializer,
keras,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import check_embeddings_within_bounds, shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_openai import OpenAIGPTConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "openai-community/openai-gpt"
_CONFIG_FOR_DOC = "OpenAIGPTConfig"
from ..deprecated._archive_maps import TF_OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
class TFAttention(keras.layers.Layer):
def __init__(self, nx, config, scale=False, **kwargs):
super().__init__(**kwargs)
n_state = nx # in Attention: n_state=768 (nx=n_embd)
# [switch nx => n_state from Block to Attention to keep identical to TF implementation]
assert (
n_state % config.n_head == 0
), f"Hidden dimension {n_state} not dividable by number of heads {config.n_head}"
self.n_head = config.n_head
self.split_size = n_state
self.scale = scale
self.output_attentions = config.output_attentions
self.c_attn = TFConv1D(n_state * 3, nx, initializer_range=config.initializer_range, name="c_attn")
self.c_proj = TFConv1D(n_state, nx, initializer_range=config.initializer_range, name="c_proj")
self.attn_dropout = keras.layers.Dropout(config.attn_pdrop)
self.resid_dropout = keras.layers.Dropout(config.resid_pdrop)
self.n_state = n_state
self.pruned_heads = set()
def prune_heads(self, heads):
pass
@staticmethod
def causal_attention_mask(nd, ns):
"""
1's in the lower triangle, counting from the lower right corner. Same as tf.matrix_band_part(tf.ones([nd, ns]),
-1, ns-nd), but doesn't produce garbage on TPUs.
"""
i = tf.range(nd)[:, None]
j = tf.range(ns)
m = i >= j - ns + nd
return m
def _attn(self, q, k, v, attention_mask, head_mask, output_attentions, training=False):
# q, k, v have shape [batch, heads, sequence, features]
w = tf.matmul(q, k, transpose_b=True)
if self.scale:
dk = tf.cast(shape_list(k)[-1], dtype=w.dtype) # scale attention_scores
w = w / tf.math.sqrt(dk)
# w has shape [batch, heads, dst_sequence, src_sequence], where information flows from src to dst.
_, _, nd, ns = shape_list(w)
b = tf.cast(self.causal_attention_mask(nd, ns), dtype=w.dtype)
b = tf.reshape(b, [1, 1, nd, ns])
w = w * b - 1e4 * (1 - b)
if attention_mask is not None:
# Apply the attention mask
attention_mask = tf.cast(attention_mask, dtype=w.dtype)
w = w + attention_mask
w = stable_softmax(w, axis=-1)
w = self.attn_dropout(w, training=training)
# Mask heads if we want to
if head_mask is not None:
w = w * head_mask
outputs = [tf.matmul(w, v)]
if output_attentions:
outputs.append(w)
return outputs
def merge_heads(self, x):
x = tf.transpose(x, [0, 2, 1, 3])
x_shape = shape_list(x)
new_x_shape = x_shape[:-2] + [x_shape[-2] * x_shape[-1]]
return tf.reshape(x, new_x_shape)
def split_heads(self, x):
x_shape = shape_list(x)
new_x_shape = x_shape[:-1] + [self.n_head, x_shape[-1] // self.n_head]
x = tf.reshape(x, new_x_shape)
return tf.transpose(x, (0, 2, 1, 3)) # (batch, head, seq_length, head_features)
def call(self, x, attention_mask, head_mask, output_attentions, training=False):
x = self.c_attn(x)
query, key, value = tf.split(x, 3, axis=2)
query = self.split_heads(query)
key = self.split_heads(key)
value = self.split_heads(value)
attn_outputs = self._attn(query, key, value, attention_mask, head_mask, output_attentions, training=training)
a = attn_outputs[0]
a = self.merge_heads(a)
a = self.c_proj(a)
a = self.resid_dropout(a, training=training)
outputs = [a] + attn_outputs[1:]
return outputs # a, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "c_attn", None) is not None:
with tf.name_scope(self.c_attn.name):
self.c_attn.build([None, None, self.n_state * 3])
if getattr(self, "c_proj", None) is not None:
with tf.name_scope(self.c_proj.name):
self.c_proj.build([None, None, self.n_state])
class TFMLP(keras.layers.Layer):
def __init__(self, n_state, config, **kwargs):
super().__init__(**kwargs)
nx = config.n_embd
self.c_fc = TFConv1D(n_state, nx, initializer_range=config.initializer_range, name="c_fc")
self.c_proj = TFConv1D(nx, n_state, initializer_range=config.initializer_range, name="c_proj")
self.act = get_tf_activation("gelu")
self.dropout = keras.layers.Dropout(config.resid_pdrop)
self.nx = nx
self.n_state = n_state
def call(self, x, training=False):
h = self.act(self.c_fc(x))
h2 = self.c_proj(h)
h2 = self.dropout(h2, training=training)
return h2
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "c_fc", None) is not None:
with tf.name_scope(self.c_fc.name):
self.c_fc.build([None, None, self.n_state])
if getattr(self, "c_proj", None) is not None:
with tf.name_scope(self.c_proj.name):
self.c_proj.build([None, None, self.nx])
class TFBlock(keras.layers.Layer):
def __init__(self, config, scale=False, **kwargs):
super().__init__(**kwargs)
nx = config.n_embd
self.attn = TFAttention(nx, config, scale, name="attn")
self.ln_1 = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_1")
self.mlp = TFMLP(4 * nx, config, name="mlp")
self.ln_2 = keras.layers.LayerNormalization(epsilon=config.layer_norm_epsilon, name="ln_2")
self.nx = nx
def call(self, x, attention_mask, head_mask, output_attentions, training=False):
output_attn = self.attn(x, attention_mask, head_mask, output_attentions, training=training)
a = output_attn[0] # output_attn: a, (attentions)
n = self.ln_1(x + a)
m = self.mlp(n, training=training)
h = self.ln_2(n + m)
outputs = [h] + output_attn[1:]
return outputs # x, (attentions)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "attn", None) is not None:
with tf.name_scope(self.attn.name):
self.attn.build(None)
if getattr(self, "ln_1", None) is not None:
with tf.name_scope(self.ln_1.name):
self.ln_1.build([None, None, self.nx])
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
if getattr(self, "ln_2", None) is not None:
with tf.name_scope(self.ln_2.name):
self.ln_2.build([None, None, self.nx])
@keras_serializable
class TFOpenAIGPTMainLayer(keras.layers.Layer):
config_class = OpenAIGPTConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
self.config = config
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.return_dict = config.use_return_dict
self.num_hidden_layers = config.n_layer
self.n_embd = config.n_embd
self.n_positions = config.n_positions
self.initializer_range = config.initializer_range
self.tokens_embed = TFSharedEmbeddings(
config.vocab_size, config.n_embd, initializer_range=config.initializer_range, name="tokens_embed"
)
self.drop = keras.layers.Dropout(config.embd_pdrop)
self.h = [TFBlock(config, scale=True, name=f"h_._{i}") for i in range(config.n_layer)]
def build(self, input_shape=None):
with tf.name_scope("positions_embed"):
self.positions_embed = self.add_weight(
name="embeddings",
shape=[self.n_positions, self.n_embd],
initializer=get_initializer(self.initializer_range),
)
if self.built:
return
self.built = True
if getattr(self, "tokens_embed", None) is not None:
with tf.name_scope(self.tokens_embed.name):
self.tokens_embed.build(None)
if getattr(self, "h", None) is not None:
for layer in self.h:
with tf.name_scope(layer.name):
layer.build(None)
def get_input_embeddings(self):
return self.tokens_embed
def set_input_embeddings(self, value):
self.tokens_embed.weight = value
self.tokens_embed.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
raise NotImplementedError
@unpack_inputs
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = shape_list(input_ids)
input_ids = tf.reshape(input_ids, [-1, input_shape[-1]])
elif inputs_embeds is not None:
input_shape = shape_list(inputs_embeds)[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if position_ids is None:
position_ids = tf.expand_dims(tf.range(input_shape[-1]), axis=0)
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = tf.reshape(attention_mask, (input_shape[0], 1, 1, input_shape[1]))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
one_cst = tf.constant(1.0)
attention_mask = tf.cast(attention_mask, dtype=one_cst.dtype)
attention_mask = tf.multiply(tf.subtract(one_cst, attention_mask), tf.constant(-10000.0))
else:
attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.num_hidden_layers
# head_mask = tf.constant([0] * self.num_hidden_layers)
position_ids = tf.reshape(position_ids, [-1, shape_list(position_ids)[-1]])
if inputs_embeds is None:
check_embeddings_within_bounds(input_ids, self.config.vocab_size)
inputs_embeds = self.tokens_embed(input_ids, mode="embedding")
position_embeds = tf.gather(self.positions_embed, position_ids)
if token_type_ids is not None:
token_type_ids = tf.reshape(token_type_ids, [-1, shape_list(token_type_ids)[-1]])
check_embeddings_within_bounds(token_type_ids, self.config.vocab_size, "token_type_ids")
token_type_embeds = self.tokens_embed(token_type_ids, mode="embedding")
else:
token_type_embeds = 0
hidden_states = inputs_embeds + position_embeds + token_type_embeds
hidden_states = self.drop(hidden_states, training=training)
output_shape = input_shape + [shape_list(hidden_states)[-1]]
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, block in enumerate(self.h):
if output_hidden_states:
all_hidden_states = all_hidden_states + (tf.reshape(hidden_states, output_shape),)
outputs = block(
hidden_states,
attention_mask,
head_mask[i],
output_attentions,
training=training,
)
hidden_states = outputs[0]
if output_attentions:
all_attentions = all_attentions + (outputs[1],)
hidden_states = tf.reshape(hidden_states, output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if output_attentions:
# let the number of heads free (-1) so we can extract attention even after head pruning
attention_output_shape = input_shape[:-1] + [-1] + shape_list(all_attentions[0])[-2:]
all_attentions = tuple(tf.reshape(t, attention_output_shape) for t in all_attentions)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
class TFOpenAIGPTPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = OpenAIGPTConfig
base_model_prefix = "transformer"
@dataclass
class TFOpenAIGPTDoubleHeadsModelOutput(ModelOutput):
"""
Base class for outputs of models predicting if two sentences are consecutive or not.
Args:
logits (`tf.Tensor` of shape `(batch_size, num_choices, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
mc_logits (`tf.Tensor` of shape `(batch_size, num_choices)`):
Prediction scores of the multiple choice classification head (scores for each choice before SoftMax).
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: tf.Tensor = None
mc_logits: tf.Tensor = None
hidden_states: Tuple[tf.Tensor] | None = None
attentions: Tuple[tf.Tensor] | None = None
OPENAI_GPT_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model) subclass. Use it
as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage and
behavior.
<Tip>
TensorFlow models and layers in `transformers` accept two formats as input:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional argument.
The reason the second format is supported is that Keras methods prefer this format when passing inputs to models
and layers. Because of this support, when using methods like `model.fit()` things should "just work" for you - just
pass your inputs and labels in any format that `model.fit()` supports! If, however, you want to use the second
format outside of Keras methods like `fit()` and `predict()`, such as when creating your own layers or models with
the Keras `Functional` API, there are three possibilities you can use to gather all the input Tensors in the first
positional argument:
- a single Tensor with `input_ids` only and nothing else: `model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
`model([input_ids, attention_mask])` or `model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Note that when creating models and layers with
[subclassing](https://keras.io/guides/making_new_layers_and_models_via_subclassing/) then you don't need to worry
about any of this, as you can just pass inputs like you would to any other Python function!
</Tip>
Parameters:
config ([`OpenAIGPTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
OPENAI_GPT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`Numpy array` or `tf.Tensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.__call__`] and
[`PreTrainedTokenizer.encode`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`tf.Tensor` or `Numpy array` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`tf.Tensor` or `Numpy array` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple. This argument can be used in
eager mode, in graph mode the value will always be set to True.
training (`bool`, *optional*, defaults to `False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare OpenAI GPT transformer model outputting raw hidden-states without any specific head on top.",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTModel(TFOpenAIGPTPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFBaseModelOutput]:
outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTLMHeadModel(TFOpenAIGPTPreTrainedModel, TFCausalLanguageModelingLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
# OpenAIGPT does not have past caching features
self.supports_xla_generation = False
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFCausalLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFCausalLMOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.transformer.tokens_embed(hidden_states, mode="linear")
loss = None
if labels is not None:
# shift labels to the left and cut last logit token
shifted_logits = logits[:, :-1]
labels = labels[:, 1:]
loss = self.hf_compute_loss(labels, shifted_logits)
if not return_dict:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFCausalLMOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def prepare_inputs_for_generation(self, inputs, **kwargs):
return {"input_ids": inputs}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling and a multiple-choice classification head on top e.g. for
RocStories/SWAG tasks. The two heads are two linear layers. The language modeling head has its weights tied to the
input embeddings, the classification head takes as input the input of a specified classification token index in the
input sequence).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTDoubleHeadsModel(TFOpenAIGPTPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
config.num_labels = 1
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
self.multiple_choice_head = TFSequenceSummary(
config, initializer_range=config.initializer_range, name="multiple_choice_head"
)
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFOpenAIGPTDoubleHeadsModelOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
mc_token_ids: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFOpenAIGPTDoubleHeadsModelOutput]:
r"""
mc_token_ids (`tf.Tensor` or `Numpy array` of shape `(batch_size, num_choices)`, *optional*, default to index of the last token of the input):
Index of the classification token in each input sequence. Selected in the range `[0, input_ids.size(-1) -
1]`.
Return:
Examples:
```python
>>> import tensorflow as tf
>>> from transformers import AutoTokenizer, TFOpenAIGPTDoubleHeadsModel
>>> tokenizer = AutoTokenizer.from_pretrained("openai-community/openai-gpt")
>>> model = TFOpenAIGPTDoubleHeadsModel.from_pretrained("openai-community/openai-gpt")
>>> # Add a [CLS] to the vocabulary (we should train it also!)
>>> tokenizer.add_special_tokens({"cls_token": "[CLS]"})
>>> model.resize_token_embeddings(len(tokenizer)) # Update the model embeddings with the new vocabulary size
>>> print(tokenizer.cls_token_id, len(tokenizer)) # The newly token the last token of the vocabulary
>>> choices = ["Hello, my dog is cute [CLS]", "Hello, my cat is cute [CLS]"]
>>> encoding = tokenizer(choices, return_tensors="tf")
>>> inputs = {k: tf.expand_dims(v, 0) for k, v in encoding.items()}
>>> inputs["mc_token_ids"] = tf.constant(
... [inputs["input_ids"].shape[-1] - 1, inputs["input_ids"].shape[-1] - 1]
... )[
... None, :
... ] # Batch size 1
>>> outputs = model(inputs)
>>> lm_prediction_scores, mc_prediction_scores = outputs[:2]
```"""
if input_ids is not None:
input_shapes = shape_list(input_ids)
else:
input_shapes = shape_list(inputs_embeds)[:-1]
seq_length = input_shapes[-1]
flat_input_ids = tf.reshape(input_ids, (-1, seq_length)) if input_ids is not None else None
flat_attention_mask = tf.reshape(attention_mask, (-1, seq_length)) if attention_mask is not None else None
flat_token_type_ids = tf.reshape(token_type_ids, (-1, seq_length)) if token_type_ids is not None else None
flat_position_ids = tf.reshape(position_ids, (-1, seq_length)) if position_ids is not None else None
transformer_outputs = self.transformer(
flat_input_ids,
flat_attention_mask,
flat_token_type_ids,
flat_position_ids,
head_mask,
inputs_embeds,
output_attentions,
output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
hidden_states = tf.reshape(hidden_states, input_shapes + shape_list(hidden_states)[-1:])
if return_dict and output_hidden_states:
# We do this to match the slightly odd PT behaviour - the final hidden state is reshaped to rank 4 when the
# input is rank 3, but all other hidden states remain at rank-3 (with the first 2 dims merged)
all_hidden_states = transformer_outputs.hidden_states[:-1] + (hidden_states,)
else:
all_hidden_states = None
lm_logits = self.transformer.tokens_embed(hidden_states, mode="linear")
mc_logits = self.multiple_choice_head(hidden_states, mc_token_ids, training=training)
mc_logits = tf.squeeze(mc_logits, axis=-1)
if not return_dict:
return (lm_logits, mc_logits) + transformer_outputs[1:]
return TFOpenAIGPTDoubleHeadsModelOutput(
logits=lm_logits,
mc_logits=mc_logits,
hidden_states=all_hidden_states,
attentions=transformer_outputs.attentions,
)
@property
def input_signature(self):
return {
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
"mc_token_ids": tf.TensorSpec((None, None), tf.int32, name="token_type_ids"),
}
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "multiple_choice_head", None) is not None:
with tf.name_scope(self.multiple_choice_head.name):
self.multiple_choice_head.build(None)
@add_start_docstrings(
"""
The OpenAI GPT Model transformer with a sequence classification head on top (linear layer).
[`TFOpenAIGPTForSequenceClassification`] uses the last token in order to do the classification, as other causal
models (e.g. GPT-2) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each row. If
no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot guess the
padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take the last value in
each row of the batch).
""",
OPENAI_GPT_START_DOCSTRING,
)
class TFOpenAIGPTForSequenceClassification(TFOpenAIGPTPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.score = keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
name="score",
use_bias=False,
)
self.transformer = TFOpenAIGPTMainLayer(config, name="transformer")
self.config = config
@unpack_inputs
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids: TFModelInputType | None = None,
attention_mask: np.ndarray | tf.Tensor | None = None,
token_type_ids: np.ndarray | tf.Tensor | None = None,
position_ids: np.ndarray | tf.Tensor | None = None,
head_mask: np.ndarray | tf.Tensor | None = None,
inputs_embeds: np.ndarray | tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
labels: np.ndarray | tf.Tensor | None = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFSequenceClassifierOutput]:
r"""
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the cross entropy classification loss. Indices should be in `[0, ...,
config.vocab_size - 1]`.
"""
transformer_outputs = self.transformer(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
in_logits = None
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = (
tf.argmax(tf.cast(tf.math.equal(input_ids, self.config.pad_token_id), input_ids.dtype), axis=-1)
- 1
)
sequence_lengths = tf.where(sequence_lengths >= 0, sequence_lengths, input_ids.shape[-1] - 1)
in_logits = tf.gather(logits, sequence_lengths, batch_dims=1, axis=1)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
loss = None
if labels is not None:
if input_ids is not None:
batch_size, sequence_length = shape_list(input_ids)[:2]
else:
batch_size, sequence_length = shape_list(inputs_embeds)[:2]
assert (
self.config.pad_token_id is not None or batch_size == 1
), "Cannot handle batch sizes > 1 if no padding token is defined."
if not tf.is_tensor(sequence_lengths):
in_logits = logits[0:batch_size, sequence_lengths]
loss = self.hf_compute_loss(tf.reshape(labels, [-1, 1]), tf.reshape(in_logits, [-1, self.num_labels]))
pooled_logits = in_logits if in_logits is not None else logits
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "score", None) is not None:
with tf.name_scope(self.score.name):
self.score.build([None, None, self.config.n_embd])
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/modeling_openai.py
|
# coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch OpenAI GPT model."""
import json
import math
import os
from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import gelu_new, silu
from ...modeling_outputs import BaseModelOutput, CausalLMOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel, SequenceSummary
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_conv1d_layer
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_openai import OpenAIGPTConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "openai-community/openai-gpt"
_CONFIG_FOR_DOC = "OpenAIGPTConfig"
from ..deprecated._archive_maps import OPENAI_GPT_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
def load_tf_weights_in_openai_gpt(model, config, openai_checkpoint_folder_path):
"""Load tf pre-trained weights in a pytorch model (from NumPy arrays here)"""
import re
import numpy as np
if ".ckpt" in openai_checkpoint_folder_path:
openai_checkpoint_folder_path = os.path.dirname(openai_checkpoint_folder_path)
logger.info(f"Loading weights from {openai_checkpoint_folder_path}")
with open(openai_checkpoint_folder_path + "/parameters_names.json", "r", encoding="utf-8") as names_handle:
names = json.load(names_handle)
with open(openai_checkpoint_folder_path + "/params_shapes.json", "r", encoding="utf-8") as shapes_handle:
shapes = json.load(shapes_handle)
offsets = np.cumsum([np.prod(shape) for shape in shapes])
init_params = [np.load(openai_checkpoint_folder_path + f"/params_{n}.npy") for n in range(10)]
init_params = np.split(np.concatenate(init_params, 0), offsets)[:-1]
init_params = [param.reshape(shape) for param, shape in zip(init_params, shapes)]
# This was used when we had a single embedding matrix for positions and tokens
# init_params[0] = np.concatenate([init_params[1], init_params[0]], 0)
# del init_params[1]
init_params = [arr.squeeze() for arr in init_params]
# Check that the token and position embeddings weight dimensions map those of the init parameters.
if model.tokens_embed.weight.shape != init_params[1].shape:
raise ValueError(
f"tokens_embed.weight.shape: {model.tokens_embed.weight.shape} does not match init_param[1].shape:"
f" {init_params[1].shape}"
)
if model.positions_embed.weight.shape != init_params[0].shape:
raise ValueError(
f"positions_embed.weight.shape: {model.positions_embed.weight.shape} does not match init_param[0].shape:"
f" {init_params[0].shape}"
)
model.tokens_embed.weight.data = torch.from_numpy(init_params[1])
model.positions_embed.weight.data = torch.from_numpy(init_params[0])
names.pop(0)
# Pop position and token embedding arrays
init_params.pop(0)
init_params.pop(0)
for name, array in zip(names, init_params): # names[1:n_transfer], init_params[1:n_transfer]):
name = name[6:] # skip "model/"
if name[-2:] != ":0":
raise ValueError(f"Layer {name} does not end with :0")
name = name[:-2]
name = name.split("/")
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "w":
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
# Ensure that the pointer and array have compatible shapes.
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
ACT_FNS = {"relu": nn.ReLU(), "silu": silu, "gelu": gelu_new, "swish": silu}
class Attention(nn.Module):
def __init__(self, nx, n_positions, config, scale=False):
super().__init__()
n_state = nx # in Attention: n_state=768 (nx=n_embd)
# [switch nx => n_state from Block to Attention to keep identical to TF implementation]
if n_state % config.n_head != 0:
raise ValueError(f"Attention n_state shape: {n_state} must be divisible by config.n_head {config.n_head}")
self.register_buffer(
"bias",
torch.tril(torch.ones(n_positions, n_positions)).view(1, 1, n_positions, n_positions),
persistent=False,
)
self.n_head = config.n_head
self.split_size = n_state
self.scale = scale
self.c_attn = Conv1D(n_state * 3, nx)
self.c_proj = Conv1D(n_state, nx)
self.attn_dropout = nn.Dropout(config.attn_pdrop)
self.resid_dropout = nn.Dropout(config.resid_pdrop)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_head, self.split_size // self.n_head, self.pruned_heads
)
index_attn = torch.cat([index, index + self.split_size, index + (2 * self.split_size)])
# Prune conv1d layers
self.c_attn = prune_conv1d_layer(self.c_attn, index_attn, dim=1)
self.c_proj = prune_conv1d_layer(self.c_proj, index, dim=0)
# Update hyper params
self.split_size = (self.split_size // self.n_head) * (self.n_head - len(heads))
self.n_head = self.n_head - len(heads)
self.pruned_heads = self.pruned_heads.union(heads)
def _attn(self, q, k, v, attention_mask=None, head_mask=None, output_attentions=False):
w = torch.matmul(q, k)
if self.scale:
w = w / math.sqrt(v.size(-1))
# w = w * self.bias + -1e9 * (1 - self.bias) # TF implementation method: mask_attn_weights
# XD: self.b may be larger than w, so we need to crop it
b = self.bias[:, :, : w.size(-2), : w.size(-1)]
w = w * b + -1e4 * (1 - b)
if attention_mask is not None:
# Apply the attention mask
w = w + attention_mask
w = nn.functional.softmax(w, dim=-1)
w = self.attn_dropout(w)
# Mask heads if we want to
if head_mask is not None:
w = w * head_mask
outputs = [torch.matmul(w, v)]
if output_attentions:
outputs.append(w)
return outputs
def merge_heads(self, x):
x = x.permute(0, 2, 1, 3).contiguous()
new_x_shape = x.size()[:-2] + (x.size(-2) * x.size(-1),)
return x.view(*new_x_shape) # in Tensorflow implementation: fct merge_states
def split_heads(self, x, k=False):
new_x_shape = x.size()[:-1] + (self.n_head, x.size(-1) // self.n_head)
x = x.view(*new_x_shape) # in Tensorflow implementation: fct split_states
if k:
return x.permute(0, 2, 3, 1)
else:
return x.permute(0, 2, 1, 3)
def forward(self, x, attention_mask=None, head_mask=None, output_attentions=False):
x = self.c_attn(x)
query, key, value = x.split(self.split_size, dim=2)
query = self.split_heads(query)
key = self.split_heads(key, k=True)
value = self.split_heads(value)
attn_outputs = self._attn(query, key, value, attention_mask, head_mask, output_attentions)
a = attn_outputs[0]
a = self.merge_heads(a)
a = self.c_proj(a)
a = self.resid_dropout(a)
outputs = [a] + attn_outputs[1:]
return outputs # a, (attentions)
class MLP(nn.Module):
def __init__(self, n_state, config): # in MLP: n_state=3072 (4 * n_embd)
super().__init__()
nx = config.n_embd
self.c_fc = Conv1D(n_state, nx)
self.c_proj = Conv1D(nx, n_state)
self.act = ACT_FNS[config.afn]
self.dropout = nn.Dropout(config.resid_pdrop)
def forward(self, x):
h = self.act(self.c_fc(x))
h2 = self.c_proj(h)
return self.dropout(h2)
class Block(nn.Module):
def __init__(self, n_positions, config, scale=False):
super().__init__()
nx = config.n_embd
self.attn = Attention(nx, n_positions, config, scale)
self.ln_1 = nn.LayerNorm(nx, eps=config.layer_norm_epsilon)
self.mlp = MLP(4 * nx, config)
self.ln_2 = nn.LayerNorm(nx, eps=config.layer_norm_epsilon)
def forward(self, x, attention_mask=None, head_mask=None, output_attentions=False):
attn_outputs = self.attn(
x,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
)
a = attn_outputs[0]
n = self.ln_1(x + a)
m = self.mlp(n)
h = self.ln_2(n + m)
outputs = [h] + attn_outputs[1:]
return outputs
class OpenAIGPTPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = OpenAIGPTConfig
load_tf_weights = load_tf_weights_in_openai_gpt
base_model_prefix = "transformer"
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear, Conv1D)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
@dataclass
class OpenAIGPTDoubleHeadsModelOutput(ModelOutput):
"""
Base class for outputs of models predicting if two sentences are consecutive or not.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Language modeling loss.
mc_loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `mc_labels` is provided):
Multiple choice classification loss.
logits (`torch.FloatTensor` of shape `(batch_size, num_choices, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
mc_logits (`torch.FloatTensor` of shape `(batch_size, num_choices)`):
Prediction scores of the multiple choice classification head (scores for each choice before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of
shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
mc_loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
mc_logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
OPENAI_GPT_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`OpenAIGPTConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
OPENAI_GPT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`AutoTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
[What are position IDs?](../glossary#position-ids)
head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*):
Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This
is useful if you want more control over how to convert `input_ids` indices into associated vectors than the
model's internal embedding lookup matrix.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"The bare OpenAI GPT transformer model outputting raw hidden-states without any specific head on top.",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTModel(OpenAIGPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.tokens_embed = nn.Embedding(config.vocab_size, config.n_embd)
self.positions_embed = nn.Embedding(config.n_positions, config.n_embd)
self.drop = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList([Block(config.n_positions, config, scale=True) for _ in range(config.n_layer)])
self.register_buffer("position_ids", torch.arange(config.n_positions), persistent=False)
# Initialize weights and apply final processing
self.post_init()
def get_input_embeddings(self):
return self.tokens_embed
def set_input_embeddings(self, new_embeddings):
self.tokens_embed = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
for layer, heads in heads_to_prune.items():
self.h[layer].attn.prune_heads(heads)
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if position_ids is None:
# Code is different from when we had a single embedding matrix from position and token embeddings
position_ids = self.position_ids[None, : input_shape[-1]]
# Attention mask.
if attention_mask is not None:
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=next(self.parameters()).dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * torch.finfo(self.dtype).min
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.tokens_embed(input_ids)
position_embeds = self.positions_embed(position_ids)
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1))
token_type_embeds = self.tokens_embed(token_type_ids)
else:
token_type_embeds = 0
hidden_states = inputs_embeds + position_embeds + token_type_embeds
hidden_states = self.drop(hidden_states)
output_shape = input_shape + (hidden_states.size(-1),)
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
for i, block in enumerate(self.h):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = block(hidden_states, attention_mask, head_mask[i], output_attentions=output_attentions)
hidden_states = outputs[0]
if output_attentions:
all_attentions = all_attentions + (outputs[1],)
hidden_states = hidden_states.view(*output_shape)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
)
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTLMHeadModel(OpenAIGPTPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = OpenAIGPTModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], CausalLMOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-100, 0, ..., config.vocab_size]` All labels set to `-100`
are ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutput(
loss=loss,
logits=lm_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
def prepare_inputs_for_generation(self, input_ids: torch.LongTensor, **kwargs) -> Dict[str, Any]:
return {"input_ids": input_ids}
@add_start_docstrings(
"""
OpenAI GPT Model transformer with a language modeling and a multiple-choice classification head on top e.g. for
RocStories/SWAG tasks. The two heads are two linear layers. The language modeling head has its weights tied to the
input embeddings, the classification head takes as input the input of a specified classification token index in the
input sequence).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTDoubleHeadsModel(OpenAIGPTPreTrainedModel):
_tied_weights_keys = ["lm_head.weight"]
def __init__(self, config):
super().__init__(config)
config.num_labels = 1
self.transformer = OpenAIGPTModel(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
self.multiple_choice_head = SequenceSummary(config)
# Initialize weights and apply final processing
self.post_init()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=OpenAIGPTDoubleHeadsModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
mc_token_ids: Optional[torch.LongTensor] = None,
labels: Optional[torch.LongTensor] = None,
mc_labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], OpenAIGPTDoubleHeadsModelOutput]:
r"""
mc_token_ids (`torch.LongTensor` of shape `(batch_size, num_choices)`, *optional*, default to index of the last token of the input):
Index of the classification token in each input sequence. Selected in the range `[0, input_ids.size(-1) -
1]`.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
`labels = input_ids` Indices are selected in `[-1, 0, ..., config.vocab_size]` All labels set to `-100` are
ignored (masked), the loss is only computed for labels in `[0, ..., config.vocab_size]`
mc_labels (`torch.LongTensor` of shape `(batch_size)`, *optional*):
Labels for computing the multiple choice classification loss. Indices should be in `[0, ..., num_choices]`
where *num_choices* is the size of the second dimension of the input tensors. (see *input_ids* above)
Return:
Examples:
```python
>>> from transformers import AutoTokenizer, OpenAIGPTDoubleHeadsModel
>>> import torch
>>> tokenizer = AutoTokenizer.from_pretrained("openai-community/openai-gpt")
>>> model = OpenAIGPTDoubleHeadsModel.from_pretrained("openai-community/openai-gpt")
>>> tokenizer.add_special_tokens(
... {"cls_token": "[CLS]"}
... ) # Add a [CLS] to the vocabulary (we should train it also!)
>>> model.resize_token_embeddings(len(tokenizer))
>>> choices = ["Hello, my dog is cute [CLS]", "Hello, my cat is cute [CLS]"]
>>> input_ids = torch.tensor([tokenizer.encode(s) for s in choices]).unsqueeze(0) # Batch size 1, 2 choices
>>> mc_token_ids = torch.tensor([input_ids.size(-1) - 1, input_ids.size(-1) - 1]).unsqueeze(0) # Batch size 1
>>> outputs = model(input_ids, mc_token_ids=mc_token_ids)
>>> lm_logits = outputs.logits
>>> mc_logits = outputs.mc_logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
lm_logits = self.lm_head(hidden_states)
mc_logits = self.multiple_choice_head(hidden_states, mc_token_ids).squeeze(-1)
lm_loss, mc_loss = None, None
if mc_labels is not None:
loss_fct = CrossEntropyLoss()
mc_loss = loss_fct(mc_logits.view(-1, mc_logits.size(-1)), mc_labels.view(-1))
if labels is not None:
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits, mc_logits) + transformer_outputs[1:]
if mc_loss is not None:
output = (mc_loss,) + output
return ((lm_loss,) + output) if lm_loss is not None else output
return OpenAIGPTDoubleHeadsModelOutput(
loss=lm_loss,
mc_loss=mc_loss,
logits=lm_logits,
mc_logits=mc_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@add_start_docstrings(
"""
The Original OpenAI GPT Model transformer with a sequence classification head on top (linear layer).
[`OpenAIGPTForSequenceClassification`] uses the last token in order to do the classification, as other causal
models (e.g. GPT-2) do. Since it does classification on the last token, it requires to know the position of the
last token. If a `pad_token_id` is defined in the configuration, it finds the last token that is not a padding
token in each row. If no `pad_token_id` is defined, it simply takes the last value in each row of the batch. Since
it cannot guess the padding tokens when `inputs_embeds` are passed instead of `input_ids`, it does the same (take
the last value in each row of the batch).
""",
OPENAI_GPT_START_DOCSTRING,
)
class OpenAIGPTForSequenceClassification(OpenAIGPTPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = OpenAIGPTModel(config)
self.score = nn.Linear(config.n_embd, self.num_labels, bias=False)
# Initialize weights and apply final processing
self.post_init()
@add_start_docstrings_to_model_forward(OPENAI_GPT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
attention_mask: Optional[torch.FloatTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
labels: Optional[torch.LongTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
r"""
labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size, sequence_length = input_ids.shape[:2]
else:
batch_size, sequence_length = inputs_embeds.shape[:2]
# Ensure the batch size is > 1 if there is no padding.
if self.config.pad_token_id is None and batch_size != 1:
raise ValueError("Cannot handle batch sizes > 1 if no padding token is defined.")
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
# if no pad token found, use modulo instead of reverse indexing for ONNX compatibility
sequence_lengths = torch.eq(input_ids, self.config.pad_token_id).int().argmax(-1) - 1
sequence_lengths = sequence_lengths % input_ids.shape[-1]
sequence_lengths = sequence_lengths.to(logits.device)
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[range(batch_size), sequence_lengths]
loss = None
if labels is not None:
if self.config.problem_type is None:
if self.num_labels == 1:
self.config.problem_type = "regression"
elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
self.config.problem_type = "single_label_classification"
else:
self.config.problem_type = "multi_label_classification"
if self.config.problem_type == "regression":
loss_fct = MSELoss()
if self.num_labels == 1:
loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
else:
loss = loss_fct(pooled_logits, labels)
elif self.config.problem_type == "single_label_classification":
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
elif self.config.problem_type == "multi_label_classification":
loss_fct = BCEWithLogitsLoss()
loss = loss_fct(pooled_logits, labels)
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=pooled_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/tokenization_openai.py
|
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tokenization classes for OpenAI GPT."""
import json
import os
import re
import unicodedata
from typing import Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.json",
"merges_file": "merges.txt",
}
# Copied from transformers.models.bert.tokenization_bert.whitespace_tokenize
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer
class BasicTokenizer(object):
"""
Constructs a BasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (`bool`, *optional*, defaults to `True`):
Whether or not to lowercase the input when tokenizing.
never_split (`Iterable`, *optional*):
Collection of tokens which will never be split during tokenization. Only has an effect when
`do_basic_tokenize=True`
tokenize_chinese_chars (`bool`, *optional*, defaults to `True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this
[issue](https://github.com/huggingface/transformers/issues/328)).
strip_accents (`bool`, *optional*):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for `lowercase` (as in the original BERT).
do_split_on_punc (`bool`, *optional*, defaults to `True`):
In some instances we want to skip the basic punctuation splitting so that later tokenization can capture
the full context of the words, such as contractions.
"""
def __init__(
self,
do_lower_case=True,
never_split=None,
tokenize_chinese_chars=True,
strip_accents=None,
do_split_on_punc=True,
):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
self.do_split_on_punc = do_split_on_punc
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. For sub-word tokenization, see WordPieceTokenizer.
Args:
never_split (`List[str]`, *optional*)
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
[`PreTrainedTokenizer.tokenize`]) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
# prevents treating the same character with different unicode codepoints as different characters
unicode_normalized_text = unicodedata.normalize("NFC", text)
orig_tokens = whitespace_tokenize(unicode_normalized_text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if not self.do_split_on_punc or (never_split is not None and text in never_split):
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
def get_pairs(word):
"""
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length
strings)
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs
def text_standardize(text):
"""
fixes some issues the spacy tokenizer had on books corpus also does some whitespace standardization
"""
text = text.replace("—", "-")
text = text.replace("–", "-")
text = text.replace("―", "-")
text = text.replace("…", "...")
text = text.replace("´", "'")
text = re.sub(r"""(-+|~+|!+|"+|;+|\?+|\++|,+|\)+|\(+|\\+|\/+|\*+|\[+|\]+|}+|{+|\|+|_+)""", r" \1 ", text)
text = re.sub(r"\s*\n\s*", " \n ", text)
text = re.sub(r"[^\S\n]+", " ", text)
return text.strip()
class OpenAIGPTTokenizer(PreTrainedTokenizer):
"""
Construct a GPT Tokenizer. Based on Byte-Pair-Encoding with the following peculiarities:
- lowercases all inputs,
- uses `SpaCy` tokenizer and `ftfy` for pre-BPE tokenization if they are installed, fallback to BERT's
`BasicTokenizer` if not.
This tokenizer inherits from [`PreTrainedTokenizer`] which contains most of the main methods. Users should refer to
this superclass for more information regarding those methods.
Args:
vocab_file (`str`):
Path to the vocabulary file.
merges_file (`str`):
Path to the merges file.
unk_token (`str`, *optional*, defaults to `"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
model_input_names = ["input_ids", "attention_mask"]
def __init__(self, vocab_file, merges_file, unk_token="<unk>", **kwargs):
try:
import ftfy
from spacy.lang.en import English
_nlp = English()
self.nlp = _nlp.tokenizer
self.fix_text = ftfy.fix_text
except ImportError:
logger.warning("ftfy or spacy is not installed using BERT BasicTokenizer instead of SpaCy & ftfy.")
self.nlp = BasicTokenizer(do_lower_case=True)
self.fix_text = None
with open(vocab_file, encoding="utf-8") as vocab_handle:
self.encoder = json.load(vocab_handle)
self.decoder = {v: k for k, v in self.encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[1:-1]
merges = [tuple(merge.split()) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
super().__init__(unk_token=unk_token, **kwargs)
@property
def do_lower_case(self):
return True
@property
def vocab_size(self):
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def bpe(self, token):
word = tuple(token[:-1]) + (token[-1] + "</w>",)
if token in self.cache:
return self.cache[token]
pairs = get_pairs(word)
if not pairs:
return token + "</w>"
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = " ".join(word)
if word == "\n </w>":
word = "\n</w>"
self.cache[token] = word
return word
def _tokenize(self, text):
"""Tokenize a string."""
split_tokens = []
if self.fix_text is None:
# Using BERT's BasicTokenizer
text = self.nlp.tokenize(text)
for token in text:
split_tokens.extend(list(self.bpe(token).split(" ")))
else:
# Using SpaCy & ftfy (original tokenization process of OpenAI GPT)
text = self.nlp(text_standardize(self.fix_text(text)))
for token in text:
split_tokens.extend(list(self.bpe(token.text.lower()).split(" ")))
return split_tokens
def _convert_token_to_id(self, token):
"""Converts a token (str) in an id using the vocab."""
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an id in a token (BPE) using the vocab."""
return self.decoder.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
"""Converts a sequence of tokens (string) in a single string."""
out_string = "".join(tokens).replace("</w>", " ").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error(f"Vocabulary path ({save_directory}) should be a directory")
return
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
with open(vocab_file, "w", encoding="utf-8") as f:
f.write(json.dumps(self.encoder, indent=2, sort_keys=True, ensure_ascii=False) + "\n")
index = 0
with open(merge_file, "w", encoding="utf-8") as writer:
writer.write("#version: 0.2\n")
for bpe_tokens, token_index in sorted(self.bpe_ranks.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {merge_file}: BPE merge indices are not consecutive."
" Please check that the tokenizer is not corrupted!"
)
index = token_index
writer.write(" ".join(bpe_tokens) + "\n")
index += 1
return vocab_file, merge_file
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/openai/convert_openai_original_tf_checkpoint_to_pytorch.py
|
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Convert OpenAI GPT checkpoint."""
import argparse
import torch
from transformers import OpenAIGPTConfig, OpenAIGPTModel, load_tf_weights_in_openai_gpt
from transformers.utils import CONFIG_NAME, WEIGHTS_NAME, logging
logging.set_verbosity_info()
def convert_openai_checkpoint_to_pytorch(openai_checkpoint_folder_path, openai_config_file, pytorch_dump_folder_path):
# Construct model
if openai_config_file == "":
config = OpenAIGPTConfig()
else:
config = OpenAIGPTConfig.from_json_file(openai_config_file)
model = OpenAIGPTModel(config)
# Load weights from numpy
load_tf_weights_in_openai_gpt(model, config, openai_checkpoint_folder_path)
# Save pytorch-model
pytorch_weights_dump_path = pytorch_dump_folder_path + "/" + WEIGHTS_NAME
pytorch_config_dump_path = pytorch_dump_folder_path + "/" + CONFIG_NAME
print(f"Save PyTorch model to {pytorch_weights_dump_path}")
torch.save(model.state_dict(), pytorch_weights_dump_path)
print(f"Save configuration file to {pytorch_config_dump_path}")
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string())
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--openai_checkpoint_folder_path",
default=None,
type=str,
required=True,
help="Path to the TensorFlow checkpoint path.",
)
parser.add_argument(
"--pytorch_dump_folder_path", default=None, type=str, required=True, help="Path to the output PyTorch model."
)
parser.add_argument(
"--openai_config_file",
default="",
type=str,
help=(
"An optional config json file corresponding to the pre-trained OpenAI model. \n"
"This specifies the model architecture."
),
)
args = parser.parse_args()
convert_openai_checkpoint_to_pytorch(
args.openai_checkpoint_folder_path, args.openai_config_file, args.pytorch_dump_folder_path
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/modeling_tf_sam.py
|
# coding=utf-8
# Copyright 2023 The Meta AI Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
TensorFlow SAM model. This file was mostly generated by auto-translation from the PyTorch original. In the event of a
discrepancy, the original file should be regarded as the 'reference' version.
"""
from __future__ import annotations
import collections
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import ACT2FN
from ...modeling_tf_outputs import TFBaseModelOutput
from ...modeling_tf_utils import TFModelInputType, TFPreTrainedModel, keras, shape_list, unpack_inputs
from ...tf_utils import flatten, functional_layernorm
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_sam import SamConfig, SamMaskDecoderConfig, SamPromptEncoderConfig, SamVisionConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "SamConfig"
_CHECKPOINT_FOR_DOC = "facebook/sam-vit-huge"
from ..deprecated._archive_maps import TF_SAM_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
class TFSamVisionEncoderOutput(ModelOutput):
"""
Base class for sam vision model's outputs that also contains image embeddings obtained by applying the projection
layer to the pooler_output.
Args:
image_embeds (`tf.Tensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`tf.Tensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings, if the model has an embedding layer, + one for
the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
image_embeds: tf.Tensor | None = None
last_hidden_state: tf.Tensor = None
hidden_states: Tuple[tf.Tensor, ...] | None = None
attentions: Tuple[tf.Tensor, ...] | None = None
@dataclass
class TFSamImageSegmentationOutput(ModelOutput):
"""
Base class for Segment-Anything model's output
Args:
iou_scores (`tf.Tensor` of shape `(batch_size, num_masks)`):
The iou scores of the predicted masks.
pred_masks (`tf.Tensor` of shape `(batch_size, num_masks, height, width)`):
The predicted low resolutions masks. Needs to be post-processed by the processor
vision_hidden_states (`tuple(tf.Tensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `tf.Tensor` (one for the output of the embeddings, if the model has an embedding layer, + one for
the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the vision model at the output of each layer plus the optional initial embedding outputs.
vision_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
mask_decoder_attentions (`tuple(tf.Tensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `tf.Tensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
iou_scores: tf.Tensor = None
pred_masks: tf.Tensor = None
vision_hidden_states: Tuple[tf.Tensor, ...] | None = None
vision_attentions: Tuple[tf.Tensor, ...] | None = None
mask_decoder_attentions: Tuple[tf.Tensor, ...] | None = None
class TFSamPatchEmbeddings(keras.layers.Layer):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = keras.layers.Conv2D(
hidden_size, kernel_size=patch_size, strides=patch_size, name="projection"
)
def call(self, pixel_values):
batch_size, num_channels, height, width = shape_list(pixel_values)
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
embeddings = self.projection(tf.transpose(pixel_values, perm=[0, 2, 3, 1]))
return embeddings
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "projection", None) is not None:
with tf.name_scope(self.projection.name):
self.projection.build([None, None, None, self.num_channels])
class TFSamMLPBlock(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.lin1 = keras.layers.Dense(config.mlp_dim, name="lin1")
self.lin2 = keras.layers.Dense(config.hidden_size, name="lin2")
self.act = ACT2FN[config.hidden_act]
self.config = config
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.lin1(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.lin2(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "lin1", None) is not None:
with tf.name_scope(self.lin1.name):
self.lin1.build([None, None, self.config.hidden_size])
if getattr(self, "lin2", None) is not None:
with tf.name_scope(self.lin2.name):
self.lin2.build([None, None, self.config.mlp_dim])
class TFSamLayerNorm(keras.layers.Layer):
r"""LayerNorm that supports two data formats: channels_last (default) or channels_first.
The ordering of the dimensions in the inputs. channels_last corresponds to inputs with shape (batch_size, height,
width, channels) while channels_first corresponds to inputs with shape (batch_size, channels, height, width).
"""
def __init__(self, normalized_shape, eps=1e-6, data_format="channels_last", **kwargs):
super().__init__(**kwargs)
self.eps = eps
self.data_format = data_format
self.normalized_shape = normalized_shape
if self.data_format not in ["channels_last", "channels_first"]:
raise NotImplementedError(f"Unsupported data format: {self.data_format}")
def build(self, input_shape):
self.weight = self.add_weight(shape=self.normalized_shape, initializer="ones", name="weight")
self.bias = self.add_weight(shape=self.normalized_shape, initializer="zeros", name="bias")
super().build(input_shape)
def call(self, x: tf.Tensor) -> tf.Tensor:
if self.data_format == "channels_last":
x = functional_layernorm(x, weight=self.weight, bias=self.bias, epsilon=self.eps, axis=-1)
elif self.data_format == "channels_first":
x = functional_layernorm(x, weight=self.weight, bias=self.bias, epsilon=self.eps, axis=1)
return x
class TFSamAttention(keras.layers.Layer):
"""
SAM's attention layer that allows for downscaling the size of the embedding after projection to queries, keys, and
values.
"""
def __init__(self, config, downsample_rate=None, **kwargs):
super().__init__(**kwargs)
self.hidden_size = config.hidden_size
downsample_rate = config.attention_downsample_rate if downsample_rate is None else downsample_rate
self.internal_dim = config.hidden_size // downsample_rate
self.num_attention_heads = config.num_attention_heads
if self.internal_dim % config.num_attention_heads != 0:
raise ValueError("num_attention_heads must divide hidden_size.")
self.q_proj = keras.layers.Dense(self.internal_dim, name="q_proj")
self.k_proj = keras.layers.Dense(self.internal_dim, name="k_proj")
self.v_proj = keras.layers.Dense(self.internal_dim, name="v_proj")
self.out_proj = keras.layers.Dense(self.hidden_size, name="out_proj")
def _separate_heads(self, hidden_states: tf.Tensor, num_attention_heads: int) -> tf.Tensor:
batch, point_batch_size, n_tokens, channel = shape_list(hidden_states)
c_per_head = channel // num_attention_heads
hidden_states = tf.reshape(
hidden_states, (batch * point_batch_size, n_tokens, num_attention_heads, c_per_head)
)
return tf.transpose(hidden_states, perm=[0, 2, 1, 3])
def _recombine_heads(self, hidden_states: tf.Tensor, point_batch_size: int) -> tf.Tensor:
batch, n_heads, n_tokens, c_per_head = shape_list(hidden_states)
hidden_states = tf.transpose(hidden_states, perm=[0, 2, 1, 3])
return tf.reshape(
hidden_states,
(batch // tf.reduce_max([1, point_batch_size]), point_batch_size, n_tokens, n_heads * c_per_head),
)
def call(self, query: tf.Tensor, key: tf.Tensor, value: tf.Tensor) -> tf.Tensor:
# Input projections
query = self.q_proj(query)
key = self.k_proj(key)
value = self.v_proj(value)
point_batch_size = shape_list(query)[1]
# Separate into heads
query = self._separate_heads(query, self.num_attention_heads)
key = self._separate_heads(key, self.num_attention_heads)
value = self._separate_heads(value, self.num_attention_heads)
# SamAttention
_, _, _, c_per_head = shape_list(query)
attn = tf.matmul(
query, tf.transpose(key, perm=[0, 1, 3, 2])
) # batch_size * point_batch_size x N_heads x N_tokens x N_tokens
attn = attn / tf.math.sqrt(float(c_per_head))
attn = tf.nn.softmax(attn, axis=-1)
# Get output
out = tf.matmul(attn, value)
out = self._recombine_heads(out, point_batch_size)
out = self.out_proj(out)
return out
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "q_proj", None) is not None:
with tf.name_scope(self.q_proj.name):
self.q_proj.build([None, None, self.hidden_size])
if getattr(self, "k_proj", None) is not None:
with tf.name_scope(self.k_proj.name):
self.k_proj.build([None, None, self.hidden_size])
if getattr(self, "v_proj", None) is not None:
with tf.name_scope(self.v_proj.name):
self.v_proj.build([None, None, self.hidden_size])
if getattr(self, "out_proj", None) is not None:
with tf.name_scope(self.out_proj.name):
self.out_proj.build([None, None, self.internal_dim])
class TFSamTwoWayAttentionBlock(keras.layers.Layer):
def __init__(self, config, attention_downsample_rate: int = 2, skip_first_layer_pe: bool = False, **kwargs):
"""
A transformer block with four layers:
(1) self-attention of sparse inputs (2) cross attention of sparse inputs -> dense inputs (3) mlp block on
sparse inputs (4) cross attention of dense inputs -> sparse inputs
Arguments:
config (`SamMaskDecoderConfig`):
The configuration file used to instantiate the block
attention_downsample_rate (*optionalk*, int, defaults to 2):
The downsample ratio of the block used to reduce the inner dim of the attention.
skip_first_layer_pe (*optional*, bool, defaults to `False`):
Whether or not to skip the addition of the query_point_embedding on the first layer.
"""
super().__init__(**kwargs)
self.hidden_size = config.hidden_size
self.layer_norm_eps = config.layer_norm_eps
self.self_attn = TFSamAttention(config, downsample_rate=1, name="self_attn")
self.layer_norm1 = keras.layers.LayerNormalization(epsilon=self.layer_norm_eps, name="layer_norm1")
self.cross_attn_token_to_image = TFSamAttention(
config, downsample_rate=attention_downsample_rate, name="cross_attn_token_to_image"
)
self.layer_norm2 = keras.layers.LayerNormalization(epsilon=self.layer_norm_eps, name="layer_norm2")
self.mlp = TFSamMLPBlock(config, name="mlp")
self.layer_norm3 = keras.layers.LayerNormalization(epsilon=self.layer_norm_eps, name="layer_norm3")
self.layer_norm4 = keras.layers.LayerNormalization(epsilon=self.layer_norm_eps, name="layer_norm4")
self.cross_attn_image_to_token = TFSamAttention(
config, downsample_rate=attention_downsample_rate, name="cross_attn_image_to_token"
)
self.skip_first_layer_pe = skip_first_layer_pe
def call(
self,
queries: tf.Tensor,
keys: tf.Tensor,
query_point_embedding: tf.Tensor,
key_point_embedding: tf.Tensor,
output_attentions: bool = False,
):
# Self attention block
if self.skip_first_layer_pe:
queries = self.self_attn(query=queries, key=queries, value=queries)
else:
query = queries + query_point_embedding
attn_out = self.self_attn(query=query, key=query, value=queries)
queries = queries + attn_out
queries = self.layer_norm1(queries)
# Cross attention block, tokens attending to image embedding
query = queries + query_point_embedding
key = keys + key_point_embedding
attn_out = self.cross_attn_token_to_image(query=query, key=key, value=keys)
queries = queries + attn_out
queries = self.layer_norm2(queries)
# MLP block
mlp_out = self.mlp(queries)
queries = queries + mlp_out
queries = self.layer_norm3(queries)
# Cross attention block, image embedding attending to tokens
query = queries + query_point_embedding
key = keys + key_point_embedding
attn_out = self.cross_attn_image_to_token(query=key, key=query, value=queries)
keys = keys + attn_out
keys = self.layer_norm4(keys)
outputs = (queries, keys)
if output_attentions:
outputs = outputs + (attn_out,)
else:
outputs = outputs + (None,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "self_attn", None) is not None:
with tf.name_scope(self.self_attn.name):
self.self_attn.build(None)
if getattr(self, "layer_norm1", None) is not None:
with tf.name_scope(self.layer_norm1.name):
self.layer_norm1.build([None, None, None, self.hidden_size])
if getattr(self, "cross_attn_token_to_image", None) is not None:
with tf.name_scope(self.cross_attn_token_to_image.name):
self.cross_attn_token_to_image.build(None)
if getattr(self, "layer_norm2", None) is not None:
with tf.name_scope(self.layer_norm2.name):
self.layer_norm2.build([None, None, None, self.hidden_size])
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
if getattr(self, "layer_norm3", None) is not None:
with tf.name_scope(self.layer_norm3.name):
self.layer_norm3.build([None, None, None, self.hidden_size])
if getattr(self, "layer_norm4", None) is not None:
with tf.name_scope(self.layer_norm4.name):
self.layer_norm4.build([None, None, None, self.hidden_size])
if getattr(self, "cross_attn_image_to_token", None) is not None:
with tf.name_scope(self.cross_attn_image_to_token.name):
self.cross_attn_image_to_token.build(None)
class TFSamTwoWayTransformer(keras.layers.Layer):
def __init__(self, config: SamMaskDecoderConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.num_hidden_layers = config.num_hidden_layers
self.layers = []
for i in range(self.num_hidden_layers):
self.layers.append(TFSamTwoWayAttentionBlock(config, skip_first_layer_pe=(i == 0), name=f"layers_._{i}"))
self.final_attn_token_to_image = TFSamAttention(config, name="final_attn_token_to_image")
self.layer_norm_final_attn = keras.layers.LayerNormalization(
epsilon=config.layer_norm_eps, name="layer_norm_final_attn"
)
def call(
self,
point_embeddings: tf.Tensor,
image_embeddings: tf.Tensor,
image_positional_embeddings: tf.Tensor,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, TFBaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
all_attentions = ()
if image_embeddings is None:
raise ValueError("You have to specify an image_embedding")
image_embeddings = tf.transpose(flatten(image_embeddings, 2), perm=(0, 2, 1))[:, None]
image_positional_embeddings = tf.transpose(flatten(image_positional_embeddings, 2), (0, 2, 1))[:, None]
# Prepare queries
queries = point_embeddings
keys = image_embeddings
# Apply transformer blocks and final layernorm
for layer in self.layers:
queries, keys, attention_outputs = layer(
queries=queries,
keys=keys,
query_point_embedding=point_embeddings,
key_point_embedding=image_positional_embeddings,
output_attentions=output_attentions,
)
if output_attentions:
all_attentions = all_attentions + (attention_outputs,)
# Apply the final attenion layer from the points to the image
query = queries + point_embeddings
key = keys + image_positional_embeddings
attn_out = self.final_attn_token_to_image(query=query, key=key, value=keys)
queries = queries + attn_out
queries = self.layer_norm_final_attn(queries)
return queries, keys, all_attentions
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "final_attn_token_to_image", None) is not None:
with tf.name_scope(self.final_attn_token_to_image.name):
self.final_attn_token_to_image.build(None)
if getattr(self, "layer_norm_final_attn", None) is not None:
with tf.name_scope(self.layer_norm_final_attn.name):
self.layer_norm_final_attn.build([None, None, None, self.config.hidden_size])
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
class TFSamFeedForward(keras.layers.Layer):
def __init__(
self, input_dim: int, hidden_dim: int, output_dim: int, num_layers: int, sigmoid_output: bool = False, **kwargs
):
super().__init__(**kwargs)
self.num_layers = num_layers
self.activation = keras.layers.ReLU()
self.proj_in = keras.layers.Dense(hidden_dim, input_shape=(input_dim,), name="proj_in")
self.proj_out = keras.layers.Dense(output_dim, input_shape=(hidden_dim,), name="proj_out")
self.layers = [
keras.layers.Dense(hidden_dim, input_shape=(hidden_dim,), name=f"layers_._{i}")
for i in range(num_layers - 2)
]
self.sigmoid_output = sigmoid_output
self.hidden_dim = hidden_dim
self.input_dim = input_dim
def call(self, hidden_states):
hidden_states = self.proj_in(hidden_states)
hidden_states = self.activation(hidden_states)
for layer in self.layers:
hidden_states = self.activation(layer(hidden_states))
hidden_states = self.proj_out(hidden_states)
if self.sigmoid_output:
hidden_states = tf.sigmoid(hidden_states)
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "proj_in", None) is not None:
with tf.name_scope(self.proj_in.name):
self.proj_in.build([None, None, self.input_dim])
if getattr(self, "proj_out", None) is not None:
with tf.name_scope(self.proj_out.name):
self.proj_out.build([None, None, self.hidden_dim])
if getattr(self, "layers", None) is not None:
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build([None, None, self.hidden_dim])
class TFSamMaskDecoder(keras.layers.Layer):
def __init__(self, config: SamMaskDecoderConfig, **kwargs):
super().__init__(**kwargs)
self.hidden_size = config.hidden_size
self.num_multimask_outputs = config.num_multimask_outputs
self.num_mask_tokens = config.num_multimask_outputs + 1
self.transformer = TFSamTwoWayTransformer(config, name="transformer")
self.upscale_conv1 = keras.layers.Conv2DTranspose(
self.hidden_size // 4, kernel_size=2, strides=2, name="upscale_conv1", data_format="channels_first"
)
self.upscale_conv2 = keras.layers.Conv2DTranspose(
self.hidden_size // 8, kernel_size=2, strides=2, name="upscale_conv2", data_format="channels_first"
)
self.upscale_layer_norm = TFSamLayerNorm(
self.hidden_size // 4, data_format="channels_first", name="upscale_layer_norm"
)
self.activation = tf.nn.gelu
mlps_list = []
for i in range(self.num_mask_tokens):
mlps_list += [
TFSamFeedForward(
self.hidden_size,
self.hidden_size,
self.hidden_size // 8,
3,
name=f"output_hypernetworks_mlps_._{i}",
)
]
self.output_hypernetworks_mlps = mlps_list
self.iou_prediction_head = TFSamFeedForward(
self.hidden_size,
config.iou_head_hidden_dim,
self.num_mask_tokens,
config.iou_head_depth,
name="iou_prediction_head",
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
self.iou_token = self.add_weight(shape=(1, self.hidden_size), name="iou_token.weight", trainable=True)
self.mask_tokens = self.add_weight(
shape=(self.num_mask_tokens, self.hidden_size), name="mask_tokens.weight", trainable=True
)
if getattr(self, "transformer", None) is not None:
with tf.name_scope(self.transformer.name):
self.transformer.build(None)
if getattr(self, "upscale_conv1", None) is not None:
with tf.name_scope(self.upscale_conv1.name):
self.upscale_conv1.build([None, self.hidden_size, None, None])
if getattr(self, "upscale_conv2", None) is not None:
with tf.name_scope(self.upscale_conv2.name):
self.upscale_conv2.build([None, self.hidden_size // 4, None, None])
if getattr(self, "upscale_layer_norm", None) is not None:
with tf.name_scope(self.upscale_layer_norm.name):
self.upscale_layer_norm.build(None)
if getattr(self, "iou_prediction_head", None) is not None:
with tf.name_scope(self.iou_prediction_head.name):
self.iou_prediction_head.build(None)
for mlp in self.output_hypernetworks_mlps:
with tf.name_scope(mlp.name):
mlp.build(None)
def call(
self,
image_embeddings: tf.Tensor,
image_positional_embeddings: tf.Tensor,
sparse_prompt_embeddings: tf.Tensor,
dense_prompt_embeddings: tf.Tensor,
multimask_output: bool,
output_attentions: Optional[bool] = None,
) -> Tuple[tf.Tensor, tf.Tensor]:
batch_size, num_channels, height, width = shape_list(image_embeddings)
point_batch_size = tf.math.maximum(1, tf.shape(sparse_prompt_embeddings)[1])
output_tokens = tf.concat([self.iou_token, self.mask_tokens], axis=0) # Should be (1, 32) + (4, 32) = (5, 32)
output_tokens = tf.tile(
output_tokens[None, None, :], [batch_size, point_batch_size, 1, 1]
) # Should be (batch_size, point_size, 5, 32)
# Matt: The original Torch code checked that the sum of sparse_prompt_embeddings equalled 0. However, this only
# happens when the sparse prompt embeddings are an empty tensor with shape[1] == 0. I replaced
# it with an explicit shape check to avoid data-dependent control flow which breaks XLA.
if shape_list(sparse_prompt_embeddings)[1] != 0:
tokens = tf.concat((output_tokens, sparse_prompt_embeddings), axis=2)
else:
tokens = output_tokens
point_embeddings = tf.cast(tokens, self.iou_token.dtype)
image_embeddings = image_embeddings + dense_prompt_embeddings
image_embeddings = tf.repeat(image_embeddings, point_batch_size, axis=0)
image_positional_embeddings = tf.repeat(image_positional_embeddings, point_batch_size, axis=0)
point_embedding, image_embeddings, attentions = self.transformer(
point_embeddings=point_embeddings,
image_embeddings=image_embeddings,
image_positional_embeddings=image_positional_embeddings,
output_attentions=output_attentions,
)
iou_token_out = point_embedding[:, :, 0, :]
mask_tokens_out = point_embedding[:, :, 1 : (1 + self.num_mask_tokens), :]
image_embeddings = tf.transpose(image_embeddings, perm=(0, 1, 3, 2))
image_embeddings = tf.reshape(image_embeddings, [batch_size * point_batch_size, num_channels, height, width])
upscaled_embedding = self.upscale_conv1(image_embeddings)
upscaled_embedding = self.activation(self.upscale_layer_norm(upscaled_embedding))
upscaled_embedding = self.activation(self.upscale_conv2(upscaled_embedding))
hyper_in_list = []
for i in range(self.num_mask_tokens):
current_mlp = self.output_hypernetworks_mlps[i]
hyper_in_list += [current_mlp(mask_tokens_out[:, :, i, :])]
hyper_in = tf.stack(hyper_in_list, axis=2)
_, num_channels, height, width = shape_list(upscaled_embedding)
upscaled_embedding = tf.reshape(
upscaled_embedding, [batch_size, point_batch_size, num_channels, height * width]
)
masks = tf.reshape(hyper_in @ upscaled_embedding, [batch_size, point_batch_size, -1, height, width])
iou_pred = self.iou_prediction_head(iou_token_out)
if multimask_output:
mask_slice = slice(1, None)
else:
mask_slice = slice(0, 1)
masks = masks[:, :, mask_slice, :, :]
iou_pred = iou_pred[:, :, mask_slice]
outputs = (masks, iou_pred)
if output_attentions:
outputs = outputs + (attentions,)
else:
outputs = outputs + (None,)
return outputs
class TFSamPositionalEmbedding(keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.scale = config.hidden_size // 2
self.config = config
def build(self, input_shape):
# TODO Matt: What is going on here? Why is a non-trainable weight randomly initialized?
self.positional_embedding = self.add_weight(
name="positional_embedding",
shape=(2, self.config.num_pos_feats),
initializer=keras.initializers.RandomNormal(mean=0.0, stddev=self.scale),
trainable=False,
)
super().build(input_shape)
def call(self, input_coords, input_shape=None):
"""Positionally encode points that are normalized to [0,1]."""
coordinates = tf.identity(input_coords)
if input_shape is not None:
coordinates = tf.stack(
[
tf.cast(coordinates[:, :, :, 0], tf.float32) / input_shape[1],
tf.cast(coordinates[:, :, :, 1], tf.float32) / input_shape[0],
],
axis=-1,
)
# assuming coords are in [0, 1]^2 square and have d_1 x ... x d_n x 2 shape
coordinates = 2 * coordinates - 1
coordinates = tf.cast(coordinates, self.positional_embedding.dtype)
coordinates = tf.matmul(coordinates, self.positional_embedding)
coordinates = 2 * np.pi * coordinates
# outputs d_1 x ... x d_n x channel shape
return tf.concat([tf.sin(coordinates), tf.cos(coordinates)], axis=-1)
class TFSamMaskEmbedding(keras.layers.Layer):
def __init__(self, config: SamPromptEncoderConfig, **kwargs):
super().__init__(**kwargs)
self.mask_input_channels = config.mask_input_channels // 4
self.activation = ACT2FN[config.hidden_act]
self.conv1 = keras.layers.Conv2D(self.mask_input_channels, kernel_size=2, strides=2, name="conv1")
self.conv2 = keras.layers.Conv2D(config.mask_input_channels, kernel_size=2, strides=2, name="conv2")
self.conv3 = keras.layers.Conv2D(config.hidden_size, kernel_size=1, name="conv3")
self.layer_norm1 = TFSamLayerNorm(self.mask_input_channels, config.layer_norm_eps, name="layer_norm1")
self.layer_norm2 = TFSamLayerNorm(self.mask_input_channels * 4, config.layer_norm_eps, name="layer_norm2")
self.config = config
def call(self, masks):
masks = tf.transpose(masks, perm=(0, 2, 3, 1)) # Convert to channels-last
hidden_states = self.conv1(masks)
hidden_states = self.layer_norm1(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.conv2(hidden_states)
hidden_states = self.layer_norm2(hidden_states)
hidden_states = self.activation(hidden_states)
dense_embeddings = self.conv3(hidden_states)
dense_embeddings = tf.transpose(dense_embeddings, perm=(0, 3, 1, 2)) # Convert back to channels-first
return dense_embeddings
def build(self, input_shape=None):
# This class needs an explicit build method because it isn't called with the standard dummy inputs
if self.built:
return
self.built = True
with tf.name_scope("conv1"):
self.conv1.build([None, None, None, 1])
with tf.name_scope("conv2"):
self.conv2.build([None, None, None, self.mask_input_channels])
with tf.name_scope("conv3"):
self.conv3.build([None, None, None, self.mask_input_channels * 4])
with tf.name_scope("layer_norm1"):
self.layer_norm1.build([None, None, None, self.mask_input_channels])
with tf.name_scope("layer_norm2"):
self.layer_norm2.build([None, None, None, self.mask_input_channels * 4])
class TFSamPromptEncoder(keras.layers.Layer):
def __init__(self, config: SamPromptEncoderConfig, shared_patch_embedding, **kwargs):
super().__init__(**kwargs)
self.shared_embedding = shared_patch_embedding
self.mask_embed = TFSamMaskEmbedding(config, name="mask_embed")
self.no_mask_embed = None
self.image_embedding_size = (config.image_embedding_size, config.image_embedding_size)
self.input_image_size = config.image_size
self.point_embed = []
self.hidden_size = config.hidden_size
self.not_a_point_embed = None
self.config = config
def build(self, input_shape=None):
self.no_mask_embed = self.add_weight(
name="no_mask_embed.weight",
shape=(1, self.hidden_size),
initializer=keras.initializers.RandomNormal(mean=0.0, stddev=0.02),
trainable=True,
)
self.point_embed = [
self.add_weight(
name=f"point_embed_._{i}.weight",
shape=(1, self.hidden_size),
initializer=keras.initializers.RandomNormal(mean=0.0, stddev=0.02),
trainable=True,
)
for i in range(self.config.num_point_embeddings)
]
self.not_a_point_embed = self.add_weight(
name="not_a_point_embed.weight",
shape=(1, self.hidden_size),
initializer=keras.initializers.RandomNormal(mean=0.0, stddev=0.02),
trainable=True,
)
with tf.name_scope("mask_embed"):
# We must explicitly build the mask embed because it isn't touched by the standard dummy inputs
self.mask_embed.build(
(None, self.config.mask_input_channels, self.config.image_size, self.config.image_size)
)
if self.built:
return
self.built = True
if getattr(self, "mask_embed", None) is not None:
with tf.name_scope(self.mask_embed.name):
self.mask_embed.build(None)
def _embed_points(self, points: tf.Tensor, labels: tf.Tensor, pad: bool) -> tf.Tensor:
"""Embeds point prompts."""
points = points + 0.5 # Shift to center of pixel
if pad:
target_point_shape = (shape_list(points)[0], shape_list(points)[1], 1, shape_list(points)[-1])
target_labels_shape = (shape_list(points)[0], shape_list(points)[1], 1)
padding_point = tf.zeros(target_point_shape, dtype=points.dtype)
padding_label = -tf.ones(target_labels_shape, dtype=labels.dtype)
points = tf.concat([points, padding_point], axis=2)
labels = tf.concat([labels, padding_label], axis=2)
input_shape = (self.input_image_size, self.input_image_size)
point_embedding = self.shared_embedding(points, input_shape)
point_embedding = tf.where(labels[..., None] == -1, self.not_a_point_embed[0], point_embedding)
point_embedding = tf.where(
labels[..., None] != -10,
point_embedding,
tf.zeros_like(point_embedding),
)
point_embedding = tf.where(
(labels == 0)[:, :, :, None], point_embedding + self.point_embed[0], point_embedding
)
point_embedding = tf.where(
(labels == 1)[:, :, :, None], point_embedding + self.point_embed[1], point_embedding
)
return point_embedding
def _embed_boxes(self, boxes: tf.Tensor) -> tf.Tensor:
"""Embeds box prompts."""
boxes = boxes + 0.5 # Shift to center of pixel
batch_size, nb_boxes = shape_list(boxes)[:2]
coords = tf.reshape(boxes, (batch_size, nb_boxes, 2, 2))
input_shape = (self.input_image_size, self.input_image_size)
corner_embedding = self.shared_embedding(coords, input_shape)
corner_embedding += tf.where(
tf.range(shape_list(corner_embedding)[2])[None, None, :, None] == 0,
self.point_embed[2][0],
self.point_embed[3][0],
)
return corner_embedding
def call(
self,
batch_size: Optional[int],
input_points: Optional[Tuple[tf.Tensor, tf.Tensor]],
input_labels: tf.Tensor | None,
input_boxes: tf.Tensor | None,
input_masks: tf.Tensor | None,
) -> Tuple[tf.Tensor, tf.Tensor]:
"""
Embeds different types of prompts, returning both sparse and dense embeddings.
Args:
points (`tf.Tensor`, *optional*):
point coordinates and labels to embed.
boxes (`tf.Tensor`, *optional*):
boxes to embed
masks (`tf.Tensor`, *optional*):
masks to embed
"""
sparse_embeddings = None
if input_points is not None:
batch_size, point_batch_size = shape_list(input_points)[:2]
if input_labels is None:
raise ValueError("If points are provided, labels must also be provided.")
point_embeddings = self._embed_points(input_points, input_labels, pad=(input_boxes is None))
sparse_embeddings = tf.zeros(
(batch_size, point_batch_size, 0, self.hidden_size), dtype=point_embeddings.dtype
)
sparse_embeddings = tf.concat([sparse_embeddings, point_embeddings], axis=2)
if input_boxes is not None:
batch_size = shape_list(input_boxes)[0]
box_embeddings = self._embed_boxes(input_boxes)
if sparse_embeddings is None:
sparse_embeddings = box_embeddings
else:
sparse_embeddings = tf.concat([sparse_embeddings, box_embeddings], axis=2)
if input_masks is not None:
dense_embeddings = self.mask_embed(input_masks)
else:
dense_embeddings = self.no_mask_embed[0]
dense_embeddings = tf.reshape(dense_embeddings, (1, -1, 1, 1))
dense_embeddings = tf.tile(
dense_embeddings, (batch_size, 1, self.image_embedding_size[0], self.image_embedding_size[1])
)
if sparse_embeddings is None:
sparse_embeddings = tf.zeros((batch_size, 0, 1, self.hidden_size), dtype=dense_embeddings.dtype)
return sparse_embeddings, dense_embeddings
class TFSamVisionAttention(keras.layers.Layer):
"""Multi-head Attention block with relative position embeddings."""
def __init__(self, config, window_size, **kwargs):
super().__init__(**kwargs)
input_size = (
(config.image_size // config.patch_size, config.image_size // config.patch_size)
if window_size == 0
else (window_size, window_size)
)
self.input_size = input_size
self.num_attention_heads = config.num_attention_heads
head_dim = config.hidden_size // config.num_attention_heads
self.head_dim = head_dim
self.scale = head_dim**-0.5
self.dropout = config.attention_dropout
self.qkv = keras.layers.Dense(config.hidden_size * 3, use_bias=config.qkv_bias, name="qkv")
self.proj = keras.layers.Dense(config.hidden_size, name="proj")
self.use_rel_pos = config.use_rel_pos
if self.use_rel_pos:
if input_size is None:
raise ValueError("Input size must be provided if using relative positional encoding.")
self.config = config
def build(self, input_shape=None):
if self.input_size is not None:
# initialize relative positional embeddings
self.rel_pos_h = self.add_weight(
shape=(2 * self.input_size[0] - 1, self.head_dim), initializer="zeros", name="rel_pos_h"
)
self.rel_pos_w = self.add_weight(
shape=(2 * self.input_size[1] - 1, self.head_dim), initializer="zeros", name="rel_pos_w"
)
if self.built:
return
self.built = True
if getattr(self, "qkv", None) is not None:
with tf.name_scope(self.qkv.name):
self.qkv.build([None, None, self.config.hidden_size])
if getattr(self, "proj", None) is not None:
with tf.name_scope(self.proj.name):
self.proj.build([None, None, self.config.hidden_size])
def get_rel_pos(self, q_size: int, k_size: int, rel_pos: tf.Tensor) -> tf.Tensor:
"""
Get relative positional embeddings according to the relative positions of
query and key sizes.
Args:
q_size (int):
size of the query.
k_size (int):
size of key k.
rel_pos (`tf.Tensor`):
relative position embeddings (L, channel).
Returns:
Extracted positional embeddings according to relative positions.
"""
max_rel_dist = int(2 * max(q_size, k_size) - 1)
# Interpolate rel pos if needed.
if rel_pos.shape[0] != max_rel_dist:
# Interpolate rel pos.
rel_pos_resized = tf.image.resize(
tf.reshape(rel_pos, (1, rel_pos.shape[0], -1)),
size=(max_rel_dist, rel_pos.shape[1]),
method="bilinear",
)
rel_pos_resized = tf.reshape(rel_pos_resized, (-1, max_rel_dist))
else:
rel_pos_resized = rel_pos
# Scale the coords with short length if shapes for q and k are different.
q_coords = tf.expand_dims(tf.range(q_size, dtype=tf.float32), 1) * max(k_size / q_size, 1.0)
k_coords = tf.expand_dims(tf.range(k_size, dtype=tf.float32), 0) * max(q_size / k_size, 1.0)
relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
return tf.gather(rel_pos_resized, tf.cast(relative_coords, tf.int32))
def add_decomposed_rel_pos(
self,
attn: tf.Tensor,
query: tf.Tensor,
rel_pos_h: tf.Tensor,
rel_pos_w: tf.Tensor,
q_size: Tuple[int, int],
k_size: Tuple[int, int],
) -> tf.Tensor:
"""
Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py
Args:
attn (`tf.Tensor`):
attention map.
query (`tf.Tensor`):
query q in the attention layer with shape (batch_size, query_height * query_width, channel).
rel_pos_h (`tf.Tensor`):
relative position embeddings (Lh, channel) for height axis.
rel_pos_w (`tf.Tensor`):
relative position embeddings (Lw, channel) for width axis.
q_size (tuple):
spatial sequence size of query q with (query_height, query_width).
k_size (tuple):
spatial sequence size of key k with (key_height, key_width).
Returns:
attn (`tf.Tensor`):
attention map with added relative positional embeddings.
"""
query_height, query_width = q_size
key_height, key_width = k_size
relative_position_height = self.get_rel_pos(query_height, key_height, rel_pos_h)
relative_position_width = self.get_rel_pos(query_width, key_width, rel_pos_w)
batch_size, _, dim = shape_list(query)
reshaped_query = tf.reshape(query, (batch_size, query_height, query_width, dim))
rel_h = tf.einsum("bhwc,hkc->bhwk", reshaped_query, relative_position_height)
rel_w = tf.einsum("bhwc,wkc->bhwk", reshaped_query, relative_position_width)
attn = tf.reshape(attn, (batch_size, query_height, query_width, key_height, key_width))
attn = attn + tf.expand_dims(rel_h, axis=-1) + tf.expand_dims(rel_w, axis=-2)
attn = tf.reshape(attn, (batch_size, query_height * query_width, key_height * key_width))
return attn
def call(self, hidden_states: tf.Tensor, output_attentions=False, training=False) -> tf.Tensor:
batch_size, height, width, _ = shape_list(hidden_states)
# qkv with shape (3, batch_size, nHead, height * width, channel)
qkv = tf.reshape(self.qkv(hidden_states), (batch_size, height * width, 3, self.num_attention_heads, -1))
qkv = tf.transpose(qkv, perm=(2, 0, 3, 1, 4))
# q, k, v with shape (batch_size * nHead, height * width, channel)
query, key, value = tf.unstack(
tf.reshape(qkv, (3, batch_size * self.num_attention_heads, height * width, -1)), axis=0
)
attn_weights = tf.matmul(query * self.scale, key, transpose_b=True)
if self.use_rel_pos:
attn_weights = self.add_decomposed_rel_pos(
attn_weights, query, self.rel_pos_h, self.rel_pos_w, (height, width), (height, width)
)
attn_weights = tf.nn.softmax(attn_weights, axis=-1)
if training:
attn_probs = tf.nn.dropout(attn_weights, rate=self.dropout)
else:
attn_probs = attn_weights
attn_output = tf.reshape(attn_probs @ value, (batch_size, self.num_attention_heads, height, width, -1))
attn_output = tf.transpose(attn_output, perm=(0, 2, 3, 1, 4))
attn_output = tf.reshape(attn_output, (batch_size, height, width, self.config.hidden_size))
attn_output = self.proj(attn_output)
if output_attentions:
outputs = (attn_output, attn_weights)
else:
outputs = (attn_output, None)
return outputs
class TFSamVisionLayer(keras.layers.Layer):
def __init__(self, config, window_size, **kwargs):
super().__init__(**kwargs)
self.layer_norm1 = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm1")
self.attn = TFSamVisionAttention(config, window_size, name="attn")
self.layer_norm2 = keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm2")
self.mlp = TFSamMLPBlock(config, name="mlp")
self.window_size = window_size
self.config = config
def window_partition(self, hidden_states: tf.Tensor, window_size: int) -> Tuple[tf.Tensor, Tuple[int, int]]:
batch_size, height, width, channel = shape_list(hidden_states)
pad_h = (window_size - height % window_size) % window_size
pad_w = (window_size - width % window_size) % window_size
if pad_h > 0 or pad_w > 0:
hidden_states = tf.pad(hidden_states, [[0, 0], [0, pad_h], [0, pad_w], [0, 0]])
pad_height, pad_width = height + pad_h, width + pad_w
hidden_states = tf.reshape(
hidden_states,
[batch_size, pad_height // window_size, window_size, pad_width // window_size, window_size, channel],
)
windows = tf.reshape(
tf.transpose(hidden_states, perm=[0, 1, 3, 2, 4, 5]), [-1, window_size, window_size, channel]
)
return windows, (pad_height, pad_width)
def window_unpartition(
self, windows: tf.Tensor, window_size: int, padding_shape: Tuple[int, int], original_shape: Tuple[int, int]
) -> tf.Tensor:
pad_height, pad_width = padding_shape
height, width = original_shape
batch_size = shape_list(windows)[0] // (pad_height * pad_width // window_size // window_size)
hidden_states = tf.reshape(
windows, [batch_size, pad_height // window_size, pad_width // window_size, window_size, window_size, -1]
)
hidden_states = tf.reshape(
tf.transpose(hidden_states, perm=[0, 1, 3, 2, 4, 5]), [batch_size, pad_height, pad_width, -1]
)
if pad_height > height or pad_width > width:
hidden_states = hidden_states[:, :height, :width, :]
return hidden_states
def call(
self,
hidden_states: tf.Tensor,
output_attentions: Optional[bool] = False,
training: Optional[bool] = False,
) -> Tuple[tf.Tensor]:
residual = hidden_states
hidden_states = self.layer_norm1(hidden_states)
if self.window_size > 0:
height, width = hidden_states.shape[1], hidden_states.shape[2]
hidden_states, padding_shape = self.window_partition(hidden_states, self.window_size)
hidden_states, attn_weights = self.attn(
hidden_states=hidden_states,
output_attentions=output_attentions,
training=training,
)
if self.window_size > 0:
hidden_states = self.window_unpartition(hidden_states, self.window_size, padding_shape, (height, width))
hidden_states = residual + hidden_states
layernorm_output = self.layer_norm2(hidden_states)
hidden_states = hidden_states + self.mlp(layernorm_output)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "layer_norm1", None) is not None:
with tf.name_scope(self.layer_norm1.name):
self.layer_norm1.build([None, None, None, self.config.hidden_size])
if getattr(self, "attn", None) is not None:
with tf.name_scope(self.attn.name):
self.attn.build(None)
if getattr(self, "layer_norm2", None) is not None:
with tf.name_scope(self.layer_norm2.name):
self.layer_norm2.build([None, None, None, self.config.hidden_size])
if getattr(self, "mlp", None) is not None:
with tf.name_scope(self.mlp.name):
self.mlp.build(None)
class TFSamVisionNeck(keras.layers.Layer):
def __init__(self, config: SamVisionConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.conv1 = keras.layers.Conv2D(
config.output_channels,
kernel_size=1,
use_bias=False,
name="conv1",
)
self.layer_norm1 = TFSamLayerNorm(config.output_channels, name="layer_norm1")
self.conv2 = keras.layers.Conv2D(
config.output_channels,
kernel_size=3,
padding="same",
use_bias=False,
name="conv2",
)
self.layer_norm2 = TFSamLayerNorm(config.output_channels, name="layer_norm2")
def call(self, hidden_states):
hidden_states = self.conv1(hidden_states)
hidden_states = self.layer_norm1(hidden_states)
hidden_states = self.conv2(hidden_states)
hidden_states = self.layer_norm2(hidden_states)
hidden_states = tf.transpose(hidden_states, perm=[0, 3, 1, 2])
return hidden_states
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "conv1", None) is not None:
with tf.name_scope(self.conv1.name):
self.conv1.build([None, None, None, self.config.hidden_size])
if getattr(self, "layer_norm1", None) is not None:
with tf.name_scope(self.layer_norm1.name):
self.layer_norm1.build(None)
if getattr(self, "conv2", None) is not None:
with tf.name_scope(self.conv2.name):
self.conv2.build([None, None, None, self.config.output_channels])
if getattr(self, "layer_norm2", None) is not None:
with tf.name_scope(self.layer_norm2.name):
self.layer_norm2.build(None)
class TFSamVisionEncoder(keras.layers.Layer):
def __init__(self, config: SamVisionConfig, **kwargs):
super().__init__(**kwargs)
self.config = config
self.image_size = config.image_size
self.patch_embed = TFSamPatchEmbeddings(config, name="patch_embed")
self.pos_embed = None
self.layers = []
for i in range(config.num_hidden_layers):
layer = TFSamVisionLayer(
config,
window_size=config.window_size if i not in config.global_attn_indexes else 0,
name=f"layers_._{i}",
)
self.layers.append(layer)
self.neck = TFSamVisionNeck(config, name="neck")
def build(self, input_shape=None):
if self.built:
return
self.built = True
if self.config.use_abs_pos:
# Initialize absolute positional embedding with pretrain image size.
self.pos_embed = self.add_weight(
shape=[
1,
self.config.image_size // self.config.patch_size,
self.config.image_size // self.config.patch_size,
self.config.hidden_size,
],
initializer="zeros",
trainable=True,
name="pos_embed",
)
if getattr(self, "patch_embed", None) is not None:
with tf.name_scope(self.patch_embed.name):
self.patch_embed.build(None)
if getattr(self, "neck", None) is not None:
with tf.name_scope(self.neck.name):
self.neck.build(None)
for layer in self.layers:
with tf.name_scope(layer.name):
layer.build(None)
def get_input_embeddings(self):
return self.patch_embed
def call(
self,
pixel_values: tf.Tensor | None = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
training: Optional[bool] = False,
) -> Union[Tuple, TFSamVisionEncoderOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
hidden_states = self.patch_embed(pixel_values)
if self.pos_embed is not None:
hidden_states = hidden_states + self.pos_embed
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layers):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(hidden_states, output_attentions=output_attentions, training=training)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
hidden_states = self.neck(hidden_states)
if not return_dict:
outputs = (hidden_states,)
if output_hidden_states:
outputs = outputs + (all_hidden_states,)
if output_attentions:
outputs = outputs + (all_self_attentions,)
return outputs
return TFSamVisionEncoderOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class TFSamPreTrainedModel(TFPreTrainedModel):
config_class = SamConfig
base_model_prefix = "sam"
main_input_name = "pixel_values"
SAM_START_DOCSTRING = r"""
This model inherits from [`TFPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a TensorFlow [keras.Model](https://www.tensorflow.org/api_docs/python/tf/keras/Model)
subclass. Use it as a regular TensorFlow Model and refer to the TensorFlow documentation for all matter related to
general usage and behavior.
Parameters:
config ([`SamConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~TFPreTrainedModel.from_pretrained`] method to load the model weights.
"""
SAM_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`SamProcessor`]. See [`SamProcessor.__call__`] for
details.
input_points (`tf.Tensor` of shape `(batch_size, num_points, 2)`):
Input 2D spatial points, this is used by the prompt encoder to encode the prompt. Generally yields to much
better results. The points can be obtained by passing a list of list of list to the processor that will
create corresponding `tf` tensors of dimension 4. The first dimension is the image batch size, the second
dimension is the point batch size (i.e. how many segmentation masks do we want the model to predict per
input point), the third dimension is the number of points per segmentation mask (it is possible to pass
multiple points for a single mask), and the last dimension is the x (vertical) and y (horizontal)
coordinates of the point. If a different number of points is passed either for each image, or for each
mask, the processor will create "PAD" points that will correspond to the (0, 0) coordinate, and the
computation of the embedding will be skipped for these points using the labels.
input_labels (`tf.Tensor` of shape `(batch_size, point_batch_size, num_points)`):
Input labels for the points, this is used by the prompt encoder to encode the prompt. According to the
official implementation, there are 3 types of labels
- `1`: the point is a point that contains the object of interest
- `0`: the point is a point that does not contain the object of interest
- `-1`: the point corresponds to the background
We added the label:
- `-10`: the point is a padding point, thus should be ignored by the prompt encoder
The padding labels should be automatically done by the processor.
input_boxes (`tf.Tensor` of shape `(batch_size, num_boxes, 4)`):
Input boxes for the points, this is used by the prompt encoder to encode the prompt. Generally yields to
much better generated masks. The boxes can be obtained by passing a list of list of list to the processor,
that will generate a `tf` tensor, with each dimension corresponding respectively to the image batch size,
the number of boxes per image and the coordinates of the top left and botton right point of the box. In the
order (`x1`, `y1`, `x2`, `y2`):
- `x1`: the x coordinate of the top left point of the input box
- `y1`: the y coordinate of the top left point of the input box
- `x2`: the x coordinate of the bottom right point of the input box
- `y2`: the y coordinate of the bottom right point of the input box
input_masks (`tf.Tensor` of shape `(batch_size, image_size, image_size)`):
SAM model also accepts segmentation masks as input. The mask will be embedded by the prompt encoder to
generate a corresponding embedding, that will be fed later on to the mask decoder. These masks needs to be
manually fed by the user, and they need to be of shape (`batch_size`, `image_size`, `image_size`).
image_embeddings (`tf.Tensor` of shape `(batch_size, output_channels, window_size, window_size)`):
Image embeddings, this is used by the mask decder to generate masks and iou scores. For more memory
efficient computation, users can first retrieve the image embeddings using the `get_image_embeddings`
method, and then feed them to the `call` method instead of feeding the `pixel_values`.
multimask_output (`bool`, *optional*):
In the original implementation and paper, the model always outputs 3 masks per image (or per point / per
bounding box if relevant). However, it is possible to just output a single mask, that corresponds to the
"best" mask, by specifying `multimask_output=False`.
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"Segment Anything Model (SAM) for generating segmentation masks, given an input image and ",
" optional 2D location and bounding boxes.",
SAM_START_DOCSTRING,
)
class TFSamModel(TFSamPreTrainedModel):
_keys_to_ignore_on_load_missing = [r"prompt_encoder.shared_embedding.positional_embedding"]
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
self.shared_image_embedding = TFSamPositionalEmbedding(config.vision_config, name="shared_image_embedding")
self.vision_encoder = TFSamVisionEncoder(config.vision_config, name="vision_encoder")
self.prompt_encoder = TFSamPromptEncoder(
config.prompt_encoder_config, self.shared_image_embedding, name="prompt_encoder"
)
self.mask_decoder = TFSamMaskDecoder(config.mask_decoder_config, name="mask_decoder")
self.config = config
def get_input_embeddings(self):
return self.vision_encoder.get_input_embeddings()
def get_image_wide_positional_embeddings(self):
size = self.config.prompt_encoder_config.image_embedding_size
grid = tf.ones((size, size))
y_embed = tf.math.cumsum(grid, axis=0) - 0.5
x_embed = tf.math.cumsum(grid, axis=1) - 0.5
y_embed = y_embed / size
x_embed = x_embed / size
positional_embedding = self.shared_image_embedding(tf.stack([x_embed, y_embed], axis=-1))
return tf.expand_dims(tf.transpose(positional_embedding, perm=[2, 0, 1]), axis=0) # channel x height x width
def get_image_embeddings(
self,
pixel_values,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
r"""
Returns the image embeddings by passing the pixel values through the vision encoder.
Args:
pixel_values (`tf.Tensor` of shape `(batch_size, num_channels, height, width)`):
Input pixel values
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.TFModelOutput`] instead of a plain tuple.
"""
vision_output = self.vision_encoder(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeddings = vision_output[0]
return image_embeddings
def get_prompt_embeddings(
self,
input_points: tf.Tensor | None = None,
input_labels: tf.Tensor | None = None,
input_boxes: tf.Tensor | None = None,
input_masks: tf.Tensor | None = None,
):
r"""
Returns the prompt embeddings by passing the input points, labels, boxes and masks through the prompt encoder.
Args:
input_points (`tf.Tensor` of shape `(batch_size, point_batch_size, num_points_per_image, 2)`):
Optional input points for the prompt encoder. The padding of the point is automatically done by the
processor. `point_batch_size` refers to the number of masks that we want the model to predict per
point. The model will output `point_batch_size` times 3 masks in total.
input_labels (`tf.Tensor` of shape `(batch_size, point_batch_size, num_points_per_image)`):
Optional input labels for the prompt encoder. The padding of the labels is automatically done by the
processor, or can be fed by the user.
input_boxes (`tf.Tensor` of shape `(batch_size, num_boxes_per_image, 4)`):
Optional input boxes for the prompt encoder. The padding of the boxes is automatically done by the
processor. users can also pass manually the input boxes.
input_masks (`tf.Tensor` of shape `(batch_size, image_size, image_size)`):
Optional input masks for the prompt encoder.
"""
prompt_output = self.prompt_encoder(
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
input_masks=input_masks,
)
return prompt_output
@unpack_inputs
@add_start_docstrings_to_model_forward(SAM_INPUTS_DOCSTRING)
def call(
self,
pixel_values: TFModelInputType | None = None,
input_points: tf.Tensor | None = None,
input_labels: tf.Tensor | None = None,
input_boxes: tf.Tensor | None = None,
input_masks: tf.Tensor | None = None,
image_embeddings: tf.Tensor | None = None,
multimask_output: bool = True,
output_attentions: bool | None = None,
output_hidden_states: bool | None = None,
return_dict: bool | None = None,
training: bool = False,
**kwargs,
) -> TFSamImageSegmentationOutput | Tuple[tf.Tensor]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None and image_embeddings is None:
raise ValueError("Either pixel_values or image_embeddings must be provided.")
if pixel_values is not None and image_embeddings is not None:
raise ValueError("Only one of pixel_values and image_embeddings can be provided.")
if input_points is not None and len(input_points.shape) != 4:
raise ValueError(
"The input_points must be a 4D tensor. Of shape `batch_size`, `point_batch_size`, `nb_points_per_image`, `2`.",
" got {}.".format(input_points.shape),
)
if input_boxes is not None and len(input_boxes.shape) != 3:
raise ValueError(
"The input_points must be a 3D tensor. Of shape `batch_size`, `nb_boxes`, `4`.",
" got {}.".format(input_boxes.shape),
)
if input_points is not None and input_boxes is not None:
point_batch_size = shape_list(input_points)[1]
box_batch_size = shape_list(input_boxes)[1]
if point_batch_size != box_batch_size:
raise ValueError(
"You should provide as many bounding boxes as input points per box. Got {} and {}.".format(
point_batch_size, box_batch_size
)
)
if pixel_values is not None:
# Ensures that later checks pass even with an all-None shape from the serving signature
pixel_values = tf.ensure_shape(
pixel_values,
[
None,
self.config.vision_config.num_channels,
self.config.vision_config.image_size,
self.config.vision_config.image_size,
],
)
image_positional_embeddings = self.get_image_wide_positional_embeddings()
# repeat with batch size
batch_size = shape_list(pixel_values)[0] if pixel_values is not None else shape_list(image_embeddings)[0]
image_positional_embeddings = tf.repeat(image_positional_embeddings, batch_size, axis=0)
vision_attentions = None
vision_hidden_states = None
if pixel_values is not None:
vision_outputs = self.vision_encoder(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=True,
training=training,
)
image_embeddings = vision_outputs["last_hidden_state"]
if output_hidden_states:
vision_hidden_states = vision_outputs["hidden_states"]
if output_attentions:
vision_attentions = vision_outputs["attentions"]
if input_points is not None and input_labels is None:
input_labels = tf.ones_like(input_points[:, :, :, 0], dtype=tf.int32)
if input_points is not None and image_embeddings.shape[0] != input_points.shape[0]:
raise ValueError(
"The batch size of the image embeddings and the input points must be the same. ",
"Got {} and {} respectively.".format(image_embeddings.shape[0], input_points.shape[0]),
" if you want to pass multiple points for the same image, make sure that you passed ",
" input_points of shape (batch_size, point_batch_size, num_points_per_image, 3) and ",
" input_labels of shape (batch_size, point_batch_size, num_points_per_image)",
)
sparse_embeddings, dense_embeddings = self.prompt_encoder(
batch_size=shape_list(image_embeddings)[0],
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
input_masks=input_masks,
)
low_res_masks, iou_predictions, mask_decoder_attentions = self.mask_decoder(
image_embeddings=image_embeddings,
image_positional_embeddings=image_positional_embeddings,
sparse_prompt_embeddings=sparse_embeddings,
dense_prompt_embeddings=dense_embeddings,
multimask_output=multimask_output,
output_attentions=output_attentions,
)
if not return_dict:
output = (iou_predictions, low_res_masks)
if output_hidden_states:
output = output + (vision_hidden_states,)
if output_attentions:
output = output + (vision_attentions, mask_decoder_attentions)
return output
return TFSamImageSegmentationOutput(
iou_scores=iou_predictions,
pred_masks=low_res_masks,
vision_hidden_states=vision_hidden_states,
vision_attentions=vision_attentions,
mask_decoder_attentions=mask_decoder_attentions,
)
def serving_output(self, output: TFSamImageSegmentationOutput) -> TFSamImageSegmentationOutput:
hs = tf.convert_to_tensor(output.vision_hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.vision_attentions) if self.config.output_attentions else None
return TFSamImageSegmentationOutput(
iou_scores=output.iou_scores,
pred_masks=output.pred_masks,
vision_hidden_states=hs if self.config.output_hidden_states else None,
vision_attentions=attns if self.config.output_attentions else None,
mask_decoder_attentions=output.mask_decoder_attentions if self.config.output_attentions else None,
)
def build(self, input_shape=None):
if self.built:
return
self.built = True
if getattr(self, "shared_image_embedding", None) is not None:
with tf.name_scope(self.shared_image_embedding.name):
self.shared_image_embedding.build(None)
if getattr(self, "vision_encoder", None) is not None:
with tf.name_scope(self.vision_encoder.name):
self.vision_encoder.build(None)
if getattr(self, "prompt_encoder", None) is not None:
with tf.name_scope(self.prompt_encoder.name):
self.prompt_encoder.build(None)
if getattr(self, "mask_decoder", None) is not None:
with tf.name_scope(self.mask_decoder.name):
self.mask_decoder.build(None)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/__init__.py
|
# Copyright 2023 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import TYPE_CHECKING
from ...utils import (
OptionalDependencyNotAvailable,
_LazyModule,
is_tf_available,
is_torch_available,
is_vision_available,
)
_import_structure = {
"configuration_sam": [
"SAM_PRETRAINED_CONFIG_ARCHIVE_MAP",
"SamConfig",
"SamMaskDecoderConfig",
"SamPromptEncoderConfig",
"SamVisionConfig",
],
"processing_sam": ["SamProcessor"],
}
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_sam"] = [
"SAM_PRETRAINED_MODEL_ARCHIVE_LIST",
"SamModel",
"SamPreTrainedModel",
]
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["modeling_tf_sam"] = [
"TF_SAM_PRETRAINED_MODEL_ARCHIVE_LIST",
"TFSamModel",
"TFSamPreTrainedModel",
]
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
_import_structure["image_processing_sam"] = ["SamImageProcessor"]
if TYPE_CHECKING:
from .configuration_sam import (
SAM_PRETRAINED_CONFIG_ARCHIVE_MAP,
SamConfig,
SamMaskDecoderConfig,
SamPromptEncoderConfig,
SamVisionConfig,
)
from .processing_sam import SamProcessor
try:
if not is_torch_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_sam import SAM_PRETRAINED_MODEL_ARCHIVE_LIST, SamModel, SamPreTrainedModel
try:
if not is_tf_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .modeling_tf_sam import TF_SAM_PRETRAINED_MODEL_ARCHIVE_LIST, TFSamModel, TFSamPreTrainedModel
try:
if not is_vision_available():
raise OptionalDependencyNotAvailable()
except OptionalDependencyNotAvailable:
pass
else:
from .image_processing_sam import SamImageProcessor
else:
import sys
sys.modules[__name__] = _LazyModule(__name__, globals()["__file__"], _import_structure, module_spec=__spec__)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/convert_sam_to_hf.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Convert SAM checkpoints from the original repository.
URL: https://github.com/facebookresearch/segment-anything.
Also supports converting the SlimSAM checkpoints from https://github.com/czg1225/SlimSAM/tree/master.
"""
import argparse
import re
import numpy as np
import requests
import torch
from huggingface_hub import hf_hub_download
from PIL import Image
from transformers import (
SamConfig,
SamImageProcessor,
SamModel,
SamProcessor,
SamVisionConfig,
)
def get_config(model_name):
if "slimsam-50" in model_name:
vision_config = SamVisionConfig(
hidden_size=384,
mlp_dim=1536,
num_hidden_layers=12,
num_attention_heads=12,
global_attn_indexes=[2, 5, 8, 11],
)
elif "slimsam-77" in model_name:
vision_config = SamVisionConfig(
hidden_size=168,
mlp_dim=696,
num_hidden_layers=12,
num_attention_heads=12,
global_attn_indexes=[2, 5, 8, 11],
)
elif "sam_vit_b" in model_name:
vision_config = SamVisionConfig()
elif "sam_vit_l" in model_name:
vision_config = SamVisionConfig(
hidden_size=1024,
num_hidden_layers=24,
num_attention_heads=16,
global_attn_indexes=[5, 11, 17, 23],
)
elif "sam_vit_h" in model_name:
vision_config = SamVisionConfig(
hidden_size=1280,
num_hidden_layers=32,
num_attention_heads=16,
global_attn_indexes=[7, 15, 23, 31],
)
config = SamConfig(
vision_config=vision_config,
)
return config
KEYS_TO_MODIFY_MAPPING = {
"iou_prediction_head.layers.0": "iou_prediction_head.proj_in",
"iou_prediction_head.layers.1": "iou_prediction_head.layers.0",
"iou_prediction_head.layers.2": "iou_prediction_head.proj_out",
"mask_decoder.output_upscaling.0": "mask_decoder.upscale_conv1",
"mask_decoder.output_upscaling.1": "mask_decoder.upscale_layer_norm",
"mask_decoder.output_upscaling.3": "mask_decoder.upscale_conv2",
"mask_downscaling.0": "mask_embed.conv1",
"mask_downscaling.1": "mask_embed.layer_norm1",
"mask_downscaling.3": "mask_embed.conv2",
"mask_downscaling.4": "mask_embed.layer_norm2",
"mask_downscaling.6": "mask_embed.conv3",
"point_embeddings": "point_embed",
"pe_layer.positional_encoding_gaussian_matrix": "shared_embedding.positional_embedding",
"image_encoder": "vision_encoder",
"neck.0": "neck.conv1",
"neck.1": "neck.layer_norm1",
"neck.2": "neck.conv2",
"neck.3": "neck.layer_norm2",
"patch_embed.proj": "patch_embed.projection",
".norm": ".layer_norm",
"blocks": "layers",
}
def replace_keys(state_dict):
model_state_dict = {}
state_dict.pop("pixel_mean", None)
state_dict.pop("pixel_std", None)
output_hypernetworks_mlps_pattern = r".*.output_hypernetworks_mlps.(\d+).layers.(\d+).*"
for key, value in state_dict.items():
for key_to_modify, new_key in KEYS_TO_MODIFY_MAPPING.items():
if key_to_modify in key:
key = key.replace(key_to_modify, new_key)
if re.match(output_hypernetworks_mlps_pattern, key):
layer_nb = int(re.match(output_hypernetworks_mlps_pattern, key).group(2))
if layer_nb == 0:
key = key.replace("layers.0", "proj_in")
elif layer_nb == 1:
key = key.replace("layers.1", "layers.0")
elif layer_nb == 2:
key = key.replace("layers.2", "proj_out")
model_state_dict[key] = value
model_state_dict["shared_image_embedding.positional_embedding"] = model_state_dict[
"prompt_encoder.shared_embedding.positional_embedding"
]
return model_state_dict
def convert_sam_checkpoint(model_name, checkpoint_path, pytorch_dump_folder, push_to_hub):
config = get_config(model_name)
state_dict = torch.load(checkpoint_path, map_location="cpu")
state_dict = replace_keys(state_dict)
image_processor = SamImageProcessor()
processor = SamProcessor(image_processor=image_processor)
hf_model = SamModel(config)
hf_model.eval()
device = "cuda" if torch.cuda.is_available() else "cpu"
hf_model.load_state_dict(state_dict)
hf_model = hf_model.to(device)
img_url = "https://huggingface.co/ybelkada/segment-anything/resolve/main/assets/car.png"
raw_image = Image.open(requests.get(img_url, stream=True).raw).convert("RGB")
input_points = [[[500, 375]]]
input_labels = [[1]]
inputs = processor(images=np.array(raw_image), return_tensors="pt").to(device)
with torch.no_grad():
output = hf_model(**inputs)
scores = output.iou_scores.squeeze()
if model_name == "sam_vit_b_01ec64":
inputs = processor(
images=np.array(raw_image), input_points=input_points, input_labels=input_labels, return_tensors="pt"
).to(device)
with torch.no_grad():
output = hf_model(**inputs)
scores = output.iou_scores.squeeze()
elif model_name == "sam_vit_h_4b8939":
inputs = processor(
images=np.array(raw_image), input_points=input_points, input_labels=input_labels, return_tensors="pt"
).to(device)
with torch.no_grad():
output = hf_model(**inputs)
scores = output.iou_scores.squeeze()
assert scores[-1].item() == 0.9712603092193604
input_boxes = ((75, 275, 1725, 850),)
inputs = processor(images=np.array(raw_image), input_boxes=input_boxes, return_tensors="pt").to(device)
with torch.no_grad():
output = hf_model(**inputs)
scores = output.iou_scores.squeeze()
assert scores[-1].item() == 0.8686015605926514
# Test with 2 points and 1 image.
input_points = [[[400, 650], [800, 650]]]
input_labels = [[1, 1]]
inputs = processor(
images=np.array(raw_image), input_points=input_points, input_labels=input_labels, return_tensors="pt"
).to(device)
with torch.no_grad():
output = hf_model(**inputs)
scores = output.iou_scores.squeeze()
assert scores[-1].item() == 0.9936047792434692
if pytorch_dump_folder is not None:
processor.save_pretrained(pytorch_dump_folder)
hf_model.save_pretrained(pytorch_dump_folder)
if push_to_hub:
repo_id = f"nielsr/{model_name}" if "slimsam" in model_name else f"meta/{model_name}"
processor.push_to_hub(repo_id)
hf_model.push_to_hub(repo_id)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
choices = ["sam_vit_b_01ec64", "sam_vit_h_4b8939", "sam_vit_l_0b3195", "slimsam-50-uniform", "slimsam-77-uniform"]
parser.add_argument(
"--model_name",
default="sam_vit_h_4b8939",
choices=choices,
type=str,
help="Name of the original model to convert",
)
parser.add_argument(
"--checkpoint_path",
type=str,
required=False,
help="Path to the original checkpoint",
)
parser.add_argument("--pytorch_dump_folder_path", default=None, type=str, help="Path to the output PyTorch model.")
parser.add_argument(
"--push_to_hub",
action="store_true",
help="Whether to push the model and processor to the hub after converting",
)
args = parser.parse_args()
if "slimsam" in args.model_name:
checkpoint_path = args.checkpoint_path
if checkpoint_path is None:
raise ValueError("You need to provide a checkpoint path for SlimSAM models.")
else:
checkpoint_path = hf_hub_download("ybelkada/segment-anything", f"checkpoints/{args.model_name}.pth")
convert_sam_checkpoint(args.model_name, checkpoint_path, args.pytorch_dump_folder_path, args.push_to_hub)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/modeling_sam.py
|
# coding=utf-8
# Copyright 2023 The Meta AI Authors and The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch SAM model."""
import collections
import math
from dataclasses import dataclass
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
import torch
import torch.nn.functional as F
import torch.utils.checkpoint
from torch import Tensor, nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_sam import SamConfig, SamMaskDecoderConfig, SamPromptEncoderConfig, SamVisionConfig
logger = logging.get_logger(__name__)
_CONFIG_FOR_DOC = "SamConfig"
_CHECKPOINT_FOR_DOC = "facebook/sam-vit-huge"
from ..deprecated._archive_maps import SAM_PRETRAINED_MODEL_ARCHIVE_LIST # noqa: F401, E402
@dataclass
class SamVisionEncoderOutput(ModelOutput):
"""
Base class for sam vision model's outputs that also contains image embeddings obtained by applying the projection
layer to the pooler_output.
Args:
image_embeds (`torch.FloatTensor` of shape `(batch_size, output_dim)` *optional* returned when model is initialized with `with_projection=True`):
The image embeddings obtained by applying the projection layer to the pooler_output.
last_hidden_state (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
image_embeds: Optional[torch.FloatTensor] = None
last_hidden_state: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
@dataclass
class SamImageSegmentationOutput(ModelOutput):
"""
Base class for Segment-Anything model's output
Args:
iou_scores (`torch.FloatTensor` of shape `(batch_size, num_masks)`):
The iou scores of the predicted masks.
pred_masks (`torch.FloatTensor` of shape `(batch_size, num_masks, height, width)`):
The predicted low resolutions masks. Needs to be post-processed by the processor
vision_hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the vision model at the output of each layer plus the optional initial embedding outputs.
vision_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
mask_decoder_attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
iou_scores: torch.FloatTensor = None
pred_masks: torch.FloatTensor = None
vision_hidden_states: Optional[Tuple[torch.FloatTensor, ...]] = None
vision_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
mask_decoder_attentions: Optional[Tuple[torch.FloatTensor, ...]] = None
class SamPatchEmbeddings(nn.Module):
"""
This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
`hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
Transformer.
"""
def __init__(self, config):
super().__init__()
image_size, patch_size = config.image_size, config.patch_size
num_channels, hidden_size = config.num_channels, config.hidden_size
image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
self.image_size = image_size
self.patch_size = patch_size
self.num_channels = num_channels
self.num_patches = num_patches
self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)
def forward(self, pixel_values):
batch_size, num_channels, height, width = pixel_values.shape
if num_channels != self.num_channels:
raise ValueError(
"Make sure that the channel dimension of the pixel values match with the one set in the configuration."
)
if height != self.image_size[0] or width != self.image_size[1]:
raise ValueError(
f"Input image size ({height}*{width}) doesn't match model ({self.image_size[0]}*{self.image_size[1]})."
)
embeddings = self.projection(pixel_values).permute(0, 2, 3, 1)
return embeddings
class SamMLPBlock(nn.Module):
def __init__(self, config):
super().__init__()
self.lin1 = nn.Linear(config.hidden_size, config.mlp_dim)
self.lin2 = nn.Linear(config.mlp_dim, config.hidden_size)
self.act = ACT2FN[config.hidden_act]
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.lin1(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.lin2(hidden_states)
return hidden_states
# Copied from transformers.models.convnext.modeling_convnext.ConvNextLayerNorm with ConvNext->Sam
class SamLayerNorm(nn.Module):
r"""LayerNorm that supports two data formats: channels_last (default) or channels_first.
The ordering of the dimensions in the inputs. channels_last corresponds to inputs with shape (batch_size, height,
width, channels) while channels_first corresponds to inputs with shape (batch_size, channels, height, width).
"""
def __init__(self, normalized_shape, eps=1e-6, data_format="channels_last"):
super().__init__()
self.weight = nn.Parameter(torch.ones(normalized_shape))
self.bias = nn.Parameter(torch.zeros(normalized_shape))
self.eps = eps
self.data_format = data_format
if self.data_format not in ["channels_last", "channels_first"]:
raise NotImplementedError(f"Unsupported data format: {self.data_format}")
self.normalized_shape = (normalized_shape,)
def forward(self, x: torch.Tensor) -> torch.Tensor:
if self.data_format == "channels_last":
x = torch.nn.functional.layer_norm(x, self.normalized_shape, self.weight, self.bias, self.eps)
elif self.data_format == "channels_first":
input_dtype = x.dtype
x = x.float()
u = x.mean(1, keepdim=True)
s = (x - u).pow(2).mean(1, keepdim=True)
x = (x - u) / torch.sqrt(s + self.eps)
x = x.to(dtype=input_dtype)
x = self.weight[:, None, None] * x + self.bias[:, None, None]
return x
class SamAttention(nn.Module):
"""
SAM's attention layer that allows for downscaling the size of the embedding after projection to queries, keys, and
values.
"""
def __init__(self, config, downsample_rate=None):
super().__init__()
self.hidden_size = config.hidden_size
downsample_rate = config.attention_downsample_rate if downsample_rate is None else downsample_rate
self.internal_dim = config.hidden_size // downsample_rate
self.num_attention_heads = config.num_attention_heads
if self.internal_dim % config.num_attention_heads != 0:
raise ValueError("num_attention_heads must divide hidden_size.")
self.q_proj = nn.Linear(self.hidden_size, self.internal_dim)
self.k_proj = nn.Linear(self.hidden_size, self.internal_dim)
self.v_proj = nn.Linear(self.hidden_size, self.internal_dim)
self.out_proj = nn.Linear(self.internal_dim, self.hidden_size)
def _separate_heads(self, hidden_states: Tensor, num_attention_heads: int) -> Tensor:
batch, point_batch_size, n_tokens, channel = hidden_states.shape
c_per_head = channel // num_attention_heads
hidden_states = hidden_states.reshape(batch * point_batch_size, n_tokens, num_attention_heads, c_per_head)
return hidden_states.transpose(1, 2)
def _recombine_heads(self, hidden_states: Tensor, point_batch_size: int) -> Tensor:
batch, n_heads, n_tokens, c_per_head = hidden_states.shape
hidden_states = hidden_states.transpose(1, 2)
return hidden_states.reshape(batch // point_batch_size, point_batch_size, n_tokens, n_heads * c_per_head)
def forward(self, query: Tensor, key: Tensor, value: Tensor, attention_similarity: Tensor = None) -> Tensor:
# Input projections
query = self.q_proj(query)
key = self.k_proj(key)
value = self.v_proj(value)
point_batch_size = query.shape[1]
# Separate into heads
query = self._separate_heads(query, self.num_attention_heads)
key = self._separate_heads(key, self.num_attention_heads)
value = self._separate_heads(value, self.num_attention_heads)
# SamAttention
_, _, _, c_per_head = query.shape
attn = query @ key.permute(0, 1, 3, 2) # batch_size * point_batch_size x N_heads x N_tokens x N_tokens
attn = attn / math.sqrt(c_per_head)
attn = torch.softmax(attn, dim=-1)
if attention_similarity is not None:
attn = attn + attention_similarity
attn = torch.softmax(attn, dim=-1)
# Get output
out = attn @ value
out = self._recombine_heads(out, point_batch_size)
out = self.out_proj(out)
return out
class SamTwoWayAttentionBlock(nn.Module):
def __init__(self, config, attention_downsample_rate: int = 2, skip_first_layer_pe: bool = False):
"""
A transformer block with four layers:
(1) self-attention of sparse inputs (2) cross attention of sparse inputs -> dense inputs (3) mlp block on
sparse inputs (4) cross attention of dense inputs -> sparse inputs
Arguments:
config (`SamMaskDecoderConfig`):
The configuration file used to instantiate the block
attention_downsample_rate (*optionalk*, int, defaults to 2):
The downsample ratio of the block used to reduce the inner dim of the attention.
skip_first_layer_pe (*optional*, bool, defaults to `False`):
Whether or not to skip the addition of the query_point_embedding on the first layer.
"""
super().__init__()
self.hidden_size = config.hidden_size
self.layer_norm_eps = config.layer_norm_eps
self.self_attn = SamAttention(config, downsample_rate=1)
self.layer_norm1 = nn.LayerNorm(self.hidden_size, eps=self.layer_norm_eps)
self.cross_attn_token_to_image = SamAttention(config, downsample_rate=attention_downsample_rate)
self.layer_norm2 = nn.LayerNorm(self.hidden_size, eps=self.layer_norm_eps)
self.mlp = SamMLPBlock(config)
self.layer_norm3 = nn.LayerNorm(self.hidden_size, eps=self.layer_norm_eps)
self.layer_norm4 = nn.LayerNorm(self.hidden_size, eps=self.layer_norm_eps)
self.cross_attn_image_to_token = SamAttention(config, downsample_rate=attention_downsample_rate)
self.skip_first_layer_pe = skip_first_layer_pe
def forward(
self,
queries: Tensor,
keys: Tensor,
query_point_embedding: Tensor,
key_point_embedding: Tensor,
attention_similarity: Tensor,
output_attentions: bool = False,
):
# Self attention block
if self.skip_first_layer_pe:
queries = self.self_attn(query=queries, key=queries, value=queries)
else:
query = queries + query_point_embedding
attn_out = self.self_attn(query=query, key=query, value=queries)
queries = queries + attn_out
queries = self.layer_norm1(queries)
# Cross attention block, tokens attending to image embedding
query = queries + query_point_embedding
key = keys + key_point_embedding
attn_out = self.cross_attn_token_to_image(
query=query, key=key, value=keys, attention_similarity=attention_similarity
)
queries = queries + attn_out
queries = self.layer_norm2(queries)
# MLP block
mlp_out = self.mlp(queries)
queries = queries + mlp_out
queries = self.layer_norm3(queries)
# Cross attention block, image embedding attending to tokens
query = queries + query_point_embedding
key = keys + key_point_embedding
attn_out = self.cross_attn_image_to_token(query=key, key=query, value=queries)
keys = keys + attn_out
keys = self.layer_norm4(keys)
outputs = (queries, keys)
if output_attentions:
outputs = outputs + (attn_out,)
else:
outputs = outputs + (None,)
return outputs
class SamTwoWayTransformer(nn.Module):
def __init__(self, config: SamMaskDecoderConfig):
super().__init__()
self.config = config
self.num_hidden_layers = config.num_hidden_layers
self.layers = nn.ModuleList()
for i in range(self.num_hidden_layers):
self.layers.append(SamTwoWayAttentionBlock(config, skip_first_layer_pe=(i == 0)))
self.final_attn_token_to_image = SamAttention(config)
self.layer_norm_final_attn = nn.LayerNorm(config.hidden_size)
def forward(
self,
point_embeddings: Tensor,
image_embeddings: Tensor,
image_positional_embeddings: Tensor,
attention_similarity: Tensor,
target_embedding=None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, BaseModelOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
all_attentions = ()
if image_embeddings is None:
raise ValueError("You have to specify an image_embedding")
image_embeddings = image_embeddings.flatten(2).permute(0, 2, 1).unsqueeze(1)
image_positional_embeddings = image_positional_embeddings.flatten(2).permute(0, 2, 1).unsqueeze(1)
# Prepare queries
queries = point_embeddings
keys = image_embeddings
# Apply transformer blocks and final layernorm
for layer in self.layers:
if target_embedding is not None:
queries += target_embedding
queries, keys, attention_outputs = layer(
queries=queries,
keys=keys,
query_point_embedding=point_embeddings,
key_point_embedding=image_positional_embeddings,
attention_similarity=attention_similarity,
output_attentions=output_attentions,
)
if output_attentions:
all_attentions = all_attentions + (attention_outputs,)
# Apply the final attenion layer from the points to the image
query = queries + point_embeddings
key = keys + image_positional_embeddings
attn_out = self.final_attn_token_to_image(query=query, key=key, value=keys)
queries = queries + attn_out
queries = self.layer_norm_final_attn(queries)
return queries, keys, all_attentions
class SamFeedForward(nn.Module):
def __init__(
self, input_dim: int, hidden_dim: int, output_dim: int, num_layers: int, sigmoid_output: bool = False
):
super().__init__()
self.num_layers = num_layers
self.activation = nn.ReLU()
self.proj_in = nn.Linear(input_dim, hidden_dim)
self.proj_out = nn.Linear(hidden_dim, output_dim)
self.layers = nn.ModuleList([nn.Linear(hidden_dim, hidden_dim) for _ in range(num_layers - 2)])
self.sigmoid_output = sigmoid_output
def forward(self, hidden_states):
hidden_states = self.proj_in(hidden_states)
hidden_states = self.activation(hidden_states)
for layer in self.layers:
hidden_states = self.activation(layer(hidden_states))
hidden_states = self.proj_out(hidden_states)
if self.sigmoid_output:
hidden_states = F.sigmoid(hidden_states)
return hidden_states
class SamMaskDecoder(nn.Module):
def __init__(self, config: SamMaskDecoderConfig):
super().__init__()
self.hidden_size = config.hidden_size
self.num_multimask_outputs = config.num_multimask_outputs
self.num_mask_tokens = config.num_multimask_outputs + 1
self.iou_token = nn.Embedding(1, self.hidden_size)
self.mask_tokens = nn.Embedding(self.num_mask_tokens, self.hidden_size)
self.transformer = SamTwoWayTransformer(config)
# should we create a new class for this?
self.upscale_conv1 = nn.ConvTranspose2d(self.hidden_size, self.hidden_size // 4, kernel_size=2, stride=2)
self.upscale_conv2 = nn.ConvTranspose2d(self.hidden_size // 4, self.hidden_size // 8, kernel_size=2, stride=2)
self.upscale_layer_norm = SamLayerNorm(self.hidden_size // 4, data_format="channels_first")
self.activation = nn.GELU()
mlps_list = []
for _ in range(self.num_mask_tokens):
mlps_list += [SamFeedForward(self.hidden_size, self.hidden_size, self.hidden_size // 8, 3)]
self.output_hypernetworks_mlps = nn.ModuleList(mlps_list)
self.iou_prediction_head = SamFeedForward(
self.hidden_size, config.iou_head_hidden_dim, self.num_mask_tokens, config.iou_head_depth
)
def forward(
self,
image_embeddings: torch.Tensor,
image_positional_embeddings: torch.Tensor,
sparse_prompt_embeddings: torch.Tensor,
dense_prompt_embeddings: torch.Tensor,
multimask_output: bool,
output_attentions: Optional[bool] = None,
attention_similarity: torch.Tensor = None,
target_embedding: torch.Tensor = None,
) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Predict masks given image and prompt embeddings.
Args:
image_embeddings (`torch.Tensor`):
the embeddings from the image encoder
image_positional_embedding (`torch.Tensor`):
positional encoding with the shape of image_embeddings
sparse_prompt_embeddings (`torch.Tensor`):
The embeddings of the points and boxes
dense_prompt_embeddings (`torch.Tensor`):
the embeddings of the mask inputs
multimask_output (bool):
Whether to return multiple masks or a single mask.
output_attentions (bool, *optional*):
Whether or not to return the attentions tensors of all attention layers.
"""
batch_size, num_channels, height, width = image_embeddings.shape
point_batch_size = sparse_prompt_embeddings.shape[1]
# Concatenate output tokens
output_tokens = torch.cat([self.iou_token.weight, self.mask_tokens.weight], dim=0)
output_tokens = output_tokens.repeat(batch_size, point_batch_size, 1, 1)
if sparse_prompt_embeddings.sum().item() != 0:
tokens = torch.cat((output_tokens, sparse_prompt_embeddings), dim=2)
else:
tokens = output_tokens
point_embeddings = tokens.to(self.iou_token.weight.dtype)
# Expand per-image data in batch direction to be per-point
image_embeddings = image_embeddings + dense_prompt_embeddings
image_embeddings = image_embeddings.repeat_interleave(point_batch_size, 0)
image_positional_embeddings = image_positional_embeddings.repeat_interleave(point_batch_size, 0)
# Run the transformer, image_positional_embedding are consumed
point_embedding, image_embeddings, attentions = self.transformer(
point_embeddings=point_embeddings,
image_embeddings=image_embeddings,
image_positional_embeddings=image_positional_embeddings,
attention_similarity=attention_similarity,
target_embedding=target_embedding,
output_attentions=output_attentions,
)
iou_token_out = point_embedding[:, :, 0, :]
mask_tokens_out = point_embedding[:, :, 1 : (1 + self.num_mask_tokens), :]
# Upscale mask embeddings and predict masks using the mask tokens
image_embeddings = image_embeddings.transpose(2, 3).reshape(
batch_size * point_batch_size, num_channels, height, width
)
upscaled_embedding = self.upscale_conv1(image_embeddings)
upscaled_embedding = self.activation(self.upscale_layer_norm(upscaled_embedding))
upscaled_embedding = self.activation(self.upscale_conv2(upscaled_embedding))
hyper_in_list = []
for i in range(self.num_mask_tokens):
current_mlp = self.output_hypernetworks_mlps[i]
hyper_in_list += [current_mlp(mask_tokens_out[:, :, i, :])]
hyper_in = torch.stack(hyper_in_list, dim=2)
_, num_channels, height, width = upscaled_embedding.shape
upscaled_embedding = upscaled_embedding.reshape(batch_size, point_batch_size, num_channels, height * width)
masks = (hyper_in @ upscaled_embedding).reshape(batch_size, point_batch_size, -1, height, width)
# Generate mask quality predictions
iou_pred = self.iou_prediction_head(iou_token_out)
# Select the correct mask or masks for output
if multimask_output:
mask_slice = slice(1, None)
else:
mask_slice = slice(0, 1)
masks = masks[:, :, mask_slice, :, :]
iou_pred = iou_pred[:, :, mask_slice]
outputs = (masks, iou_pred)
if output_attentions:
outputs = outputs + (attentions,)
else:
outputs = outputs + (None,)
return outputs
class SamPositionalEmbedding(nn.Module):
def __init__(self, config):
super().__init__()
self.scale = config.hidden_size // 2
self.register_buffer("positional_embedding", self.scale * torch.randn((2, config.num_pos_feats)))
def forward(self, input_coords, input_shape=None):
"""Positionally encode points that are normalized to [0,1]."""
coordinates = input_coords.clone()
if input_shape is not None:
coordinates[:, :, :, 0] = coordinates[:, :, :, 0] / input_shape[1]
coordinates[:, :, :, 1] = coordinates[:, :, :, 1] / input_shape[0]
# assuming coords are in [0, 1]^2 square and have d_1 x ... x d_n x 2 shape
coordinates = 2 * coordinates - 1
coordinates = coordinates.to(self.positional_embedding.dtype)
coordinates = coordinates @ self.positional_embedding
coordinates = 2 * np.pi * coordinates
# outputs d_1 x ... x d_n x channel shape
return torch.cat([torch.sin(coordinates), torch.cos(coordinates)], dim=-1)
class SamMaskEmbedding(nn.Module):
def __init__(self, config: SamPromptEncoderConfig):
super().__init__()
self.mask_input_channels = config.mask_input_channels // 4
self.activation = ACT2FN[config.hidden_act]
self.conv1 = nn.Conv2d(1, self.mask_input_channels, kernel_size=2, stride=2)
self.conv2 = nn.Conv2d(self.mask_input_channels, config.mask_input_channels, kernel_size=2, stride=2)
self.conv3 = nn.Conv2d(config.mask_input_channels, config.hidden_size, kernel_size=1)
self.layer_norm1 = SamLayerNorm(
self.mask_input_channels, eps=config.layer_norm_eps, data_format="channels_first"
)
self.layer_norm2 = SamLayerNorm(
self.mask_input_channels * 4, eps=config.layer_norm_eps, data_format="channels_first"
)
def forward(self, masks):
hidden_states = self.conv1(masks)
hidden_states = self.layer_norm1(hidden_states)
hidden_states = self.activation(hidden_states)
hidden_states = self.conv2(hidden_states)
hidden_states = self.layer_norm2(hidden_states)
hidden_states = self.activation(hidden_states)
dense_embeddings = self.conv3(hidden_states)
return dense_embeddings
class SamPromptEncoder(nn.Module):
def __init__(self, config: SamPromptEncoderConfig, shared_patch_embedding):
super().__init__()
self.shared_embedding = shared_patch_embedding
self.mask_embed = SamMaskEmbedding(config)
self.no_mask_embed = nn.Embedding(1, config.hidden_size)
self.image_embedding_size = (config.image_embedding_size, config.image_embedding_size)
self.input_image_size = config.image_size
self.point_embed = nn.ModuleList(
[nn.Embedding(1, config.hidden_size) for i in range(config.num_point_embeddings)]
)
self.hidden_size = config.hidden_size
self.not_a_point_embed = nn.Embedding(1, config.hidden_size)
def _embed_points(self, points: torch.Tensor, labels: torch.Tensor, pad: bool) -> torch.Tensor:
"""Embeds point prompts."""
points = points + 0.5 # Shift to center of pixel
if pad:
target_point_shape = (points.shape[0], points.shape[1], 1, points.shape[-1])
target_labels_shape = (points.shape[0], points.shape[1], 1)
padding_point = torch.zeros(target_point_shape, device=points.device)
padding_label = -torch.ones(target_labels_shape, device=labels.device)
points = torch.cat([points, padding_point], dim=2)
labels = torch.cat([labels, padding_label], dim=2)
input_shape = (self.input_image_size, self.input_image_size)
point_embedding = self.shared_embedding(points, input_shape)
# torch.where and expanding the labels tensor is required by the ONNX export
point_embedding = torch.where(labels[..., None] == -1, self.not_a_point_embed.weight, point_embedding)
# This is required for the ONNX export. The dtype, device need to be explicitely
# specificed as otherwise torch.onnx.export interprets as double
point_embedding = torch.where(
labels[..., None] != -10,
point_embedding,
torch.tensor(0.0, dtype=point_embedding.dtype, device=point_embedding.device),
)
point_embedding = torch.where(
(labels == 0)[:, :, :, None],
point_embedding + self.point_embed[0].weight[None, None, :, :],
point_embedding,
)
point_embedding = torch.where(
(labels == 1)[:, :, :, None],
point_embedding + self.point_embed[1].weight[None, None, :, :],
point_embedding,
)
return point_embedding
def _embed_boxes(self, boxes: torch.Tensor) -> torch.Tensor:
"""Embeds box prompts."""
boxes = boxes + 0.5 # Shift to center of pixel
batch_size, nb_boxes = boxes.shape[:2]
coords = boxes.reshape(batch_size, nb_boxes, 2, 2)
input_shape = (self.input_image_size, self.input_image_size)
corner_embedding = self.shared_embedding(coords, input_shape)
corner_embedding[:, :, 0, :] += self.point_embed[2].weight
corner_embedding[:, :, 1, :] += self.point_embed[3].weight
return corner_embedding
def forward(
self,
input_points: Optional[Tuple[torch.Tensor, torch.Tensor]],
input_labels: Optional[torch.Tensor],
input_boxes: Optional[torch.Tensor],
input_masks: Optional[torch.Tensor],
) -> Tuple[torch.Tensor, torch.Tensor]:
"""
Embeds different types of prompts, returning both sparse and dense embeddings.
Args:
points (`torch.Tensor`, *optional*):
point coordinates and labels to embed.
boxes (`torch.Tensor`, *optional*):
boxes to embed
masks (`torch.Tensor`, *optional*):
masks to embed
"""
sparse_embeddings = None
batch_size = 1
target_device = self.shared_embedding.positional_embedding.device
if input_points is not None:
batch_size, point_batch_size = input_points.shape[:2]
if input_labels is None:
raise ValueError("If points are provided, labels must also be provided.")
point_embeddings = self._embed_points(input_points, input_labels, pad=(input_boxes is None))
sparse_embeddings = point_embeddings
if input_boxes is not None:
batch_size = input_boxes.shape[0]
box_embeddings = self._embed_boxes(input_boxes)
if sparse_embeddings is None:
sparse_embeddings = box_embeddings
else:
sparse_embeddings = torch.cat([sparse_embeddings, box_embeddings], dim=2)
if input_masks is not None:
dense_embeddings = self.mask_embed(input_masks)
else:
dense_embeddings = self.no_mask_embed.weight.reshape(1, -1, 1, 1).expand(
batch_size, -1, self.image_embedding_size[0], self.image_embedding_size[1]
)
if sparse_embeddings is None:
sparse_embeddings = torch.zeros((batch_size, 1, 1, self.hidden_size), device=target_device)
return sparse_embeddings, dense_embeddings
class SamVisionAttention(nn.Module):
"""Multi-head Attention block with relative position embeddings."""
def __init__(self, config, window_size):
super().__init__()
input_size = (
(config.image_size // config.patch_size, config.image_size // config.patch_size)
if window_size == 0
else (window_size, window_size)
)
self.num_attention_heads = config.num_attention_heads
head_dim = config.hidden_size // config.num_attention_heads
self.scale = head_dim**-0.5
self.dropout = config.attention_dropout
self.qkv = nn.Linear(config.hidden_size, config.hidden_size * 3, bias=config.qkv_bias)
self.proj = nn.Linear(config.hidden_size, config.hidden_size)
self.use_rel_pos = config.use_rel_pos
if self.use_rel_pos:
if input_size is None:
raise ValueError("Input size must be provided if using relative positional encoding.")
# initialize relative positional embeddings
self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim))
self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim))
def get_rel_pos(self, q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor:
"""
Get relative positional embeddings according to the relative positions of
query and key sizes.
Args:
q_size (int):
size of the query.
k_size (int):
size of key k.
rel_pos (`torch.Tensor`):
relative position embeddings (L, channel).
Returns:
Extracted positional embeddings according to relative positions.
"""
max_rel_dist = int(2 * max(q_size, k_size) - 1)
# Interpolate rel pos.
rel_pos_resized = F.interpolate(
rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1),
size=max_rel_dist,
mode="linear",
)
rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0)
# Scale the coords with short length if shapes for q and k are different.
q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0)
k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0)
relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
return rel_pos_resized[relative_coords.long()]
def add_decomposed_rel_pos(
self,
attn: torch.Tensor,
query: torch.Tensor,
rel_pos_h: torch.Tensor,
rel_pos_w: torch.Tensor,
q_size: Tuple[int, int],
k_size: Tuple[int, int],
) -> torch.Tensor:
"""
Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py
Args:
attn (`torch.Tensor`):
attention map.
query (`torch.Tensor`):
query q in the attention layer with shape (batch_size, query_height * query_width, channel).
rel_pos_h (`torch.Tensor`):
relative position embeddings (Lh, channel) for height axis.
rel_pos_w (`torch.Tensor`):
relative position embeddings (Lw, channel) for width axis.
q_size (tuple):
spatial sequence size of query q with (query_height, query_width).
k_size (tuple):
spatial sequence size of key k with (key_height, key_width).
Returns:
attn (`torch.Tensor`):
attention map with added relative positional embeddings.
"""
query_height, query_width = q_size
key_height, key_width = k_size
relative_position_height = self.get_rel_pos(query_height, key_height, rel_pos_h)
relative_position_width = self.get_rel_pos(query_width, key_width, rel_pos_w)
batch_size, _, dim = query.shape
reshaped_query = query.reshape(batch_size, query_height, query_width, dim)
rel_h = torch.einsum("bhwc,hkc->bhwk", reshaped_query, relative_position_height)
rel_w = torch.einsum("bhwc,wkc->bhwk", reshaped_query, relative_position_width)
attn = attn.reshape(batch_size, query_height, query_width, key_height, key_width)
attn = attn + rel_h[:, :, :, :, None] + rel_w[:, :, :, None, :]
attn = attn.reshape(batch_size, query_height * query_width, key_height * key_width)
return attn
def forward(self, hidden_states: torch.Tensor, output_attentions=False) -> torch.Tensor:
batch_size, height, width, _ = hidden_states.shape
# qkv with shape (3, batch_size, nHead, height * width, channel)
qkv = (
self.qkv(hidden_states)
.reshape(batch_size, height * width, 3, self.num_attention_heads, -1)
.permute(2, 0, 3, 1, 4)
)
# q, k, v with shape (batch_size * nHead, height * width, channel)
query, key, value = qkv.reshape(3, batch_size * self.num_attention_heads, height * width, -1).unbind(0)
attn_weights = (query * self.scale) @ key.transpose(-2, -1)
if self.use_rel_pos:
attn_weights = self.add_decomposed_rel_pos(
attn_weights, query, self.rel_pos_h, self.rel_pos_w, (height, width), (height, width)
)
attn_weights = torch.nn.functional.softmax(attn_weights, dtype=torch.float32, dim=-1).to(query.dtype)
attn_probs = nn.functional.dropout(attn_weights, p=self.dropout, training=self.training)
attn_output = (attn_probs @ value).reshape(batch_size, self.num_attention_heads, height, width, -1)
attn_output = attn_output.permute(0, 2, 3, 1, 4).reshape(batch_size, height, width, -1)
attn_output = self.proj(attn_output)
if output_attentions:
outputs = (attn_output, attn_weights)
else:
outputs = (attn_output, None)
return outputs
class SamVisionLayer(nn.Module):
def __init__(self, config, window_size):
super().__init__()
self.layer_norm1 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.attn = SamVisionAttention(config, window_size)
self.layer_norm2 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.mlp = SamMLPBlock(config)
self.window_size = window_size
def window_partition(self, hidden_states: torch.Tensor, window_size: int) -> Tuple[torch.Tensor, Tuple[int, int]]:
"""
Args:
Partition into non-overlapping windows with padding if needed.
hidden_states (tensor): input tokens with [batch_size, height, width, channel]. window_size (int): window
size.
Returns:
windows: windows after partition with [batch_size * num_windows, window_size, window_size, channel].
(pad_height, pad_width): padded height and width before partition
"""
batch_size, height, width, channel = hidden_states.shape
pad_h = (window_size - height % window_size) % window_size
pad_w = (window_size - width % window_size) % window_size
hidden_states = F.pad(hidden_states, (0, 0, 0, pad_w, 0, pad_h))
pad_height, pad_width = height + pad_h, width + pad_w
hidden_states = hidden_states.reshape(
batch_size, pad_height // window_size, window_size, pad_width // window_size, window_size, channel
)
windows = hidden_states.permute(0, 1, 3, 2, 4, 5).contiguous().reshape(-1, window_size, window_size, channel)
return windows, (pad_height, pad_width)
def window_unpartition(
self, windows: torch.Tensor, window_size: int, padding_shape: Tuple[int, int], original_shape: Tuple[int, int]
) -> torch.Tensor:
"""
Args:
Window unpartition into original sequences and removing padding.
hidden_states (tensor):
input tokens with [batch_size * num_windows, window_size, window_size, channel].
window_size (int):
window size.
padding_shape (Tuple):
padded height and width (pad_height, pad_width).
original_shape (Tuple): original height and width (height, width) before padding.
Returns:
hidden_states: unpartitioned sequences with [batch_size, height, width, channel].
"""
pad_height, pad_width = padding_shape
height, width = original_shape
batch_size = windows.shape[0] // (pad_height * pad_width // window_size // window_size)
hidden_states = windows.reshape(
batch_size, pad_height // window_size, pad_width // window_size, window_size, window_size, -1
)
hidden_states = (
hidden_states.permute(0, 1, 3, 2, 4, 5).contiguous().reshape(batch_size, pad_height, pad_width, -1)
)
hidden_states = hidden_states[:, :height, :width, :].contiguous()
return hidden_states
def forward(
self,
hidden_states: torch.Tensor,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.FloatTensor]:
residual = hidden_states
hidden_states = self.layer_norm1(hidden_states)
# Window partition
if self.window_size > 0:
height, width = hidden_states.shape[1], hidden_states.shape[2]
hidden_states, padding_shape = self.window_partition(hidden_states, self.window_size)
hidden_states, attn_weights = self.attn(
hidden_states=hidden_states,
output_attentions=output_attentions,
)
# Reverse window partition
if self.window_size > 0:
hidden_states = self.window_unpartition(hidden_states, self.window_size, padding_shape, (height, width))
hidden_states = residual + hidden_states
layernorm_output = self.layer_norm2(hidden_states)
hidden_states = hidden_states + self.mlp(layernorm_output)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_weights,)
return outputs
class SamVisionNeck(nn.Module):
def __init__(self, config: SamVisionConfig):
super().__init__()
self.config = config
self.conv1 = nn.Conv2d(config.hidden_size, config.output_channels, kernel_size=1, bias=False)
self.layer_norm1 = SamLayerNorm(config.output_channels, data_format="channels_first")
self.conv2 = nn.Conv2d(config.output_channels, config.output_channels, kernel_size=3, padding=1, bias=False)
self.layer_norm2 = SamLayerNorm(config.output_channels, data_format="channels_first")
def forward(self, hidden_states):
hidden_states = hidden_states.permute(0, 3, 1, 2)
hidden_states = self.conv1(hidden_states)
hidden_states = self.layer_norm1(hidden_states)
hidden_states = self.conv2(hidden_states)
hidden_states = self.layer_norm2(hidden_states)
return hidden_states
class SamVisionEncoder(nn.Module):
def __init__(self, config: SamVisionConfig):
super().__init__()
self.config = config
self.image_size = config.image_size
self.patch_embed = SamPatchEmbeddings(config)
self.pos_embed = None
if config.use_abs_pos:
# Initialize absolute positional embedding with pretrain image size.
self.pos_embed = nn.Parameter(
torch.zeros(
1,
config.image_size // config.patch_size,
config.image_size // config.patch_size,
config.hidden_size,
)
)
self.layers = nn.ModuleList()
for i in range(config.num_hidden_layers):
layer = SamVisionLayer(
config,
window_size=config.window_size if i not in config.global_attn_indexes else 0,
)
self.layers.append(layer)
self.neck = SamVisionNeck(config)
self.gradient_checkpointing = False
def get_input_embeddings(self):
return self.patch_embed
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple, SamVisionEncoderOutput]:
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None:
raise ValueError("You have to specify pixel_values")
hidden_states = self.patch_embed(pixel_values)
if self.pos_embed is not None:
hidden_states = hidden_states + self.pos_embed
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layers):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if self.gradient_checkpointing and self.training:
layer_outputs = self._gradient_checkpointing_func(
layer_module.__call__,
hidden_states,
)
else:
layer_outputs = layer_module(hidden_states, output_attentions=output_attentions)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
hidden_states = self.neck(hidden_states)
if not return_dict:
outputs = (hidden_states,)
if output_hidden_states:
outputs = outputs + (all_hidden_states,)
if output_attentions:
outputs = outputs + (all_self_attentions,)
return outputs
return SamVisionEncoderOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
)
class SamPreTrainedModel(PreTrainedModel):
config_class = SamConfig
base_model_prefix = "sam"
main_input_name = "pixel_values"
_no_split_modules = ["SamVisionAttention"]
def _init_weights(self, module):
std = self.config.initializer_range
if isinstance(module, (nn.Linear, nn.Conv2d, nn.ConvTranspose2d)):
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=std)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
SAM_START_DOCSTRING = r"""
This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads
etc.)
This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage
and behavior.
Parameters:
config ([`SamConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights.
"""
SAM_INPUTS_DOCSTRING = r"""
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Pixel values. Pixel values can be obtained using [`SamProcessor`]. See [`SamProcessor.__call__`] for
details.
input_points (`torch.FloatTensor` of shape `(batch_size, num_points, 2)`):
Input 2D spatial points, this is used by the prompt encoder to encode the prompt. Generally yields to much
better results. The points can be obtained by passing a list of list of list to the processor that will
create corresponding `torch` tensors of dimension 4. The first dimension is the image batch size, the
second dimension is the point batch size (i.e. how many segmentation masks do we want the model to predict
per input point), the third dimension is the number of points per segmentation mask (it is possible to pass
multiple points for a single mask), and the last dimension is the x (vertical) and y (horizontal)
coordinates of the point. If a different number of points is passed either for each image, or for each
mask, the processor will create "PAD" points that will correspond to the (0, 0) coordinate, and the
computation of the embedding will be skipped for these points using the labels.
input_labels (`torch.LongTensor` of shape `(batch_size, point_batch_size, num_points)`):
Input labels for the points, this is used by the prompt encoder to encode the prompt. According to the
official implementation, there are 3 types of labels
- `1`: the point is a point that contains the object of interest
- `0`: the point is a point that does not contain the object of interest
- `-1`: the point corresponds to the background
We added the label:
- `-10`: the point is a padding point, thus should be ignored by the prompt encoder
The padding labels should be automatically done by the processor.
input_boxes (`torch.FloatTensor` of shape `(batch_size, num_boxes, 4)`):
Input boxes for the points, this is used by the prompt encoder to encode the prompt. Generally yields to
much better generated masks. The boxes can be obtained by passing a list of list of list to the processor,
that will generate a `torch` tensor, with each dimension corresponding respectively to the image batch
size, the number of boxes per image and the coordinates of the top left and botton right point of the box.
In the order (`x1`, `y1`, `x2`, `y2`):
- `x1`: the x coordinate of the top left point of the input box
- `y1`: the y coordinate of the top left point of the input box
- `x2`: the x coordinate of the bottom right point of the input box
- `y2`: the y coordinate of the bottom right point of the input box
input_masks (`torch.FloatTensor` of shape `(batch_size, image_size, image_size)`):
SAM model also accepts segmentation masks as input. The mask will be embedded by the prompt encoder to
generate a corresponding embedding, that will be fed later on to the mask decoder. These masks needs to be
manually fed by the user, and they need to be of shape (`batch_size`, `image_size`, `image_size`).
image_embeddings (`torch.FloatTensor` of shape `(batch_size, output_channels, window_size, window_size)`):
Image embeddings, this is used by the mask decder to generate masks and iou scores. For more memory
efficient computation, users can first retrieve the image embeddings using the `get_image_embeddings`
method, and then feed them to the `forward` method instead of feeding the `pixel_values`.
multimask_output (`bool`, *optional*):
In the original implementation and paper, the model always outputs 3 masks per image (or per point / per
bounding box if relevant). However, it is possible to just output a single mask, that corresponds to the
"best" mask, by specifying `multimask_output=False`.
attention_similarity (`torch.FloatTensor`, *optional*):
Attention similarity tensor, to be provided to the mask decoder for target-guided attention in case the
model is used for personalization as introduced in [PerSAM](https://arxiv.org/abs/2305.03048).
target_embedding (`torch.FloatTensor`, *optional*):
Embedding of the target concept, to be provided to the mask decoder for target-semantic prompting in case
the model is used for personalization as introduced in [PerSAM](https://arxiv.org/abs/2305.03048).
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned
tensors for more detail.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for
more detail.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
@add_start_docstrings(
"Segment Anything Model (SAM) for generating segmentation masks, given an input image and ",
" optional 2D location and bounding boxes.",
SAM_START_DOCSTRING,
)
class SamModel(SamPreTrainedModel):
_tied_weights_keys = ["prompt_encoder.shared_embedding.positional_embedding"]
def __init__(self, config):
super().__init__(config)
self.shared_image_embedding = SamPositionalEmbedding(config.vision_config)
self.vision_encoder = SamVisionEncoder(config.vision_config)
self.prompt_encoder = SamPromptEncoder(config.prompt_encoder_config, self.shared_image_embedding)
self.mask_decoder = SamMaskDecoder(config.mask_decoder_config)
self.post_init()
def get_input_embeddings(self):
return self.vision_encoder.get_input_embeddings()
def get_image_wide_positional_embeddings(self):
size = self.config.prompt_encoder_config.image_embedding_size
target_device = self.shared_image_embedding.positional_embedding.device
target_dtype = self.shared_image_embedding.positional_embedding.dtype
grid = torch.ones((size, size), device=target_device, dtype=target_dtype)
y_embed = grid.cumsum(dim=0) - 0.5
x_embed = grid.cumsum(dim=1) - 0.5
y_embed = y_embed / size
x_embed = x_embed / size
positional_embedding = self.shared_image_embedding(torch.stack([x_embed, y_embed], dim=-1))
return positional_embedding.permute(2, 0, 1).unsqueeze(0) # channel x height x width
@torch.no_grad()
def get_image_embeddings(
self,
pixel_values,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
):
r"""
Returns the image embeddings by passing the pixel values through the vision encoder.
Args:
pixel_values (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
Input pixel values
output_attentions (`bool`, *optional*):
Whether or not to return the attentions tensors of all attention layers.
output_hidden_states (`bool`, *optional*):
Whether or not to return the hidden states of all layers.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
vision_output = self.vision_encoder(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeddings = vision_output[0]
return image_embeddings
@torch.no_grad()
def get_prompt_embeddings(
self,
input_points: Optional[torch.FloatTensor] = None,
input_labels: Optional[torch.LongTensor] = None,
input_boxes: Optional[torch.FloatTensor] = None,
input_masks: Optional[torch.LongTensor] = None,
):
r"""
Returns the prompt embeddings by passing the input points, labels, boxes and masks through the prompt encoder.
Args:
input_points (`torch.FloatTensor` of shape `(batch_size, point_batch_size, num_points_per_image, 2)`):
Optional input points for the prompt encoder. The padding of the point is automatically done by the
processor. `point_batch_size` refers to the number of masks that we want the model to predict per
point. The model will output `point_batch_size` times 3 masks in total.
input_labels (`torch.LongTensor` of shape `(batch_size, point_batch_size, num_points_per_image)`):
Optional input labels for the prompt encoder. The padding of the labels is automatically done by the
processor, or can be fed by the user.
input_boxes (`torch.FloatTensor` of shape `(batch_size, num_boxes_per_image, 4)`):
Optional input boxes for the prompt encoder. The padding of the boxes is automatically done by the
processor. users can also pass manually the input boxes.
input_masks (`torch.LongTensor` of shape `(batch_size, image_size, image_size)`):
Optional input masks for the prompt encoder.
"""
prompt_output = self.prompt_encoder(
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
input_masks=input_masks,
)
return prompt_output
@add_start_docstrings_to_model_forward(SAM_INPUTS_DOCSTRING)
def forward(
self,
pixel_values: Optional[torch.FloatTensor] = None,
input_points: Optional[torch.FloatTensor] = None,
input_labels: Optional[torch.LongTensor] = None,
input_boxes: Optional[torch.FloatTensor] = None,
input_masks: Optional[torch.LongTensor] = None,
image_embeddings: Optional[torch.FloatTensor] = None,
multimask_output: bool = True,
attention_similarity: Optional[torch.FloatTensor] = None,
target_embedding: Optional[torch.FloatTensor] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
**kwargs,
) -> List[Dict[str, torch.Tensor]]:
r"""
Example:
```python
>>> from PIL import Image
>>> import requests
>>> from transformers import AutoModel, AutoProcessor
>>> model = AutoModel.from_pretrained("facebook/sam-vit-base")
>>> processor = AutoProcessor.from_pretrained("facebook/sam-vit-base")
>>> img_url = "https://huggingface.co/datasets/huggingface/documentation-images/resolve/main/transformers/model_doc/sam-car.png"
>>> raw_image = Image.open(requests.get(img_url, stream=True).raw).convert("RGB")
>>> input_points = [[[400, 650]]] # 2D location of a window on the car
>>> inputs = processor(images=raw_image, input_points=input_points, return_tensors="pt")
>>> # Get segmentation mask
>>> outputs = model(**inputs)
>>> # Postprocess masks
>>> masks = processor.post_process_masks(
... outputs.pred_masks, inputs["original_sizes"], inputs["reshaped_input_sizes"]
... )
```
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if pixel_values is None and image_embeddings is None:
raise ValueError("Either pixel_values or image_embeddings must be provided.")
if pixel_values is not None and image_embeddings is not None:
raise ValueError("Only one of pixel_values and image_embeddings can be provided.")
if input_points is not None and len(input_points.shape) != 4:
raise ValueError(
"The input_points must be a 4D tensor. Of shape `batch_size`, `point_batch_size`, `nb_points_per_image`, `2`.",
" got {}.".format(input_points.shape),
)
if input_boxes is not None and len(input_boxes.shape) != 3:
raise ValueError(
"The input_points must be a 3D tensor. Of shape `batch_size`, `nb_boxes`, `4`.",
" got {}.".format(input_boxes.shape),
)
if input_points is not None and input_boxes is not None:
point_batch_size = input_points.shape[1]
box_batch_size = input_boxes.shape[1]
if point_batch_size != box_batch_size:
raise ValueError(
"You should provide as many bounding boxes as input points per box. Got {} and {}.".format(
point_batch_size, box_batch_size
)
)
image_positional_embeddings = self.get_image_wide_positional_embeddings()
# repeat with batch size
batch_size = pixel_values.shape[0] if pixel_values is not None else image_embeddings.shape[0]
image_positional_embeddings = image_positional_embeddings.repeat(batch_size, 1, 1, 1)
vision_attentions = None
vision_hidden_states = None
if pixel_values is not None:
vision_outputs = self.vision_encoder(
pixel_values,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
image_embeddings = vision_outputs[0]
if output_hidden_states:
vision_hidden_states = vision_outputs[1]
if output_attentions:
vision_attentions = vision_outputs[-1]
if input_points is not None and input_labels is None:
input_labels = torch.ones_like(input_points[:, :, :, 0], dtype=torch.int, device=input_points.device)
if input_points is not None and image_embeddings.shape[0] != input_points.shape[0]:
raise ValueError(
"The batch size of the image embeddings and the input points must be the same. ",
"Got {} and {} respectively.".format(image_embeddings.shape[0], input_points.shape[0]),
" if you want to pass multiple points for the same image, make sure that you passed ",
" input_points of shape (batch_size, point_batch_size, num_points_per_image, 3) and ",
" input_labels of shape (batch_size, point_batch_size, num_points_per_image)",
)
sparse_embeddings, dense_embeddings = self.prompt_encoder(
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
input_masks=input_masks,
)
low_res_masks, iou_predictions, mask_decoder_attentions = self.mask_decoder(
image_embeddings=image_embeddings,
image_positional_embeddings=image_positional_embeddings,
sparse_prompt_embeddings=sparse_embeddings,
dense_prompt_embeddings=dense_embeddings,
multimask_output=multimask_output,
attention_similarity=attention_similarity,
target_embedding=target_embedding,
output_attentions=output_attentions,
)
if not return_dict:
output = (iou_predictions, low_res_masks)
if output_hidden_states:
output = output + (vision_hidden_states,)
if output_attentions:
output = output + (vision_attentions, mask_decoder_attentions)
return output
return SamImageSegmentationOutput(
iou_scores=iou_predictions,
pred_masks=low_res_masks,
vision_hidden_states=vision_hidden_states,
vision_attentions=vision_attentions,
mask_decoder_attentions=mask_decoder_attentions,
)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/processing_sam.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Processor class for SAM.
"""
from copy import deepcopy
from typing import Optional, Union
import numpy as np
from ...processing_utils import ProcessorMixin
from ...tokenization_utils_base import BatchEncoding
from ...utils import TensorType, is_tf_available, is_torch_available
if is_torch_available():
import torch
if is_tf_available():
import tensorflow as tf
class SamProcessor(ProcessorMixin):
r"""
Constructs a SAM processor which wraps a SAM image processor and an 2D points & Bounding boxes processor into a
single processor.
[`SamProcessor`] offers all the functionalities of [`SamImageProcessor`]. See the docstring of
[`~SamImageProcessor.__call__`] for more information.
Args:
image_processor (`SamImageProcessor`):
An instance of [`SamImageProcessor`]. The image processor is a required input.
"""
attributes = ["image_processor"]
image_processor_class = "SamImageProcessor"
def __init__(self, image_processor):
super().__init__(image_processor)
self.current_processor = self.image_processor
self.point_pad_value = -10
self.target_size = self.image_processor.size["longest_edge"]
def __call__(
self,
images=None,
segmentation_maps=None,
input_points=None,
input_labels=None,
input_boxes=None,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs,
) -> BatchEncoding:
"""
This method uses [`SamImageProcessor.__call__`] method to prepare image(s) for the model. It also prepares 2D
points and bounding boxes for the model if they are provided.
"""
encoding_image_processor = self.image_processor(
images,
segmentation_maps=segmentation_maps,
return_tensors=return_tensors,
**kwargs,
)
# pop arguments that are not used in the foward but used nevertheless
original_sizes = encoding_image_processor["original_sizes"]
if hasattr(original_sizes, "numpy"): # Checks if Torch or TF tensor
original_sizes = original_sizes.numpy()
input_points, input_labels, input_boxes = self._check_and_preprocess_points(
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
)
encoding_image_processor = self._normalize_and_convert(
encoding_image_processor,
original_sizes,
input_points=input_points,
input_labels=input_labels,
input_boxes=input_boxes,
return_tensors=return_tensors,
)
return encoding_image_processor
def _normalize_and_convert(
self,
encoding_image_processor,
original_sizes,
input_points=None,
input_labels=None,
input_boxes=None,
return_tensors="pt",
):
if input_points is not None:
if len(original_sizes) != len(input_points):
input_points = [
self._normalize_coordinates(self.target_size, point, original_sizes[0]) for point in input_points
]
else:
input_points = [
self._normalize_coordinates(self.target_size, point, original_size)
for point, original_size in zip(input_points, original_sizes)
]
# check that all arrays have the same shape
if not all(point.shape == input_points[0].shape for point in input_points):
if input_labels is not None:
input_points, input_labels = self._pad_points_and_labels(input_points, input_labels)
input_points = np.array(input_points)
if input_labels is not None:
input_labels = np.array(input_labels)
if input_boxes is not None:
if len(original_sizes) != len(input_boxes):
input_boxes = [
self._normalize_coordinates(self.target_size, box, original_sizes[0], is_bounding_box=True)
for box in input_boxes
]
else:
input_boxes = [
self._normalize_coordinates(self.target_size, box, original_size, is_bounding_box=True)
for box, original_size in zip(input_boxes, original_sizes)
]
input_boxes = np.array(input_boxes)
if input_boxes is not None:
if return_tensors == "pt":
input_boxes = torch.from_numpy(input_boxes)
# boxes batch size of 1 by default
input_boxes = input_boxes.unsqueeze(1) if len(input_boxes.shape) != 3 else input_boxes
elif return_tensors == "tf":
input_boxes = tf.convert_to_tensor(input_boxes)
# boxes batch size of 1 by default
input_boxes = tf.expand_dims(input_boxes, 1) if len(input_boxes.shape) != 3 else input_boxes
encoding_image_processor.update({"input_boxes": input_boxes})
if input_points is not None:
if return_tensors == "pt":
input_points = torch.from_numpy(input_points)
# point batch size of 1 by default
input_points = input_points.unsqueeze(1) if len(input_points.shape) != 4 else input_points
elif return_tensors == "tf":
input_points = tf.convert_to_tensor(input_points)
# point batch size of 1 by default
input_points = tf.expand_dims(input_points, 1) if len(input_points.shape) != 4 else input_points
encoding_image_processor.update({"input_points": input_points})
if input_labels is not None:
if return_tensors == "pt":
input_labels = torch.from_numpy(input_labels)
# point batch size of 1 by default
input_labels = input_labels.unsqueeze(1) if len(input_labels.shape) != 3 else input_labels
elif return_tensors == "tf":
input_labels = tf.convert_to_tensor(input_labels)
# point batch size of 1 by default
input_labels = tf.expand_dims(input_labels, 1) if len(input_labels.shape) != 3 else input_labels
encoding_image_processor.update({"input_labels": input_labels})
return encoding_image_processor
def _pad_points_and_labels(self, input_points, input_labels):
r"""
The method pads the 2D points and labels to the maximum number of points in the batch.
"""
expected_nb_points = max([point.shape[0] for point in input_points])
processed_input_points = []
for i, point in enumerate(input_points):
if point.shape[0] != expected_nb_points:
point = np.concatenate(
[point, np.zeros((expected_nb_points - point.shape[0], 2)) + self.point_pad_value], axis=0
)
input_labels[i] = np.append(input_labels[i], [self.point_pad_value])
processed_input_points.append(point)
input_points = processed_input_points
return input_points, input_labels
def _normalize_coordinates(
self, target_size: int, coords: np.ndarray, original_size, is_bounding_box=False
) -> np.ndarray:
"""
Expects a numpy array of length 2 in the final dimension. Requires the original image size in (H, W) format.
"""
old_h, old_w = original_size
new_h, new_w = self.image_processor._get_preprocess_shape(original_size, longest_edge=target_size)
coords = deepcopy(coords).astype(float)
if is_bounding_box:
coords = coords.reshape(-1, 2, 2)
coords[..., 0] = coords[..., 0] * (new_w / old_w)
coords[..., 1] = coords[..., 1] * (new_h / old_h)
if is_bounding_box:
coords = coords.reshape(-1, 4)
return coords
def _check_and_preprocess_points(
self,
input_points=None,
input_labels=None,
input_boxes=None,
):
r"""
Check and preprocesses the 2D points, labels and bounding boxes. It checks if the input is valid and if they
are, it converts the coordinates of the points and bounding boxes. If a user passes directly a `torch.Tensor`,
it is converted to a `numpy.ndarray` and then to a `list`.
"""
if input_points is not None:
if hasattr(input_points, "numpy"): # Checks for TF or Torch tensor
input_points = input_points.numpy().tolist()
if not isinstance(input_points, list) or not isinstance(input_points[0], list):
raise ValueError("Input points must be a list of list of floating points.")
input_points = [np.array(input_point) for input_point in input_points]
else:
input_points = None
if input_labels is not None:
if hasattr(input_labels, "numpy"):
input_labels = input_labels.numpy().tolist()
if not isinstance(input_labels, list) or not isinstance(input_labels[0], list):
raise ValueError("Input labels must be a list of list integers.")
input_labels = [np.array(label) for label in input_labels]
else:
input_labels = None
if input_boxes is not None:
if hasattr(input_boxes, "numpy"):
input_boxes = input_boxes.numpy().tolist()
if (
not isinstance(input_boxes, list)
or not isinstance(input_boxes[0], list)
or not isinstance(input_boxes[0][0], list)
):
raise ValueError("Input boxes must be a list of list of list of floating points.")
input_boxes = [np.array(box).astype(np.float32) for box in input_boxes]
else:
input_boxes = None
return input_points, input_labels, input_boxes
@property
def model_input_names(self):
image_processor_input_names = self.image_processor.model_input_names
return list(dict.fromkeys(image_processor_input_names))
def post_process_masks(self, *args, **kwargs):
return self.image_processor.post_process_masks(*args, **kwargs)
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/configuration_sam.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" SAM model configuration"""
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
from ..deprecated._archive_maps import SAM_PRETRAINED_CONFIG_ARCHIVE_MAP # noqa: F401, E402
class SamPromptEncoderConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`SamPromptEncoder`]. The [`SamPromptEncoder`]
module is used to encode the input 2D points and bounding boxes. Instantiating a configuration defaults will yield
a similar configuration to that of the SAM-vit-h
[facebook/sam-vit-huge](https://huggingface.co/facebook/sam-vit-huge) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 256):
Dimensionality of the hidden states.
image_size (`int`, *optional*, defaults to 1024):
The expected output resolution of the image.
patch_size (`int`, *optional*, defaults to 16):
The size (resolution) of each patch.
mask_input_channels (`int`, *optional*, defaults to 16):
The number of channels to be fed to the `MaskDecoder` module.
num_point_embeddings (`int`, *optional*, defaults to 4):
The number of point embeddings to be used.
hidden_act (`str`, *optional*, defaults to `"gelu"`):
The non-linear activation function in the encoder and pooler.
"""
def __init__(
self,
hidden_size=256,
image_size=1024,
patch_size=16,
mask_input_channels=16,
num_point_embeddings=4,
hidden_act="gelu",
layer_norm_eps=1e-6,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.image_size = image_size
self.patch_size = patch_size
self.image_embedding_size = image_size // patch_size
self.mask_input_channels = mask_input_channels
self.num_point_embeddings = num_point_embeddings
self.hidden_act = hidden_act
self.layer_norm_eps = layer_norm_eps
class SamMaskDecoderConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`SamMaskDecoder`]. It is used to instantiate a SAM
mask decoder to the specified arguments, defining the model architecture. Instantiating a configuration defaults
will yield a similar configuration to that of the SAM-vit-h
[facebook/sam-vit-huge](https://huggingface.co/facebook/sam-vit-huge) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 256):
Dimensionality of the hidden states.
hidden_act (`str`, *optional*, defaults to `"relu"`):
The non-linear activation function used inside the `SamMaskDecoder` module.
mlp_dim (`int`, *optional*, defaults to 2048):
Dimensionality of the "intermediate" (i.e., feed-forward) layer in the Transformer encoder.
num_hidden_layers (`int`, *optional*, defaults to 2):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 8):
Number of attention heads for each attention layer in the Transformer encoder.
attention_downsample_rate (`int`, *optional*, defaults to 2):
The downsampling rate of the attention layer.
num_multimask_outputs (`int`, *optional*, defaults to 3):
The number of outputs from the `SamMaskDecoder` module. In the Segment Anything paper, this is set to 3.
iou_head_depth (`int`, *optional*, defaults to 3):
The number of layers in the IoU head module.
iou_head_hidden_dim (`int`, *optional*, defaults to 256):
The dimensionality of the hidden states in the IoU head module.
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
"""
def __init__(
self,
hidden_size=256,
hidden_act="relu",
mlp_dim=2048,
num_hidden_layers=2,
num_attention_heads=8,
attention_downsample_rate=2,
num_multimask_outputs=3,
iou_head_depth=3,
iou_head_hidden_dim=256,
layer_norm_eps=1e-6,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.hidden_act = hidden_act
self.mlp_dim = mlp_dim
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.attention_downsample_rate = attention_downsample_rate
self.num_multimask_outputs = num_multimask_outputs
self.iou_head_depth = iou_head_depth
self.iou_head_hidden_dim = iou_head_hidden_dim
self.layer_norm_eps = layer_norm_eps
class SamVisionConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`SamVisionModel`]. It is used to instantiate a SAM
vision encoder according to the specified arguments, defining the model architecture. Instantiating a configuration
defaults will yield a similar configuration to that of the SAM ViT-h
[facebook/sam-vit-huge](https://huggingface.co/facebook/sam-vit-huge) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
hidden_size (`int`, *optional*, defaults to 768):
Dimensionality of the encoder layers and the pooler layer.
output_channels (`int`, *optional*, defaults to 256):
Dimensionality of the output channels in the Patch Encoder.
num_hidden_layers (`int`, *optional*, defaults to 12):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 12):
Number of attention heads for each attention layer in the Transformer encoder.
num_channels (`int`, *optional*, defaults to 3):
Number of channels in the input image.
image_size (`int`, *optional*, defaults to 1024):
Expected resolution. Target size of the resized input image.
patch_size (`int`, *optional*, defaults to 16):
Size of the patches to be extracted from the input image.
hidden_act (`str`, *optional*, defaults to `"gelu"`):
The non-linear activation function (function or string)
layer_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the layer normalization layers.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
initializer_range (`float`, *optional*, defaults to 1e-10):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
qkv_bias (`bool`, *optional*, defaults to `True`):
Whether to add a bias to query, key, value projections.
mlp_ratio (`float`, *optional*, defaults to 4.0):
Ratio of mlp hidden dim to embedding dim.
use_abs_pos (`bool`, *optional*, defaults to `True`):
Whether to use absolute position embedding.
use_rel_pos (`bool`, *optional*, defaults to `True`):
Whether to use relative position embedding.
window_size (`int`, *optional*, defaults to 14):
Window size for relative position.
global_attn_indexes (`List[int]`, *optional*, defaults to `[2, 5, 8, 11]`):
The indexes of the global attention layers.
num_pos_feats (`int`, *optional*, defaults to 128):
The dimensionality of the position embedding.
mlp_dim (`int`, *optional*):
The dimensionality of the MLP layer in the Transformer encoder. If `None`, defaults to `mlp_ratio *
hidden_size`.
"""
def __init__(
self,
hidden_size=768,
output_channels=256,
num_hidden_layers=12,
num_attention_heads=12,
num_channels=3,
image_size=1024,
patch_size=16,
hidden_act="gelu",
layer_norm_eps=1e-06,
attention_dropout=0.0,
initializer_range=1e-10,
qkv_bias=True,
mlp_ratio=4.0,
use_abs_pos=True,
use_rel_pos=True,
window_size=14,
global_attn_indexes=[2, 5, 8, 11],
num_pos_feats=128,
mlp_dim=None,
**kwargs,
):
super().__init__(**kwargs)
self.hidden_size = hidden_size
self.output_channels = output_channels
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.num_channels = num_channels
self.image_size = image_size
self.patch_size = patch_size
self.hidden_act = hidden_act
self.layer_norm_eps = layer_norm_eps
self.attention_dropout = attention_dropout
self.initializer_range = initializer_range
self.qkv_bias = qkv_bias
self.mlp_ratio = mlp_ratio
self.use_abs_pos = use_abs_pos
self.use_rel_pos = use_rel_pos
self.window_size = window_size
self.global_attn_indexes = global_attn_indexes
self.num_pos_feats = num_pos_feats
self.mlp_dim = int(hidden_size * mlp_ratio) if mlp_dim is None else mlp_dim
class SamConfig(PretrainedConfig):
r"""
[`SamConfig`] is the configuration class to store the configuration of a [`SamModel`]. It is used to instantiate a
SAM model according to the specified arguments, defining the vision model, prompt-encoder model and mask decoder
configs. Instantiating a configuration with the defaults will yield a similar configuration to that of the
SAM-ViT-H [facebook/sam-vit-huge](https://huggingface.co/facebook/sam-vit-huge) architecture.
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vision_config (Union[`dict`, `SamVisionConfig`], *optional*):
Dictionary of configuration options used to initialize [`SamVisionConfig`].
prompt_encoder_config (Union[`dict`, `SamPromptEncoderConfig`], *optional*):
Dictionary of configuration options used to initialize [`SamPromptEncoderConfig`].
mask_decoder_config (Union[`dict`, `SamMaskDecoderConfig`], *optional*):
Dictionary of configuration options used to initialize [`SamMaskDecoderConfig`].
kwargs (*optional*):
Dictionary of keyword arguments.
Example:
```python
>>> from transformers import (
... SamVisionConfig,
... SamPromptEncoderConfig,
... SamMaskDecoderConfig,
... SamModel,
... )
>>> # Initializing a SamConfig with `"facebook/sam-vit-huge"` style configuration
>>> configuration = SamConfig()
>>> # Initializing a SamModel (with random weights) from the `"facebook/sam-vit-huge"` style configuration
>>> model = SamModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
>>> # We can also initialize a SamConfig from a SamVisionConfig, SamPromptEncoderConfig, and SamMaskDecoderConfig
>>> # Initializing SAM vision, SAM Q-Former and language model configurations
>>> vision_config = SamVisionConfig()
>>> prompt_encoder_config = SamPromptEncoderConfig()
>>> mask_decoder_config = SamMaskDecoderConfig()
>>> config = SamConfig(vision_config, prompt_encoder_config, mask_decoder_config)
```"""
model_type = "sam"
def __init__(
self,
vision_config=None,
prompt_encoder_config=None,
mask_decoder_config=None,
initializer_range=0.02,
**kwargs,
):
super().__init__(**kwargs)
vision_config = vision_config if vision_config is not None else {}
prompt_encoder_config = prompt_encoder_config if prompt_encoder_config is not None else {}
mask_decoder_config = mask_decoder_config if mask_decoder_config is not None else {}
if isinstance(vision_config, SamVisionConfig):
vision_config = vision_config.to_dict()
if isinstance(prompt_encoder_config, SamPromptEncoderConfig):
prompt_encoder_config = prompt_encoder_config.to_dict()
if isinstance(mask_decoder_config, SamMaskDecoderConfig):
mask_decoder_config = mask_decoder_config.to_dict()
self.vision_config = SamVisionConfig(**vision_config)
self.prompt_encoder_config = SamPromptEncoderConfig(**prompt_encoder_config)
self.mask_decoder_config = SamMaskDecoderConfig(**mask_decoder_config)
self.initializer_range = initializer_range
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/sam/image_processing_sam.py
|
# coding=utf-8
# Copyright 2023 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Image processor class for SAM."""
import math
from copy import deepcopy
from itertools import product
from typing import Any, Dict, List, Optional, Tuple, Union
import numpy as np
from ...image_processing_utils import BaseImageProcessor, BatchFeature, get_size_dict
from ...image_transforms import convert_to_rgb, pad, resize, to_channel_dimension_format
from ...image_utils import (
IMAGENET_DEFAULT_MEAN,
IMAGENET_DEFAULT_STD,
ChannelDimension,
ImageInput,
PILImageResampling,
get_image_size,
infer_channel_dimension_format,
is_scaled_image,
make_list_of_images,
to_numpy_array,
valid_images,
validate_kwargs,
validate_preprocess_arguments,
)
from ...utils import (
TensorType,
is_tf_available,
is_torch_available,
is_torchvision_available,
logging,
requires_backends,
)
if is_torch_available():
import torch
import torch.nn.functional as F
if is_torchvision_available():
from torchvision.ops.boxes import batched_nms
if is_tf_available():
import tensorflow as tf
from tensorflow.experimental import numpy as tnp
from ...tf_utils import flatten, shape_list
logger = logging.get_logger(__name__)
class SamImageProcessor(BaseImageProcessor):
r"""
Constructs a SAM image processor.
Args:
do_resize (`bool`, *optional*, defaults to `True`):
Whether to resize the image's (height, width) dimensions to the specified `size`. Can be overridden by the
`do_resize` parameter in the `preprocess` method.
size (`dict`, *optional*, defaults to `{"longest_edge": 1024}`):
Size of the output image after resizing. Resizes the longest edge of the image to match
`size["longest_edge"]` while maintaining the aspect ratio. Can be overridden by the `size` parameter in the
`preprocess` method.
mask_size (`dict`, *optional*, defaults to `{"longest_edge": 256}`):
Size of the output segmentation map after resizing. Resizes the longest edge of the image to match
`size["longest_edge"]` while maintaining the aspect ratio. Can be overridden by the `mask_size` parameter
in the `preprocess` method.
resample (`PILImageResampling`, *optional*, defaults to `Resampling.BILINEAR`):
Resampling filter to use if resizing the image. Can be overridden by the `resample` parameter in the
`preprocess` method.
do_rescale (`bool`, *optional*, defaults to `True`):
Wwhether to rescale the image by the specified scale `rescale_factor`. Can be overridden by the
`do_rescale` parameter in the `preprocess` method.
rescale_factor (`int` or `float`, *optional*, defaults to `1/255`):
Scale factor to use if rescaling the image. Only has an effect if `do_rescale` is set to `True`. Can be
overridden by the `rescale_factor` parameter in the `preprocess` method.
do_normalize (`bool`, *optional*, defaults to `True`):
Whether to normalize the image. Can be overridden by the `do_normalize` parameter in the `preprocess`
method. Can be overridden by the `do_normalize` parameter in the `preprocess` method.
image_mean (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_MEAN`):
Mean to use if normalizing the image. This is a float or list of floats the length of the number of
channels in the image. Can be overridden by the `image_mean` parameter in the `preprocess` method. Can be
overridden by the `image_mean` parameter in the `preprocess` method.
image_std (`float` or `List[float]`, *optional*, defaults to `IMAGENET_DEFAULT_STD`):
Standard deviation to use if normalizing the image. This is a float or list of floats the length of the
number of channels in the image. Can be overridden by the `image_std` parameter in the `preprocess` method.
Can be overridden by the `image_std` parameter in the `preprocess` method.
do_pad (`bool`, *optional*, defaults to `True`):
Whether to pad the image to the specified `pad_size`. Can be overridden by the `do_pad` parameter in the
`preprocess` method.
pad_size (`dict`, *optional*, defaults to `{"height": 1024, "width": 1024}`):
Size of the output image after padding. Can be overridden by the `pad_size` parameter in the `preprocess`
method.
mask_pad_size (`dict`, *optional*, defaults to `{"height": 256, "width": 256}`):
Size of the output segmentation map after padding. Can be overridden by the `mask_pad_size` parameter in
the `preprocess` method.
do_convert_rgb (`bool`, *optional*, defaults to `True`):
Whether to convert the image to RGB.
"""
model_input_names = ["pixel_values"]
def __init__(
self,
do_resize: bool = True,
size: Dict[str, int] = None,
mask_size: Dict[str, int] = None,
resample: PILImageResampling = PILImageResampling.BILINEAR,
do_rescale: bool = True,
rescale_factor: Union[int, float] = 1 / 255,
do_normalize: bool = True,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: bool = True,
pad_size: int = None,
mask_pad_size: int = None,
do_convert_rgb: bool = True,
**kwargs,
) -> None:
super().__init__(**kwargs)
size = size if size is not None else {"longest_edge": 1024}
size = get_size_dict(max_size=size, default_to_square=False) if not isinstance(size, dict) else size
pad_size = pad_size if pad_size is not None else {"height": 1024, "width": 1024}
pad_size = get_size_dict(pad_size, default_to_square=True)
mask_size = mask_size if mask_size is not None else {"longest_edge": 256}
mask_size = (
get_size_dict(max_size=mask_size, default_to_square=False)
if not isinstance(mask_size, dict)
else mask_size
)
mask_pad_size = mask_pad_size if mask_pad_size is not None else {"height": 256, "width": 256}
mask_pad_size = get_size_dict(mask_pad_size, default_to_square=True)
self.do_resize = do_resize
self.size = size
self.mask_size = mask_size
self.resample = resample
self.do_rescale = do_rescale
self.rescale_factor = rescale_factor
self.do_normalize = do_normalize
self.image_mean = image_mean if image_mean is not None else IMAGENET_DEFAULT_MEAN
self.image_std = image_std if image_std is not None else IMAGENET_DEFAULT_STD
self.do_pad = do_pad
self.pad_size = pad_size
self.mask_pad_size = mask_pad_size
self.do_convert_rgb = do_convert_rgb
self._valid_processor_keys = [
"images",
"segmentation_maps",
"do_resize",
"size",
"mask_size",
"resample",
"do_rescale",
"rescale_factor",
"do_normalize",
"image_mean",
"image_std",
"do_pad",
"pad_size",
"mask_pad_size",
"do_convert_rgb",
"return_tensors",
"data_format",
"input_data_format",
]
def pad_image(
self,
image: np.ndarray,
pad_size: Dict[str, int],
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Pad an image to `(pad_size["height"], pad_size["width"])` with zeros to the right and bottom.
Args:
image (`np.ndarray`):
Image to pad.
pad_size (`Dict[str, int]`):
Size of the output image after padding.
data_format (`str` or `ChannelDimension`, *optional*):
The data format of the image. Can be either "channels_first" or "channels_last". If `None`, the
`data_format` of the `image` will be used.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
output_height, output_width = pad_size["height"], pad_size["width"]
input_height, input_width = get_image_size(image, channel_dim=input_data_format)
pad_width = output_width - input_width
pad_height = output_height - input_height
padded_image = pad(
image,
((0, pad_height), (0, pad_width)),
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
return padded_image
def _get_preprocess_shape(self, old_shape: Tuple[int, int], longest_edge: int):
"""
Compute the output size given input size and target long side length.
"""
oldh, oldw = old_shape
scale = longest_edge * 1.0 / max(oldh, oldw)
newh, neww = oldh * scale, oldw * scale
newh = int(newh + 0.5)
neww = int(neww + 0.5)
return (newh, neww)
def resize(
self,
image: np.ndarray,
size: Dict[str, int],
resample: PILImageResampling = PILImageResampling.BICUBIC,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
) -> np.ndarray:
"""
Resize an image to `(size["height"], size["width"])`.
Args:
image (`np.ndarray`):
Image to resize.
size (`Dict[str, int]`):
Dictionary in the format `{"longest_edge": int}` specifying the size of the output image. The longest
edge of the image will be resized to the specified size, while the other edge will be resized to
maintain the aspect ratio.
resample:
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BILINEAR`.
data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the output image. If unset, the channel dimension format of the input
image is used. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
Returns:
`np.ndarray`: The resized image.
"""
size = get_size_dict(size)
if "longest_edge" not in size:
raise ValueError(f"The `size` dictionary must contain the key `longest_edge`. Got {size.keys()}")
input_size = get_image_size(image, channel_dim=input_data_format)
output_height, output_width = self._get_preprocess_shape(input_size, size["longest_edge"])
return resize(
image,
size=(output_height, output_width),
resample=resample,
data_format=data_format,
input_data_format=input_data_format,
**kwargs,
)
def _preprocess(
self,
image: ImageInput,
do_resize: bool,
do_rescale: bool,
do_normalize: bool,
size: Optional[Dict[str, int]] = None,
resample: PILImageResampling = None,
rescale_factor: Optional[float] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: Optional[bool] = None,
pad_size: Optional[Dict[str, int]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
):
if do_resize:
image = self.resize(image=image, size=size, resample=resample, input_data_format=input_data_format)
reshaped_input_size = get_image_size(image, channel_dim=input_data_format)
if do_rescale:
image = self.rescale(image=image, scale=rescale_factor, input_data_format=input_data_format)
if do_normalize:
image = self.normalize(image=image, mean=image_mean, std=image_std, input_data_format=input_data_format)
if do_pad:
image = self.pad_image(image=image, pad_size=pad_size, input_data_format=input_data_format)
return image, reshaped_input_size
def _preprocess_image(
self,
image: ImageInput,
do_resize: Optional[bool] = None,
size: Dict[str, int] = None,
resample: PILImageResampling = None,
do_rescale: bool = None,
rescale_factor: Optional[float] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: Optional[bool] = None,
pad_size: Optional[Dict[str, int]] = None,
do_convert_rgb: Optional[bool] = None,
data_format: Optional[Union[str, ChannelDimension]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Tuple[np.ndarray, Tuple[int, int], Tuple[int, int]]:
image = to_numpy_array(image)
# PIL RGBA images are converted to RGB
if do_convert_rgb:
image = convert_to_rgb(image)
# All transformations expect numpy arrays.
image = to_numpy_array(image)
if is_scaled_image(image) and do_rescale:
logger.warning_once(
"It looks like you are trying to rescale already rescaled images. If the input"
" images have pixel values between 0 and 1, set `do_rescale=False` to avoid rescaling them again."
)
if input_data_format is None:
input_data_format = infer_channel_dimension_format(image)
original_size = get_image_size(image, channel_dim=input_data_format)
image, reshaped_input_size = self._preprocess(
image=image,
do_resize=do_resize,
size=size,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
pad_size=pad_size,
input_data_format=input_data_format,
)
if data_format is not None:
image = to_channel_dimension_format(image, data_format, input_channel_dim=input_data_format)
return image, original_size, reshaped_input_size
def _preprocess_mask(
self,
segmentation_map: ImageInput,
do_resize: Optional[bool] = None,
mask_size: Dict[str, int] = None,
do_pad: Optional[bool] = None,
mask_pad_size: Optional[Dict[str, int]] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> np.ndarray:
segmentation_map = to_numpy_array(segmentation_map)
# Add channel dimension if missing - needed for certain transformations
if segmentation_map.ndim == 2:
added_channel_dim = True
segmentation_map = segmentation_map[None, ...]
input_data_format = ChannelDimension.FIRST
else:
added_channel_dim = False
if input_data_format is None:
input_data_format = infer_channel_dimension_format(segmentation_map, num_channels=1)
original_size = get_image_size(segmentation_map, channel_dim=input_data_format)
segmentation_map, _ = self._preprocess(
image=segmentation_map,
do_resize=do_resize,
size=mask_size,
resample=PILImageResampling.NEAREST,
do_rescale=False,
do_normalize=False,
do_pad=do_pad,
pad_size=mask_pad_size,
input_data_format=input_data_format,
)
# Remove extra channel dimension if added for processing
if added_channel_dim:
segmentation_map = segmentation_map.squeeze(0)
segmentation_map = segmentation_map.astype(np.int64)
return segmentation_map, original_size
def preprocess(
self,
images: ImageInput,
segmentation_maps: Optional[ImageInput] = None,
do_resize: Optional[bool] = None,
size: Optional[Dict[str, int]] = None,
mask_size: Optional[Dict[str, int]] = None,
resample: Optional["PILImageResampling"] = None,
do_rescale: Optional[bool] = None,
rescale_factor: Optional[Union[int, float]] = None,
do_normalize: Optional[bool] = None,
image_mean: Optional[Union[float, List[float]]] = None,
image_std: Optional[Union[float, List[float]]] = None,
do_pad: Optional[bool] = None,
pad_size: Optional[Dict[str, int]] = None,
mask_pad_size: Optional[Dict[str, int]] = None,
do_convert_rgb: Optional[bool] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
data_format: ChannelDimension = ChannelDimension.FIRST,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
**kwargs,
):
"""
Preprocess an image or batch of images.
Args:
images (`ImageInput`):
Image to preprocess. Expects a single or batch of images with pixel values ranging from 0 to 255. If
passing in images with pixel values between 0 and 1, set `do_rescale=False`.
segmentation_maps (`ImageInput`, *optional*):
Segmentation map to preprocess.
do_resize (`bool`, *optional*, defaults to `self.do_resize`):
Whether to resize the image.
size (`Dict[str, int]`, *optional*, defaults to `self.size`):
Controls the size of the image after `resize`. The longest edge of the image is resized to
`size["longest_edge"]` whilst preserving the aspect ratio.
mask_size (`Dict[str, int]`, *optional*, defaults to `self.mask_size`):
Controls the size of the segmentation map after `resize`. The longest edge of the image is resized to
`size["longest_edge"]` whilst preserving the aspect ratio.
resample (`PILImageResampling`, *optional*, defaults to `self.resample`):
`PILImageResampling` filter to use when resizing the image e.g. `PILImageResampling.BILINEAR`.
do_rescale (`bool`, *optional*, defaults to `self.do_rescale`):
Whether to rescale the image pixel values by rescaling factor.
rescale_factor (`int` or `float`, *optional*, defaults to `self.rescale_factor`):
Rescale factor to apply to the image pixel values.
do_normalize (`bool`, *optional*, defaults to `self.do_normalize`):
Whether to normalize the image.
image_mean (`float` or `List[float]`, *optional*, defaults to `self.image_mean`):
Image mean to normalize the image by if `do_normalize` is set to `True`.
image_std (`float` or `List[float]`, *optional*, defaults to `self.image_std`):
Image standard deviation to normalize the image by if `do_normalize` is set to `True`.
do_pad (`bool`, *optional*, defaults to `self.do_pad`):
Whether to pad the image.
pad_size (`Dict[str, int]`, *optional*, defaults to `self.pad_size`):
Controls the size of the padding applied to the image. The image is padded to `pad_size["height"]` and
`pad_size["width"]` if `do_pad` is set to `True`.
mask_pad_size (`Dict[str, int]`, *optional*, defaults to `self.mask_pad_size`):
Controls the size of the padding applied to the segmentation map. The image is padded to
`mask_pad_size["height"]` and `mask_pad_size["width"]` if `do_pad` is set to `True`.
do_convert_rgb (`bool`, *optional*, defaults to `self.do_convert_rgb`):
Whether to convert the image to RGB.
return_tensors (`str` or `TensorType`, *optional*):
The type of tensors to return. Can be one of:
- Unset: Return a list of `np.ndarray`.
- `TensorType.TENSORFLOW` or `'tf'`: Return a batch of type `tf.Tensor`.
- `TensorType.PYTORCH` or `'pt'`: Return a batch of type `torch.Tensor`.
- `TensorType.NUMPY` or `'np'`: Return a batch of type `np.ndarray`.
- `TensorType.JAX` or `'jax'`: Return a batch of type `jax.numpy.ndarray`.
data_format (`ChannelDimension` or `str`, *optional*, defaults to `ChannelDimension.FIRST`):
The channel dimension format for the output image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- Unset: Use the channel dimension format of the input image.
input_data_format (`ChannelDimension` or `str`, *optional*):
The channel dimension format for the input image. If unset, the channel dimension format is inferred
from the input image. Can be one of:
- `"channels_first"` or `ChannelDimension.FIRST`: image in (num_channels, height, width) format.
- `"channels_last"` or `ChannelDimension.LAST`: image in (height, width, num_channels) format.
- `"none"` or `ChannelDimension.NONE`: image in (height, width) format.
"""
do_resize = do_resize if do_resize is not None else self.do_resize
size = size if size is not None else self.size
size = get_size_dict(max_size=size, default_to_square=False) if not isinstance(size, dict) else size
mask_size = mask_size if mask_size is not None else self.mask_size
mask_size = (
get_size_dict(max_size=mask_size, default_to_square=False)
if not isinstance(mask_size, dict)
else mask_size
)
resample = resample if resample is not None else self.resample
do_rescale = do_rescale if do_rescale is not None else self.do_rescale
rescale_factor = rescale_factor if rescale_factor is not None else self.rescale_factor
do_normalize = do_normalize if do_normalize is not None else self.do_normalize
image_mean = image_mean if image_mean is not None else self.image_mean
image_std = image_std if image_std is not None else self.image_std
do_pad = do_pad if do_pad is not None else self.do_pad
pad_size = pad_size if pad_size is not None else self.pad_size
pad_size = get_size_dict(pad_size, default_to_square=True)
mask_pad_size = mask_pad_size if mask_pad_size is not None else self.mask_pad_size
mask_pad_size = get_size_dict(mask_pad_size, default_to_square=True)
do_convert_rgb = do_convert_rgb if do_convert_rgb is not None else self.do_convert_rgb
images = make_list_of_images(images)
validate_kwargs(captured_kwargs=kwargs.keys(), valid_processor_keys=self._valid_processor_keys)
if not valid_images(images):
raise ValueError(
"Invalid image type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
if segmentation_maps is not None:
segmentation_maps = make_list_of_images(segmentation_maps, expected_ndims=2)
if not valid_images(segmentation_maps):
raise ValueError(
"Invalid segmentation map type. Must be of type PIL.Image.Image, numpy.ndarray, "
"torch.Tensor, tf.Tensor or jax.ndarray."
)
validate_preprocess_arguments(
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
size_divisibility=pad_size, # Here _preprocess needs do_pad and pad_size.
do_resize=do_resize,
size=size,
resample=resample,
)
images, original_sizes, reshaped_input_sizes = zip(
*(
self._preprocess_image(
image=img,
do_resize=do_resize,
size=size,
resample=resample,
do_rescale=do_rescale,
rescale_factor=rescale_factor,
do_normalize=do_normalize,
image_mean=image_mean,
image_std=image_std,
do_pad=do_pad,
pad_size=pad_size,
do_convert_rgb=do_convert_rgb,
data_format=data_format,
input_data_format=input_data_format,
)
for img in images
)
)
data = {
"pixel_values": images,
"original_sizes": original_sizes,
"reshaped_input_sizes": reshaped_input_sizes,
}
if segmentation_maps is not None:
segmentation_maps, original_mask_sizes = zip(
*(
self._preprocess_mask(
segmentation_map=mask,
do_resize=do_resize,
mask_size=mask_size,
do_pad=do_pad,
mask_pad_size=mask_pad_size,
input_data_format=input_data_format,
)
for mask in segmentation_maps
)
)
# masks should start out the same size as input images
assert all(
original_im_size == original_mask_size
for original_im_size, original_mask_size in zip(original_sizes, original_mask_sizes)
), "Segmentation maps should be the same size as input images."
data["labels"] = segmentation_maps
return BatchFeature(data=data, tensor_type=return_tensors)
def post_process_masks(
self,
masks,
original_sizes,
reshaped_input_sizes,
mask_threshold=0.0,
binarize=True,
pad_size=None,
return_tensors="pt",
):
"""
Remove padding and upscale masks to the original image size.
Args:
masks (`Union[List[torch.Tensor], List[np.ndarray], List[tf.Tensor]]`):
Batched masks from the mask_decoder in (batch_size, num_channels, height, width) format.
original_sizes (`Union[torch.Tensor, tf.Tensor, List[Tuple[int,int]]]`):
The original sizes of each image before it was resized to the model's expected input shape, in (height,
width) format.
reshaped_input_sizes (`Union[torch.Tensor, tf.Tensor, List[Tuple[int,int]]]`):
The size of each image as it is fed to the model, in (height, width) format. Used to remove padding.
mask_threshold (`float`, *optional*, defaults to 0.0):
The threshold to use for binarizing the masks.
binarize (`bool`, *optional*, defaults to `True`):
Whether to binarize the masks.
pad_size (`int`, *optional*, defaults to `self.pad_size`):
The target size the images were padded to before being passed to the model. If None, the target size is
assumed to be the processor's `pad_size`.
return_tensors (`str`, *optional*, defaults to `"pt"`):
If `"pt"`, return PyTorch tensors. If `"tf"`, return TensorFlow tensors.
Returns:
(`Union[torch.Tensor, tf.Tensor]`): Batched masks in batch_size, num_channels, height, width) format, where
(height, width) is given by original_size.
"""
if return_tensors == "pt":
return self._post_process_masks_pt(
masks=masks,
original_sizes=original_sizes,
reshaped_input_sizes=reshaped_input_sizes,
mask_threshold=mask_threshold,
binarize=binarize,
pad_size=pad_size,
)
elif return_tensors == "tf":
return self._post_process_masks_tf(
masks=masks,
original_sizes=original_sizes,
reshaped_input_sizes=reshaped_input_sizes,
mask_threshold=mask_threshold,
binarize=binarize,
pad_size=pad_size,
)
else:
raise ValueError("return_tensors must be either 'pt' or 'tf'")
def _post_process_masks_pt(
self, masks, original_sizes, reshaped_input_sizes, mask_threshold=0.0, binarize=True, pad_size=None
):
"""
Remove padding and upscale masks to the original image size.
Args:
masks (`Union[List[torch.Tensor], List[np.ndarray]]`):
Batched masks from the mask_decoder in (batch_size, num_channels, height, width) format.
original_sizes (`Union[torch.Tensor, List[Tuple[int,int]]]`):
The original sizes of each image before it was resized to the model's expected input shape, in (height,
width) format.
reshaped_input_sizes (`Union[torch.Tensor, List[Tuple[int,int]]]`):
The size of each image as it is fed to the model, in (height, width) format. Used to remove padding.
mask_threshold (`float`, *optional*, defaults to 0.0):
The threshold to use for binarizing the masks.
binarize (`bool`, *optional*, defaults to `True`):
Whether to binarize the masks.
pad_size (`int`, *optional*, defaults to `self.pad_size`):
The target size the images were padded to before being passed to the model. If None, the target size is
assumed to be the processor's `pad_size`.
Returns:
(`torch.Tensor`): Batched masks in batch_size, num_channels, height, width) format, where (height, width)
is given by original_size.
"""
requires_backends(self, ["torch"])
pad_size = self.pad_size if pad_size is None else pad_size
target_image_size = (pad_size["height"], pad_size["width"])
if isinstance(original_sizes, (torch.Tensor, np.ndarray)):
original_sizes = original_sizes.tolist()
if isinstance(reshaped_input_sizes, (torch.Tensor, np.ndarray)):
reshaped_input_sizes = reshaped_input_sizes.tolist()
output_masks = []
for i, original_size in enumerate(original_sizes):
if isinstance(masks[i], np.ndarray):
masks[i] = torch.from_numpy(masks[i])
elif not isinstance(masks[i], torch.Tensor):
raise ValueError("Input masks should be a list of `torch.tensors` or a list of `np.ndarray`")
interpolated_mask = F.interpolate(masks[i], target_image_size, mode="bilinear", align_corners=False)
interpolated_mask = interpolated_mask[..., : reshaped_input_sizes[i][0], : reshaped_input_sizes[i][1]]
interpolated_mask = F.interpolate(interpolated_mask, original_size, mode="bilinear", align_corners=False)
if binarize:
interpolated_mask = interpolated_mask > mask_threshold
output_masks.append(interpolated_mask)
return output_masks
def _post_process_masks_tf(
self, masks, original_sizes, reshaped_input_sizes, mask_threshold=0.0, binarize=True, pad_size=None
):
"""
Remove padding and upscale masks to the original image size.
Args:
masks (`tf.Tensor`):
Batched masks from the mask_decoder in (batch_size, num_channels, height, width) format.
original_sizes (`tf.Tensor`):
The original size of the images before resizing for input to the model, in (height, width) format.
reshaped_input_sizes (`tf.Tensor`):
The size of the image input to the model, in (height, width) format. Used to remove padding.
mask_threshold (`float`, *optional*, defaults to 0.0):
The threshold to use for binarizing the masks.
binarize (`bool`, *optional*, defaults to `True`):
Whether to binarize the masks.
pad_size (`int`, *optional*, defaults to `self.pad_size`):
The target size the images were padded to before being passed to the model. If None, the target size is
assumed to be the processor's `pad_size`.
Returns:
(`tf.Tensor`): Batched masks in batch_size, num_channels, height, width) format, where (height, width) is
given by original_size.
"""
requires_backends(self, ["tf"])
pad_size = self.pad_size if pad_size is None else pad_size
target_image_size = (pad_size["height"], pad_size["width"])
output_masks = []
for i, original_size in enumerate(original_sizes):
# tf.image expects NHWC, we transpose the NCHW inputs for it
mask = tf.transpose(masks[i], perm=[0, 2, 3, 1])
interpolated_mask = tf.image.resize(mask, target_image_size, method="bilinear")
interpolated_mask = interpolated_mask[:, : reshaped_input_sizes[i][0], : reshaped_input_sizes[i][1], :]
interpolated_mask = tf.image.resize(interpolated_mask, original_size, method="bilinear")
if binarize:
interpolated_mask = interpolated_mask > mask_threshold
# And then we transpose them back at the end
output_masks.append(tf.transpose(interpolated_mask, perm=[0, 3, 1, 2]))
return output_masks
def post_process_for_mask_generation(
self, all_masks, all_scores, all_boxes, crops_nms_thresh, return_tensors="pt"
):
"""
Post processes mask that are generated by calling the Non Maximum Suppression algorithm on the predicted masks.
Args:
all_masks (`Union[List[torch.Tensor], List[tf.Tensor]]`):
List of all predicted segmentation masks
all_scores (`Union[List[torch.Tensor], List[tf.Tensor]]`):
List of all predicted iou scores
all_boxes (`Union[List[torch.Tensor], List[tf.Tensor]]`):
List of all bounding boxes of the predicted masks
crops_nms_thresh (`float`):
Threshold for NMS (Non Maximum Suppression) algorithm.
return_tensors (`str`, *optional*, defaults to `pt`):
If `pt`, returns `torch.Tensor`. If `tf`, returns `tf.Tensor`.
"""
if return_tensors == "pt":
return _postprocess_for_mg(all_masks, all_scores, all_boxes, crops_nms_thresh)
elif return_tensors == "tf":
return _postprocess_for_mg_tf(all_masks, all_scores, all_boxes, crops_nms_thresh)
def generate_crop_boxes(
self,
image,
target_size,
crop_n_layers: int = 0,
overlap_ratio: float = 512 / 1500,
points_per_crop: Optional[int] = 32,
crop_n_points_downscale_factor: Optional[List[int]] = 1,
device: Optional["torch.device"] = None,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
return_tensors: str = "pt",
):
"""
Generates a list of crop boxes of different sizes. Each layer has (2**i)**2 boxes for the ith layer.
Args:
image (`np.array`):
Input original image
target_size (`int`):
Target size of the resized image
crop_n_layers (`int`, *optional*, defaults to 0):
If >0, mask prediction will be run again on crops of the image. Sets the number of layers to run, where
each layer has 2**i_layer number of image crops.
overlap_ratio (`float`, *optional*, defaults to 512/1500):
Sets the degree to which crops overlap. In the first crop layer, crops will overlap by this fraction of
the image length. Later layers with more crops scale down this overlap.
points_per_crop (`int`, *optional*, defaults to 32):
Number of points to sample from each crop.
crop_n_points_downscale_factor (`List[int]`, *optional*, defaults to 1):
The number of points-per-side sampled in layer n is scaled down by crop_n_points_downscale_factor**n.
device (`torch.device`, *optional*, defaults to None):
Device to use for the computation. If None, cpu will be used.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
return_tensors (`str`, *optional*, defaults to `pt`):
If `pt`, returns `torch.Tensor`. If `tf`, returns `tf.Tensor`.
"""
crop_boxes, points_per_crop, cropped_images, input_labels = _generate_crop_boxes(
image,
target_size,
crop_n_layers,
overlap_ratio,
points_per_crop,
crop_n_points_downscale_factor,
input_data_format,
)
if return_tensors == "pt":
if device is None:
device = torch.device("cpu")
crop_boxes = torch.tensor(crop_boxes, device=device)
points_per_crop = torch.tensor(points_per_crop, device=device)
# cropped_images stays as np
input_labels = torch.tensor(input_labels, device=device)
elif return_tensors == "tf":
if device is not None:
raise ValueError("device is not a supported argument when return_tensors is tf!")
crop_boxes = tf.convert_to_tensor(crop_boxes)
points_per_crop = tf.convert_to_tensor(points_per_crop)
# cropped_images stays as np
input_labels = tf.convert_to_tensor(input_labels)
else:
raise ValueError("return_tensors must be either 'pt' or 'tf'.")
return crop_boxes, points_per_crop, cropped_images, input_labels
def filter_masks(
self,
masks,
iou_scores,
original_size,
cropped_box_image,
pred_iou_thresh=0.88,
stability_score_thresh=0.95,
mask_threshold=0,
stability_score_offset=1,
return_tensors="pt",
):
"""
Filters the predicted masks by selecting only the ones that meets several criteria. The first criterion being
that the iou scores needs to be greater than `pred_iou_thresh`. The second criterion is that the stability
score needs to be greater than `stability_score_thresh`. The method also converts the predicted masks to
bounding boxes and pad the predicted masks if necessary.
Args:
masks (`Union[torch.Tensor, tf.Tensor]`):
Input masks.
iou_scores (`Union[torch.Tensor, tf.Tensor]`):
List of IoU scores.
original_size (`Tuple[int,int]`):
Size of the orginal image.
cropped_box_image (`np.array`):
The cropped image.
pred_iou_thresh (`float`, *optional*, defaults to 0.88):
The threshold for the iou scores.
stability_score_thresh (`float`, *optional*, defaults to 0.95):
The threshold for the stability score.
mask_threshold (`float`, *optional*, defaults to 0):
The threshold for the predicted masks.
stability_score_offset (`float`, *optional*, defaults to 1):
The offset for the stability score used in the `_compute_stability_score` method.
return_tensors (`str`, *optional*, defaults to `pt`):
If `pt`, returns `torch.Tensor`. If `tf`, returns `tf.Tensor`.
"""
if return_tensors == "pt":
return self._filter_masks_pt(
masks=masks,
iou_scores=iou_scores,
original_size=original_size,
cropped_box_image=cropped_box_image,
pred_iou_thresh=pred_iou_thresh,
stability_score_thresh=stability_score_thresh,
mask_threshold=mask_threshold,
stability_score_offset=stability_score_offset,
)
elif return_tensors == "tf":
return self._filter_masks_tf(
masks=masks,
iou_scores=iou_scores,
original_size=original_size,
cropped_box_image=cropped_box_image,
pred_iou_thresh=pred_iou_thresh,
stability_score_thresh=stability_score_thresh,
mask_threshold=mask_threshold,
stability_score_offset=stability_score_offset,
)
def _filter_masks_pt(
self,
masks,
iou_scores,
original_size,
cropped_box_image,
pred_iou_thresh=0.88,
stability_score_thresh=0.95,
mask_threshold=0,
stability_score_offset=1,
):
"""
Filters the predicted masks by selecting only the ones that meets several criteria. The first criterion being
that the iou scores needs to be greater than `pred_iou_thresh`. The second criterion is that the stability
score needs to be greater than `stability_score_thresh`. The method also converts the predicted masks to
bounding boxes and pad the predicted masks if necessary.
Args:
masks (`torch.Tensor`):
Input masks.
iou_scores (`torch.Tensor`):
List of IoU scores.
original_size (`Tuple[int,int]`):
Size of the orginal image.
cropped_box_image (`np.array`):
The cropped image.
pred_iou_thresh (`float`, *optional*, defaults to 0.88):
The threshold for the iou scores.
stability_score_thresh (`float`, *optional*, defaults to 0.95):
The threshold for the stability score.
mask_threshold (`float`, *optional*, defaults to 0):
The threshold for the predicted masks.
stability_score_offset (`float`, *optional*, defaults to 1):
The offset for the stability score used in the `_compute_stability_score` method.
"""
requires_backends(self, ["torch"])
original_height, original_width = original_size
iou_scores = iou_scores.flatten(0, 1)
masks = masks.flatten(0, 1)
if masks.shape[0] != iou_scores.shape[0]:
raise ValueError("masks and iou_scores must have the same batch size.")
if masks.device != iou_scores.device:
iou_scores = iou_scores.to(masks.device)
batch_size = masks.shape[0]
keep_mask = torch.ones(batch_size, dtype=torch.bool, device=masks.device)
if pred_iou_thresh > 0.0:
keep_mask = keep_mask & (iou_scores > pred_iou_thresh)
# compute stability score
if stability_score_thresh > 0.0:
stability_scores = _compute_stability_score_pt(masks, mask_threshold, stability_score_offset)
keep_mask = keep_mask & (stability_scores > stability_score_thresh)
scores = iou_scores[keep_mask]
masks = masks[keep_mask]
# binarize masks
masks = masks > mask_threshold
converted_boxes = _batched_mask_to_box(masks)
keep_mask = ~_is_box_near_crop_edge(
converted_boxes, cropped_box_image, [0, 0, original_width, original_height]
)
scores = scores[keep_mask]
masks = masks[keep_mask]
converted_boxes = converted_boxes[keep_mask]
masks = _pad_masks(masks, cropped_box_image, original_height, original_width)
# conversion to rle is necessary to run non-maximum suppresion
masks = _mask_to_rle_pytorch(masks)
return masks, scores, converted_boxes
def _filter_masks_tf(
self,
masks,
iou_scores,
original_size,
cropped_box_image,
pred_iou_thresh=0.88,
stability_score_thresh=0.95,
mask_threshold=0,
stability_score_offset=1,
):
"""
Filters the predicted masks by selecting only the ones that meets several criteria. The first criterion being
that the iou scores needs to be greater than `pred_iou_thresh`. The second criterion is that the stability
score needs to be greater than `stability_score_thresh`. The method also converts the predicted masks to
bounding boxes and pad the predicted masks if necessary.
Args:
masks (`tf.Tensor`):
Input masks.
iou_scores (`tf.Tensor`):
List of IoU scores.
original_size (`Tuple[int,int]`):
Size of the orginal image.
cropped_box_image (`np.array`):
The cropped image.
pred_iou_thresh (`float`, *optional*, defaults to 0.88):
The threshold for the iou scores.
stability_score_thresh (`float`, *optional*, defaults to 0.95):
The threshold for the stability score.
mask_threshold (`float`, *optional*, defaults to 0):
The threshold for the predicted masks.
stability_score_offset (`float`, *optional*, defaults to 1):
The offset for the stability score used in the `_compute_stability_score` method.
"""
requires_backends(self, ["tf"])
original_height, original_width = original_size
iou_scores = tf.reshape(iou_scores, [iou_scores.shape[0] * iou_scores.shape[1], iou_scores.shape[2:]])
masks = tf.reshape(masks, [masks.shape[0] * masks.shape[1], masks.shape[2:]])
if masks.shape[0] != iou_scores.shape[0]:
raise ValueError("masks and iou_scores must have the same batch size.")
batch_size = masks.shape[0]
keep_mask = tf.ones(batch_size, dtype=tf.bool)
if pred_iou_thresh > 0.0:
keep_mask = keep_mask & (iou_scores > pred_iou_thresh)
# compute stability score
if stability_score_thresh > 0.0:
stability_scores = _compute_stability_score_tf(masks, mask_threshold, stability_score_offset)
keep_mask = keep_mask & (stability_scores > stability_score_thresh)
scores = iou_scores[keep_mask]
masks = masks[keep_mask]
# binarize masks
masks = masks > mask_threshold
converted_boxes = _batched_mask_to_box_tf(masks)
keep_mask = ~_is_box_near_crop_edge_tf(
converted_boxes, cropped_box_image, [0, 0, original_width, original_height]
)
scores = scores[keep_mask]
masks = masks[keep_mask]
converted_boxes = converted_boxes[keep_mask]
masks = _pad_masks_tf(masks, cropped_box_image, original_height, original_width)
# conversion to rle is necessary to run non-maximum suppresion
masks = _mask_to_rle_tf(masks)
return masks, scores, converted_boxes
def _compute_stability_score_pt(masks: "torch.Tensor", mask_threshold: float, stability_score_offset: int):
# One mask is always contained inside the other.
# Save memory by preventing unnecesary cast to torch.int64
intersections = (
(masks > (mask_threshold + stability_score_offset)).sum(-1, dtype=torch.int16).sum(-1, dtype=torch.int32)
)
unions = (masks > (mask_threshold - stability_score_offset)).sum(-1, dtype=torch.int16).sum(-1, dtype=torch.int32)
stability_scores = intersections / unions
return stability_scores
def _compute_stability_score_tf(masks: "tf.Tensor", mask_threshold: float, stability_score_offset: int):
# Torch does Py3-style division but TF does floor division with ints. We cast to float32 in TF to make sure
# we get the right division results.
intersections = tf.count_nonzero(
masks > (mask_threshold + stability_score_offset), axis=[-1, -2], dtype=tf.float32
)
unions = tf.count_nonzero(masks > (mask_threshold - stability_score_offset), axis=[-1, -2], dtype=tf.float32)
stability_scores = intersections / unions
return stability_scores
def _build_point_grid(n_per_side: int) -> np.ndarray:
"""Generates a 2D grid of points evenly spaced in [0,1]x[0,1]."""
offset = 1 / (2 * n_per_side)
points_one_side = np.linspace(offset, 1 - offset, n_per_side)
points_x = np.tile(points_one_side[None, :], (n_per_side, 1))
points_y = np.tile(points_one_side[:, None], (1, n_per_side))
points = np.stack([points_x, points_y], axis=-1).reshape(-1, 2)
return points
def _normalize_coordinates(
target_size: int, coords: np.ndarray, original_size: Tuple[int, int], is_bounding_box=False
) -> np.ndarray:
"""
Expects a numpy array of length 2 in the final dimension. Requires the original image size in (height, width)
format.
"""
old_height, old_width = original_size
scale = target_size * 1.0 / max(old_height, old_width)
new_height, new_width = old_height * scale, old_width * scale
new_width = int(new_width + 0.5)
new_height = int(new_height + 0.5)
coords = deepcopy(coords).astype(float)
if is_bounding_box:
coords = coords.reshape(-1, 2, 2)
coords[..., 0] = coords[..., 0] * (new_width / old_width)
coords[..., 1] = coords[..., 1] * (new_height / old_height)
if is_bounding_box:
coords = coords.reshape(-1, 4)
return coords
def _generate_crop_boxes(
image,
target_size: int, # Is it tuple here?
crop_n_layers: int = 0,
overlap_ratio: float = 512 / 1500,
points_per_crop: Optional[int] = 32,
crop_n_points_downscale_factor: Optional[List[int]] = 1,
input_data_format: Optional[Union[str, ChannelDimension]] = None,
) -> Tuple[List[List[int]], List[int]]:
"""
Generates a list of crop boxes of different sizes. Each layer has (2**i)**2 boxes for the ith layer.
Args:
image (Union[`numpy.ndarray`, `PIL.Image`, `torch.Tensor`]):
Image to generate crops for.
target_size (`int`):
Size of the smallest crop.
crop_n_layers (`int`, *optional*):
If `crops_n_layers>0`, mask prediction will be run again on crops of the image. Sets the number of layers
to run, where each layer has 2**i_layer number of image crops.
overlap_ratio (`int`, *optional*):
Sets the degree to which crops overlap. In the first crop layer, crops will overlap by this fraction of the
image length. Later layers with more crops scale down this overlap.
points_per_crop (`int`, *optional*):
Number of points to sample per crop.
crop_n_points_downscale_factor (`int`, *optional*):
The number of points-per-side sampled in layer n is scaled down by crop_n_points_downscale_factor**n.
input_data_format (`str` or `ChannelDimension`, *optional*):
The channel dimension format of the input image. If not provided, it will be inferred.
"""
if isinstance(image, list):
raise ValueError("Only one image is allowed for crop generation.")
image = to_numpy_array(image)
original_size = get_image_size(image, input_data_format)
points_grid = []
for i in range(crop_n_layers + 1):
n_points = int(points_per_crop / (crop_n_points_downscale_factor**i))
points_grid.append(_build_point_grid(n_points))
crop_boxes, layer_idxs = _generate_per_layer_crops(crop_n_layers, overlap_ratio, original_size)
cropped_images, point_grid_per_crop = _generate_crop_images(
crop_boxes, image, points_grid, layer_idxs, target_size, original_size, input_data_format
)
crop_boxes = np.array(crop_boxes)
crop_boxes = crop_boxes.astype(np.float32)
points_per_crop = np.array([point_grid_per_crop])
points_per_crop = np.transpose(points_per_crop, axes=(0, 2, 1, 3))
input_labels = np.ones_like(points_per_crop[:, :, :, 0], dtype=np.int64)
return crop_boxes, points_per_crop, cropped_images, input_labels
def _generate_per_layer_crops(crop_n_layers, overlap_ratio, original_size):
"""
Generates 2 ** (layers idx + 1) crops for each crop_n_layers. Crops are in the XYWH format : The XYWH format
consists of the following required indices:
- X: X coordinate of the top left of the bounding box
- Y: Y coordinate of the top left of the bounding box
- W: width of the bounding box
- H: height of the bounding box
"""
crop_boxes, layer_idxs = [], []
im_height, im_width = original_size
short_side = min(im_height, im_width)
# Original image
crop_boxes.append([0, 0, im_width, im_height])
layer_idxs.append(0)
for i_layer in range(crop_n_layers):
n_crops_per_side = 2 ** (i_layer + 1)
overlap = int(overlap_ratio * short_side * (2 / n_crops_per_side))
crop_width = int(math.ceil((overlap * (n_crops_per_side - 1) + im_width) / n_crops_per_side))
crop_height = int(math.ceil((overlap * (n_crops_per_side - 1) + im_height) / n_crops_per_side))
crop_box_x0 = [int((crop_width - overlap) * i) for i in range(n_crops_per_side)]
crop_box_y0 = [int((crop_height - overlap) * i) for i in range(n_crops_per_side)]
for left, top in product(crop_box_x0, crop_box_y0):
box = [left, top, min(left + crop_width, im_width), min(top + crop_height, im_height)]
crop_boxes.append(box)
layer_idxs.append(i_layer + 1)
return crop_boxes, layer_idxs
def _generate_crop_images(
crop_boxes, image, points_grid, layer_idxs, target_size, original_size, input_data_format=None
):
"""
Takes as an input bounding boxes that are used to crop the image. Based in the crops, the corresponding points are
also passed.
"""
cropped_images = []
total_points_per_crop = []
for i, crop_box in enumerate(crop_boxes):
left, top, right, bottom = crop_box
channel_dim = infer_channel_dimension_format(image, input_data_format)
if channel_dim == ChannelDimension.LAST:
cropped_im = image[top:bottom, left:right, :]
else:
cropped_im = image[:, top:bottom, left:right]
cropped_images.append(cropped_im)
cropped_im_size = get_image_size(cropped_im, channel_dim)
points_scale = np.array(cropped_im_size)[None, ::-1]
points = points_grid[layer_idxs[i]] * points_scale
normalized_points = _normalize_coordinates(target_size, points, original_size)
total_points_per_crop.append(normalized_points)
return cropped_images, total_points_per_crop
def _pad_masks(masks, crop_box: List[int], orig_height: int, orig_width: int):
left, top, right, bottom = crop_box
if left == 0 and top == 0 and right == orig_width and bottom == orig_height:
return masks
# Coordinate transform masks
pad_x, pad_y = orig_width - (right - left), orig_height - (bottom - top)
pad = (left, pad_x - left, top, pad_y - top)
return torch.nn.functional.pad(masks, pad, value=0)
def _pad_masks_tf(masks, crop_box: List[int], orig_height: int, orig_width: int):
left, top, right, bottom = crop_box
if left == 0 and top == 0 and right == orig_width and bottom == orig_height:
return masks
# Coordinate transform masks
pad_x, pad_y = orig_width - (right - left), orig_height - (bottom - top)
pad = (left, pad_x - left, top, pad_y - top)
return tf.pad(masks, pad, constant_values=0)
def _is_box_near_crop_edge(boxes, crop_box, orig_box, atol=20.0):
"""Filter masks at the edge of a crop, but not at the edge of the original image."""
crop_box_torch = torch.as_tensor(crop_box, dtype=torch.float, device=boxes.device)
orig_box_torch = torch.as_tensor(orig_box, dtype=torch.float, device=boxes.device)
left, top, _, _ = crop_box
offset = torch.tensor([[left, top, left, top]], device=boxes.device)
# Check if boxes has a channel dimension
if len(boxes.shape) == 3:
offset = offset.unsqueeze(1)
boxes = (boxes + offset).float()
near_crop_edge = torch.isclose(boxes, crop_box_torch[None, :], atol=atol, rtol=0)
near_image_edge = torch.isclose(boxes, orig_box_torch[None, :], atol=atol, rtol=0)
near_crop_edge = torch.logical_and(near_crop_edge, ~near_image_edge)
return torch.any(near_crop_edge, dim=1)
def _is_box_near_crop_edge_tf(boxes, crop_box, orig_box, atol=20.0):
"""Filter masks at the edge of a crop, but not at the edge of the original image."""
crop_box_tf = tf.convert_to_tensor(crop_box, dtype=tf.float32)
orig_box_tf = tf.convert_to_tensor(orig_box, dtype=tf.float32)
left, top, _, _ = crop_box
offset = tf.convert_to_tensor([[left, top, left, top]])
# Check if boxes has a channel dimension
if len(boxes.shape) == 3:
offset = tf.expand_dims(offset, 1)
boxes = tf.cast(boxes + offset, tf.float32)
near_crop_edge = tnp.isclose(boxes, crop_box_tf[None, :], atol=atol, rtol=0)
near_image_edge = tnp.isclose(boxes, orig_box_tf[None, :], atol=atol, rtol=0)
near_crop_edge = tf.math.logical_and(near_crop_edge, ~near_image_edge)
return tf.reduce_any(near_crop_edge, axis=1)
def _batched_mask_to_box(masks: "torch.Tensor"):
"""
Computes the bounding boxes around the given input masks. The bounding boxes are in the XYXY format which
corresponds the following required indices:
- LEFT: left hand side of the bounding box
- TOP: top of the bounding box
- RIGHT: right of the bounding box
- BOTTOM: bottom of the bounding box
Return [0,0,0,0] for an empty mask. For input shape channel_1 x channel_2 x ... x height x width, the output shape
is channel_1 x channel_2 x ... x 4.
Args:
- masks (`torch.Tensor` of shape `(batch, nb_mask, height, width)`)
"""
# torch.max below raises an error on empty inputs, just skip in this case
if torch.numel(masks) == 0:
return torch.zeros(*masks.shape[:-2], 4, device=masks.device)
# Normalize shape to Cxheightxwidth
shape = masks.shape
height, width = shape[-2:]
# Get top and bottom edges
in_height, _ = torch.max(masks, dim=-1)
in_height_coords = in_height * torch.arange(height, device=in_height.device)[None, :]
bottom_edges, _ = torch.max(in_height_coords, dim=-1)
in_height_coords = in_height_coords + height * (~in_height)
top_edges, _ = torch.min(in_height_coords, dim=-1)
# Get left and right edges
in_width, _ = torch.max(masks, dim=-2)
in_width_coords = in_width * torch.arange(width, device=in_width.device)[None, :]
right_edges, _ = torch.max(in_width_coords, dim=-1)
in_width_coords = in_width_coords + width * (~in_width)
left_edges, _ = torch.min(in_width_coords, dim=-1)
# If the mask is empty the right edge will be to the left of the left edge.
# Replace these boxes with [0, 0, 0, 0]
empty_filter = (right_edges < left_edges) | (bottom_edges < top_edges)
out = torch.stack([left_edges, top_edges, right_edges, bottom_edges], dim=-1)
out = out * (~empty_filter).unsqueeze(-1)
# Return to original shape
out = out.reshape(*shape[:-2], 4)
return out
def _batched_mask_to_box_tf(masks: "tf.Tensor"):
"""
Computes the bounding boxes around the given input masks. The bounding boxes are in the XYXY format which
corresponds the following required indices:
- LEFT: left hand side of the bounding box
- TOP: top of the bounding box
- RIGHT: right of the bounding box
- BOTTOM: bottom of the bounding box
Return [0,0,0,0] for an empty mask. For input shape channel_1 x channel_2 x ... x height x width, the output shape
is channel_1 x channel_2 x ... x 4.
Args:
- masks (`tf.Tensor` of shape `(batch, nb_mask, height, width)`)
"""
if tf.size(masks) == 0:
return tf.zeros([*masks.shape[:-2], 4])
# Normalize shape to Cxheightxwidth
shape = shape_list(masks)
height, width = shape[-2:]
# Get top and bottom edges
in_height = tf.reduce_max(masks, axis=-1)
in_height_coords = in_height * tf.range(height)[None, :]
bottom_edges = tf.reduce_max(in_height_coords, axis=-1)
in_height_coords = in_height_coords + height * (~in_height)
top_edges = tf.reduce_min(in_height_coords, axis=-1)
# Get left and right edges
in_width, _ = tf.reduce_max(masks, axis=-2)
in_width_coords = in_width * tf.range(width)[None, :]
right_edges, _ = tf.reduce_max(in_width_coords, axis=-1)
in_width_coords = in_width_coords + width * (~in_width)
left_edges, _ = tf.reduce_min(in_width_coords, axis=-1)
# If the mask is empty the right edge will be to the left of the left edge.
# Replace these boxes with [0, 0, 0, 0]
empty_filter = (right_edges < left_edges) | (bottom_edges < top_edges)
out = tf.stack([left_edges, top_edges, right_edges, bottom_edges], axis=-1)
out = out * tf.expand_dims(~empty_filter, -1)
# Return to original shape
out = tf.reshape(out, *shape[:-2], 4)
return out
def _mask_to_rle_pytorch(input_mask: "torch.Tensor"):
"""
Encodes masks the run-length encoding (RLE), in the format expected by pycoco tools.
"""
# Put in fortran order and flatten height and width
batch_size, height, width = input_mask.shape
input_mask = input_mask.permute(0, 2, 1).flatten(1)
# Compute change indices
diff = input_mask[:, 1:] ^ input_mask[:, :-1]
change_indices = diff.nonzero()
# Encode run length
out = []
for i in range(batch_size):
cur_idxs = change_indices[change_indices[:, 0] == i, 1] + 1
btw_idxs = cur_idxs[1:] - cur_idxs[:-1]
counts = [] if input_mask[i, 0] == 0 else [0]
counts += [cur_idxs[0].item()] + btw_idxs.tolist() + [height * width - cur_idxs[-1]]
out.append({"size": [height, width], "counts": counts})
return out
def _mask_to_rle_tf(input_mask: "tf.Tensor"):
"""
Encodes masks the run-length encoding (RLE), in the format expected by pycoco tools.
"""
# Put in fortran order and flatten height and width
batch_size, height, width = input_mask.shape
input_mask = flatten(tf.transpose(input_mask, perm=(0, 2, 1)), 1)
# Compute change indices
diff = input_mask[:, 1:] ^ input_mask[:, :-1]
change_indices = tf.where(diff)
# Encode run length
out = []
for i in range(batch_size):
cur_idxs = change_indices[change_indices[:, 0] == i, 1] + 1
btw_idxs = cur_idxs[1:] - cur_idxs[:-1]
counts = [] if input_mask[i, 0] == 0 else [0]
counts += [cur_idxs[0].item()] + btw_idxs.tolist() + [height * width - cur_idxs[-1]]
out.append({"size": [height, width], "counts": counts})
return out
def _rle_to_mask(rle: Dict[str, Any]) -> np.ndarray:
"""Compute a binary mask from an uncompressed RLE."""
height, width = rle["size"]
mask = np.empty(height * width, dtype=bool)
idx = 0
parity = False
for count in rle["counts"]:
mask[idx : idx + count] = parity
idx += count
parity = not parity
mask = mask.reshape(width, height)
return mask.transpose() # Reshape to original shape
def _postprocess_for_mg(rle_masks, iou_scores, mask_boxes, amg_crops_nms_thresh=0.7):
"""
Perform NMS (Non Maximum Suppression) on the outputs.
Args:
rle_masks (`torch.Tensor`):
binary masks in the RLE format
iou_scores (`torch.Tensor` of shape (nb_masks, 1)):
iou_scores predicted by the model
mask_boxes (`torch.Tensor`):
The bounding boxes corresponding to segmentation masks
amg_crops_nms_thresh (`float`, *optional*, defaults to 0.7):
NMS threshold.
"""
keep_by_nms = batched_nms(
boxes=mask_boxes.float(),
scores=iou_scores,
idxs=torch.zeros(mask_boxes.shape[0]),
iou_threshold=amg_crops_nms_thresh,
)
iou_scores = iou_scores[keep_by_nms]
rle_masks = [rle_masks[i] for i in keep_by_nms]
mask_boxes = mask_boxes[keep_by_nms]
masks = [_rle_to_mask(rle) for rle in rle_masks]
return masks, iou_scores, rle_masks, mask_boxes
def _postprocess_for_mg_tf(rle_masks, iou_scores, mask_boxes, amg_crops_nms_thresh=0.7):
"""
Perform NMS (Non Maximum Suppression) on the outputs.
Args:
rle_masks (`tf.Tensor`):
binary masks in the RLE format
iou_scores (`tf.Tensor` of shape (nb_masks, 1)):
iou_scores predicted by the model
mask_boxes (`tf.Tensor`):
The bounding boxes corresponding to segmentation masks
amg_crops_nms_thresh (`float`, *optional*, defaults to 0.7):
NMS threshold.
"""
keep_by_nms = tf.image.combined_non_max_suppression(
boxes=mask_boxes.float(),
scores=iou_scores,
idxs=torch.zeros(mask_boxes.shape[0]),
iou_threshold=amg_crops_nms_thresh,
)
iou_scores = iou_scores[keep_by_nms]
rle_masks = [rle_masks[i] for i in keep_by_nms]
mask_boxes = mask_boxes[keep_by_nms]
masks = [_rle_to_mask(rle) for rle in rle_masks]
return masks, iou_scores, rle_masks, mask_boxes
| 0
|
mavonic_private_repos/transformers/src/transformers/models
|
mavonic_private_repos/transformers/src/transformers/models/jamba/configuration_jamba.py
|
# coding=utf-8
# Copyright 2024 AI21 Labs Ltd. and the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Jamba model configuration"""
import math
from ...configuration_utils import PretrainedConfig
from ...utils import logging
logger = logging.get_logger(__name__)
class JambaConfig(PretrainedConfig):
r"""
This is the configuration class to store the configuration of a [`JambaModel`]. It is used to instantiate a
Jamba model according to the specified arguments, defining the model architecture. Instantiating a configuration
with the defaults will yield a similar configuration to that of the Jamba-v0.1 model.
[ai21labs/Jamba-v0.1](https://huggingface.co/ai21labs/Jamba-v0.1)
Configuration objects inherit from [`PretrainedConfig`] and can be used to control the model outputs. Read the
documentation from [`PretrainedConfig`] for more information.
Args:
vocab_size (`int`, *optional*, defaults to 65536):
Vocabulary size of the Jamba model. Defines the number of different tokens that can be represented by the
`inputs_ids` passed when calling [`JambaModel`]
tie_word_embeddings (`bool`, *optional*, defaults to `False`):
Whether the model's input and output word embeddings should be tied. Note that this is only relevant if the
model has a output word embedding layer.
hidden_size (`int`, *optional*, defaults to 4096):
Dimension of the hidden representations.
intermediate_size (`int`, *optional*, defaults to 14336):
Dimension of the MLP representations.
num_hidden_layers (`int`, *optional*, defaults to 32):
Number of hidden layers in the Transformer encoder.
num_attention_heads (`int`, *optional*, defaults to 32):
Number of attention heads for each attention layer in the Transformer encoder.
num_key_value_heads (`int`, *optional*, defaults to 8):
This is the number of key_value heads that should be used to implement Grouped Query Attention. If
`num_key_value_heads=num_attention_heads`, the model will use Multi Head Attention (MHA), if
`num_key_value_heads=1 the model will use Multi Query Attention (MQA) otherwise GQA is used. When
converting a multi-head checkpoint to a GQA checkpoint, each group key and value head should be constructed
by meanpooling all the original heads within that group. For more details checkout [this
paper](https://arxiv.org/pdf/2305.13245.pdf). If it is not specified, will default to `8`.
hidden_act (`str` or `function`, *optional*, defaults to `"silu"`):
The non-linear activation function (function or string) in the decoder.
initializer_range (`float`, *optional*, defaults to 0.02):
The standard deviation of the truncated_normal_initializer for initializing all weight matrices.
rms_norm_eps (`float`, *optional*, defaults to 1e-06):
The epsilon used by the rms normalization layers.
use_cache (`bool`, *optional*, defaults to `True`):
Whether or not the model should return the last key/values attentions (not used by all models). Only
relevant if `config.is_decoder=True`.
num_logits_to_keep (`int` or `None`, *optional*, defaults to 1):
Number of prompt logits to calculate during generation. If `None`, all logits will be calculated. If an
integer value, only last `num_logits_to_keep` logits will be calculated. Default is 1 because only the
logits of the last prompt token are needed for generation. For long sequences, the logits for the entire
sequence may use a lot of memory so, setting `num_logits_to_keep=1` will reduce memory footprint
significantly.
output_router_logits (`bool`, *optional*, defaults to `False`):
Whether or not the router logits should be returned by the model. Enabling this will also
allow the model to output the auxiliary loss. See [here]() for more details
router_aux_loss_coef (`float`, *optional*, defaults to 0.001):
The aux loss factor for the total loss.
pad_token_id (`int`, *optional*, defaults to 0):
The id of the padding token.
bos_token_id (`int`, *optional*, defaults to 1):
The id of the "beginning-of-sequence" token.
eos_token_id (`int`, *optional*, defaults to 2):
The id of the "end-of-sequence" token.
sliding_window (`int`, *optional*):
Sliding window attention window size. If not specified, will default to `None`.
max_position_embeddings (`int`, *optional*, defaults to 262144):
This value doesn't have any real effect. The maximum sequence length that this model is intended to be
used with. It can be used with longer sequences, but performance may degrade.
attention_dropout (`float`, *optional*, defaults to 0.0):
The dropout ratio for the attention probabilities.
num_experts_per_tok (`int`, *optional*, defaults to 2):
The number of experts to root per-token, can be also interpreted as the `top-p` routing
parameter
num_experts (`int`, *optional*, defaults to 16):
Number of experts per Sparse MLP layer.
expert_layer_period (`int`, *optional*, defaults to 2):
Once in this many layers, we will have an expert layer
expert_layer_offset (`int`, *optional*, defaults to 1):
The first layer index that contains an expert mlp layer
attn_layer_period (`int`, *optional*, defaults to 8):
Once in this many layers, we will have a vanilla attention layer
attn_layer_offset (`int`, *optional*, defaults to 4):
The first layer index that contains a vanilla attention mlp layer
use_mamba_kernels (`bool`, *optional*, defaults to `True`):
Flag indicating whether or not to use the fast mamba kernels. These are available only if `mamba-ssm` and
`causal-conv1d` are installed, and the mamba modules are running on a CUDA device. Raises ValueError if
`True` and kernels are not available
mamba_d_state (`int`, *optional*, defaults to 16):
The dimension the mamba state space latents
mamba_d_conv (`int`, *optional*, defaults to 4):
The size of the mamba convolution kernel
mamba_expand (`int`, *optional*, defaults to 2):
Expanding factor (relative to hidden_size) used to determine the mamba intermediate size
mamba_dt_rank (`Union[int,str]`, *optional*, defaults to `"auto"`):
Rank of the the mamba discretization projection matrix. `"auto"` means that it will default to `math.ceil(self.hidden_size / 16)`
mamba_conv_bias (`bool`, *optional*, defaults to `True`):
Flag indicating whether or not to use bias in the convolution layer of the mamba mixer block.
mamba_proj_bias (`bool`, *optional*, defaults to `False`):
Flag indicating whether or not to use bias in the input and output projections (["in_proj", "out_proj"]) of the mamba mixer block
"""
model_type = "jamba"
keys_to_ignore_at_inference = ["past_key_values"]
def __init__(
self,
vocab_size=65536,
tie_word_embeddings=False,
hidden_size=4096,
intermediate_size=14336,
num_hidden_layers=32,
num_attention_heads=32,
num_key_value_heads=8,
hidden_act="silu",
initializer_range=0.02,
rms_norm_eps=1e-6,
use_cache=True,
num_logits_to_keep=1,
output_router_logits=False,
router_aux_loss_coef=0.001,
pad_token_id=0,
bos_token_id=1,
eos_token_id=2,
sliding_window=None,
max_position_embeddings=262144,
attention_dropout=0.0,
num_experts_per_tok=2,
num_experts=16,
expert_layer_period=2,
expert_layer_offset=1,
attn_layer_period=8,
attn_layer_offset=4,
use_mamba_kernels=True,
mamba_d_state=16,
mamba_d_conv=4,
mamba_expand=2,
mamba_dt_rank="auto",
mamba_conv_bias=True,
mamba_proj_bias=False,
**kwargs,
):
self.vocab_size = vocab_size
self.tie_word_embeddings = tie_word_embeddings
self.hidden_size = hidden_size
self.intermediate_size = intermediate_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.sliding_window = sliding_window
self.max_position_embeddings = max_position_embeddings
self.attention_dropout = attention_dropout
# for backward compatibility
if num_key_value_heads is None:
num_key_value_heads = num_attention_heads
self.num_key_value_heads = num_key_value_heads
self.hidden_act = hidden_act
self.initializer_range = initializer_range
self.rms_norm_eps = rms_norm_eps
self.use_cache = use_cache
self.num_logits_to_keep = num_logits_to_keep
self.output_router_logits = output_router_logits
self.router_aux_loss_coef = router_aux_loss_coef
self.num_experts_per_tok = num_experts_per_tok
self.num_experts = num_experts
self.expert_layer_period = expert_layer_period
self.expert_layer_offset = expert_layer_offset
self.attn_layer_period = attn_layer_period
self.attn_layer_offset = attn_layer_offset
self.use_mamba_kernels = use_mamba_kernels
self.mamba_d_state = mamba_d_state
self.mamba_d_conv = mamba_d_conv
self.mamba_expand = mamba_expand
self.mamba_dt_rank = math.ceil(self.hidden_size / 16) if mamba_dt_rank == "auto" else mamba_dt_rank
self.mamba_conv_bias = mamba_conv_bias
self.mamba_proj_bias = mamba_proj_bias
super().__init__(
pad_token_id=pad_token_id,
bos_token_id=bos_token_id,
eos_token_id=eos_token_id,
tie_word_embeddings=tie_word_embeddings,
**kwargs,
)
@property
def layers_block_type(self):
return [
"attention" if i % self.attn_layer_period == self.attn_layer_offset else "mamba"
for i in range(self.num_hidden_layers)
]
@property
def layers_num_experts(self):
return [
self.num_experts if i % self.expert_layer_period == self.expert_layer_offset else 1
for i in range(self.num_hidden_layers)
]
| 0
|
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