File size: 464 Bytes
7c481e7 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | run:
name: ppi_benchmark
output_dir: results/ppi_benchmark
random_seed: 20260415
batch_size: 8
benchmark:
benchmark_type: peptide_like
target:
protein_name: MDM2
target_id: mdm2_ppi_benchmark
docking_target_path: data/targets/ppi_benchmark/mdm2_1ycr.pdb
reference:
reference_pdb_id: "1YCR"
receptor_chain_id: "A"
peptide_chain_id: "B"
n_variants: 50
min_length: 8
max_length: 20
disk_guard:
min_free_gb: 8.0
force_cleanup: true
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