| run: | |
| name: ppi_sanity_check | |
| output_dir: results/ppi_sanity_check | |
| random_seed: 20260415 | |
| batch_size: 8 | |
| benchmark: | |
| benchmark_type: peptide_like | |
| target: | |
| protein_name: MDM2 | |
| target_id: mdm2_ppi_sanity | |
| docking_target_path: data/targets/ppi_sanity_check/mdm2_1ycr.pdb | |
| reference: | |
| reference_pdb_id: "1YCR" | |
| receptor_chain_id: "A" | |
| peptide_chain_id: "B" | |
| n_variants: 40 | |
| min_length: 8 | |
| max_length: 20 | |
| disk_guard: | |
| min_free_gb: 8.0 | |