Docking_project / libs /adaptive /surrogate_model.py
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from __future__ import annotations
from dataclasses import dataclass
from typing import Dict, List, Optional
import numpy as np
from sklearn.ensemble import RandomForestRegressor
try:
from xgboost import XGBRegressor
except Exception: # pragma: no cover
XGBRegressor = None # type: ignore[assignment]
@dataclass
class SurrogateConfig:
prefer_xgboost: bool = True
random_state: int = 42
n_estimators: int = 200
min_train_samples: int = 8
max_depth_small: int = 3
max_depth_large: int = 6
class SurrogateModel:
"""Surrogate model with explicit missing-feature masking support."""
def __init__(self, config: Optional[SurrogateConfig] = None):
self.config = config or SurrogateConfig()
self.model = None
self.backend = "uninitialized"
self.feature_names: List[str] = []
self.mask_names: List[str] = []
self._median: np.ndarray | None = None
self._iqr: np.ndarray | None = None
self._train_x: np.ndarray | None = None
self._train_y: np.ndarray | None = None
self.last_fit_stats: Dict[str, float] = {}
def _build_model(self, n_samples: int):
max_depth = self.config.max_depth_small if n_samples < 50 else self.config.max_depth_large
if self.config.prefer_xgboost and XGBRegressor is not None:
self.backend = "xgboost"
return XGBRegressor(
n_estimators=self.config.n_estimators,
max_depth=max_depth,
learning_rate=0.05,
subsample=0.9,
colsample_bytree=0.9,
reg_alpha=0.1,
reg_lambda=1.0,
random_state=self.config.random_state,
)
self.backend = "random_forest"
return RandomForestRegressor(
n_estimators=max(100, self.config.n_estimators),
max_depth=max_depth,
random_state=self.config.random_state,
n_jobs=-1,
)
def _fit_normalizer(self, x: np.ndarray, m: np.ndarray) -> None:
med = []
iqr = []
for j in range(x.shape[1]):
vals = x[m[:, j] > 0.5, j]
if vals.size == 0:
med.append(0.0)
iqr.append(1.0)
continue
q1 = float(np.quantile(vals, 0.25))
q3 = float(np.quantile(vals, 0.75))
inter = max(1e-6, q3 - q1)
med.append(float(np.median(vals)))
iqr.append(inter)
self._median = np.asarray(med, dtype=float)
self._iqr = np.asarray(iqr, dtype=float)
def _transform(self, x: np.ndarray, m: np.ndarray, fit: bool = False) -> np.ndarray:
x = np.asarray(x, dtype=float)
m = np.asarray(m, dtype=float)
if fit or self._median is None or self._iqr is None:
self._fit_normalizer(x, m)
assert self._median is not None and self._iqr is not None
x_filled = np.where(np.isfinite(x), x, np.nan)
for j in range(x.shape[1]):
col = x_filled[:, j]
missing = ~np.isfinite(col)
col[missing] = self._median[j]
x_filled[:, j] = (col - self._median[j]) / self._iqr[j]
# Explicit missingness information: concatenate mask vector.
return np.concatenate([x_filled, m], axis=1)
def fit(
self,
features: np.ndarray,
masks: np.ndarray,
y: np.ndarray,
feature_names: List[str],
mask_names: List[str],
) -> Dict[str, float]:
y = np.asarray(y, dtype=float)
valid = np.isfinite(y)
n_samples = int(np.sum(valid))
self.feature_names = list(feature_names)
self.mask_names = list(mask_names)
if n_samples < self.config.min_train_samples:
self.model = None
self.backend = "warmup"
self.last_fit_stats = {
"n_train": float(n_samples),
"train_mae": np.nan,
"val_mae": np.nan,
"instability_ratio": 1.0,
}
return self.last_fit_stats
x = np.asarray(features, dtype=float)[valid]
m = np.asarray(masks, dtype=float)[valid]
yv = y[valid]
x_trans = self._transform(x, m, fit=True)
self._train_x = x_trans
self._train_y = yv
self.model = self._build_model(n_samples=n_samples)
self.model.fit(x_trans, yv)
train_pred = self.model.predict(x_trans)
train_mae = float(np.mean(np.abs(train_pred - yv)))
# Simple rolling validation proxy.
if n_samples >= 12:
split = int(max(8, n_samples * 0.8))
x_tr, x_val = x_trans[:split], x_trans[split:]
y_tr, y_val = yv[:split], yv[split:]
val_model = self._build_model(n_samples=split)
val_model.fit(x_tr, y_tr)
val_pred = val_model.predict(x_val)
val_mae = float(np.mean(np.abs(val_pred - y_val))) if y_val.size else train_mae
else:
val_mae = train_mae
instability = float((val_mae + 1e-6) / (train_mae + 1e-6))
self.last_fit_stats = {
"n_train": float(n_samples),
"train_mae": train_mae,
"val_mae": val_mae,
"instability_ratio": instability,
}
return self.last_fit_stats
def _rf_uncertainty(self, x: np.ndarray) -> np.ndarray:
assert self.model is not None
if not hasattr(self.model, "estimators_"):
return np.full(x.shape[0], float(np.std(self._train_y)) if self._train_y is not None else 1.0)
preds = np.vstack([tree.predict(x) for tree in self.model.estimators_])
return np.std(preds, axis=0)
def predict_bundle(self, features: np.ndarray, masks: np.ndarray, topk_threshold: float | None = None) -> Dict[str, np.ndarray]:
n = features.shape[0]
if self.model is None:
return {
"expected_score": np.zeros(n, dtype=float),
"topk_probability": np.full(n, 0.5, dtype=float),
"uncertainty": np.full(n, 1.0, dtype=float),
}
x = self._transform(np.asarray(features, dtype=float), np.asarray(masks, dtype=float), fit=False)
expected = self.model.predict(x)
if self.backend == "random_forest":
uncertainty = self._rf_uncertainty(x)
else:
residual_scale = (
float(np.std(self._train_y - self.model.predict(self._train_x)))
if self._train_x is not None and self._train_y is not None
else 1.0
)
uncertainty = np.full(expected.shape[0], max(1e-3, residual_scale))
if topk_threshold is None:
topk_threshold = float(np.quantile(self._train_y, 0.8)) if self._train_y is not None else 0.0
z = (expected - topk_threshold) / (uncertainty + 1e-6)
topk_prob = 1.0 / (1.0 + np.exp(-z))
return {
"expected_score": expected.astype(float),
"topk_probability": topk_prob.astype(float),
"uncertainty": uncertainty.astype(float),
}
def feature_importance(self) -> Dict[str, float]:
if self.model is None or not hasattr(self.model, "feature_importances_"):
return {}
names = self.feature_names + self.mask_names
importances = np.asarray(self.model.feature_importances_, dtype=float)
if importances.size != len(names):
return {}
return {name: float(value) for name, value in zip(names, importances)}