| from __future__ import annotations |
|
|
| import gzip |
| import os |
| import shutil |
| from dataclasses import dataclass, asdict |
| from datetime import UTC, datetime |
| from pathlib import Path |
| from typing import Dict, Iterable, List |
|
|
| import pandas as pd |
|
|
|
|
| @dataclass |
| class DiskSnapshot: |
| timestamp_utc: str |
| stage: str |
| note: str |
| free_gb: float |
| repo_size_gb: float |
| projected_output_gb: float |
| projected_free_after_gb: float |
|
|
|
|
| @dataclass |
| class DiskCleanupAction: |
| timestamp_utc: str |
| action: str |
| target: str |
| size_before_mb: float |
| size_after_mb: float |
| reclaimed_mb: float |
| status: str |
| reason: str |
|
|
|
|
| def _utc_now() -> str: |
| return datetime.now(UTC).isoformat() |
|
|
|
|
| def _is_within_repo(target: Path, repo_root: Path) -> bool: |
| try: |
| target.resolve().relative_to(repo_root.resolve()) |
| return True |
| except Exception: |
| return False |
|
|
|
|
| def directory_size_bytes(path: Path) -> int: |
| total = 0 |
| if not path.exists(): |
| return total |
| for entry in path.rglob("*"): |
| if entry.is_file(): |
| try: |
| total += entry.stat().st_size |
| except OSError: |
| continue |
| return total |
|
|
|
|
| def system_free_bytes(path: Path) -> int: |
| return int(shutil.disk_usage(path).free) |
|
|
|
|
| def snapshot_disk_state(repo_root: Path, stage: str, note: str, projected_output_gb: float = 0.0) -> DiskSnapshot: |
| free = system_free_bytes(repo_root) |
| repo_size = directory_size_bytes(repo_root) |
| projected_after = max(0.0, (free / (1024**3)) - float(projected_output_gb)) |
| return DiskSnapshot( |
| timestamp_utc=_utc_now(), |
| stage=stage, |
| note=note, |
| free_gb=free / (1024**3), |
| repo_size_gb=repo_size / (1024**3), |
| projected_output_gb=float(projected_output_gb), |
| projected_free_after_gb=projected_after, |
| ) |
|
|
|
|
| def append_disk_snapshot(csv_path: Path, snapshot: DiskSnapshot) -> None: |
| csv_path.parent.mkdir(parents=True, exist_ok=True) |
| row = pd.DataFrame([asdict(snapshot)]) |
| if csv_path.exists(): |
| old = pd.read_csv(csv_path) |
| out = pd.concat([old, row], ignore_index=True) |
| else: |
| out = row |
| out.to_csv(csv_path, index=False) |
|
|
|
|
| def requires_cleanup(snapshot: DiskSnapshot, *, min_free_gb: float = 8.0) -> bool: |
| return bool(snapshot.projected_free_after_gb < float(min_free_gb)) |
|
|
|
|
| def _compress_file(path: Path) -> tuple[float, float]: |
| before = path.stat().st_size / (1024**2) |
| gz_path = path.with_suffix(path.suffix + ".gz") |
| with path.open("rb") as src, gzip.open(gz_path, "wb", compresslevel=6) as dst: |
| shutil.copyfileobj(src, dst) |
| path.unlink(missing_ok=True) |
| after = gz_path.stat().st_size / (1024**2) |
| return before, after |
|
|
|
|
| def _prune_batches(raw_root: Path, keep_first_n: int) -> tuple[float, float]: |
| before = directory_size_bytes(raw_root) / (1024**2) |
| batches = sorted([p for p in raw_root.iterdir() if p.is_dir()]) |
| for batch in batches[keep_first_n:]: |
| shutil.rmtree(batch, ignore_errors=True) |
| after = directory_size_bytes(raw_root) / (1024**2) |
| return before, after |
|
|
|
|
| def run_repository_local_cleanup( |
| repo_root: Path, |
| *, |
| results_dir: Path, |
| keep_raw_batches: int = 6, |
| ) -> List[DiskCleanupAction]: |
| actions: List[DiskCleanupAction] = [] |
|
|
| def record(action: str, target: Path, before: float, after: float, status: str, reason: str) -> None: |
| actions.append( |
| DiskCleanupAction( |
| timestamp_utc=_utc_now(), |
| action=action, |
| target=str(target), |
| size_before_mb=float(before), |
| size_after_mb=float(after), |
| reclaimed_mb=max(0.0, float(before - after)), |
| status=status, |
| reason=reason, |
| ) |
| ) |
|
|
| |
| for replay in results_dir.glob("*/replay_cache"): |
| parent = replay.parent |
| if not _is_within_repo(replay, repo_root): |
| record("remove_dir", replay, 0.0, 0.0, "skipped", "outside_repo_guard") |
| continue |
| if not (parent / "summary.json").exists(): |
| record("remove_dir", replay, 0.0, 0.0, "skipped", "missing_summary") |
| continue |
| before = directory_size_bytes(replay) / (1024**2) |
| shutil.rmtree(replay, ignore_errors=True) |
| after = directory_size_bytes(replay) / (1024**2) if replay.exists() else 0.0 |
| record("remove_dir", replay, before, after, "ok", "replay_cache_not_required_for_final_reports") |
|
|
| |
| for raw_root in list(results_dir.glob("*/raw_rdock_outputs")) + list(results_dir.glob("*/predock/raw_rdock_outputs")): |
| if not raw_root.exists() or not raw_root.is_dir(): |
| continue |
| if not _is_within_repo(raw_root, repo_root): |
| record("prune_batches", raw_root, 0.0, 0.0, "skipped", "outside_repo_guard") |
| continue |
| before, after = _prune_batches(raw_root, keep_first_n=keep_raw_batches) |
| record("prune_batches", raw_root, before, after, "ok", "keep_representative_raw_batches_only") |
|
|
| |
| for log_file in results_dir.rglob("*.log"): |
| if not log_file.exists() or not log_file.is_file(): |
| continue |
| if not _is_within_repo(log_file, repo_root): |
| record("compress_log", log_file, 0.0, 0.0, "skipped", "outside_repo_guard") |
| continue |
| if log_file.stat().st_size < 2 * 1024 * 1024: |
| continue |
| before, after = _compress_file(log_file) |
| record("compress_log", log_file, before, after, "ok", "large_log_compression") |
|
|
| |
| for work_dir in results_dir.glob("*/work"): |
| parent = work_dir.parent |
| if not (parent / "summary.json").exists(): |
| continue |
| if not _is_within_repo(work_dir, repo_root): |
| record("remove_work_dir", work_dir, 0.0, 0.0, "skipped", "outside_repo_guard") |
| continue |
| before = directory_size_bytes(work_dir) / (1024**2) |
| shutil.rmtree(work_dir, ignore_errors=True) |
| record("remove_work_dir", work_dir, before, 0.0, "ok", "parsed_outputs_already_persisted") |
|
|
| return actions |
|
|
|
|
| def write_cleanup_actions(path: Path, actions: Iterable[DiskCleanupAction]) -> None: |
| lines = ["# Disk Cleanup Actions", ""] |
| actions = list(actions) |
| if not actions: |
| lines.append("- No cleanup actions executed.") |
| else: |
| for a in actions: |
| lines.append( |
| f"- [{a.timestamp_utc}] action={a.action} target=`{a.target}` status={a.status} " |
| f"reclaimed_mb={a.reclaimed_mb:.2f} reason={a.reason}" |
| ) |
| path.parent.mkdir(parents=True, exist_ok=True) |
| path.write_text("\n".join(lines), encoding="utf-8") |
|
|
|
|
| def write_disk_guard_report( |
| path: Path, |
| snapshots: Iterable[DiskSnapshot], |
| actions: Iterable[DiskCleanupAction], |
| *, |
| min_free_gb: float, |
| ) -> None: |
| snaps = list(snapshots) |
| acts = list(actions) |
| lines = [ |
| "# Disk Guard Report", |
| "", |
| f"- Min free threshold (GB): `{min_free_gb}`", |
| f"- Snapshots captured: `{len(snaps)}`", |
| f"- Cleanup actions: `{len(acts)}`", |
| "", |
| "## Snapshot Timeline", |
| ] |
| for s in snaps: |
| lines.append( |
| f"- [{s.timestamp_utc}] stage={s.stage} free_gb={s.free_gb:.2f} repo_size_gb={s.repo_size_gb:.2f} " |
| f"projected_output_gb={s.projected_output_gb:.2f} projected_free_after_gb={s.projected_free_after_gb:.2f} note={s.note}" |
| ) |
| lines.extend(["", "## Cleanup Summary"]) |
| reclaimed = sum(a.reclaimed_mb for a in acts if a.status == "ok") |
| lines.append(f"- Total reclaimed MB: `{reclaimed:.2f}`") |
| outside_repo_violations = [a for a in acts if a.reason == "outside_repo_guard" and a.status == "ok"] |
| lines.append(f"- Outside-repo destructive actions: `{len(outside_repo_violations)}`") |
| path.parent.mkdir(parents=True, exist_ok=True) |
| path.write_text("\n".join(lines), encoding="utf-8") |
|
|
|
|