scripts/slurm_strategy_benchmark_500k.sh

#!/usr/bin/env bash
#SBATCH --job-name=strategy_benchmark_500k
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=80
#SBATCH --mem=0
#SBATCH --time=48:00:00

set -euo pipefail

source ~/.bashrc
conda activate portable-rdock-pipeline

export DATASET_DIR=${DATASET_DIR:?set DATASET_DIR}
export STRATEGY_OUT=${STRATEGY_OUT:-$SCRATCH/plgproma/results/strategy_benchmark_500k}

python -m docking_pipeline benchmark-triage-strategies \
  --dataset-dir "$DATASET_DIR" \
  --reference-mode sampled \
  --reference-sample-size 5000 \
  --reference-sample-seed 42 \
  --strategies cluster_only_triage,cheap_descriptor_filter_only,random_cost_balanced,diverse_random_cost_balanced,single_fidelity_cost_balanced,reference_free_active_learning_v2 \
  --adaptive-policies cluster_bandit \
  --triage-target-recall 0.98 \
  --triage-retain-fraction 0.02 \
  --calibration-size 5000 \
  --fidelity-validation-size 1000 \
  --cost-budget-runs 200000 \
  --fidelity-levels 5,10,15,30,50 \
  --seeds 1,2,3 \
  --jobs 64 \
  --chunk-size 100 \
  --cpu-fraction 0.85 \
  --rdock-timeout-seconds 14400 \
  --out "$STRATEGY_OUT" \
  --resume | tee "${STRATEGY_OUT}.log"