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SetColorCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetColorCommand.java | /*
* SetColorCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 4,245 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DrawNoneCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DrawNoneCommand.java | /*
* DrawNoneCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 2,864 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DrawDiamondsCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DrawDiamondsCommand.java | /*
* DrawDiamondsCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 2,965 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DrawCirclesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DrawCirclesCommand.java | /*
* DrawCirclesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 2,972 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetFillColorCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetFillColorCommand.java | /*
* SetFillColorCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 4,187 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
UngroupNodesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/UngroupNodesCommand.java | /*
* UngroupNodesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 3,110 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GroupNodesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/GroupNodesCommand.java | /*
* GroupNodesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 5,700 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetFontCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetFontCommand.java | /*
* SetFontCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 4,261 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetNodeSizeCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetNodeSizeCommand.java | /*
* SetNodeSizeCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 3,967 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GroupSamplesByCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/GroupSamplesByCommand.java | /*
* GroupSamplesByCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 4,584 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetSampleColorCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetSampleColorCommand.java | /*
* SetSampleColorCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 3,465 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetEdgeShapeCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetEdgeShapeCommand.java | /*
* SetEdgeShapeCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 4,381 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
IncreaseFontCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/IncreaseFontCommand.java | /*
* IncreaseFontCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 6,728 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DrawTrianglesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DrawTrianglesCommand.java | /*
* DrawTrianglesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 2,972 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
LabelSamplesByCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/LabelSamplesByCommand.java | /*
* LabelSamplesByCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 4,752 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DecreaseFontCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DecreaseFontCommand.java | /*
* DecreaseFontCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 3,371 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ShapeSamplesByCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/ShapeSamplesByCommand.java | /*
* ShapeSamplesByCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 5,822 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetEdgeWidthCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetEdgeWidthCommand.java | /*
* SetEdgeWidthCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 3,938 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetLabelFillColorCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetLabelFillColorCommand.java | /*
* SetLabelFillColorCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 4,502 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DrawSquaresCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/DrawSquaresCommand.java | /*
* DrawSquaresCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 2,958 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetLabelColorCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetLabelColorCommand.java | /*
* SetLabelColorCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 4,452 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ColorSamplesByCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/ColorSamplesByCommand.java | /*
* ColorSamplesByCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 5,436 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SetNodeShapeCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/format/SetNodeShapeCommand.java | /*
* SetNodeShapeCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 4,644 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ListDisabledCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/mapping/ListDisabledCommand.java | /*
* ListDisabledCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 2,385 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
EnableAllTaxaCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/mapping/EnableAllTaxaCommand.java | /*
* EnableAllTaxaCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 1,741 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
EnableTaxaCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/mapping/EnableTaxaCommand.java | /*
* EnableTaxaCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 4,592 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DisableTaxaCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/mapping/DisableTaxaCommand.java | /*
* DisableTaxaCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 5,098 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DisableDefaultTaxaCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/commands/mapping/DisableDefaultTaxaCommand.java | /*
* DisableDefaultTaxaCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* th... | 1,858 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6Connector.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6Connector.java | /*
* RMA6Connector.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 9,032 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6FromBlastCreator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6FromBlastCreator.java | /*
* RMA6FromBlastCreator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 17,771 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatchBlockRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/MatchBlockRMA6.java | /*
* MatchBlockRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 6,841 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6File.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6File.java | /*
* RMA6File.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 4,501 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
FooterSectionRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/FooterSectionRMA6.java | /*
* FooterSectionRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 7,118 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6FileModifier.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6FileModifier.java | /*
* RMA6FileModifier.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 4,421 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Utilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/Utilities.java | /*
* Utilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 12,835 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6FileCreator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6FileCreator.java | /*
* RMA6FileCreator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 6,175 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockGetterRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/ReadBlockGetterRMA6.java | /*
* ReadBlockGetterRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 4,299 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastFileReadBlockIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/BlastFileReadBlockIterator.java | /*
* BlastFileReadBlockIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* t... | 7,204 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
AllReadsIteratorRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/AllReadsIteratorRMA6.java | /*
* AllReadsIteratorRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 2,466 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/ReadBlockRMA6.java | /*
* ReadBlockRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 12,104 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatchLineRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/MatchLineRMA6.java | /*
* MatchLineRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 3,455 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ClassificationBlockRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/ClassificationBlockRMA6.java | /*
* ClassificationBlockRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 5,785 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RMA6ToSAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/RMA6ToSAMIterator.java | /*
* RMA6ToSAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 4,436 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ExtractToNewDocumentRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/ExtractToNewDocumentRMA6.java | /*
* ExtractToNewDocumentRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 6,394 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
HeaderSectionRMA6.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/rma6/HeaderSectionRMA6.java | /*
* HeaderSectionRMA6.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 3,663 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAReferencesAnnotator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/DAAReferencesAnnotator.java | /*
* DAAReferencesAnnotator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the F... | 11,934 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Meganize.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/Meganize.java | /*
* Meganize.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 5,418 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
OutputWriterLittleEndian.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/OutputWriterLittleEndian.java | /*
* OutputWriterLittleEndian.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 5,747 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ByteInputStream.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/ByteInputStream.java | /*
* ByteInputStream.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 2,032 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
AlignMode.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/AlignMode.java | /*
* AlignMode.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 1,553 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PackedOperation.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/PackedOperation.java | /*
* PackedOperation.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 2,254 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAParser.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAParser.java | /*
* DAAParser.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 15,736 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PackedTranscript.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/PackedTranscript.java | /*
* PackedTranscript.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 3,192 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Utilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/Utilities.java | /*
* Utilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 1,955 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAModifier.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAModifier.java | /*
* DAAModifier.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 5,531 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAHeader.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAHeader.java | /*
* DAAHeader.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 19,497 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAMatchRecord.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAMatchRecord.java | /*
* DAAMatchRecord.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 8,006 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Translator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/Translator.java | /*
* Translator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software... | 6,681 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ModifyClassificationsDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/ModifyClassificationsDAA.java | /*
* ModifyClassificationsDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 3,202 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ByteOutputStream.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/ByteOutputStream.java | /*
* ByteOutputStream.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 2,958 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAQueryRecord.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAQueryRecord.java | /*
* DAAQueryRecord.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 3,900 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
InputReaderLittleEndian.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/InputReaderLittleEndian.java | /*
* InputReaderLittleEndian.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 6,455 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PackedSequence.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/PackedSequence.java | /*
* PackedSequence.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 2,623 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAA2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAA2SAMIterator.java | /*
* DAA2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 3,033 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
AccessClassificationsDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/AccessClassificationsDAA.java | /*
* AccessClassificationsDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 5,063 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CombinedOperation.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/CombinedOperation.java | /*
* CombinedOperation.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 1,963 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlockType.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/BlockType.java | /*
* BlockType.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 1,432 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAA2QuerySAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAA2QuerySAMIterator.java | /*
* DAA2QuerySAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 3,419 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAQueryMatchesIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/DAAQueryMatchesIterator.java | /*
* DAAQueryMatchesIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 3,571 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAMUtilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/io/SAMUtilities.java | /*
* SAMUtilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 13,733 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockGetterDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/connector/ReadBlockGetterDAA.java | /*
* ReadBlockGetterDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 5,554 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/connector/ReadBlockDAA.java | /*
* ReadBlockDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 6,360 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatchBlockDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/connector/MatchBlockDAA.java | /*
* MatchBlockDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 12,159 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAConnector.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/connector/DAAConnector.java | /*
* DAAConnector.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 10,759 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ClassificationBlockDAA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/daa/connector/ClassificationBlockDAA.java | /*
* ClassificationBlockDAA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the F... | 2,208 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DESeq.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/stats/DESeq.java | /*
* DESeq.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... | 3,981 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SilvaLogFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/SilvaLogFileFilter.java | /*
* SilvaLogFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 2,069 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
WindowUtilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/WindowUtilities.java | /*
* WindowUtilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 2,056 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DAAFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/DAAFileFilter.java | /*
* DAAFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 2,048 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ExportStamp.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/ExportStamp.java | /*
* ExportStamp.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 10,366 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ScalingType.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/ScalingType.java | /*
* ScalingType.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 890 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MeganFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/MeganFileFilter.java | /*
* MeganFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 1,280 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
LastMAFFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/LastMAFFileFilter.java | /*
* LastMAFFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,201 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
XIntArray.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/XIntArray.java | /*
* XIntArray.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 6,539 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastParsingUtils.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlastParsingUtils.java | /*
* BlastParsingUtils.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 7,174 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastPTextFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlastPTextFileFilter.java | /*
* BlastPTextFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 2,222 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
JPanelWithFXStageAndRoot.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/JPanelWithFXStageAndRoot.java | /*
* JPanelWithFXStageAndRoot.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 1,410 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DiversityIndex.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/DiversityIndex.java | /*
* DiversityIndex.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 5,435 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastTabFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlastTabFileFilter.java | /*
* BlastTabFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 2,310 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MothurFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/MothurFileFilter.java | /*
* MothurFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 2,030 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GraphicsUtilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/GraphicsUtilities.java | /*
* GraphicsUtilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,285 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastNTextFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlastNTextFileFilter.java | /*
* BlastNTextFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 2,222 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ExchangeabilityStatistics.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/ExchangeabilityStatistics.java | /*
* ExchangeabilityStatistics.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* th... | 1,612 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MeganizedDAAFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/MeganizedDAAFileFilter.java | /*
* MeganizedDAAFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the F... | 2,101 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ColorUtilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/ColorUtilities.java | /*
* ColorUtilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 3,141 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
TableCellListener.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/TableCellListener.java | /*
* TableCellListener.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 5,430 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlosumMatrix.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlosumMatrix.java | /*
* BlosumMatrix.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 19,334 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAMFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/SAMFileFilter.java | /*
* SAMFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 2,037 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastXTextFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BlastXTextFileFilter.java | /*
* BlastXTextFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 2,222 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BiomFileFilter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/util/BiomFileFilter.java | /*
* BiomFileFilter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 2,643 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
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