milkzheng commited on
Commit
29e75bf
·
verified ·
1 Parent(s): f198b58

Add files using upload-large-folder tool

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zattrs +116 -0
  2. test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zgroup +3 -0
  3. test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/.zarray +25 -0
  4. test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/0/0/0 +0 -0
  5. test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zattrs +45 -0
  6. test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zgroup +3 -0
  7. test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zattrs +45 -0
  8. test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zgroup +3 -0
  9. train/GTEX-111FC-2126.zarr/.zattrs +55 -0
  10. train/GTEX-111FC-2126.zarr/.zgroup +3 -0
  11. train/GTEX-111FC-2126.zarr/zmetadata +626 -0
  12. train/GTEX-11WQK-2626.zarr/.zattrs +55 -0
  13. train/GTEX-11WQK-2626.zarr/.zgroup +3 -0
  14. train/GTEX-11WQK-2626.zarr/zmetadata +626 -0
  15. train/GTEX-12ZZW-2226.zarr/.zattrs +55 -0
  16. train/GTEX-12ZZW-2226.zarr/.zgroup +3 -0
  17. train/GTEX-12ZZW-2226.zarr/zmetadata +626 -0
  18. train/GTEX-13111-1226.zarr/.zattrs +55 -0
  19. train/GTEX-13111-1226.zarr/.zgroup +3 -0
  20. train/GTEX-13111-1226.zarr/zmetadata +626 -0
  21. train/GTEX-139YR-1926.zarr/.zattrs +60 -0
  22. train/GTEX-139YR-1926.zarr/.zgroup +3 -0
  23. train/GTEX-139YR-1926.zarr/zmetadata +631 -0
  24. train/GTEX-13CZV-2426.zarr/.zattrs +55 -0
  25. train/GTEX-13CZV-2426.zarr/.zgroup +3 -0
  26. train/GTEX-13CZV-2426.zarr/zmetadata +626 -0
  27. train/GTEX-13N1W-2026.zarr/.zattrs +55 -0
  28. train/GTEX-13N1W-2026.zarr/.zgroup +3 -0
  29. train/GTEX-13N1W-2026.zarr/zmetadata +626 -0
  30. train/GTEX-13NYB-1426.zarr/.zattrs +55 -0
  31. train/GTEX-13NYB-1426.zarr/.zgroup +3 -0
  32. train/GTEX-13NYB-1426.zarr/images/.zgroup +3 -0
  33. train/GTEX-13NYB-1426.zarr/shapes/.zgroup +3 -0
  34. train/GTEX-13NYB-1426.zarr/tables/.zgroup +3 -0
  35. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zattrs +9 -0
  36. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zgroup +3 -0
  37. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zarray +23 -0
  38. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zattrs +4 -0
  39. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zattrs +4 -0
  40. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zgroup +3 -0
  41. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zattrs +9 -0
  42. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zgroup +3 -0
  43. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zarray +25 -0
  44. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zattrs +4 -0
  45. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zattrs +5 -0
  46. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zgroup +3 -0
  47. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zarray +25 -0
  48. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zattrs +4 -0
  49. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zarray +21 -0
  50. train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zattrs +4 -0
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zattrs ADDED
@@ -0,0 +1,116 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "multiscales": [
3
+ {
4
+ "axes": [
5
+ {
6
+ "name": "c",
7
+ "type": "channel"
8
+ },
9
+ {
10
+ "name": "y",
11
+ "type": "space"
12
+ },
13
+ {
14
+ "name": "x",
15
+ "type": "space"
16
+ }
17
+ ],
18
+ "coordinateTransformations": [
19
+ {
20
+ "input": {
21
+ "axes": [
22
+ {
23
+ "name": "c",
24
+ "type": "channel"
25
+ },
26
+ {
27
+ "name": "y",
28
+ "type": "space",
29
+ "unit": "unit"
30
+ },
31
+ {
32
+ "name": "x",
33
+ "type": "space",
34
+ "unit": "unit"
35
+ }
36
+ ],
37
+ "name": "cyx"
38
+ },
39
+ "output": {
40
+ "axes": [
41
+ {
42
+ "name": "c",
43
+ "type": "channel"
44
+ },
45
+ {
46
+ "name": "y",
47
+ "type": "space",
48
+ "unit": "unit"
49
+ },
50
+ {
51
+ "name": "x",
52
+ "type": "space",
53
+ "unit": "unit"
54
+ }
55
+ ],
56
+ "name": "global"
57
+ },
58
+ "scale": [
59
+ 1.0,
60
+ 31.69298762522098,
61
+ 31.67800138792505
62
+ ],
63
+ "type": "scale"
64
+ }
65
+ ],
66
+ "datasets": [
67
+ {
68
+ "coordinateTransformations": [
69
+ {
70
+ "scale": [
71
+ 1.0,
72
+ 1.0,
73
+ 1.0
74
+ ],
75
+ "type": "scale"
76
+ }
77
+ ],
78
+ "path": "0"
79
+ }
80
+ ],
81
+ "metadata": {
82
+ "omero": {
83
+ "channels": [
84
+ {
85
+ "label": 0
86
+ },
87
+ {
88
+ "label": 1
89
+ },
90
+ {
91
+ "label": 2
92
+ }
93
+ ]
94
+ }
95
+ },
96
+ "name": "/images/wsi_thumbnail",
97
+ "version": "0.4-dev-spatialdata"
98
+ }
99
+ ],
100
+ "omero": {
101
+ "channels": [
102
+ {
103
+ "label": 0
104
+ },
105
+ {
106
+ "label": 1
107
+ },
108
+ {
109
+ "label": 2
110
+ }
111
+ ]
112
+ },
113
+ "spatialdata_attrs": {
114
+ "version": "0.2"
115
+ }
116
+ }
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/.zarray ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "chunks": [
3
+ 3,
4
+ 1441,
5
+ 1697
6
+ ],
7
+ "compressor": {
8
+ "blocksize": 0,
9
+ "clevel": 5,
10
+ "cname": "lz4",
11
+ "id": "blosc",
12
+ "shuffle": 1
13
+ },
14
+ "dimension_separator": "/",
15
+ "dtype": "|u1",
16
+ "fill_value": 0,
17
+ "filters": null,
18
+ "order": "C",
19
+ "shape": [
20
+ 3,
21
+ 1441,
22
+ 1697
23
+ ],
24
+ "zarr_format": 2
25
+ }
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/0/0/0 ADDED
Binary file (29.8 kB). View file
 
test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zattrs ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "axes": [
3
+ "x",
4
+ "y"
5
+ ],
6
+ "coordinateTransformations": [
7
+ {
8
+ "input": {
9
+ "axes": [
10
+ {
11
+ "name": "x",
12
+ "type": "space",
13
+ "unit": "unit"
14
+ },
15
+ {
16
+ "name": "y",
17
+ "type": "space",
18
+ "unit": "unit"
19
+ }
20
+ ],
21
+ "name": "xy"
22
+ },
23
+ "output": {
24
+ "axes": [
25
+ {
26
+ "name": "x",
27
+ "type": "space",
28
+ "unit": "unit"
29
+ },
30
+ {
31
+ "name": "y",
32
+ "type": "space",
33
+ "unit": "unit"
34
+ }
35
+ ],
36
+ "name": "global"
37
+ },
38
+ "type": "identity"
39
+ }
40
+ ],
41
+ "encoding-type": "ngff:shapes",
42
+ "spatialdata_attrs": {
43
+ "version": "0.2"
44
+ }
45
+ }
test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zattrs ADDED
@@ -0,0 +1,45 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "axes": [
3
+ "x",
4
+ "y"
5
+ ],
6
+ "coordinateTransformations": [
7
+ {
8
+ "input": {
9
+ "axes": [
10
+ {
11
+ "name": "x",
12
+ "type": "space",
13
+ "unit": "unit"
14
+ },
15
+ {
16
+ "name": "y",
17
+ "type": "space",
18
+ "unit": "unit"
19
+ }
20
+ ],
21
+ "name": "xy"
22
+ },
23
+ "output": {
24
+ "axes": [
25
+ {
26
+ "name": "x",
27
+ "type": "space",
28
+ "unit": "unit"
29
+ },
30
+ {
31
+ "name": "y",
32
+ "type": "space",
33
+ "unit": "unit"
34
+ }
35
+ ],
36
+ "name": "global"
37
+ },
38
+ "type": "identity"
39
+ }
40
+ ],
41
+ "encoding-type": "ngff:shapes",
42
+ "spatialdata_attrs": {
43
+ "version": "0.2"
44
+ }
45
+ }
test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-111FC-2126.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 49799,
7
+ 37728
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000120491605752,
12
+ 16.00112467866324
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 37728,
17
+ 49799
18
+ ],
19
+ [
20
+ 9432,
21
+ 12449
22
+ ],
23
+ [
24
+ 2358,
25
+ 3112
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"05/09/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"2070653\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"46757\", \"aperio.Left\": \"10.676636\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"37828\", \"aperio.OriginalWidth\": \"50800\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:54:45\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.659782\", \"aperio.User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1013\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"37728\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"49799\", \"openslide.level[1].downsample\": \"4.0001204916057516\", \"openslide.level[1].height\": \"9432\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12449\", \"openslide.level[2].downsample\": \"16.001124678663238\", \"openslide.level[2].height\": \"2358\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3112\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"05/09/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"2070653\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"46757\", \"Left\": \"10.676636\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"37828\", \"OriginalWidth\": \"50800\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:54:45\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.659782\", \"User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1013\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"37728\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"49799\", \"level[1].downsample\": \"4.0001204916057516\", \"level[1].height\": \"9432\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12449\", \"level[2].downsample\": \"16.001124678663238\", \"level[2].height\": \"2358\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3112\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 37728,
34
+ 49799
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-111FC-2126.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-111FC-2126.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 49799,
9
+ 37728
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000120491605752,
14
+ 16.00112467866324
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 37728,
19
+ 49799
20
+ ],
21
+ [
22
+ 9432,
23
+ 12449
24
+ ],
25
+ [
26
+ 2358,
27
+ 3112
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"05/09/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"2070653\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"46757\", \"aperio.Left\": \"10.676636\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"37828\", \"aperio.OriginalWidth\": \"50800\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:54:45\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.659782\", \"aperio.User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1013\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"37728\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"49799\", \"openslide.level[1].downsample\": \"4.0001204916057516\", \"openslide.level[1].height\": \"9432\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12449\", \"openslide.level[2].downsample\": \"16.001124678663238\", \"openslide.level[2].height\": \"2358\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3112\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"05/09/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"2070653\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"46757\", \"Left\": \"10.676636\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"37828\", \"OriginalWidth\": \"50800\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:54:45\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.659782\", \"User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1013\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"37728\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"49799\", \"level[1].downsample\": \"4.0001204916057516\", \"level[1].height\": \"9432\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12449\", \"level[2].downsample\": \"16.001124678663238\", \"level[2].height\": \"2358\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3112\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 37728,
36
+ 49799
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 32.87062706270627,
124
+ 32.86411149825784
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 1148,
187
+ 1515
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 1148,
204
+ 1515
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 949,
325
+ 320
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 15176,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 15176
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 15176
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 15176
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 15176
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 15176
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 15176
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-11WQK-2626.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 55775,
7
+ 39768
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000107580864951,
12
+ 16.00376173829202
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 39768,
17
+ 55775
18
+ ],
19
+ [
20
+ 9942,
21
+ 13943
22
+ ],
23
+ [
24
+ 2485,
25
+ 3485
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"07/05/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"48518\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"48518\", \"aperio.Left\": \"14.132294\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39868\", \"aperio.OriginalWidth\": \"56896\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:12:20\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.416668\", \"aperio.User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"730\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39768\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"55775\", \"openslide.level[1].downsample\": \"4.0001075808649507\", \"openslide.level[1].height\": \"9942\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"13943\", \"openslide.level[2].downsample\": \"16.00376173829202\", \"openslide.level[2].height\": \"2485\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3485\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"07/05/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"48518\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"48518\", \"Left\": \"14.132294\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39868\", \"OriginalWidth\": \"56896\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:12:20\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.416668\", \"User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"730\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39768\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"55775\", \"level[1].downsample\": \"4.0001075808649507\", \"level[1].height\": \"9942\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"13943\", \"level[2].downsample\": \"16.00376173829202\", \"level[2].height\": \"2485\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3485\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 39768,
34
+ 55775
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-11WQK-2626.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-11WQK-2626.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 55775,
9
+ 39768
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000107580864951,
14
+ 16.00376173829202
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 39768,
19
+ 55775
20
+ ],
21
+ [
22
+ 9942,
23
+ 13943
24
+ ],
25
+ [
26
+ 2485,
27
+ 3485
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"07/05/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"48518\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"48518\", \"aperio.Left\": \"14.132294\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39868\", \"aperio.OriginalWidth\": \"56896\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:12:20\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.416668\", \"aperio.User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"730\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39768\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"55775\", \"openslide.level[1].downsample\": \"4.0001075808649507\", \"openslide.level[1].height\": \"9942\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"13943\", \"openslide.level[2].downsample\": \"16.00376173829202\", \"openslide.level[2].height\": \"2485\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3485\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"07/05/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"48518\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"48518\", \"Left\": \"14.132294\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39868\", \"OriginalWidth\": \"56896\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:12:20\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.416668\", \"User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"730\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39768\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"55775\", \"level[1].downsample\": \"4.0001075808649507\", \"level[1].height\": \"9942\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"13943\", \"level[2].downsample\": \"16.00376173829202\", \"level[2].height\": \"2485\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3485\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 39768,
36
+ 55775
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 39.11290322580645,
124
+ 39.10324483775811
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 1017,
187
+ 1426
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 1017,
204
+ 1426
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 1009,
325
+ 320
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 16131,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 16131
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 16131
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 16131
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 16131
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 16131
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 16131
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-12ZZW-2226.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 63743,
7
+ 41865
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000141906156478,
12
+ 16.003603186247975
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 41865,
17
+ 63743
18
+ ],
19
+ [
20
+ 10466,
21
+ 15935
22
+ ],
23
+ [
24
+ 2616,
25
+ 3983
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/19/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002128\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51278\", \"aperio.Left\": \"13.115914\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41965\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:13:52\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.206078\", \"aperio.User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"672\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41865\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.000141906156478\", \"openslide.level[1].height\": \"10466\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003603186247975\", \"openslide.level[2].height\": \"2616\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/19/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002128\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51278\", \"Left\": \"13.115914\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41965\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:13:52\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.206078\", \"User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"672\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41865\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.000141906156478\", \"level[1].height\": \"10466\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003603186247975\", \"level[2].height\": \"2616\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 41865,
34
+ 63743
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-12ZZW-2226.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-12ZZW-2226.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 63743,
9
+ 41865
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000141906156478,
14
+ 16.003603186247975
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 41865,
19
+ 63743
20
+ ],
21
+ [
22
+ 10466,
23
+ 15935
24
+ ],
25
+ [
26
+ 2616,
27
+ 3983
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/19/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002128\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51278\", \"aperio.Left\": \"13.115914\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41965\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:13:52\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.206078\", \"aperio.User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"672\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41865\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.000141906156478\", \"openslide.level[1].height\": \"10466\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003603186247975\", \"openslide.level[2].height\": \"2616\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/19/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002128\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51278\", \"Left\": \"13.115914\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41965\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:13:52\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.206078\", \"User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"672\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41865\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.000141906156478\", \"level[1].height\": \"10466\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003603186247975\", \"level[2].height\": \"2616\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 41865,
36
+ 63743
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 48.54760091393755,
124
+ 48.567285382830626
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 862,
187
+ 1313
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 862,
204
+ 1313
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 1623,
325
+ 320
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 25968,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 25968
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 25968
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 25968
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 25968
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 25968
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 25968
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-13111-1226.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 63743,
7
+ 41702
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000190055674318,
12
+ 16.003034192324286
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 41702,
17
+ 63743
18
+ ],
19
+ [
20
+ 10425,
21
+ 15935
22
+ ],
23
+ [
24
+ 2606,
25
+ 3983
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/22/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002235\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51419\", \"aperio.Left\": \"16.327196\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41802\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"14:04:43\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.452015\", \"aperio.User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"669\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41702\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001900556743184\", \"openslide.level[1].height\": \"10425\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003034192324286\", \"openslide.level[2].height\": \"2606\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/22/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002235\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51419\", \"Left\": \"16.327196\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41802\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"14:04:43\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.452015\", \"User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"669\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41702\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001900556743184\", \"level[1].height\": \"10425\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003034192324286\", \"level[2].height\": \"2606\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 41702,
34
+ 63743
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-13111-1226.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13111-1226.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 63743,
9
+ 41702
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000190055674318,
14
+ 16.003034192324286
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 41702,
19
+ 63743
20
+ ],
21
+ [
22
+ 10425,
23
+ 15935
24
+ ],
25
+ [
26
+ 2606,
27
+ 3983
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/22/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002235\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51419\", \"aperio.Left\": \"16.327196\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41802\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"14:04:43\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.452015\", \"aperio.User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"669\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41702\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001900556743184\", \"openslide.level[1].height\": \"10425\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003034192324286\", \"openslide.level[2].height\": \"2606\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/22/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002235\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51419\", \"Left\": \"16.327196\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41802\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"14:04:43\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.452015\", \"User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"669\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41702\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001900556743184\", \"level[1].height\": \"10425\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003034192324286\", \"level[2].height\": \"2606\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 41702,
36
+ 63743
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 48.73318042813456,
124
+ 48.717289719626166
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 856,
187
+ 1308
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 856,
204
+ 1308
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 2151,
325
+ 160
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 34408,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 17204
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 34408
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 34408
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 34408
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 17204
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 34408
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-139YR-1926.zarr/.zattrs ADDED
@@ -0,0 +1,60 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 65735,
7
+ 36802
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000199975394157,
12
+ 16.001286778713855,
13
+ 32.00257355742771
14
+ ],
15
+ "level_shape": [
16
+ [
17
+ 36802,
18
+ 65735
19
+ ],
20
+ [
21
+ 9200,
22
+ 16433
23
+ ],
24
+ [
25
+ 2300,
26
+ 4108
27
+ ],
28
+ [
29
+ 1150,
30
+ 2054
31
+ ]
32
+ ],
33
+ "magnification": 20.0,
34
+ "mpp": 0.4942,
35
+ "n_level": 4,
36
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/20/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003462\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"52645\", \"aperio.Left\": \"11.571976\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"36902\", \"aperio.OriginalWidth\": \"67056\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:50:58\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.725037\", \"aperio.User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"573\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"4\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"36802\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"65735\", \"openslide.level[1].downsample\": \"4.0001999753941568\", \"openslide.level[1].height\": \"9200\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"16433\", \"openslide.level[2].downsample\": \"16.001286778713855\", \"openslide.level[2].height\": \"2300\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"4108\", \"openslide.level[3].downsample\": \"32.002573557427709\", \"openslide.level[3].height\": \"1150\", \"openslide.level[3].tile-height\": \"240\", \"openslide.level[3].tile-width\": \"240\", \"openslide.level[3].width\": \"2054\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/20/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003462\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"52645\", \"Left\": \"11.571976\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"36902\", \"OriginalWidth\": \"67056\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:50:58\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.725037\", \"User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"573\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"4\", \"level[0].downsample\": \"1\", \"level[0].height\": \"36802\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"65735\", \"level[1].downsample\": \"4.0001999753941568\", \"level[1].height\": \"9200\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"16433\", \"level[2].downsample\": \"16.001286778713855\", \"level[2].height\": \"2300\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"4108\", \"level[3].downsample\": \"32.002573557427709\", \"level[3].height\": \"1150\", \"level[3].tile-height\": \"240\", \"level[3].tile-width\": \"240\", \"level[3].width\": \"2054\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
37
+ "shape": [
38
+ 36802,
39
+ 65735
40
+ ]
41
+ },
42
+ "spatialdata_attrs": {
43
+ "spatialdata_software_version": "0.5.0",
44
+ "version": "0.1"
45
+ },
46
+ "tile_spec": {
47
+ "tiles": {
48
+ "base_downsample": 1.0,
49
+ "base_level": 0,
50
+ "height": 128,
51
+ "mpp": 0.4942,
52
+ "ops_downsample": 1.0,
53
+ "ops_level": 0,
54
+ "stride_height": 128,
55
+ "stride_width": 128,
56
+ "tissue_name": "tissues",
57
+ "width": 128
58
+ }
59
+ }
60
+ }
train/GTEX-139YR-1926.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-139YR-1926.zarr/zmetadata ADDED
@@ -0,0 +1,631 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 65735,
9
+ 36802
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000199975394157,
14
+ 16.001286778713855,
15
+ 32.00257355742771
16
+ ],
17
+ "level_shape": [
18
+ [
19
+ 36802,
20
+ 65735
21
+ ],
22
+ [
23
+ 9200,
24
+ 16433
25
+ ],
26
+ [
27
+ 2300,
28
+ 4108
29
+ ],
30
+ [
31
+ 1150,
32
+ 2054
33
+ ]
34
+ ],
35
+ "magnification": 20.0,
36
+ "mpp": 0.4942,
37
+ "n_level": 4,
38
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/20/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003462\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"52645\", \"aperio.Left\": \"11.571976\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"36902\", \"aperio.OriginalWidth\": \"67056\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:50:58\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.725037\", \"aperio.User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"573\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"4\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"36802\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"65735\", \"openslide.level[1].downsample\": \"4.0001999753941568\", \"openslide.level[1].height\": \"9200\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"16433\", \"openslide.level[2].downsample\": \"16.001286778713855\", \"openslide.level[2].height\": \"2300\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"4108\", \"openslide.level[3].downsample\": \"32.002573557427709\", \"openslide.level[3].height\": \"1150\", \"openslide.level[3].tile-height\": \"240\", \"openslide.level[3].tile-width\": \"240\", \"openslide.level[3].width\": \"2054\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/20/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003462\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"52645\", \"Left\": \"11.571976\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"36902\", \"OriginalWidth\": \"67056\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:50:58\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.725037\", \"User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"573\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"4\", \"level[0].downsample\": \"1\", \"level[0].height\": \"36802\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"65735\", \"level[1].downsample\": \"4.0001999753941568\", \"level[1].height\": \"9200\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"16433\", \"level[2].downsample\": \"16.001286778713855\", \"level[2].height\": \"2300\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"4108\", \"level[3].downsample\": \"32.002573557427709\", \"level[3].height\": \"1150\", \"level[3].tile-height\": \"240\", \"level[3].tile-width\": \"240\", \"level[3].width\": \"2054\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
39
+ "shape": [
40
+ 36802,
41
+ 65735
42
+ ]
43
+ },
44
+ "spatialdata_attrs": {
45
+ "spatialdata_software_version": "0.5.0",
46
+ "version": "0.1"
47
+ },
48
+ "tile_spec": {
49
+ "tiles": {
50
+ "base_downsample": 1.0,
51
+ "base_level": 0,
52
+ "height": 128,
53
+ "mpp": 0.4942,
54
+ "ops_downsample": 1.0,
55
+ "ops_level": 0,
56
+ "stride_height": 128,
57
+ "stride_width": 128,
58
+ "tissue_name": "tissues",
59
+ "width": 128
60
+ }
61
+ }
62
+ },
63
+ ".zgroup": {
64
+ "zarr_format": 2
65
+ },
66
+ "images/.zgroup": {
67
+ "zarr_format": 2
68
+ },
69
+ "images/wsi_thumbnail/.zattrs": {
70
+ "multiscales": [
71
+ {
72
+ "axes": [
73
+ {
74
+ "name": "c",
75
+ "type": "channel"
76
+ },
77
+ {
78
+ "name": "y",
79
+ "type": "space"
80
+ },
81
+ {
82
+ "name": "x",
83
+ "type": "space"
84
+ }
85
+ ],
86
+ "coordinateTransformations": [
87
+ {
88
+ "input": {
89
+ "axes": [
90
+ {
91
+ "name": "c",
92
+ "type": "channel"
93
+ },
94
+ {
95
+ "name": "y",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ },
99
+ {
100
+ "name": "x",
101
+ "type": "space",
102
+ "unit": "unit"
103
+ }
104
+ ],
105
+ "name": "cyx"
106
+ },
107
+ "output": {
108
+ "axes": [
109
+ {
110
+ "name": "c",
111
+ "type": "channel"
112
+ },
113
+ {
114
+ "name": "y",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ },
118
+ {
119
+ "name": "x",
120
+ "type": "space",
121
+ "unit": "unit"
122
+ }
123
+ ],
124
+ "name": "global"
125
+ },
126
+ "scale": [
127
+ 1.0,
128
+ 58.744414655942805,
129
+ 58.69537480063796
130
+ ],
131
+ "type": "scale"
132
+ }
133
+ ],
134
+ "datasets": [
135
+ {
136
+ "coordinateTransformations": [
137
+ {
138
+ "scale": [
139
+ 1.0,
140
+ 1.0,
141
+ 1.0
142
+ ],
143
+ "type": "scale"
144
+ }
145
+ ],
146
+ "path": "0"
147
+ }
148
+ ],
149
+ "metadata": {
150
+ "omero": {
151
+ "channels": [
152
+ {
153
+ "label": 0
154
+ },
155
+ {
156
+ "label": 1
157
+ },
158
+ {
159
+ "label": 2
160
+ }
161
+ ]
162
+ }
163
+ },
164
+ "name": "/images/wsi_thumbnail",
165
+ "version": "0.4-dev-spatialdata"
166
+ }
167
+ ],
168
+ "omero": {
169
+ "channels": [
170
+ {
171
+ "label": 0
172
+ },
173
+ {
174
+ "label": 1
175
+ },
176
+ {
177
+ "label": 2
178
+ }
179
+ ]
180
+ },
181
+ "spatialdata_attrs": {
182
+ "version": "0.2"
183
+ }
184
+ },
185
+ "images/wsi_thumbnail/.zgroup": {
186
+ "zarr_format": 2
187
+ },
188
+ "images/wsi_thumbnail/0/.zarray": {
189
+ "chunks": [
190
+ 3,
191
+ 627,
192
+ 1119
193
+ ],
194
+ "compressor": {
195
+ "blocksize": 0,
196
+ "clevel": 5,
197
+ "cname": "lz4",
198
+ "id": "blosc",
199
+ "shuffle": 1
200
+ },
201
+ "dimension_separator": "/",
202
+ "dtype": "|u1",
203
+ "fill_value": 0,
204
+ "filters": null,
205
+ "order": "C",
206
+ "shape": [
207
+ 3,
208
+ 627,
209
+ 1119
210
+ ],
211
+ "zarr_format": 2
212
+ },
213
+ "shapes/.zgroup": {
214
+ "zarr_format": 2
215
+ },
216
+ "shapes/tiles/.zattrs": {
217
+ "axes": [
218
+ "x",
219
+ "y"
220
+ ],
221
+ "coordinateTransformations": [
222
+ {
223
+ "input": {
224
+ "axes": [
225
+ {
226
+ "name": "x",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ },
230
+ {
231
+ "name": "y",
232
+ "type": "space",
233
+ "unit": "unit"
234
+ }
235
+ ],
236
+ "name": "xy"
237
+ },
238
+ "output": {
239
+ "axes": [
240
+ {
241
+ "name": "x",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ },
245
+ {
246
+ "name": "y",
247
+ "type": "space",
248
+ "unit": "unit"
249
+ }
250
+ ],
251
+ "name": "global"
252
+ },
253
+ "type": "identity"
254
+ }
255
+ ],
256
+ "encoding-type": "ngff:shapes",
257
+ "spatialdata_attrs": {
258
+ "version": "0.2"
259
+ }
260
+ },
261
+ "shapes/tiles/.zgroup": {
262
+ "zarr_format": 2
263
+ },
264
+ "shapes/tissues/.zattrs": {
265
+ "axes": [
266
+ "x",
267
+ "y"
268
+ ],
269
+ "coordinateTransformations": [
270
+ {
271
+ "input": {
272
+ "axes": [
273
+ {
274
+ "name": "x",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ },
278
+ {
279
+ "name": "y",
280
+ "type": "space",
281
+ "unit": "unit"
282
+ }
283
+ ],
284
+ "name": "xy"
285
+ },
286
+ "output": {
287
+ "axes": [
288
+ {
289
+ "name": "x",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ },
293
+ {
294
+ "name": "y",
295
+ "type": "space",
296
+ "unit": "unit"
297
+ }
298
+ ],
299
+ "name": "global"
300
+ },
301
+ "type": "identity"
302
+ }
303
+ ],
304
+ "encoding-type": "ngff:shapes",
305
+ "spatialdata_attrs": {
306
+ "version": "0.2"
307
+ }
308
+ },
309
+ "shapes/tissues/.zgroup": {
310
+ "zarr_format": 2
311
+ },
312
+ "tables/.zgroup": {
313
+ "zarr_format": 2
314
+ },
315
+ "tables/virchow2_tiles/.zattrs": {
316
+ "encoding-type": "anndata",
317
+ "encoding-version": "0.1.0",
318
+ "instance_key": "tile_id",
319
+ "region": "tiles",
320
+ "region_key": "library_id",
321
+ "spatialdata-encoding-type": "ngff:regions_table",
322
+ "version": "0.1"
323
+ },
324
+ "tables/virchow2_tiles/.zgroup": {
325
+ "zarr_format": 2
326
+ },
327
+ "tables/virchow2_tiles/X/.zarray": {
328
+ "chunks": [
329
+ 1117,
330
+ 320
331
+ ],
332
+ "compressor": {
333
+ "blocksize": 0,
334
+ "clevel": 5,
335
+ "cname": "lz4",
336
+ "id": "blosc",
337
+ "shuffle": 1
338
+ },
339
+ "dimension_separator": "/",
340
+ "dtype": "<f4",
341
+ "fill_value": 0.0,
342
+ "filters": null,
343
+ "order": "C",
344
+ "shape": [
345
+ 17861,
346
+ 2560
347
+ ],
348
+ "zarr_format": 2
349
+ },
350
+ "tables/virchow2_tiles/X/.zattrs": {
351
+ "encoding-type": "array",
352
+ "encoding-version": "0.2.0"
353
+ },
354
+ "tables/virchow2_tiles/layers/.zattrs": {
355
+ "encoding-type": "dict",
356
+ "encoding-version": "0.1.0"
357
+ },
358
+ "tables/virchow2_tiles/layers/.zgroup": {
359
+ "zarr_format": 2
360
+ },
361
+ "tables/virchow2_tiles/obs/.zattrs": {
362
+ "_index": "_index",
363
+ "column-order": [
364
+ "tile_id",
365
+ "library_id"
366
+ ],
367
+ "encoding-type": "dataframe",
368
+ "encoding-version": "0.2.0"
369
+ },
370
+ "tables/virchow2_tiles/obs/.zgroup": {
371
+ "zarr_format": 2
372
+ },
373
+ "tables/virchow2_tiles/obs/_index/.zarray": {
374
+ "chunks": [
375
+ 17861
376
+ ],
377
+ "compressor": {
378
+ "blocksize": 0,
379
+ "clevel": 5,
380
+ "cname": "lz4",
381
+ "id": "blosc",
382
+ "shuffle": 1
383
+ },
384
+ "dimension_separator": "/",
385
+ "dtype": "|O",
386
+ "fill_value": 0,
387
+ "filters": [
388
+ {
389
+ "id": "vlen-utf8"
390
+ }
391
+ ],
392
+ "order": "C",
393
+ "shape": [
394
+ 17861
395
+ ],
396
+ "zarr_format": 2
397
+ },
398
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
399
+ "encoding-type": "string-array",
400
+ "encoding-version": "0.2.0"
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
403
+ "encoding-type": "categorical",
404
+ "encoding-version": "0.2.0",
405
+ "ordered": false
406
+ },
407
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
408
+ "zarr_format": 2
409
+ },
410
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
411
+ "chunks": [
412
+ 1
413
+ ],
414
+ "compressor": {
415
+ "blocksize": 0,
416
+ "clevel": 5,
417
+ "cname": "lz4",
418
+ "id": "blosc",
419
+ "shuffle": 1
420
+ },
421
+ "dimension_separator": "/",
422
+ "dtype": "|O",
423
+ "fill_value": 0,
424
+ "filters": [
425
+ {
426
+ "id": "vlen-utf8"
427
+ }
428
+ ],
429
+ "order": "C",
430
+ "shape": [
431
+ 1
432
+ ],
433
+ "zarr_format": 2
434
+ },
435
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
436
+ "encoding-type": "string-array",
437
+ "encoding-version": "0.2.0"
438
+ },
439
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
440
+ "chunks": [
441
+ 17861
442
+ ],
443
+ "compressor": {
444
+ "blocksize": 0,
445
+ "clevel": 5,
446
+ "cname": "lz4",
447
+ "id": "blosc",
448
+ "shuffle": 1
449
+ },
450
+ "dimension_separator": "/",
451
+ "dtype": "|i1",
452
+ "fill_value": 0,
453
+ "filters": null,
454
+ "order": "C",
455
+ "shape": [
456
+ 17861
457
+ ],
458
+ "zarr_format": 2
459
+ },
460
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
461
+ "encoding-type": "array",
462
+ "encoding-version": "0.2.0"
463
+ },
464
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
465
+ "chunks": [
466
+ 17861
467
+ ],
468
+ "compressor": {
469
+ "blocksize": 0,
470
+ "clevel": 5,
471
+ "cname": "lz4",
472
+ "id": "blosc",
473
+ "shuffle": 1
474
+ },
475
+ "dimension_separator": "/",
476
+ "dtype": "<i8",
477
+ "fill_value": 0,
478
+ "filters": null,
479
+ "order": "C",
480
+ "shape": [
481
+ 17861
482
+ ],
483
+ "zarr_format": 2
484
+ },
485
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
486
+ "encoding-type": "array",
487
+ "encoding-version": "0.2.0"
488
+ },
489
+ "tables/virchow2_tiles/obsm/.zattrs": {
490
+ "encoding-type": "dict",
491
+ "encoding-version": "0.1.0"
492
+ },
493
+ "tables/virchow2_tiles/obsm/.zgroup": {
494
+ "zarr_format": 2
495
+ },
496
+ "tables/virchow2_tiles/obsp/.zattrs": {
497
+ "encoding-type": "dict",
498
+ "encoding-version": "0.1.0"
499
+ },
500
+ "tables/virchow2_tiles/obsp/.zgroup": {
501
+ "zarr_format": 2
502
+ },
503
+ "tables/virchow2_tiles/raw/.zarray": {
504
+ "chunks": [],
505
+ "compressor": null,
506
+ "dimension_separator": "/",
507
+ "dtype": "<f8",
508
+ "fill_value": 0.0,
509
+ "filters": null,
510
+ "order": "C",
511
+ "shape": [],
512
+ "zarr_format": 2
513
+ },
514
+ "tables/virchow2_tiles/raw/.zattrs": {
515
+ "encoding-type": "null",
516
+ "encoding-version": "0.1.0"
517
+ },
518
+ "tables/virchow2_tiles/uns/.zattrs": {
519
+ "encoding-type": "dict",
520
+ "encoding-version": "0.1.0"
521
+ },
522
+ "tables/virchow2_tiles/uns/.zgroup": {
523
+ "zarr_format": 2
524
+ },
525
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
526
+ "encoding-type": "dict",
527
+ "encoding-version": "0.1.0"
528
+ },
529
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
530
+ "zarr_format": 2
531
+ },
532
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
533
+ "chunks": [],
534
+ "compressor": null,
535
+ "dimension_separator": "/",
536
+ "dtype": "<U7",
537
+ "fill_value": "",
538
+ "filters": null,
539
+ "order": "C",
540
+ "shape": [],
541
+ "zarr_format": 2
542
+ },
543
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
544
+ "encoding-type": "string",
545
+ "encoding-version": "0.2.0"
546
+ },
547
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
548
+ "chunks": [],
549
+ "compressor": null,
550
+ "dimension_separator": "/",
551
+ "dtype": "<U5",
552
+ "fill_value": "",
553
+ "filters": null,
554
+ "order": "C",
555
+ "shape": [],
556
+ "zarr_format": 2
557
+ },
558
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
559
+ "encoding-type": "string",
560
+ "encoding-version": "0.2.0"
561
+ },
562
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
563
+ "chunks": [],
564
+ "compressor": null,
565
+ "dimension_separator": "/",
566
+ "dtype": "<U10",
567
+ "fill_value": "",
568
+ "filters": null,
569
+ "order": "C",
570
+ "shape": [],
571
+ "zarr_format": 2
572
+ },
573
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
574
+ "encoding-type": "string",
575
+ "encoding-version": "0.2.0"
576
+ },
577
+ "tables/virchow2_tiles/var/.zattrs": {
578
+ "_index": "_index",
579
+ "column-order": [],
580
+ "encoding-type": "dataframe",
581
+ "encoding-version": "0.2.0"
582
+ },
583
+ "tables/virchow2_tiles/var/.zgroup": {
584
+ "zarr_format": 2
585
+ },
586
+ "tables/virchow2_tiles/var/_index/.zarray": {
587
+ "chunks": [
588
+ 2560
589
+ ],
590
+ "compressor": {
591
+ "blocksize": 0,
592
+ "clevel": 5,
593
+ "cname": "lz4",
594
+ "id": "blosc",
595
+ "shuffle": 1
596
+ },
597
+ "dimension_separator": "/",
598
+ "dtype": "|O",
599
+ "fill_value": 0,
600
+ "filters": [
601
+ {
602
+ "id": "vlen-utf8"
603
+ }
604
+ ],
605
+ "order": "C",
606
+ "shape": [
607
+ 2560
608
+ ],
609
+ "zarr_format": 2
610
+ },
611
+ "tables/virchow2_tiles/var/_index/.zattrs": {
612
+ "encoding-type": "string-array",
613
+ "encoding-version": "0.2.0"
614
+ },
615
+ "tables/virchow2_tiles/varm/.zattrs": {
616
+ "encoding-type": "dict",
617
+ "encoding-version": "0.1.0"
618
+ },
619
+ "tables/virchow2_tiles/varm/.zgroup": {
620
+ "zarr_format": 2
621
+ },
622
+ "tables/virchow2_tiles/varp/.zattrs": {
623
+ "encoding-type": "dict",
624
+ "encoding-version": "0.1.0"
625
+ },
626
+ "tables/virchow2_tiles/varp/.zgroup": {
627
+ "zarr_format": 2
628
+ }
629
+ },
630
+ "zarr_consolidated_format": 1
631
+ }
train/GTEX-13CZV-2426.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 63743,
7
+ 40458
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000193005262443,
12
+ 16.003860850863003
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 40458,
17
+ 63743
18
+ ],
19
+ [
20
+ 10114,
21
+ 15935
22
+ ],
23
+ [
24
+ 2528,
25
+ 3983
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/26/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003631\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53038\", \"aperio.Left\": \"16.004028\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"40558\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"15:23:42\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.874701\", \"aperio.User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"649\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"40458\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001930052624433\", \"openslide.level[1].height\": \"10114\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003860850863003\", \"openslide.level[2].height\": \"2528\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/26/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003631\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53038\", \"Left\": \"16.004028\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"40558\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"15:23:42\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.874701\", \"User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"649\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"40458\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001930052624433\", \"level[1].height\": \"10114\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003860850863003\", \"level[2].height\": \"2528\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 40458,
34
+ 63743
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-13CZV-2426.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13CZV-2426.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 63743,
9
+ 40458
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000193005262443,
14
+ 16.003860850863003
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 40458,
19
+ 63743
20
+ ],
21
+ [
22
+ 10114,
23
+ 15935
24
+ ],
25
+ [
26
+ 2528,
27
+ 3983
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/26/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003631\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53038\", \"aperio.Left\": \"16.004028\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"40558\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"15:23:42\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.874701\", \"aperio.User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"649\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"40458\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001930052624433\", \"openslide.level[1].height\": \"10114\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003860850863003\", \"openslide.level[2].height\": \"2528\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/26/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003631\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53038\", \"Left\": \"16.004028\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"40558\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"15:23:42\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.874701\", \"User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"649\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"40458\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001930052624433\", \"level[1].height\": \"10114\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003860850863003\", \"level[2].height\": \"2528\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 40458,
36
+ 63743
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 50.23089046493302,
124
+ 50.2583850931677
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 805,
187
+ 1269
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 805,
204
+ 1269
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 1671,
325
+ 160
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 26727,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 26727
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 26727
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 26727
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 26727
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 26727
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 26727
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-13N1W-2026.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 57767,
7
+ 43310
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000196232611438,
12
+ 16.00355637313613
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 43310,
17
+ 57767
18
+ ],
19
+ [
20
+ 10827,
21
+ 14441
22
+ ],
23
+ [
24
+ 2706,
25
+ 3610
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/10/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004201\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53628\", \"aperio.Left\": \"16.977787\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"43410\", \"aperio.OriginalWidth\": \"58928\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:29:38\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.455982\", \"aperio.User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"767\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"43310\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"57767\", \"openslide.level[1].downsample\": \"4.0001962326114384\", \"openslide.level[1].height\": \"10827\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"14441\", \"openslide.level[2].downsample\": \"16.003556373136131\", \"openslide.level[2].height\": \"2706\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3610\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/10/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004201\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53628\", \"Left\": \"16.977787\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"43410\", \"OriginalWidth\": \"58928\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:29:38\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.455982\", \"User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"767\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"43310\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"57767\", \"level[1].downsample\": \"4.0001962326114384\", \"level[1].height\": \"10827\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"14441\", \"level[2].downsample\": \"16.003556373136131\", \"level[2].height\": \"2706\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3610\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 43310,
34
+ 57767
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-13N1W-2026.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13N1W-2026.zarr/zmetadata ADDED
@@ -0,0 +1,626 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "metadata": {
3
+ ".zattrs": {
4
+ "slide_properties": {
5
+ "bounds": [
6
+ 0,
7
+ 0,
8
+ 57767,
9
+ 43310
10
+ ],
11
+ "level_downsample": [
12
+ 1.0,
13
+ 4.000196232611438,
14
+ 16.00355637313613
15
+ ],
16
+ "level_shape": [
17
+ [
18
+ 43310,
19
+ 57767
20
+ ],
21
+ [
22
+ 10827,
23
+ 14441
24
+ ],
25
+ [
26
+ 2706,
27
+ 3610
28
+ ]
29
+ ],
30
+ "magnification": 20.0,
31
+ "mpp": 0.4942,
32
+ "n_level": 3,
33
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/10/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004201\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53628\", \"aperio.Left\": \"16.977787\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"43410\", \"aperio.OriginalWidth\": \"58928\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:29:38\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.455982\", \"aperio.User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"767\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"43310\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"57767\", \"openslide.level[1].downsample\": \"4.0001962326114384\", \"openslide.level[1].height\": \"10827\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"14441\", \"openslide.level[2].downsample\": \"16.003556373136131\", \"openslide.level[2].height\": \"2706\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3610\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/10/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004201\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53628\", \"Left\": \"16.977787\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"43410\", \"OriginalWidth\": \"58928\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:29:38\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.455982\", \"User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"767\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"43310\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"57767\", \"level[1].downsample\": \"4.0001962326114384\", \"level[1].height\": \"10827\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"14441\", \"level[2].downsample\": \"16.003556373136131\", \"level[2].height\": \"2706\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3610\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
34
+ "shape": [
35
+ 43310,
36
+ 57767
37
+ ]
38
+ },
39
+ "spatialdata_attrs": {
40
+ "spatialdata_software_version": "0.5.0",
41
+ "version": "0.1"
42
+ },
43
+ "tile_spec": {
44
+ "tiles": {
45
+ "base_downsample": 1.0,
46
+ "base_level": 0,
47
+ "height": 128,
48
+ "mpp": 0.4942,
49
+ "ops_downsample": 1.0,
50
+ "ops_level": 0,
51
+ "stride_height": 128,
52
+ "stride_width": 128,
53
+ "tissue_name": "tissues",
54
+ "width": 128
55
+ }
56
+ }
57
+ },
58
+ ".zgroup": {
59
+ "zarr_format": 2
60
+ },
61
+ "images/.zgroup": {
62
+ "zarr_format": 2
63
+ },
64
+ "images/wsi_thumbnail/.zattrs": {
65
+ "multiscales": [
66
+ {
67
+ "axes": [
68
+ {
69
+ "name": "c",
70
+ "type": "channel"
71
+ },
72
+ {
73
+ "name": "y",
74
+ "type": "space"
75
+ },
76
+ {
77
+ "name": "x",
78
+ "type": "space"
79
+ }
80
+ ],
81
+ "coordinateTransformations": [
82
+ {
83
+ "input": {
84
+ "axes": [
85
+ {
86
+ "name": "c",
87
+ "type": "channel"
88
+ },
89
+ {
90
+ "name": "y",
91
+ "type": "space",
92
+ "unit": "unit"
93
+ },
94
+ {
95
+ "name": "x",
96
+ "type": "space",
97
+ "unit": "unit"
98
+ }
99
+ ],
100
+ "name": "cyx"
101
+ },
102
+ "output": {
103
+ "axes": [
104
+ {
105
+ "name": "c",
106
+ "type": "channel"
107
+ },
108
+ {
109
+ "name": "y",
110
+ "type": "space",
111
+ "unit": "unit"
112
+ },
113
+ {
114
+ "name": "x",
115
+ "type": "space",
116
+ "unit": "unit"
117
+ }
118
+ ],
119
+ "name": "global"
120
+ },
121
+ "scale": [
122
+ 1.0,
123
+ 38.537024683122084,
124
+ 38.53202846975089
125
+ ],
126
+ "type": "scale"
127
+ }
128
+ ],
129
+ "datasets": [
130
+ {
131
+ "coordinateTransformations": [
132
+ {
133
+ "scale": [
134
+ 1.0,
135
+ 1.0,
136
+ 1.0
137
+ ],
138
+ "type": "scale"
139
+ }
140
+ ],
141
+ "path": "0"
142
+ }
143
+ ],
144
+ "metadata": {
145
+ "omero": {
146
+ "channels": [
147
+ {
148
+ "label": 0
149
+ },
150
+ {
151
+ "label": 1
152
+ },
153
+ {
154
+ "label": 2
155
+ }
156
+ ]
157
+ }
158
+ },
159
+ "name": "/images/wsi_thumbnail",
160
+ "version": "0.4-dev-spatialdata"
161
+ }
162
+ ],
163
+ "omero": {
164
+ "channels": [
165
+ {
166
+ "label": 0
167
+ },
168
+ {
169
+ "label": 1
170
+ },
171
+ {
172
+ "label": 2
173
+ }
174
+ ]
175
+ },
176
+ "spatialdata_attrs": {
177
+ "version": "0.2"
178
+ }
179
+ },
180
+ "images/wsi_thumbnail/.zgroup": {
181
+ "zarr_format": 2
182
+ },
183
+ "images/wsi_thumbnail/0/.zarray": {
184
+ "chunks": [
185
+ 3,
186
+ 1124,
187
+ 1499
188
+ ],
189
+ "compressor": {
190
+ "blocksize": 0,
191
+ "clevel": 5,
192
+ "cname": "lz4",
193
+ "id": "blosc",
194
+ "shuffle": 1
195
+ },
196
+ "dimension_separator": "/",
197
+ "dtype": "|u1",
198
+ "fill_value": 0,
199
+ "filters": null,
200
+ "order": "C",
201
+ "shape": [
202
+ 3,
203
+ 1124,
204
+ 1499
205
+ ],
206
+ "zarr_format": 2
207
+ },
208
+ "shapes/.zgroup": {
209
+ "zarr_format": 2
210
+ },
211
+ "shapes/tiles/.zattrs": {
212
+ "axes": [
213
+ "x",
214
+ "y"
215
+ ],
216
+ "coordinateTransformations": [
217
+ {
218
+ "input": {
219
+ "axes": [
220
+ {
221
+ "name": "x",
222
+ "type": "space",
223
+ "unit": "unit"
224
+ },
225
+ {
226
+ "name": "y",
227
+ "type": "space",
228
+ "unit": "unit"
229
+ }
230
+ ],
231
+ "name": "xy"
232
+ },
233
+ "output": {
234
+ "axes": [
235
+ {
236
+ "name": "x",
237
+ "type": "space",
238
+ "unit": "unit"
239
+ },
240
+ {
241
+ "name": "y",
242
+ "type": "space",
243
+ "unit": "unit"
244
+ }
245
+ ],
246
+ "name": "global"
247
+ },
248
+ "type": "identity"
249
+ }
250
+ ],
251
+ "encoding-type": "ngff:shapes",
252
+ "spatialdata_attrs": {
253
+ "version": "0.2"
254
+ }
255
+ },
256
+ "shapes/tiles/.zgroup": {
257
+ "zarr_format": 2
258
+ },
259
+ "shapes/tissues/.zattrs": {
260
+ "axes": [
261
+ "x",
262
+ "y"
263
+ ],
264
+ "coordinateTransformations": [
265
+ {
266
+ "input": {
267
+ "axes": [
268
+ {
269
+ "name": "x",
270
+ "type": "space",
271
+ "unit": "unit"
272
+ },
273
+ {
274
+ "name": "y",
275
+ "type": "space",
276
+ "unit": "unit"
277
+ }
278
+ ],
279
+ "name": "xy"
280
+ },
281
+ "output": {
282
+ "axes": [
283
+ {
284
+ "name": "x",
285
+ "type": "space",
286
+ "unit": "unit"
287
+ },
288
+ {
289
+ "name": "y",
290
+ "type": "space",
291
+ "unit": "unit"
292
+ }
293
+ ],
294
+ "name": "global"
295
+ },
296
+ "type": "identity"
297
+ }
298
+ ],
299
+ "encoding-type": "ngff:shapes",
300
+ "spatialdata_attrs": {
301
+ "version": "0.2"
302
+ }
303
+ },
304
+ "shapes/tissues/.zgroup": {
305
+ "zarr_format": 2
306
+ },
307
+ "tables/.zgroup": {
308
+ "zarr_format": 2
309
+ },
310
+ "tables/virchow2_tiles/.zattrs": {
311
+ "encoding-type": "anndata",
312
+ "encoding-version": "0.1.0",
313
+ "instance_key": "tile_id",
314
+ "region": "tiles",
315
+ "region_key": "library_id",
316
+ "spatialdata-encoding-type": "ngff:regions_table",
317
+ "version": "0.1"
318
+ },
319
+ "tables/virchow2_tiles/.zgroup": {
320
+ "zarr_format": 2
321
+ },
322
+ "tables/virchow2_tiles/X/.zarray": {
323
+ "chunks": [
324
+ 1861,
325
+ 160
326
+ ],
327
+ "compressor": {
328
+ "blocksize": 0,
329
+ "clevel": 5,
330
+ "cname": "lz4",
331
+ "id": "blosc",
332
+ "shuffle": 1
333
+ },
334
+ "dimension_separator": "/",
335
+ "dtype": "<f4",
336
+ "fill_value": 0.0,
337
+ "filters": null,
338
+ "order": "C",
339
+ "shape": [
340
+ 29768,
341
+ 2560
342
+ ],
343
+ "zarr_format": 2
344
+ },
345
+ "tables/virchow2_tiles/X/.zattrs": {
346
+ "encoding-type": "array",
347
+ "encoding-version": "0.2.0"
348
+ },
349
+ "tables/virchow2_tiles/layers/.zattrs": {
350
+ "encoding-type": "dict",
351
+ "encoding-version": "0.1.0"
352
+ },
353
+ "tables/virchow2_tiles/layers/.zgroup": {
354
+ "zarr_format": 2
355
+ },
356
+ "tables/virchow2_tiles/obs/.zattrs": {
357
+ "_index": "_index",
358
+ "column-order": [
359
+ "tile_id",
360
+ "library_id"
361
+ ],
362
+ "encoding-type": "dataframe",
363
+ "encoding-version": "0.2.0"
364
+ },
365
+ "tables/virchow2_tiles/obs/.zgroup": {
366
+ "zarr_format": 2
367
+ },
368
+ "tables/virchow2_tiles/obs/_index/.zarray": {
369
+ "chunks": [
370
+ 29768
371
+ ],
372
+ "compressor": {
373
+ "blocksize": 0,
374
+ "clevel": 5,
375
+ "cname": "lz4",
376
+ "id": "blosc",
377
+ "shuffle": 1
378
+ },
379
+ "dimension_separator": "/",
380
+ "dtype": "|O",
381
+ "fill_value": 0,
382
+ "filters": [
383
+ {
384
+ "id": "vlen-utf8"
385
+ }
386
+ ],
387
+ "order": "C",
388
+ "shape": [
389
+ 29768
390
+ ],
391
+ "zarr_format": 2
392
+ },
393
+ "tables/virchow2_tiles/obs/_index/.zattrs": {
394
+ "encoding-type": "string-array",
395
+ "encoding-version": "0.2.0"
396
+ },
397
+ "tables/virchow2_tiles/obs/library_id/.zattrs": {
398
+ "encoding-type": "categorical",
399
+ "encoding-version": "0.2.0",
400
+ "ordered": false
401
+ },
402
+ "tables/virchow2_tiles/obs/library_id/.zgroup": {
403
+ "zarr_format": 2
404
+ },
405
+ "tables/virchow2_tiles/obs/library_id/categories/.zarray": {
406
+ "chunks": [
407
+ 1
408
+ ],
409
+ "compressor": {
410
+ "blocksize": 0,
411
+ "clevel": 5,
412
+ "cname": "lz4",
413
+ "id": "blosc",
414
+ "shuffle": 1
415
+ },
416
+ "dimension_separator": "/",
417
+ "dtype": "|O",
418
+ "fill_value": 0,
419
+ "filters": [
420
+ {
421
+ "id": "vlen-utf8"
422
+ }
423
+ ],
424
+ "order": "C",
425
+ "shape": [
426
+ 1
427
+ ],
428
+ "zarr_format": 2
429
+ },
430
+ "tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
431
+ "encoding-type": "string-array",
432
+ "encoding-version": "0.2.0"
433
+ },
434
+ "tables/virchow2_tiles/obs/library_id/codes/.zarray": {
435
+ "chunks": [
436
+ 29768
437
+ ],
438
+ "compressor": {
439
+ "blocksize": 0,
440
+ "clevel": 5,
441
+ "cname": "lz4",
442
+ "id": "blosc",
443
+ "shuffle": 1
444
+ },
445
+ "dimension_separator": "/",
446
+ "dtype": "|i1",
447
+ "fill_value": 0,
448
+ "filters": null,
449
+ "order": "C",
450
+ "shape": [
451
+ 29768
452
+ ],
453
+ "zarr_format": 2
454
+ },
455
+ "tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
456
+ "encoding-type": "array",
457
+ "encoding-version": "0.2.0"
458
+ },
459
+ "tables/virchow2_tiles/obs/tile_id/.zarray": {
460
+ "chunks": [
461
+ 29768
462
+ ],
463
+ "compressor": {
464
+ "blocksize": 0,
465
+ "clevel": 5,
466
+ "cname": "lz4",
467
+ "id": "blosc",
468
+ "shuffle": 1
469
+ },
470
+ "dimension_separator": "/",
471
+ "dtype": "<i8",
472
+ "fill_value": 0,
473
+ "filters": null,
474
+ "order": "C",
475
+ "shape": [
476
+ 29768
477
+ ],
478
+ "zarr_format": 2
479
+ },
480
+ "tables/virchow2_tiles/obs/tile_id/.zattrs": {
481
+ "encoding-type": "array",
482
+ "encoding-version": "0.2.0"
483
+ },
484
+ "tables/virchow2_tiles/obsm/.zattrs": {
485
+ "encoding-type": "dict",
486
+ "encoding-version": "0.1.0"
487
+ },
488
+ "tables/virchow2_tiles/obsm/.zgroup": {
489
+ "zarr_format": 2
490
+ },
491
+ "tables/virchow2_tiles/obsp/.zattrs": {
492
+ "encoding-type": "dict",
493
+ "encoding-version": "0.1.0"
494
+ },
495
+ "tables/virchow2_tiles/obsp/.zgroup": {
496
+ "zarr_format": 2
497
+ },
498
+ "tables/virchow2_tiles/raw/.zarray": {
499
+ "chunks": [],
500
+ "compressor": null,
501
+ "dimension_separator": "/",
502
+ "dtype": "<f8",
503
+ "fill_value": 0.0,
504
+ "filters": null,
505
+ "order": "C",
506
+ "shape": [],
507
+ "zarr_format": 2
508
+ },
509
+ "tables/virchow2_tiles/raw/.zattrs": {
510
+ "encoding-type": "null",
511
+ "encoding-version": "0.1.0"
512
+ },
513
+ "tables/virchow2_tiles/uns/.zattrs": {
514
+ "encoding-type": "dict",
515
+ "encoding-version": "0.1.0"
516
+ },
517
+ "tables/virchow2_tiles/uns/.zgroup": {
518
+ "zarr_format": 2
519
+ },
520
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
521
+ "encoding-type": "dict",
522
+ "encoding-version": "0.1.0"
523
+ },
524
+ "tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
525
+ "zarr_format": 2
526
+ },
527
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
528
+ "chunks": [],
529
+ "compressor": null,
530
+ "dimension_separator": "/",
531
+ "dtype": "<U7",
532
+ "fill_value": "",
533
+ "filters": null,
534
+ "order": "C",
535
+ "shape": [],
536
+ "zarr_format": 2
537
+ },
538
+ "tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
539
+ "encoding-type": "string",
540
+ "encoding-version": "0.2.0"
541
+ },
542
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
543
+ "chunks": [],
544
+ "compressor": null,
545
+ "dimension_separator": "/",
546
+ "dtype": "<U5",
547
+ "fill_value": "",
548
+ "filters": null,
549
+ "order": "C",
550
+ "shape": [],
551
+ "zarr_format": 2
552
+ },
553
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
554
+ "encoding-type": "string",
555
+ "encoding-version": "0.2.0"
556
+ },
557
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
558
+ "chunks": [],
559
+ "compressor": null,
560
+ "dimension_separator": "/",
561
+ "dtype": "<U10",
562
+ "fill_value": "",
563
+ "filters": null,
564
+ "order": "C",
565
+ "shape": [],
566
+ "zarr_format": 2
567
+ },
568
+ "tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
569
+ "encoding-type": "string",
570
+ "encoding-version": "0.2.0"
571
+ },
572
+ "tables/virchow2_tiles/var/.zattrs": {
573
+ "_index": "_index",
574
+ "column-order": [],
575
+ "encoding-type": "dataframe",
576
+ "encoding-version": "0.2.0"
577
+ },
578
+ "tables/virchow2_tiles/var/.zgroup": {
579
+ "zarr_format": 2
580
+ },
581
+ "tables/virchow2_tiles/var/_index/.zarray": {
582
+ "chunks": [
583
+ 2560
584
+ ],
585
+ "compressor": {
586
+ "blocksize": 0,
587
+ "clevel": 5,
588
+ "cname": "lz4",
589
+ "id": "blosc",
590
+ "shuffle": 1
591
+ },
592
+ "dimension_separator": "/",
593
+ "dtype": "|O",
594
+ "fill_value": 0,
595
+ "filters": [
596
+ {
597
+ "id": "vlen-utf8"
598
+ }
599
+ ],
600
+ "order": "C",
601
+ "shape": [
602
+ 2560
603
+ ],
604
+ "zarr_format": 2
605
+ },
606
+ "tables/virchow2_tiles/var/_index/.zattrs": {
607
+ "encoding-type": "string-array",
608
+ "encoding-version": "0.2.0"
609
+ },
610
+ "tables/virchow2_tiles/varm/.zattrs": {
611
+ "encoding-type": "dict",
612
+ "encoding-version": "0.1.0"
613
+ },
614
+ "tables/virchow2_tiles/varm/.zgroup": {
615
+ "zarr_format": 2
616
+ },
617
+ "tables/virchow2_tiles/varp/.zattrs": {
618
+ "encoding-type": "dict",
619
+ "encoding-version": "0.1.0"
620
+ },
621
+ "tables/virchow2_tiles/varp/.zgroup": {
622
+ "zarr_format": 2
623
+ }
624
+ },
625
+ "zarr_consolidated_format": 1
626
+ }
train/GTEX-13NYB-1426.zarr/.zattrs ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "slide_properties": {
3
+ "bounds": [
4
+ 0,
5
+ 0,
6
+ 51791,
7
+ 39041
8
+ ],
9
+ "level_downsample": [
10
+ 1.0,
11
+ 4.000167086463476,
12
+ 16.002522594176174
13
+ ],
14
+ "level_shape": [
15
+ [
16
+ 39041,
17
+ 51791
18
+ ],
19
+ [
20
+ 9760,
21
+ 12947
22
+ ],
23
+ [
24
+ 2440,
25
+ 3236
26
+ ]
27
+ ],
28
+ "magnification": 20.0,
29
+ "mpp": 0.4942,
30
+ "n_level": 3,
31
+ "raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/11/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004410-001\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53776\", \"aperio.Left\": \"15.068634\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39141\", \"aperio.OriginalWidth\": \"52832\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"18:26:18\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.073389\", \"aperio.User\": \"63878458-d1aa-460a-994f-ae867d93d4c3\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1018\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39041\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"51791\", \"openslide.level[1].downsample\": \"4.0001670864634757\", \"openslide.level[1].height\": \"9760\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12947\", \"openslide.level[2].downsample\": \"16.002522594176174\", \"openslide.level[2].height\": \"2440\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3236\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"e1d358b8a32d0d1994e278eab7bb4c5e27baacb85ebbe59b5fddf67d4637e6ef\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/11/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004410-001\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53776\", \"Left\": \"15.068634\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39141\", \"OriginalWidth\": \"52832\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"18:26:18\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.073389\", \"User\": \"63878458-d1aa-460a-994f-ae867d93d4c3\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1018\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39041\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"51791\", \"level[1].downsample\": \"4.0001670864634757\", \"level[1].height\": \"9760\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12947\", \"level[2].downsample\": \"16.002522594176174\", \"level[2].height\": \"2440\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3236\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"e1d358b8a32d0d1994e278eab7bb4c5e27baacb85ebbe59b5fddf67d4637e6ef\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
32
+ "shape": [
33
+ 39041,
34
+ 51791
35
+ ]
36
+ },
37
+ "spatialdata_attrs": {
38
+ "spatialdata_software_version": "0.5.0",
39
+ "version": "0.1"
40
+ },
41
+ "tile_spec": {
42
+ "tiles": {
43
+ "base_downsample": 1.0,
44
+ "base_level": 0,
45
+ "height": 128,
46
+ "mpp": 0.4942,
47
+ "ops_downsample": 1.0,
48
+ "ops_level": 0,
49
+ "stride_height": 128,
50
+ "stride_width": 128,
51
+ "tissue_name": "tissues",
52
+ "width": 128
53
+ }
54
+ }
55
+ }
train/GTEX-13NYB-1426.zarr/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/images/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/shapes/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zattrs ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "encoding-type": "anndata",
3
+ "encoding-version": "0.1.0",
4
+ "instance_key": "tile_id",
5
+ "region": "tiles",
6
+ "region_key": "library_id",
7
+ "spatialdata-encoding-type": "ngff:regions_table",
8
+ "version": "0.1"
9
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zarray ADDED
@@ -0,0 +1,23 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "chunks": [
3
+ 1789,
4
+ 160
5
+ ],
6
+ "compressor": {
7
+ "blocksize": 0,
8
+ "clevel": 5,
9
+ "cname": "lz4",
10
+ "id": "blosc",
11
+ "shuffle": 1
12
+ },
13
+ "dimension_separator": "/",
14
+ "dtype": "<f4",
15
+ "fill_value": 0.0,
16
+ "filters": null,
17
+ "order": "C",
18
+ "shape": [
19
+ 28619,
20
+ 2560
21
+ ],
22
+ "zarr_format": 2
23
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zattrs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "encoding-type": "array",
3
+ "encoding-version": "0.2.0"
4
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zattrs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "encoding-type": "dict",
3
+ "encoding-version": "0.1.0"
4
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zattrs ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_index": "_index",
3
+ "column-order": [
4
+ "tile_id",
5
+ "library_id"
6
+ ],
7
+ "encoding-type": "dataframe",
8
+ "encoding-version": "0.2.0"
9
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zarray ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "chunks": [
3
+ 28619
4
+ ],
5
+ "compressor": {
6
+ "blocksize": 0,
7
+ "clevel": 5,
8
+ "cname": "lz4",
9
+ "id": "blosc",
10
+ "shuffle": 1
11
+ },
12
+ "dimension_separator": "/",
13
+ "dtype": "|O",
14
+ "fill_value": 0,
15
+ "filters": [
16
+ {
17
+ "id": "vlen-utf8"
18
+ }
19
+ ],
20
+ "order": "C",
21
+ "shape": [
22
+ 28619
23
+ ],
24
+ "zarr_format": 2
25
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zattrs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "encoding-type": "string-array",
3
+ "encoding-version": "0.2.0"
4
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zattrs ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ {
2
+ "encoding-type": "categorical",
3
+ "encoding-version": "0.2.0",
4
+ "ordered": false
5
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zgroup ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ {
2
+ "zarr_format": 2
3
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zarray ADDED
@@ -0,0 +1,25 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "chunks": [
3
+ 1
4
+ ],
5
+ "compressor": {
6
+ "blocksize": 0,
7
+ "clevel": 5,
8
+ "cname": "lz4",
9
+ "id": "blosc",
10
+ "shuffle": 1
11
+ },
12
+ "dimension_separator": "/",
13
+ "dtype": "|O",
14
+ "fill_value": 0,
15
+ "filters": [
16
+ {
17
+ "id": "vlen-utf8"
18
+ }
19
+ ],
20
+ "order": "C",
21
+ "shape": [
22
+ 1
23
+ ],
24
+ "zarr_format": 2
25
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zattrs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "encoding-type": "string-array",
3
+ "encoding-version": "0.2.0"
4
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zarray ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "chunks": [
3
+ 28619
4
+ ],
5
+ "compressor": {
6
+ "blocksize": 0,
7
+ "clevel": 5,
8
+ "cname": "lz4",
9
+ "id": "blosc",
10
+ "shuffle": 1
11
+ },
12
+ "dimension_separator": "/",
13
+ "dtype": "|i1",
14
+ "fill_value": 0,
15
+ "filters": null,
16
+ "order": "C",
17
+ "shape": [
18
+ 28619
19
+ ],
20
+ "zarr_format": 2
21
+ }
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zattrs ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "encoding-type": "array",
3
+ "encoding-version": "0.2.0"
4
+ }