Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes.
See raw diff
- test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zattrs +116 -0
- test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zgroup +3 -0
- test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/.zarray +25 -0
- test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/0/0/0 +0 -0
- test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zattrs +45 -0
- test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zgroup +3 -0
- test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zattrs +45 -0
- test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zgroup +3 -0
- train/GTEX-111FC-2126.zarr/.zattrs +55 -0
- train/GTEX-111FC-2126.zarr/.zgroup +3 -0
- train/GTEX-111FC-2126.zarr/zmetadata +626 -0
- train/GTEX-11WQK-2626.zarr/.zattrs +55 -0
- train/GTEX-11WQK-2626.zarr/.zgroup +3 -0
- train/GTEX-11WQK-2626.zarr/zmetadata +626 -0
- train/GTEX-12ZZW-2226.zarr/.zattrs +55 -0
- train/GTEX-12ZZW-2226.zarr/.zgroup +3 -0
- train/GTEX-12ZZW-2226.zarr/zmetadata +626 -0
- train/GTEX-13111-1226.zarr/.zattrs +55 -0
- train/GTEX-13111-1226.zarr/.zgroup +3 -0
- train/GTEX-13111-1226.zarr/zmetadata +626 -0
- train/GTEX-139YR-1926.zarr/.zattrs +60 -0
- train/GTEX-139YR-1926.zarr/.zgroup +3 -0
- train/GTEX-139YR-1926.zarr/zmetadata +631 -0
- train/GTEX-13CZV-2426.zarr/.zattrs +55 -0
- train/GTEX-13CZV-2426.zarr/.zgroup +3 -0
- train/GTEX-13CZV-2426.zarr/zmetadata +626 -0
- train/GTEX-13N1W-2026.zarr/.zattrs +55 -0
- train/GTEX-13N1W-2026.zarr/.zgroup +3 -0
- train/GTEX-13N1W-2026.zarr/zmetadata +626 -0
- train/GTEX-13NYB-1426.zarr/.zattrs +55 -0
- train/GTEX-13NYB-1426.zarr/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/images/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/shapes/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zattrs +9 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zarray +23 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zattrs +4 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zattrs +4 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zattrs +9 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zarray +25 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zattrs +4 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zattrs +5 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zgroup +3 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zarray +25 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zattrs +4 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zarray +21 -0
- train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zattrs +4 -0
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zattrs
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"multiscales": [
|
| 3 |
+
{
|
| 4 |
+
"axes": [
|
| 5 |
+
{
|
| 6 |
+
"name": "c",
|
| 7 |
+
"type": "channel"
|
| 8 |
+
},
|
| 9 |
+
{
|
| 10 |
+
"name": "y",
|
| 11 |
+
"type": "space"
|
| 12 |
+
},
|
| 13 |
+
{
|
| 14 |
+
"name": "x",
|
| 15 |
+
"type": "space"
|
| 16 |
+
}
|
| 17 |
+
],
|
| 18 |
+
"coordinateTransformations": [
|
| 19 |
+
{
|
| 20 |
+
"input": {
|
| 21 |
+
"axes": [
|
| 22 |
+
{
|
| 23 |
+
"name": "c",
|
| 24 |
+
"type": "channel"
|
| 25 |
+
},
|
| 26 |
+
{
|
| 27 |
+
"name": "y",
|
| 28 |
+
"type": "space",
|
| 29 |
+
"unit": "unit"
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"name": "x",
|
| 33 |
+
"type": "space",
|
| 34 |
+
"unit": "unit"
|
| 35 |
+
}
|
| 36 |
+
],
|
| 37 |
+
"name": "cyx"
|
| 38 |
+
},
|
| 39 |
+
"output": {
|
| 40 |
+
"axes": [
|
| 41 |
+
{
|
| 42 |
+
"name": "c",
|
| 43 |
+
"type": "channel"
|
| 44 |
+
},
|
| 45 |
+
{
|
| 46 |
+
"name": "y",
|
| 47 |
+
"type": "space",
|
| 48 |
+
"unit": "unit"
|
| 49 |
+
},
|
| 50 |
+
{
|
| 51 |
+
"name": "x",
|
| 52 |
+
"type": "space",
|
| 53 |
+
"unit": "unit"
|
| 54 |
+
}
|
| 55 |
+
],
|
| 56 |
+
"name": "global"
|
| 57 |
+
},
|
| 58 |
+
"scale": [
|
| 59 |
+
1.0,
|
| 60 |
+
31.69298762522098,
|
| 61 |
+
31.67800138792505
|
| 62 |
+
],
|
| 63 |
+
"type": "scale"
|
| 64 |
+
}
|
| 65 |
+
],
|
| 66 |
+
"datasets": [
|
| 67 |
+
{
|
| 68 |
+
"coordinateTransformations": [
|
| 69 |
+
{
|
| 70 |
+
"scale": [
|
| 71 |
+
1.0,
|
| 72 |
+
1.0,
|
| 73 |
+
1.0
|
| 74 |
+
],
|
| 75 |
+
"type": "scale"
|
| 76 |
+
}
|
| 77 |
+
],
|
| 78 |
+
"path": "0"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"metadata": {
|
| 82 |
+
"omero": {
|
| 83 |
+
"channels": [
|
| 84 |
+
{
|
| 85 |
+
"label": 0
|
| 86 |
+
},
|
| 87 |
+
{
|
| 88 |
+
"label": 1
|
| 89 |
+
},
|
| 90 |
+
{
|
| 91 |
+
"label": 2
|
| 92 |
+
}
|
| 93 |
+
]
|
| 94 |
+
}
|
| 95 |
+
},
|
| 96 |
+
"name": "/images/wsi_thumbnail",
|
| 97 |
+
"version": "0.4-dev-spatialdata"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"omero": {
|
| 101 |
+
"channels": [
|
| 102 |
+
{
|
| 103 |
+
"label": 0
|
| 104 |
+
},
|
| 105 |
+
{
|
| 106 |
+
"label": 1
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"label": 2
|
| 110 |
+
}
|
| 111 |
+
]
|
| 112 |
+
},
|
| 113 |
+
"spatialdata_attrs": {
|
| 114 |
+
"version": "0.2"
|
| 115 |
+
}
|
| 116 |
+
}
|
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/.zarray
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"chunks": [
|
| 3 |
+
3,
|
| 4 |
+
1441,
|
| 5 |
+
1697
|
| 6 |
+
],
|
| 7 |
+
"compressor": {
|
| 8 |
+
"blocksize": 0,
|
| 9 |
+
"clevel": 5,
|
| 10 |
+
"cname": "lz4",
|
| 11 |
+
"id": "blosc",
|
| 12 |
+
"shuffle": 1
|
| 13 |
+
},
|
| 14 |
+
"dimension_separator": "/",
|
| 15 |
+
"dtype": "|u1",
|
| 16 |
+
"fill_value": 0,
|
| 17 |
+
"filters": null,
|
| 18 |
+
"order": "C",
|
| 19 |
+
"shape": [
|
| 20 |
+
3,
|
| 21 |
+
1441,
|
| 22 |
+
1697
|
| 23 |
+
],
|
| 24 |
+
"zarr_format": 2
|
| 25 |
+
}
|
test/GTEX-1JJE9-2026.zarr/images/wsi_thumbnail/0/0/0/0
ADDED
|
Binary file (29.8 kB). View file
|
|
|
test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zattrs
ADDED
|
@@ -0,0 +1,45 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"axes": [
|
| 3 |
+
"x",
|
| 4 |
+
"y"
|
| 5 |
+
],
|
| 6 |
+
"coordinateTransformations": [
|
| 7 |
+
{
|
| 8 |
+
"input": {
|
| 9 |
+
"axes": [
|
| 10 |
+
{
|
| 11 |
+
"name": "x",
|
| 12 |
+
"type": "space",
|
| 13 |
+
"unit": "unit"
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"name": "y",
|
| 17 |
+
"type": "space",
|
| 18 |
+
"unit": "unit"
|
| 19 |
+
}
|
| 20 |
+
],
|
| 21 |
+
"name": "xy"
|
| 22 |
+
},
|
| 23 |
+
"output": {
|
| 24 |
+
"axes": [
|
| 25 |
+
{
|
| 26 |
+
"name": "x",
|
| 27 |
+
"type": "space",
|
| 28 |
+
"unit": "unit"
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"name": "y",
|
| 32 |
+
"type": "space",
|
| 33 |
+
"unit": "unit"
|
| 34 |
+
}
|
| 35 |
+
],
|
| 36 |
+
"name": "global"
|
| 37 |
+
},
|
| 38 |
+
"type": "identity"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"encoding-type": "ngff:shapes",
|
| 42 |
+
"spatialdata_attrs": {
|
| 43 |
+
"version": "0.2"
|
| 44 |
+
}
|
| 45 |
+
}
|
test/GTEX-1JJE9-2026.zarr/shapes/tiles/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zattrs
ADDED
|
@@ -0,0 +1,45 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"axes": [
|
| 3 |
+
"x",
|
| 4 |
+
"y"
|
| 5 |
+
],
|
| 6 |
+
"coordinateTransformations": [
|
| 7 |
+
{
|
| 8 |
+
"input": {
|
| 9 |
+
"axes": [
|
| 10 |
+
{
|
| 11 |
+
"name": "x",
|
| 12 |
+
"type": "space",
|
| 13 |
+
"unit": "unit"
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"name": "y",
|
| 17 |
+
"type": "space",
|
| 18 |
+
"unit": "unit"
|
| 19 |
+
}
|
| 20 |
+
],
|
| 21 |
+
"name": "xy"
|
| 22 |
+
},
|
| 23 |
+
"output": {
|
| 24 |
+
"axes": [
|
| 25 |
+
{
|
| 26 |
+
"name": "x",
|
| 27 |
+
"type": "space",
|
| 28 |
+
"unit": "unit"
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"name": "y",
|
| 32 |
+
"type": "space",
|
| 33 |
+
"unit": "unit"
|
| 34 |
+
}
|
| 35 |
+
],
|
| 36 |
+
"name": "global"
|
| 37 |
+
},
|
| 38 |
+
"type": "identity"
|
| 39 |
+
}
|
| 40 |
+
],
|
| 41 |
+
"encoding-type": "ngff:shapes",
|
| 42 |
+
"spatialdata_attrs": {
|
| 43 |
+
"version": "0.2"
|
| 44 |
+
}
|
| 45 |
+
}
|
test/GTEX-1JJE9-2026.zarr/shapes/tissues/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-111FC-2126.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
49799,
|
| 7 |
+
37728
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000120491605752,
|
| 12 |
+
16.00112467866324
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
37728,
|
| 17 |
+
49799
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
9432,
|
| 21 |
+
12449
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2358,
|
| 25 |
+
3112
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"05/09/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"2070653\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"46757\", \"aperio.Left\": \"10.676636\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"37828\", \"aperio.OriginalWidth\": \"50800\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:54:45\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.659782\", \"aperio.User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1013\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"37728\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"49799\", \"openslide.level[1].downsample\": \"4.0001204916057516\", \"openslide.level[1].height\": \"9432\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12449\", \"openslide.level[2].downsample\": \"16.001124678663238\", \"openslide.level[2].height\": \"2358\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3112\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"05/09/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"2070653\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"46757\", \"Left\": \"10.676636\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"37828\", \"OriginalWidth\": \"50800\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:54:45\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.659782\", \"User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1013\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"37728\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"49799\", \"level[1].downsample\": \"4.0001204916057516\", \"level[1].height\": \"9432\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12449\", \"level[2].downsample\": \"16.001124678663238\", \"level[2].height\": \"2358\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3112\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
37728,
|
| 34 |
+
49799
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-111FC-2126.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-111FC-2126.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
49799,
|
| 9 |
+
37728
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000120491605752,
|
| 14 |
+
16.00112467866324
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
37728,
|
| 19 |
+
49799
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
9432,
|
| 23 |
+
12449
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2358,
|
| 27 |
+
3112
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"05/09/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"2070653\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"46757\", \"aperio.Left\": \"10.676636\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"37828\", \"aperio.OriginalWidth\": \"50800\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:54:45\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.659782\", \"aperio.User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1013\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"37728\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"49799\", \"openslide.level[1].downsample\": \"4.0001204916057516\", \"openslide.level[1].height\": \"9432\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12449\", \"openslide.level[2].downsample\": \"16.001124678663238\", \"openslide.level[2].height\": \"2358\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3112\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"05/09/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"2070653\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"46757\", \"Left\": \"10.676636\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"37828\", \"OriginalWidth\": \"50800\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:54:45\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.659782\", \"User\": \"6db94e97-cd2c-4b0e-8d94-564274846432\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1013\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"37728\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"49799\", \"level[1].downsample\": \"4.0001204916057516\", \"level[1].height\": \"9432\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12449\", \"level[2].downsample\": \"16.001124678663238\", \"level[2].height\": \"2358\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3112\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"2c1f6732959c40fc8ae88613e711bf735e4fdf54ec7f524fc251cd937c90062e\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n50800x37828 [0,100 49799x37728] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 2070653|Date = 05/09/13|Time = 08:54:45|Time Zone = GMT-04:00|User = 6db94e97-cd2c-4b0e-8d94-564274846432|MPP = 0.4942|Left = 10.676636|Top = 21.659782|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 46757|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 50800|OriginalHeight = 37828|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
37728,
|
| 36 |
+
49799
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
32.87062706270627,
|
| 124 |
+
32.86411149825784
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
1148,
|
| 187 |
+
1515
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
1148,
|
| 204 |
+
1515
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
949,
|
| 325 |
+
320
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
15176,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
15176
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
15176
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
15176
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
15176
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
15176
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
15176
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-11WQK-2626.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
55775,
|
| 7 |
+
39768
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000107580864951,
|
| 12 |
+
16.00376173829202
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
39768,
|
| 17 |
+
55775
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
9942,
|
| 21 |
+
13943
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2485,
|
| 25 |
+
3485
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"07/05/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"48518\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"48518\", \"aperio.Left\": \"14.132294\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39868\", \"aperio.OriginalWidth\": \"56896\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:12:20\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.416668\", \"aperio.User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"730\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39768\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"55775\", \"openslide.level[1].downsample\": \"4.0001075808649507\", \"openslide.level[1].height\": \"9942\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"13943\", \"openslide.level[2].downsample\": \"16.00376173829202\", \"openslide.level[2].height\": \"2485\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3485\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"07/05/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"48518\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"48518\", \"Left\": \"14.132294\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39868\", \"OriginalWidth\": \"56896\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:12:20\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.416668\", \"User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"730\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39768\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"55775\", \"level[1].downsample\": \"4.0001075808649507\", \"level[1].height\": \"9942\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"13943\", \"level[2].downsample\": \"16.00376173829202\", \"level[2].height\": \"2485\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3485\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
39768,
|
| 34 |
+
55775
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-11WQK-2626.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-11WQK-2626.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
55775,
|
| 9 |
+
39768
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000107580864951,
|
| 14 |
+
16.00376173829202
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
39768,
|
| 19 |
+
55775
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
9942,
|
| 23 |
+
13943
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2485,
|
| 27 |
+
3485
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"07/05/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"48518\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"48518\", \"aperio.Left\": \"14.132294\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39868\", \"aperio.OriginalWidth\": \"56896\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:12:20\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.416668\", \"aperio.User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"730\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39768\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"55775\", \"openslide.level[1].downsample\": \"4.0001075808649507\", \"openslide.level[1].height\": \"9942\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"13943\", \"openslide.level[2].downsample\": \"16.00376173829202\", \"openslide.level[2].height\": \"2485\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3485\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"07/05/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"48518\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"48518\", \"Left\": \"14.132294\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39868\", \"OriginalWidth\": \"56896\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:12:20\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.416668\", \"User\": \"89af4185-cbbe-43fc-97d7-9ff20b347082\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"730\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39768\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"55775\", \"level[1].downsample\": \"4.0001075808649507\", \"level[1].height\": \"9942\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"13943\", \"level[2].downsample\": \"16.00376173829202\", \"level[2].height\": \"2485\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3485\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"326c915834a60b6ff56836d744fac997a86cf252ef9cb24cc9e75f4e65b69040\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n56896x39868 [0,100 55775x39768] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 48518|Date = 07/05/13|Time = 11:12:20|Time Zone = GMT-04:00|User = 89af4185-cbbe-43fc-97d7-9ff20b347082|MPP = 0.4942|Left = 14.132294|Top = 22.416668|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 48518|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 56896|OriginalHeight = 39868|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
39768,
|
| 36 |
+
55775
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
39.11290322580645,
|
| 124 |
+
39.10324483775811
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
1017,
|
| 187 |
+
1426
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
1017,
|
| 204 |
+
1426
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
1009,
|
| 325 |
+
320
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
16131,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
16131
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
16131
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
16131
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
16131
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
16131
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
16131
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-12ZZW-2226.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
63743,
|
| 7 |
+
41865
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000141906156478,
|
| 12 |
+
16.003603186247975
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
41865,
|
| 17 |
+
63743
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
10466,
|
| 21 |
+
15935
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2616,
|
| 25 |
+
3983
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/19/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002128\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51278\", \"aperio.Left\": \"13.115914\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41965\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:13:52\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.206078\", \"aperio.User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"672\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41865\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.000141906156478\", \"openslide.level[1].height\": \"10466\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003603186247975\", \"openslide.level[2].height\": \"2616\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/19/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002128\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51278\", \"Left\": \"13.115914\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41965\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:13:52\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.206078\", \"User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"672\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41865\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.000141906156478\", \"level[1].height\": \"10466\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003603186247975\", \"level[2].height\": \"2616\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
41865,
|
| 34 |
+
63743
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-12ZZW-2226.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-12ZZW-2226.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
63743,
|
| 9 |
+
41865
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000141906156478,
|
| 14 |
+
16.003603186247975
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
41865,
|
| 19 |
+
63743
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
10466,
|
| 23 |
+
15935
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2616,
|
| 27 |
+
3983
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/19/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002128\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51278\", \"aperio.Left\": \"13.115914\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41965\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:13:52\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"22.206078\", \"aperio.User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"672\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41865\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.000141906156478\", \"openslide.level[1].height\": \"10466\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003603186247975\", \"openslide.level[2].height\": \"2616\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/19/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002128\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51278\", \"Left\": \"13.115914\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41965\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:13:52\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"22.206078\", \"User\": \"0ebb75f8-f462-4b11-9533-89391dc3959c\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"672\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41865\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.000141906156478\", \"level[1].height\": \"10466\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003603186247975\", \"level[2].height\": \"2616\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"83bba0b73380ac006f03a9e67eea290f3568fafe65d993b09b4966c8065ffbf6\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41965 [0,100 63743x41865] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002128|Date = 08/19/13|Time = 11:13:52|Time Zone = GMT-04:00|User = 0ebb75f8-f462-4b11-9533-89391dc3959c|MPP = 0.4942|Left = 13.115914|Top = 22.206078|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51278|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41965|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
41865,
|
| 36 |
+
63743
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
48.54760091393755,
|
| 124 |
+
48.567285382830626
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
862,
|
| 187 |
+
1313
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
862,
|
| 204 |
+
1313
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
1623,
|
| 325 |
+
320
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
25968,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
25968
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
25968
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
25968
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
25968
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
25968
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
25968
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-13111-1226.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
63743,
|
| 7 |
+
41702
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000190055674318,
|
| 12 |
+
16.003034192324286
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
41702,
|
| 17 |
+
63743
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
10425,
|
| 21 |
+
15935
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2606,
|
| 25 |
+
3983
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/22/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002235\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51419\", \"aperio.Left\": \"16.327196\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41802\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"14:04:43\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.452015\", \"aperio.User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"669\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41702\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001900556743184\", \"openslide.level[1].height\": \"10425\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003034192324286\", \"openslide.level[2].height\": \"2606\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/22/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002235\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51419\", \"Left\": \"16.327196\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41802\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"14:04:43\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.452015\", \"User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"669\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41702\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001900556743184\", \"level[1].height\": \"10425\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003034192324286\", \"level[2].height\": \"2606\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
41702,
|
| 34 |
+
63743
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-13111-1226.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13111-1226.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
63743,
|
| 9 |
+
41702
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000190055674318,
|
| 14 |
+
16.003034192324286
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
41702,
|
| 19 |
+
63743
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
10425,
|
| 23 |
+
15935
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2606,
|
| 27 |
+
3983
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"08/22/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3002235\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"51419\", \"aperio.Left\": \"16.327196\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"41802\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"14:04:43\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.452015\", \"aperio.User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"669\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"41702\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001900556743184\", \"openslide.level[1].height\": \"10425\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003034192324286\", \"openslide.level[2].height\": \"2606\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"08/22/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3002235\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"51419\", \"Left\": \"16.327196\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"41802\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"14:04:43\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.452015\", \"User\": \"926ffdbd-034b-41ba-bde4-4a9641958e87\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"669\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"41702\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001900556743184\", \"level[1].height\": \"10425\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003034192324286\", \"level[2].height\": \"2606\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f047929ff70de3cc0ef86fbfd4a471fcbabbcb29b7e242009f401a6b0aa92775\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x41802 [0,100 63743x41702] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3002235|Date = 08/22/13|Time = 14:04:43|Time Zone = GMT-04:00|User = 926ffdbd-034b-41ba-bde4-4a9641958e87|MPP = 0.4942|Left = 16.327196|Top = 23.452015|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 51419|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 41802|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
41702,
|
| 36 |
+
63743
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
48.73318042813456,
|
| 124 |
+
48.717289719626166
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
856,
|
| 187 |
+
1308
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
856,
|
| 204 |
+
1308
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
2151,
|
| 325 |
+
160
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
34408,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
17204
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
34408
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
34408
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
34408
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
17204
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
34408
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-139YR-1926.zarr/.zattrs
ADDED
|
@@ -0,0 +1,60 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
65735,
|
| 7 |
+
36802
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000199975394157,
|
| 12 |
+
16.001286778713855,
|
| 13 |
+
32.00257355742771
|
| 14 |
+
],
|
| 15 |
+
"level_shape": [
|
| 16 |
+
[
|
| 17 |
+
36802,
|
| 18 |
+
65735
|
| 19 |
+
],
|
| 20 |
+
[
|
| 21 |
+
9200,
|
| 22 |
+
16433
|
| 23 |
+
],
|
| 24 |
+
[
|
| 25 |
+
2300,
|
| 26 |
+
4108
|
| 27 |
+
],
|
| 28 |
+
[
|
| 29 |
+
1150,
|
| 30 |
+
2054
|
| 31 |
+
]
|
| 32 |
+
],
|
| 33 |
+
"magnification": 20.0,
|
| 34 |
+
"mpp": 0.4942,
|
| 35 |
+
"n_level": 4,
|
| 36 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/20/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003462\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"52645\", \"aperio.Left\": \"11.571976\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"36902\", \"aperio.OriginalWidth\": \"67056\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:50:58\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.725037\", \"aperio.User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"573\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"4\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"36802\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"65735\", \"openslide.level[1].downsample\": \"4.0001999753941568\", \"openslide.level[1].height\": \"9200\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"16433\", \"openslide.level[2].downsample\": \"16.001286778713855\", \"openslide.level[2].height\": \"2300\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"4108\", \"openslide.level[3].downsample\": \"32.002573557427709\", \"openslide.level[3].height\": \"1150\", \"openslide.level[3].tile-height\": \"240\", \"openslide.level[3].tile-width\": \"240\", \"openslide.level[3].width\": \"2054\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/20/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003462\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"52645\", \"Left\": \"11.571976\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"36902\", \"OriginalWidth\": \"67056\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:50:58\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.725037\", \"User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"573\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"4\", \"level[0].downsample\": \"1\", \"level[0].height\": \"36802\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"65735\", \"level[1].downsample\": \"4.0001999753941568\", \"level[1].height\": \"9200\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"16433\", \"level[2].downsample\": \"16.001286778713855\", \"level[2].height\": \"2300\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"4108\", \"level[3].downsample\": \"32.002573557427709\", \"level[3].height\": \"1150\", \"level[3].tile-height\": \"240\", \"level[3].tile-width\": \"240\", \"level[3].width\": \"2054\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 37 |
+
"shape": [
|
| 38 |
+
36802,
|
| 39 |
+
65735
|
| 40 |
+
]
|
| 41 |
+
},
|
| 42 |
+
"spatialdata_attrs": {
|
| 43 |
+
"spatialdata_software_version": "0.5.0",
|
| 44 |
+
"version": "0.1"
|
| 45 |
+
},
|
| 46 |
+
"tile_spec": {
|
| 47 |
+
"tiles": {
|
| 48 |
+
"base_downsample": 1.0,
|
| 49 |
+
"base_level": 0,
|
| 50 |
+
"height": 128,
|
| 51 |
+
"mpp": 0.4942,
|
| 52 |
+
"ops_downsample": 1.0,
|
| 53 |
+
"ops_level": 0,
|
| 54 |
+
"stride_height": 128,
|
| 55 |
+
"stride_width": 128,
|
| 56 |
+
"tissue_name": "tissues",
|
| 57 |
+
"width": 128
|
| 58 |
+
}
|
| 59 |
+
}
|
| 60 |
+
}
|
train/GTEX-139YR-1926.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-139YR-1926.zarr/zmetadata
ADDED
|
@@ -0,0 +1,631 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
65735,
|
| 9 |
+
36802
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000199975394157,
|
| 14 |
+
16.001286778713855,
|
| 15 |
+
32.00257355742771
|
| 16 |
+
],
|
| 17 |
+
"level_shape": [
|
| 18 |
+
[
|
| 19 |
+
36802,
|
| 20 |
+
65735
|
| 21 |
+
],
|
| 22 |
+
[
|
| 23 |
+
9200,
|
| 24 |
+
16433
|
| 25 |
+
],
|
| 26 |
+
[
|
| 27 |
+
2300,
|
| 28 |
+
4108
|
| 29 |
+
],
|
| 30 |
+
[
|
| 31 |
+
1150,
|
| 32 |
+
2054
|
| 33 |
+
]
|
| 34 |
+
],
|
| 35 |
+
"magnification": 20.0,
|
| 36 |
+
"mpp": 0.4942,
|
| 37 |
+
"n_level": 4,
|
| 38 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/20/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003462\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"52645\", \"aperio.Left\": \"11.571976\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"36902\", \"aperio.OriginalWidth\": \"67056\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"08:50:58\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.725037\", \"aperio.User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"573\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"4\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"36802\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"65735\", \"openslide.level[1].downsample\": \"4.0001999753941568\", \"openslide.level[1].height\": \"9200\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"16433\", \"openslide.level[2].downsample\": \"16.001286778713855\", \"openslide.level[2].height\": \"2300\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"4108\", \"openslide.level[3].downsample\": \"32.002573557427709\", \"openslide.level[3].height\": \"1150\", \"openslide.level[3].tile-height\": \"240\", \"openslide.level[3].tile-width\": \"240\", \"openslide.level[3].width\": \"2054\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/20/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003462\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"52645\", \"Left\": \"11.571976\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"36902\", \"OriginalWidth\": \"67056\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"08:50:58\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.725037\", \"User\": \"b9fc0454-1a75-4f69-8e7c-01af86a80d6a\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"573\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"4\", \"level[0].downsample\": \"1\", \"level[0].height\": \"36802\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"65735\", \"level[1].downsample\": \"4.0001999753941568\", \"level[1].height\": \"9200\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"16433\", \"level[2].downsample\": \"16.001286778713855\", \"level[2].height\": \"2300\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"4108\", \"level[3].downsample\": \"32.002573557427709\", \"level[3].height\": \"1150\", \"level[3].tile-height\": \"240\", \"level[3].tile-width\": \"240\", \"level[3].width\": \"2054\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"27a08c73ff2c60443a7ebc0be0dcfcbef85677fc11d5388360a7d511db5214a5\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n67056x36902 [0,100 65735x36802] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003462|Date = 09/20/13|Time = 08:50:58|Time Zone = GMT-04:00|User = b9fc0454-1a75-4f69-8e7c-01af86a80d6a|MPP = 0.4942|Left = 11.571976|Top = 20.725037|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 52645|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 67056|OriginalHeight = 36902|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 39 |
+
"shape": [
|
| 40 |
+
36802,
|
| 41 |
+
65735
|
| 42 |
+
]
|
| 43 |
+
},
|
| 44 |
+
"spatialdata_attrs": {
|
| 45 |
+
"spatialdata_software_version": "0.5.0",
|
| 46 |
+
"version": "0.1"
|
| 47 |
+
},
|
| 48 |
+
"tile_spec": {
|
| 49 |
+
"tiles": {
|
| 50 |
+
"base_downsample": 1.0,
|
| 51 |
+
"base_level": 0,
|
| 52 |
+
"height": 128,
|
| 53 |
+
"mpp": 0.4942,
|
| 54 |
+
"ops_downsample": 1.0,
|
| 55 |
+
"ops_level": 0,
|
| 56 |
+
"stride_height": 128,
|
| 57 |
+
"stride_width": 128,
|
| 58 |
+
"tissue_name": "tissues",
|
| 59 |
+
"width": 128
|
| 60 |
+
}
|
| 61 |
+
}
|
| 62 |
+
},
|
| 63 |
+
".zgroup": {
|
| 64 |
+
"zarr_format": 2
|
| 65 |
+
},
|
| 66 |
+
"images/.zgroup": {
|
| 67 |
+
"zarr_format": 2
|
| 68 |
+
},
|
| 69 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 70 |
+
"multiscales": [
|
| 71 |
+
{
|
| 72 |
+
"axes": [
|
| 73 |
+
{
|
| 74 |
+
"name": "c",
|
| 75 |
+
"type": "channel"
|
| 76 |
+
},
|
| 77 |
+
{
|
| 78 |
+
"name": "y",
|
| 79 |
+
"type": "space"
|
| 80 |
+
},
|
| 81 |
+
{
|
| 82 |
+
"name": "x",
|
| 83 |
+
"type": "space"
|
| 84 |
+
}
|
| 85 |
+
],
|
| 86 |
+
"coordinateTransformations": [
|
| 87 |
+
{
|
| 88 |
+
"input": {
|
| 89 |
+
"axes": [
|
| 90 |
+
{
|
| 91 |
+
"name": "c",
|
| 92 |
+
"type": "channel"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "y",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
},
|
| 99 |
+
{
|
| 100 |
+
"name": "x",
|
| 101 |
+
"type": "space",
|
| 102 |
+
"unit": "unit"
|
| 103 |
+
}
|
| 104 |
+
],
|
| 105 |
+
"name": "cyx"
|
| 106 |
+
},
|
| 107 |
+
"output": {
|
| 108 |
+
"axes": [
|
| 109 |
+
{
|
| 110 |
+
"name": "c",
|
| 111 |
+
"type": "channel"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "y",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
},
|
| 118 |
+
{
|
| 119 |
+
"name": "x",
|
| 120 |
+
"type": "space",
|
| 121 |
+
"unit": "unit"
|
| 122 |
+
}
|
| 123 |
+
],
|
| 124 |
+
"name": "global"
|
| 125 |
+
},
|
| 126 |
+
"scale": [
|
| 127 |
+
1.0,
|
| 128 |
+
58.744414655942805,
|
| 129 |
+
58.69537480063796
|
| 130 |
+
],
|
| 131 |
+
"type": "scale"
|
| 132 |
+
}
|
| 133 |
+
],
|
| 134 |
+
"datasets": [
|
| 135 |
+
{
|
| 136 |
+
"coordinateTransformations": [
|
| 137 |
+
{
|
| 138 |
+
"scale": [
|
| 139 |
+
1.0,
|
| 140 |
+
1.0,
|
| 141 |
+
1.0
|
| 142 |
+
],
|
| 143 |
+
"type": "scale"
|
| 144 |
+
}
|
| 145 |
+
],
|
| 146 |
+
"path": "0"
|
| 147 |
+
}
|
| 148 |
+
],
|
| 149 |
+
"metadata": {
|
| 150 |
+
"omero": {
|
| 151 |
+
"channels": [
|
| 152 |
+
{
|
| 153 |
+
"label": 0
|
| 154 |
+
},
|
| 155 |
+
{
|
| 156 |
+
"label": 1
|
| 157 |
+
},
|
| 158 |
+
{
|
| 159 |
+
"label": 2
|
| 160 |
+
}
|
| 161 |
+
]
|
| 162 |
+
}
|
| 163 |
+
},
|
| 164 |
+
"name": "/images/wsi_thumbnail",
|
| 165 |
+
"version": "0.4-dev-spatialdata"
|
| 166 |
+
}
|
| 167 |
+
],
|
| 168 |
+
"omero": {
|
| 169 |
+
"channels": [
|
| 170 |
+
{
|
| 171 |
+
"label": 0
|
| 172 |
+
},
|
| 173 |
+
{
|
| 174 |
+
"label": 1
|
| 175 |
+
},
|
| 176 |
+
{
|
| 177 |
+
"label": 2
|
| 178 |
+
}
|
| 179 |
+
]
|
| 180 |
+
},
|
| 181 |
+
"spatialdata_attrs": {
|
| 182 |
+
"version": "0.2"
|
| 183 |
+
}
|
| 184 |
+
},
|
| 185 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 186 |
+
"zarr_format": 2
|
| 187 |
+
},
|
| 188 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 189 |
+
"chunks": [
|
| 190 |
+
3,
|
| 191 |
+
627,
|
| 192 |
+
1119
|
| 193 |
+
],
|
| 194 |
+
"compressor": {
|
| 195 |
+
"blocksize": 0,
|
| 196 |
+
"clevel": 5,
|
| 197 |
+
"cname": "lz4",
|
| 198 |
+
"id": "blosc",
|
| 199 |
+
"shuffle": 1
|
| 200 |
+
},
|
| 201 |
+
"dimension_separator": "/",
|
| 202 |
+
"dtype": "|u1",
|
| 203 |
+
"fill_value": 0,
|
| 204 |
+
"filters": null,
|
| 205 |
+
"order": "C",
|
| 206 |
+
"shape": [
|
| 207 |
+
3,
|
| 208 |
+
627,
|
| 209 |
+
1119
|
| 210 |
+
],
|
| 211 |
+
"zarr_format": 2
|
| 212 |
+
},
|
| 213 |
+
"shapes/.zgroup": {
|
| 214 |
+
"zarr_format": 2
|
| 215 |
+
},
|
| 216 |
+
"shapes/tiles/.zattrs": {
|
| 217 |
+
"axes": [
|
| 218 |
+
"x",
|
| 219 |
+
"y"
|
| 220 |
+
],
|
| 221 |
+
"coordinateTransformations": [
|
| 222 |
+
{
|
| 223 |
+
"input": {
|
| 224 |
+
"axes": [
|
| 225 |
+
{
|
| 226 |
+
"name": "x",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
},
|
| 230 |
+
{
|
| 231 |
+
"name": "y",
|
| 232 |
+
"type": "space",
|
| 233 |
+
"unit": "unit"
|
| 234 |
+
}
|
| 235 |
+
],
|
| 236 |
+
"name": "xy"
|
| 237 |
+
},
|
| 238 |
+
"output": {
|
| 239 |
+
"axes": [
|
| 240 |
+
{
|
| 241 |
+
"name": "x",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
},
|
| 245 |
+
{
|
| 246 |
+
"name": "y",
|
| 247 |
+
"type": "space",
|
| 248 |
+
"unit": "unit"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"name": "global"
|
| 252 |
+
},
|
| 253 |
+
"type": "identity"
|
| 254 |
+
}
|
| 255 |
+
],
|
| 256 |
+
"encoding-type": "ngff:shapes",
|
| 257 |
+
"spatialdata_attrs": {
|
| 258 |
+
"version": "0.2"
|
| 259 |
+
}
|
| 260 |
+
},
|
| 261 |
+
"shapes/tiles/.zgroup": {
|
| 262 |
+
"zarr_format": 2
|
| 263 |
+
},
|
| 264 |
+
"shapes/tissues/.zattrs": {
|
| 265 |
+
"axes": [
|
| 266 |
+
"x",
|
| 267 |
+
"y"
|
| 268 |
+
],
|
| 269 |
+
"coordinateTransformations": [
|
| 270 |
+
{
|
| 271 |
+
"input": {
|
| 272 |
+
"axes": [
|
| 273 |
+
{
|
| 274 |
+
"name": "x",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
},
|
| 278 |
+
{
|
| 279 |
+
"name": "y",
|
| 280 |
+
"type": "space",
|
| 281 |
+
"unit": "unit"
|
| 282 |
+
}
|
| 283 |
+
],
|
| 284 |
+
"name": "xy"
|
| 285 |
+
},
|
| 286 |
+
"output": {
|
| 287 |
+
"axes": [
|
| 288 |
+
{
|
| 289 |
+
"name": "x",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
},
|
| 293 |
+
{
|
| 294 |
+
"name": "y",
|
| 295 |
+
"type": "space",
|
| 296 |
+
"unit": "unit"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"name": "global"
|
| 300 |
+
},
|
| 301 |
+
"type": "identity"
|
| 302 |
+
}
|
| 303 |
+
],
|
| 304 |
+
"encoding-type": "ngff:shapes",
|
| 305 |
+
"spatialdata_attrs": {
|
| 306 |
+
"version": "0.2"
|
| 307 |
+
}
|
| 308 |
+
},
|
| 309 |
+
"shapes/tissues/.zgroup": {
|
| 310 |
+
"zarr_format": 2
|
| 311 |
+
},
|
| 312 |
+
"tables/.zgroup": {
|
| 313 |
+
"zarr_format": 2
|
| 314 |
+
},
|
| 315 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 316 |
+
"encoding-type": "anndata",
|
| 317 |
+
"encoding-version": "0.1.0",
|
| 318 |
+
"instance_key": "tile_id",
|
| 319 |
+
"region": "tiles",
|
| 320 |
+
"region_key": "library_id",
|
| 321 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 322 |
+
"version": "0.1"
|
| 323 |
+
},
|
| 324 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 325 |
+
"zarr_format": 2
|
| 326 |
+
},
|
| 327 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 328 |
+
"chunks": [
|
| 329 |
+
1117,
|
| 330 |
+
320
|
| 331 |
+
],
|
| 332 |
+
"compressor": {
|
| 333 |
+
"blocksize": 0,
|
| 334 |
+
"clevel": 5,
|
| 335 |
+
"cname": "lz4",
|
| 336 |
+
"id": "blosc",
|
| 337 |
+
"shuffle": 1
|
| 338 |
+
},
|
| 339 |
+
"dimension_separator": "/",
|
| 340 |
+
"dtype": "<f4",
|
| 341 |
+
"fill_value": 0.0,
|
| 342 |
+
"filters": null,
|
| 343 |
+
"order": "C",
|
| 344 |
+
"shape": [
|
| 345 |
+
17861,
|
| 346 |
+
2560
|
| 347 |
+
],
|
| 348 |
+
"zarr_format": 2
|
| 349 |
+
},
|
| 350 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 351 |
+
"encoding-type": "array",
|
| 352 |
+
"encoding-version": "0.2.0"
|
| 353 |
+
},
|
| 354 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 355 |
+
"encoding-type": "dict",
|
| 356 |
+
"encoding-version": "0.1.0"
|
| 357 |
+
},
|
| 358 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 359 |
+
"zarr_format": 2
|
| 360 |
+
},
|
| 361 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 362 |
+
"_index": "_index",
|
| 363 |
+
"column-order": [
|
| 364 |
+
"tile_id",
|
| 365 |
+
"library_id"
|
| 366 |
+
],
|
| 367 |
+
"encoding-type": "dataframe",
|
| 368 |
+
"encoding-version": "0.2.0"
|
| 369 |
+
},
|
| 370 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 371 |
+
"zarr_format": 2
|
| 372 |
+
},
|
| 373 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 374 |
+
"chunks": [
|
| 375 |
+
17861
|
| 376 |
+
],
|
| 377 |
+
"compressor": {
|
| 378 |
+
"blocksize": 0,
|
| 379 |
+
"clevel": 5,
|
| 380 |
+
"cname": "lz4",
|
| 381 |
+
"id": "blosc",
|
| 382 |
+
"shuffle": 1
|
| 383 |
+
},
|
| 384 |
+
"dimension_separator": "/",
|
| 385 |
+
"dtype": "|O",
|
| 386 |
+
"fill_value": 0,
|
| 387 |
+
"filters": [
|
| 388 |
+
{
|
| 389 |
+
"id": "vlen-utf8"
|
| 390 |
+
}
|
| 391 |
+
],
|
| 392 |
+
"order": "C",
|
| 393 |
+
"shape": [
|
| 394 |
+
17861
|
| 395 |
+
],
|
| 396 |
+
"zarr_format": 2
|
| 397 |
+
},
|
| 398 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 399 |
+
"encoding-type": "string-array",
|
| 400 |
+
"encoding-version": "0.2.0"
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 403 |
+
"encoding-type": "categorical",
|
| 404 |
+
"encoding-version": "0.2.0",
|
| 405 |
+
"ordered": false
|
| 406 |
+
},
|
| 407 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 408 |
+
"zarr_format": 2
|
| 409 |
+
},
|
| 410 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 411 |
+
"chunks": [
|
| 412 |
+
1
|
| 413 |
+
],
|
| 414 |
+
"compressor": {
|
| 415 |
+
"blocksize": 0,
|
| 416 |
+
"clevel": 5,
|
| 417 |
+
"cname": "lz4",
|
| 418 |
+
"id": "blosc",
|
| 419 |
+
"shuffle": 1
|
| 420 |
+
},
|
| 421 |
+
"dimension_separator": "/",
|
| 422 |
+
"dtype": "|O",
|
| 423 |
+
"fill_value": 0,
|
| 424 |
+
"filters": [
|
| 425 |
+
{
|
| 426 |
+
"id": "vlen-utf8"
|
| 427 |
+
}
|
| 428 |
+
],
|
| 429 |
+
"order": "C",
|
| 430 |
+
"shape": [
|
| 431 |
+
1
|
| 432 |
+
],
|
| 433 |
+
"zarr_format": 2
|
| 434 |
+
},
|
| 435 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 436 |
+
"encoding-type": "string-array",
|
| 437 |
+
"encoding-version": "0.2.0"
|
| 438 |
+
},
|
| 439 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 440 |
+
"chunks": [
|
| 441 |
+
17861
|
| 442 |
+
],
|
| 443 |
+
"compressor": {
|
| 444 |
+
"blocksize": 0,
|
| 445 |
+
"clevel": 5,
|
| 446 |
+
"cname": "lz4",
|
| 447 |
+
"id": "blosc",
|
| 448 |
+
"shuffle": 1
|
| 449 |
+
},
|
| 450 |
+
"dimension_separator": "/",
|
| 451 |
+
"dtype": "|i1",
|
| 452 |
+
"fill_value": 0,
|
| 453 |
+
"filters": null,
|
| 454 |
+
"order": "C",
|
| 455 |
+
"shape": [
|
| 456 |
+
17861
|
| 457 |
+
],
|
| 458 |
+
"zarr_format": 2
|
| 459 |
+
},
|
| 460 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 461 |
+
"encoding-type": "array",
|
| 462 |
+
"encoding-version": "0.2.0"
|
| 463 |
+
},
|
| 464 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 465 |
+
"chunks": [
|
| 466 |
+
17861
|
| 467 |
+
],
|
| 468 |
+
"compressor": {
|
| 469 |
+
"blocksize": 0,
|
| 470 |
+
"clevel": 5,
|
| 471 |
+
"cname": "lz4",
|
| 472 |
+
"id": "blosc",
|
| 473 |
+
"shuffle": 1
|
| 474 |
+
},
|
| 475 |
+
"dimension_separator": "/",
|
| 476 |
+
"dtype": "<i8",
|
| 477 |
+
"fill_value": 0,
|
| 478 |
+
"filters": null,
|
| 479 |
+
"order": "C",
|
| 480 |
+
"shape": [
|
| 481 |
+
17861
|
| 482 |
+
],
|
| 483 |
+
"zarr_format": 2
|
| 484 |
+
},
|
| 485 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 486 |
+
"encoding-type": "array",
|
| 487 |
+
"encoding-version": "0.2.0"
|
| 488 |
+
},
|
| 489 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 490 |
+
"encoding-type": "dict",
|
| 491 |
+
"encoding-version": "0.1.0"
|
| 492 |
+
},
|
| 493 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 494 |
+
"zarr_format": 2
|
| 495 |
+
},
|
| 496 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 497 |
+
"encoding-type": "dict",
|
| 498 |
+
"encoding-version": "0.1.0"
|
| 499 |
+
},
|
| 500 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 501 |
+
"zarr_format": 2
|
| 502 |
+
},
|
| 503 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 504 |
+
"chunks": [],
|
| 505 |
+
"compressor": null,
|
| 506 |
+
"dimension_separator": "/",
|
| 507 |
+
"dtype": "<f8",
|
| 508 |
+
"fill_value": 0.0,
|
| 509 |
+
"filters": null,
|
| 510 |
+
"order": "C",
|
| 511 |
+
"shape": [],
|
| 512 |
+
"zarr_format": 2
|
| 513 |
+
},
|
| 514 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 515 |
+
"encoding-type": "null",
|
| 516 |
+
"encoding-version": "0.1.0"
|
| 517 |
+
},
|
| 518 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 519 |
+
"encoding-type": "dict",
|
| 520 |
+
"encoding-version": "0.1.0"
|
| 521 |
+
},
|
| 522 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 523 |
+
"zarr_format": 2
|
| 524 |
+
},
|
| 525 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 526 |
+
"encoding-type": "dict",
|
| 527 |
+
"encoding-version": "0.1.0"
|
| 528 |
+
},
|
| 529 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 530 |
+
"zarr_format": 2
|
| 531 |
+
},
|
| 532 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 533 |
+
"chunks": [],
|
| 534 |
+
"compressor": null,
|
| 535 |
+
"dimension_separator": "/",
|
| 536 |
+
"dtype": "<U7",
|
| 537 |
+
"fill_value": "",
|
| 538 |
+
"filters": null,
|
| 539 |
+
"order": "C",
|
| 540 |
+
"shape": [],
|
| 541 |
+
"zarr_format": 2
|
| 542 |
+
},
|
| 543 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 544 |
+
"encoding-type": "string",
|
| 545 |
+
"encoding-version": "0.2.0"
|
| 546 |
+
},
|
| 547 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 548 |
+
"chunks": [],
|
| 549 |
+
"compressor": null,
|
| 550 |
+
"dimension_separator": "/",
|
| 551 |
+
"dtype": "<U5",
|
| 552 |
+
"fill_value": "",
|
| 553 |
+
"filters": null,
|
| 554 |
+
"order": "C",
|
| 555 |
+
"shape": [],
|
| 556 |
+
"zarr_format": 2
|
| 557 |
+
},
|
| 558 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 559 |
+
"encoding-type": "string",
|
| 560 |
+
"encoding-version": "0.2.0"
|
| 561 |
+
},
|
| 562 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 563 |
+
"chunks": [],
|
| 564 |
+
"compressor": null,
|
| 565 |
+
"dimension_separator": "/",
|
| 566 |
+
"dtype": "<U10",
|
| 567 |
+
"fill_value": "",
|
| 568 |
+
"filters": null,
|
| 569 |
+
"order": "C",
|
| 570 |
+
"shape": [],
|
| 571 |
+
"zarr_format": 2
|
| 572 |
+
},
|
| 573 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 574 |
+
"encoding-type": "string",
|
| 575 |
+
"encoding-version": "0.2.0"
|
| 576 |
+
},
|
| 577 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 578 |
+
"_index": "_index",
|
| 579 |
+
"column-order": [],
|
| 580 |
+
"encoding-type": "dataframe",
|
| 581 |
+
"encoding-version": "0.2.0"
|
| 582 |
+
},
|
| 583 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 584 |
+
"zarr_format": 2
|
| 585 |
+
},
|
| 586 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 587 |
+
"chunks": [
|
| 588 |
+
2560
|
| 589 |
+
],
|
| 590 |
+
"compressor": {
|
| 591 |
+
"blocksize": 0,
|
| 592 |
+
"clevel": 5,
|
| 593 |
+
"cname": "lz4",
|
| 594 |
+
"id": "blosc",
|
| 595 |
+
"shuffle": 1
|
| 596 |
+
},
|
| 597 |
+
"dimension_separator": "/",
|
| 598 |
+
"dtype": "|O",
|
| 599 |
+
"fill_value": 0,
|
| 600 |
+
"filters": [
|
| 601 |
+
{
|
| 602 |
+
"id": "vlen-utf8"
|
| 603 |
+
}
|
| 604 |
+
],
|
| 605 |
+
"order": "C",
|
| 606 |
+
"shape": [
|
| 607 |
+
2560
|
| 608 |
+
],
|
| 609 |
+
"zarr_format": 2
|
| 610 |
+
},
|
| 611 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 612 |
+
"encoding-type": "string-array",
|
| 613 |
+
"encoding-version": "0.2.0"
|
| 614 |
+
},
|
| 615 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 616 |
+
"encoding-type": "dict",
|
| 617 |
+
"encoding-version": "0.1.0"
|
| 618 |
+
},
|
| 619 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 620 |
+
"zarr_format": 2
|
| 621 |
+
},
|
| 622 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 623 |
+
"encoding-type": "dict",
|
| 624 |
+
"encoding-version": "0.1.0"
|
| 625 |
+
},
|
| 626 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 627 |
+
"zarr_format": 2
|
| 628 |
+
}
|
| 629 |
+
},
|
| 630 |
+
"zarr_consolidated_format": 1
|
| 631 |
+
}
|
train/GTEX-13CZV-2426.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
63743,
|
| 7 |
+
40458
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000193005262443,
|
| 12 |
+
16.003860850863003
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
40458,
|
| 17 |
+
63743
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
10114,
|
| 21 |
+
15935
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2528,
|
| 25 |
+
3983
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/26/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003631\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53038\", \"aperio.Left\": \"16.004028\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"40558\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"15:23:42\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.874701\", \"aperio.User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"649\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"40458\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001930052624433\", \"openslide.level[1].height\": \"10114\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003860850863003\", \"openslide.level[2].height\": \"2528\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/26/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003631\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53038\", \"Left\": \"16.004028\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"40558\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"15:23:42\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.874701\", \"User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"649\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"40458\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001930052624433\", \"level[1].height\": \"10114\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003860850863003\", \"level[2].height\": \"2528\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
40458,
|
| 34 |
+
63743
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-13CZV-2426.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13CZV-2426.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
63743,
|
| 9 |
+
40458
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000193005262443,
|
| 14 |
+
16.003860850863003
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
40458,
|
| 19 |
+
63743
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
10114,
|
| 23 |
+
15935
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2528,
|
| 27 |
+
3983
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"09/26/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3003631\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53038\", \"aperio.Left\": \"16.004028\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"40558\", \"aperio.OriginalWidth\": \"65024\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"15:23:42\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"20.874701\", \"aperio.User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"649\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"40458\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"63743\", \"openslide.level[1].downsample\": \"4.0001930052624433\", \"openslide.level[1].height\": \"10114\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"15935\", \"openslide.level[2].downsample\": \"16.003860850863003\", \"openslide.level[2].height\": \"2528\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3983\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"09/26/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3003631\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53038\", \"Left\": \"16.004028\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"40558\", \"OriginalWidth\": \"65024\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"15:23:42\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"20.874701\", \"User\": \"a53d7f62-43ac-4e65-8034-4fd2a8672e53\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"649\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"40458\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"63743\", \"level[1].downsample\": \"4.0001930052624433\", \"level[1].height\": \"10114\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"15935\", \"level[2].downsample\": \"16.003860850863003\", \"level[2].height\": \"2528\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3983\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"151e74013bfaf40df03577f9d293ac7087ac369842f970eb4e5d8755c2e3929d\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n65024x40558 [0,100 63743x40458] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3003631|Date = 09/26/13|Time = 15:23:42|Time Zone = GMT-04:00|User = a53d7f62-43ac-4e65-8034-4fd2a8672e53|MPP = 0.4942|Left = 16.004028|Top = 20.874701|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53038|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 65024|OriginalHeight = 40558|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
40458,
|
| 36 |
+
63743
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
50.23089046493302,
|
| 124 |
+
50.2583850931677
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
805,
|
| 187 |
+
1269
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
805,
|
| 204 |
+
1269
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
1671,
|
| 325 |
+
160
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
26727,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
26727
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
26727
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
26727
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
26727
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
26727
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
26727
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-13N1W-2026.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
57767,
|
| 7 |
+
43310
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000196232611438,
|
| 12 |
+
16.00355637313613
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
43310,
|
| 17 |
+
57767
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
10827,
|
| 21 |
+
14441
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2706,
|
| 25 |
+
3610
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/10/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004201\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53628\", \"aperio.Left\": \"16.977787\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"43410\", \"aperio.OriginalWidth\": \"58928\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:29:38\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.455982\", \"aperio.User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"767\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"43310\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"57767\", \"openslide.level[1].downsample\": \"4.0001962326114384\", \"openslide.level[1].height\": \"10827\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"14441\", \"openslide.level[2].downsample\": \"16.003556373136131\", \"openslide.level[2].height\": \"2706\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3610\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/10/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004201\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53628\", \"Left\": \"16.977787\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"43410\", \"OriginalWidth\": \"58928\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:29:38\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.455982\", \"User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"767\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"43310\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"57767\", \"level[1].downsample\": \"4.0001962326114384\", \"level[1].height\": \"10827\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"14441\", \"level[2].downsample\": \"16.003556373136131\", \"level[2].height\": \"2706\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3610\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
43310,
|
| 34 |
+
57767
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-13N1W-2026.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13N1W-2026.zarr/zmetadata
ADDED
|
@@ -0,0 +1,626 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"metadata": {
|
| 3 |
+
".zattrs": {
|
| 4 |
+
"slide_properties": {
|
| 5 |
+
"bounds": [
|
| 6 |
+
0,
|
| 7 |
+
0,
|
| 8 |
+
57767,
|
| 9 |
+
43310
|
| 10 |
+
],
|
| 11 |
+
"level_downsample": [
|
| 12 |
+
1.0,
|
| 13 |
+
4.000196232611438,
|
| 14 |
+
16.00355637313613
|
| 15 |
+
],
|
| 16 |
+
"level_shape": [
|
| 17 |
+
[
|
| 18 |
+
43310,
|
| 19 |
+
57767
|
| 20 |
+
],
|
| 21 |
+
[
|
| 22 |
+
10827,
|
| 23 |
+
14441
|
| 24 |
+
],
|
| 25 |
+
[
|
| 26 |
+
2706,
|
| 27 |
+
3610
|
| 28 |
+
]
|
| 29 |
+
],
|
| 30 |
+
"magnification": 20.0,
|
| 31 |
+
"mpp": 0.4942,
|
| 32 |
+
"n_level": 3,
|
| 33 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/10/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004201\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53628\", \"aperio.Left\": \"16.977787\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"43410\", \"aperio.OriginalWidth\": \"58928\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"11:29:38\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"23.455982\", \"aperio.User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"767\", \"openslide.associated.thumbnail.width\": \"1024\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"43310\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"57767\", \"openslide.level[1].downsample\": \"4.0001962326114384\", \"openslide.level[1].height\": \"10827\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"14441\", \"openslide.level[2].downsample\": \"16.003556373136131\", \"openslide.level[2].height\": \"2706\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3610\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/10/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004201\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53628\", \"Left\": \"16.977787\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"43410\", \"OriginalWidth\": \"58928\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"11:29:38\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"23.455982\", \"User\": \"d23c9caf-efd1-4064-a12e-020215bf51b1\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"767\", \"associated.thumbnail.width\": \"1024\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"43310\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"57767\", \"level[1].downsample\": \"4.0001962326114384\", \"level[1].height\": \"10827\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"14441\", \"level[2].downsample\": \"16.003556373136131\", \"level[2].height\": \"2706\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3610\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"f73b47053508c77df9a41ff8b54ba1ab5ea8692ae19edc410c00e315d049e1f0\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n58928x43410 [0,100 57767x43310] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004201|Date = 10/10/13|Time = 11:29:38|Time Zone = GMT-04:00|User = d23c9caf-efd1-4064-a12e-020215bf51b1|MPP = 0.4942|Left = 16.977787|Top = 23.455982|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53628|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 58928|OriginalHeight = 43410|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 34 |
+
"shape": [
|
| 35 |
+
43310,
|
| 36 |
+
57767
|
| 37 |
+
]
|
| 38 |
+
},
|
| 39 |
+
"spatialdata_attrs": {
|
| 40 |
+
"spatialdata_software_version": "0.5.0",
|
| 41 |
+
"version": "0.1"
|
| 42 |
+
},
|
| 43 |
+
"tile_spec": {
|
| 44 |
+
"tiles": {
|
| 45 |
+
"base_downsample": 1.0,
|
| 46 |
+
"base_level": 0,
|
| 47 |
+
"height": 128,
|
| 48 |
+
"mpp": 0.4942,
|
| 49 |
+
"ops_downsample": 1.0,
|
| 50 |
+
"ops_level": 0,
|
| 51 |
+
"stride_height": 128,
|
| 52 |
+
"stride_width": 128,
|
| 53 |
+
"tissue_name": "tissues",
|
| 54 |
+
"width": 128
|
| 55 |
+
}
|
| 56 |
+
}
|
| 57 |
+
},
|
| 58 |
+
".zgroup": {
|
| 59 |
+
"zarr_format": 2
|
| 60 |
+
},
|
| 61 |
+
"images/.zgroup": {
|
| 62 |
+
"zarr_format": 2
|
| 63 |
+
},
|
| 64 |
+
"images/wsi_thumbnail/.zattrs": {
|
| 65 |
+
"multiscales": [
|
| 66 |
+
{
|
| 67 |
+
"axes": [
|
| 68 |
+
{
|
| 69 |
+
"name": "c",
|
| 70 |
+
"type": "channel"
|
| 71 |
+
},
|
| 72 |
+
{
|
| 73 |
+
"name": "y",
|
| 74 |
+
"type": "space"
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"name": "x",
|
| 78 |
+
"type": "space"
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
"coordinateTransformations": [
|
| 82 |
+
{
|
| 83 |
+
"input": {
|
| 84 |
+
"axes": [
|
| 85 |
+
{
|
| 86 |
+
"name": "c",
|
| 87 |
+
"type": "channel"
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"name": "y",
|
| 91 |
+
"type": "space",
|
| 92 |
+
"unit": "unit"
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"name": "x",
|
| 96 |
+
"type": "space",
|
| 97 |
+
"unit": "unit"
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"name": "cyx"
|
| 101 |
+
},
|
| 102 |
+
"output": {
|
| 103 |
+
"axes": [
|
| 104 |
+
{
|
| 105 |
+
"name": "c",
|
| 106 |
+
"type": "channel"
|
| 107 |
+
},
|
| 108 |
+
{
|
| 109 |
+
"name": "y",
|
| 110 |
+
"type": "space",
|
| 111 |
+
"unit": "unit"
|
| 112 |
+
},
|
| 113 |
+
{
|
| 114 |
+
"name": "x",
|
| 115 |
+
"type": "space",
|
| 116 |
+
"unit": "unit"
|
| 117 |
+
}
|
| 118 |
+
],
|
| 119 |
+
"name": "global"
|
| 120 |
+
},
|
| 121 |
+
"scale": [
|
| 122 |
+
1.0,
|
| 123 |
+
38.537024683122084,
|
| 124 |
+
38.53202846975089
|
| 125 |
+
],
|
| 126 |
+
"type": "scale"
|
| 127 |
+
}
|
| 128 |
+
],
|
| 129 |
+
"datasets": [
|
| 130 |
+
{
|
| 131 |
+
"coordinateTransformations": [
|
| 132 |
+
{
|
| 133 |
+
"scale": [
|
| 134 |
+
1.0,
|
| 135 |
+
1.0,
|
| 136 |
+
1.0
|
| 137 |
+
],
|
| 138 |
+
"type": "scale"
|
| 139 |
+
}
|
| 140 |
+
],
|
| 141 |
+
"path": "0"
|
| 142 |
+
}
|
| 143 |
+
],
|
| 144 |
+
"metadata": {
|
| 145 |
+
"omero": {
|
| 146 |
+
"channels": [
|
| 147 |
+
{
|
| 148 |
+
"label": 0
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"label": 1
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"label": 2
|
| 155 |
+
}
|
| 156 |
+
]
|
| 157 |
+
}
|
| 158 |
+
},
|
| 159 |
+
"name": "/images/wsi_thumbnail",
|
| 160 |
+
"version": "0.4-dev-spatialdata"
|
| 161 |
+
}
|
| 162 |
+
],
|
| 163 |
+
"omero": {
|
| 164 |
+
"channels": [
|
| 165 |
+
{
|
| 166 |
+
"label": 0
|
| 167 |
+
},
|
| 168 |
+
{
|
| 169 |
+
"label": 1
|
| 170 |
+
},
|
| 171 |
+
{
|
| 172 |
+
"label": 2
|
| 173 |
+
}
|
| 174 |
+
]
|
| 175 |
+
},
|
| 176 |
+
"spatialdata_attrs": {
|
| 177 |
+
"version": "0.2"
|
| 178 |
+
}
|
| 179 |
+
},
|
| 180 |
+
"images/wsi_thumbnail/.zgroup": {
|
| 181 |
+
"zarr_format": 2
|
| 182 |
+
},
|
| 183 |
+
"images/wsi_thumbnail/0/.zarray": {
|
| 184 |
+
"chunks": [
|
| 185 |
+
3,
|
| 186 |
+
1124,
|
| 187 |
+
1499
|
| 188 |
+
],
|
| 189 |
+
"compressor": {
|
| 190 |
+
"blocksize": 0,
|
| 191 |
+
"clevel": 5,
|
| 192 |
+
"cname": "lz4",
|
| 193 |
+
"id": "blosc",
|
| 194 |
+
"shuffle": 1
|
| 195 |
+
},
|
| 196 |
+
"dimension_separator": "/",
|
| 197 |
+
"dtype": "|u1",
|
| 198 |
+
"fill_value": 0,
|
| 199 |
+
"filters": null,
|
| 200 |
+
"order": "C",
|
| 201 |
+
"shape": [
|
| 202 |
+
3,
|
| 203 |
+
1124,
|
| 204 |
+
1499
|
| 205 |
+
],
|
| 206 |
+
"zarr_format": 2
|
| 207 |
+
},
|
| 208 |
+
"shapes/.zgroup": {
|
| 209 |
+
"zarr_format": 2
|
| 210 |
+
},
|
| 211 |
+
"shapes/tiles/.zattrs": {
|
| 212 |
+
"axes": [
|
| 213 |
+
"x",
|
| 214 |
+
"y"
|
| 215 |
+
],
|
| 216 |
+
"coordinateTransformations": [
|
| 217 |
+
{
|
| 218 |
+
"input": {
|
| 219 |
+
"axes": [
|
| 220 |
+
{
|
| 221 |
+
"name": "x",
|
| 222 |
+
"type": "space",
|
| 223 |
+
"unit": "unit"
|
| 224 |
+
},
|
| 225 |
+
{
|
| 226 |
+
"name": "y",
|
| 227 |
+
"type": "space",
|
| 228 |
+
"unit": "unit"
|
| 229 |
+
}
|
| 230 |
+
],
|
| 231 |
+
"name": "xy"
|
| 232 |
+
},
|
| 233 |
+
"output": {
|
| 234 |
+
"axes": [
|
| 235 |
+
{
|
| 236 |
+
"name": "x",
|
| 237 |
+
"type": "space",
|
| 238 |
+
"unit": "unit"
|
| 239 |
+
},
|
| 240 |
+
{
|
| 241 |
+
"name": "y",
|
| 242 |
+
"type": "space",
|
| 243 |
+
"unit": "unit"
|
| 244 |
+
}
|
| 245 |
+
],
|
| 246 |
+
"name": "global"
|
| 247 |
+
},
|
| 248 |
+
"type": "identity"
|
| 249 |
+
}
|
| 250 |
+
],
|
| 251 |
+
"encoding-type": "ngff:shapes",
|
| 252 |
+
"spatialdata_attrs": {
|
| 253 |
+
"version": "0.2"
|
| 254 |
+
}
|
| 255 |
+
},
|
| 256 |
+
"shapes/tiles/.zgroup": {
|
| 257 |
+
"zarr_format": 2
|
| 258 |
+
},
|
| 259 |
+
"shapes/tissues/.zattrs": {
|
| 260 |
+
"axes": [
|
| 261 |
+
"x",
|
| 262 |
+
"y"
|
| 263 |
+
],
|
| 264 |
+
"coordinateTransformations": [
|
| 265 |
+
{
|
| 266 |
+
"input": {
|
| 267 |
+
"axes": [
|
| 268 |
+
{
|
| 269 |
+
"name": "x",
|
| 270 |
+
"type": "space",
|
| 271 |
+
"unit": "unit"
|
| 272 |
+
},
|
| 273 |
+
{
|
| 274 |
+
"name": "y",
|
| 275 |
+
"type": "space",
|
| 276 |
+
"unit": "unit"
|
| 277 |
+
}
|
| 278 |
+
],
|
| 279 |
+
"name": "xy"
|
| 280 |
+
},
|
| 281 |
+
"output": {
|
| 282 |
+
"axes": [
|
| 283 |
+
{
|
| 284 |
+
"name": "x",
|
| 285 |
+
"type": "space",
|
| 286 |
+
"unit": "unit"
|
| 287 |
+
},
|
| 288 |
+
{
|
| 289 |
+
"name": "y",
|
| 290 |
+
"type": "space",
|
| 291 |
+
"unit": "unit"
|
| 292 |
+
}
|
| 293 |
+
],
|
| 294 |
+
"name": "global"
|
| 295 |
+
},
|
| 296 |
+
"type": "identity"
|
| 297 |
+
}
|
| 298 |
+
],
|
| 299 |
+
"encoding-type": "ngff:shapes",
|
| 300 |
+
"spatialdata_attrs": {
|
| 301 |
+
"version": "0.2"
|
| 302 |
+
}
|
| 303 |
+
},
|
| 304 |
+
"shapes/tissues/.zgroup": {
|
| 305 |
+
"zarr_format": 2
|
| 306 |
+
},
|
| 307 |
+
"tables/.zgroup": {
|
| 308 |
+
"zarr_format": 2
|
| 309 |
+
},
|
| 310 |
+
"tables/virchow2_tiles/.zattrs": {
|
| 311 |
+
"encoding-type": "anndata",
|
| 312 |
+
"encoding-version": "0.1.0",
|
| 313 |
+
"instance_key": "tile_id",
|
| 314 |
+
"region": "tiles",
|
| 315 |
+
"region_key": "library_id",
|
| 316 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 317 |
+
"version": "0.1"
|
| 318 |
+
},
|
| 319 |
+
"tables/virchow2_tiles/.zgroup": {
|
| 320 |
+
"zarr_format": 2
|
| 321 |
+
},
|
| 322 |
+
"tables/virchow2_tiles/X/.zarray": {
|
| 323 |
+
"chunks": [
|
| 324 |
+
1861,
|
| 325 |
+
160
|
| 326 |
+
],
|
| 327 |
+
"compressor": {
|
| 328 |
+
"blocksize": 0,
|
| 329 |
+
"clevel": 5,
|
| 330 |
+
"cname": "lz4",
|
| 331 |
+
"id": "blosc",
|
| 332 |
+
"shuffle": 1
|
| 333 |
+
},
|
| 334 |
+
"dimension_separator": "/",
|
| 335 |
+
"dtype": "<f4",
|
| 336 |
+
"fill_value": 0.0,
|
| 337 |
+
"filters": null,
|
| 338 |
+
"order": "C",
|
| 339 |
+
"shape": [
|
| 340 |
+
29768,
|
| 341 |
+
2560
|
| 342 |
+
],
|
| 343 |
+
"zarr_format": 2
|
| 344 |
+
},
|
| 345 |
+
"tables/virchow2_tiles/X/.zattrs": {
|
| 346 |
+
"encoding-type": "array",
|
| 347 |
+
"encoding-version": "0.2.0"
|
| 348 |
+
},
|
| 349 |
+
"tables/virchow2_tiles/layers/.zattrs": {
|
| 350 |
+
"encoding-type": "dict",
|
| 351 |
+
"encoding-version": "0.1.0"
|
| 352 |
+
},
|
| 353 |
+
"tables/virchow2_tiles/layers/.zgroup": {
|
| 354 |
+
"zarr_format": 2
|
| 355 |
+
},
|
| 356 |
+
"tables/virchow2_tiles/obs/.zattrs": {
|
| 357 |
+
"_index": "_index",
|
| 358 |
+
"column-order": [
|
| 359 |
+
"tile_id",
|
| 360 |
+
"library_id"
|
| 361 |
+
],
|
| 362 |
+
"encoding-type": "dataframe",
|
| 363 |
+
"encoding-version": "0.2.0"
|
| 364 |
+
},
|
| 365 |
+
"tables/virchow2_tiles/obs/.zgroup": {
|
| 366 |
+
"zarr_format": 2
|
| 367 |
+
},
|
| 368 |
+
"tables/virchow2_tiles/obs/_index/.zarray": {
|
| 369 |
+
"chunks": [
|
| 370 |
+
29768
|
| 371 |
+
],
|
| 372 |
+
"compressor": {
|
| 373 |
+
"blocksize": 0,
|
| 374 |
+
"clevel": 5,
|
| 375 |
+
"cname": "lz4",
|
| 376 |
+
"id": "blosc",
|
| 377 |
+
"shuffle": 1
|
| 378 |
+
},
|
| 379 |
+
"dimension_separator": "/",
|
| 380 |
+
"dtype": "|O",
|
| 381 |
+
"fill_value": 0,
|
| 382 |
+
"filters": [
|
| 383 |
+
{
|
| 384 |
+
"id": "vlen-utf8"
|
| 385 |
+
}
|
| 386 |
+
],
|
| 387 |
+
"order": "C",
|
| 388 |
+
"shape": [
|
| 389 |
+
29768
|
| 390 |
+
],
|
| 391 |
+
"zarr_format": 2
|
| 392 |
+
},
|
| 393 |
+
"tables/virchow2_tiles/obs/_index/.zattrs": {
|
| 394 |
+
"encoding-type": "string-array",
|
| 395 |
+
"encoding-version": "0.2.0"
|
| 396 |
+
},
|
| 397 |
+
"tables/virchow2_tiles/obs/library_id/.zattrs": {
|
| 398 |
+
"encoding-type": "categorical",
|
| 399 |
+
"encoding-version": "0.2.0",
|
| 400 |
+
"ordered": false
|
| 401 |
+
},
|
| 402 |
+
"tables/virchow2_tiles/obs/library_id/.zgroup": {
|
| 403 |
+
"zarr_format": 2
|
| 404 |
+
},
|
| 405 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zarray": {
|
| 406 |
+
"chunks": [
|
| 407 |
+
1
|
| 408 |
+
],
|
| 409 |
+
"compressor": {
|
| 410 |
+
"blocksize": 0,
|
| 411 |
+
"clevel": 5,
|
| 412 |
+
"cname": "lz4",
|
| 413 |
+
"id": "blosc",
|
| 414 |
+
"shuffle": 1
|
| 415 |
+
},
|
| 416 |
+
"dimension_separator": "/",
|
| 417 |
+
"dtype": "|O",
|
| 418 |
+
"fill_value": 0,
|
| 419 |
+
"filters": [
|
| 420 |
+
{
|
| 421 |
+
"id": "vlen-utf8"
|
| 422 |
+
}
|
| 423 |
+
],
|
| 424 |
+
"order": "C",
|
| 425 |
+
"shape": [
|
| 426 |
+
1
|
| 427 |
+
],
|
| 428 |
+
"zarr_format": 2
|
| 429 |
+
},
|
| 430 |
+
"tables/virchow2_tiles/obs/library_id/categories/.zattrs": {
|
| 431 |
+
"encoding-type": "string-array",
|
| 432 |
+
"encoding-version": "0.2.0"
|
| 433 |
+
},
|
| 434 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zarray": {
|
| 435 |
+
"chunks": [
|
| 436 |
+
29768
|
| 437 |
+
],
|
| 438 |
+
"compressor": {
|
| 439 |
+
"blocksize": 0,
|
| 440 |
+
"clevel": 5,
|
| 441 |
+
"cname": "lz4",
|
| 442 |
+
"id": "blosc",
|
| 443 |
+
"shuffle": 1
|
| 444 |
+
},
|
| 445 |
+
"dimension_separator": "/",
|
| 446 |
+
"dtype": "|i1",
|
| 447 |
+
"fill_value": 0,
|
| 448 |
+
"filters": null,
|
| 449 |
+
"order": "C",
|
| 450 |
+
"shape": [
|
| 451 |
+
29768
|
| 452 |
+
],
|
| 453 |
+
"zarr_format": 2
|
| 454 |
+
},
|
| 455 |
+
"tables/virchow2_tiles/obs/library_id/codes/.zattrs": {
|
| 456 |
+
"encoding-type": "array",
|
| 457 |
+
"encoding-version": "0.2.0"
|
| 458 |
+
},
|
| 459 |
+
"tables/virchow2_tiles/obs/tile_id/.zarray": {
|
| 460 |
+
"chunks": [
|
| 461 |
+
29768
|
| 462 |
+
],
|
| 463 |
+
"compressor": {
|
| 464 |
+
"blocksize": 0,
|
| 465 |
+
"clevel": 5,
|
| 466 |
+
"cname": "lz4",
|
| 467 |
+
"id": "blosc",
|
| 468 |
+
"shuffle": 1
|
| 469 |
+
},
|
| 470 |
+
"dimension_separator": "/",
|
| 471 |
+
"dtype": "<i8",
|
| 472 |
+
"fill_value": 0,
|
| 473 |
+
"filters": null,
|
| 474 |
+
"order": "C",
|
| 475 |
+
"shape": [
|
| 476 |
+
29768
|
| 477 |
+
],
|
| 478 |
+
"zarr_format": 2
|
| 479 |
+
},
|
| 480 |
+
"tables/virchow2_tiles/obs/tile_id/.zattrs": {
|
| 481 |
+
"encoding-type": "array",
|
| 482 |
+
"encoding-version": "0.2.0"
|
| 483 |
+
},
|
| 484 |
+
"tables/virchow2_tiles/obsm/.zattrs": {
|
| 485 |
+
"encoding-type": "dict",
|
| 486 |
+
"encoding-version": "0.1.0"
|
| 487 |
+
},
|
| 488 |
+
"tables/virchow2_tiles/obsm/.zgroup": {
|
| 489 |
+
"zarr_format": 2
|
| 490 |
+
},
|
| 491 |
+
"tables/virchow2_tiles/obsp/.zattrs": {
|
| 492 |
+
"encoding-type": "dict",
|
| 493 |
+
"encoding-version": "0.1.0"
|
| 494 |
+
},
|
| 495 |
+
"tables/virchow2_tiles/obsp/.zgroup": {
|
| 496 |
+
"zarr_format": 2
|
| 497 |
+
},
|
| 498 |
+
"tables/virchow2_tiles/raw/.zarray": {
|
| 499 |
+
"chunks": [],
|
| 500 |
+
"compressor": null,
|
| 501 |
+
"dimension_separator": "/",
|
| 502 |
+
"dtype": "<f8",
|
| 503 |
+
"fill_value": 0.0,
|
| 504 |
+
"filters": null,
|
| 505 |
+
"order": "C",
|
| 506 |
+
"shape": [],
|
| 507 |
+
"zarr_format": 2
|
| 508 |
+
},
|
| 509 |
+
"tables/virchow2_tiles/raw/.zattrs": {
|
| 510 |
+
"encoding-type": "null",
|
| 511 |
+
"encoding-version": "0.1.0"
|
| 512 |
+
},
|
| 513 |
+
"tables/virchow2_tiles/uns/.zattrs": {
|
| 514 |
+
"encoding-type": "dict",
|
| 515 |
+
"encoding-version": "0.1.0"
|
| 516 |
+
},
|
| 517 |
+
"tables/virchow2_tiles/uns/.zgroup": {
|
| 518 |
+
"zarr_format": 2
|
| 519 |
+
},
|
| 520 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zattrs": {
|
| 521 |
+
"encoding-type": "dict",
|
| 522 |
+
"encoding-version": "0.1.0"
|
| 523 |
+
},
|
| 524 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/.zgroup": {
|
| 525 |
+
"zarr_format": 2
|
| 526 |
+
},
|
| 527 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zarray": {
|
| 528 |
+
"chunks": [],
|
| 529 |
+
"compressor": null,
|
| 530 |
+
"dimension_separator": "/",
|
| 531 |
+
"dtype": "<U7",
|
| 532 |
+
"fill_value": "",
|
| 533 |
+
"filters": null,
|
| 534 |
+
"order": "C",
|
| 535 |
+
"shape": [],
|
| 536 |
+
"zarr_format": 2
|
| 537 |
+
},
|
| 538 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/instance_key/.zattrs": {
|
| 539 |
+
"encoding-type": "string",
|
| 540 |
+
"encoding-version": "0.2.0"
|
| 541 |
+
},
|
| 542 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zarray": {
|
| 543 |
+
"chunks": [],
|
| 544 |
+
"compressor": null,
|
| 545 |
+
"dimension_separator": "/",
|
| 546 |
+
"dtype": "<U5",
|
| 547 |
+
"fill_value": "",
|
| 548 |
+
"filters": null,
|
| 549 |
+
"order": "C",
|
| 550 |
+
"shape": [],
|
| 551 |
+
"zarr_format": 2
|
| 552 |
+
},
|
| 553 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region/.zattrs": {
|
| 554 |
+
"encoding-type": "string",
|
| 555 |
+
"encoding-version": "0.2.0"
|
| 556 |
+
},
|
| 557 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zarray": {
|
| 558 |
+
"chunks": [],
|
| 559 |
+
"compressor": null,
|
| 560 |
+
"dimension_separator": "/",
|
| 561 |
+
"dtype": "<U10",
|
| 562 |
+
"fill_value": "",
|
| 563 |
+
"filters": null,
|
| 564 |
+
"order": "C",
|
| 565 |
+
"shape": [],
|
| 566 |
+
"zarr_format": 2
|
| 567 |
+
},
|
| 568 |
+
"tables/virchow2_tiles/uns/spatialdata_attrs/region_key/.zattrs": {
|
| 569 |
+
"encoding-type": "string",
|
| 570 |
+
"encoding-version": "0.2.0"
|
| 571 |
+
},
|
| 572 |
+
"tables/virchow2_tiles/var/.zattrs": {
|
| 573 |
+
"_index": "_index",
|
| 574 |
+
"column-order": [],
|
| 575 |
+
"encoding-type": "dataframe",
|
| 576 |
+
"encoding-version": "0.2.0"
|
| 577 |
+
},
|
| 578 |
+
"tables/virchow2_tiles/var/.zgroup": {
|
| 579 |
+
"zarr_format": 2
|
| 580 |
+
},
|
| 581 |
+
"tables/virchow2_tiles/var/_index/.zarray": {
|
| 582 |
+
"chunks": [
|
| 583 |
+
2560
|
| 584 |
+
],
|
| 585 |
+
"compressor": {
|
| 586 |
+
"blocksize": 0,
|
| 587 |
+
"clevel": 5,
|
| 588 |
+
"cname": "lz4",
|
| 589 |
+
"id": "blosc",
|
| 590 |
+
"shuffle": 1
|
| 591 |
+
},
|
| 592 |
+
"dimension_separator": "/",
|
| 593 |
+
"dtype": "|O",
|
| 594 |
+
"fill_value": 0,
|
| 595 |
+
"filters": [
|
| 596 |
+
{
|
| 597 |
+
"id": "vlen-utf8"
|
| 598 |
+
}
|
| 599 |
+
],
|
| 600 |
+
"order": "C",
|
| 601 |
+
"shape": [
|
| 602 |
+
2560
|
| 603 |
+
],
|
| 604 |
+
"zarr_format": 2
|
| 605 |
+
},
|
| 606 |
+
"tables/virchow2_tiles/var/_index/.zattrs": {
|
| 607 |
+
"encoding-type": "string-array",
|
| 608 |
+
"encoding-version": "0.2.0"
|
| 609 |
+
},
|
| 610 |
+
"tables/virchow2_tiles/varm/.zattrs": {
|
| 611 |
+
"encoding-type": "dict",
|
| 612 |
+
"encoding-version": "0.1.0"
|
| 613 |
+
},
|
| 614 |
+
"tables/virchow2_tiles/varm/.zgroup": {
|
| 615 |
+
"zarr_format": 2
|
| 616 |
+
},
|
| 617 |
+
"tables/virchow2_tiles/varp/.zattrs": {
|
| 618 |
+
"encoding-type": "dict",
|
| 619 |
+
"encoding-version": "0.1.0"
|
| 620 |
+
},
|
| 621 |
+
"tables/virchow2_tiles/varp/.zgroup": {
|
| 622 |
+
"zarr_format": 2
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"zarr_consolidated_format": 1
|
| 626 |
+
}
|
train/GTEX-13NYB-1426.zarr/.zattrs
ADDED
|
@@ -0,0 +1,55 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"slide_properties": {
|
| 3 |
+
"bounds": [
|
| 4 |
+
0,
|
| 5 |
+
0,
|
| 6 |
+
51791,
|
| 7 |
+
39041
|
| 8 |
+
],
|
| 9 |
+
"level_downsample": [
|
| 10 |
+
1.0,
|
| 11 |
+
4.000167086463476,
|
| 12 |
+
16.002522594176174
|
| 13 |
+
],
|
| 14 |
+
"level_shape": [
|
| 15 |
+
[
|
| 16 |
+
39041,
|
| 17 |
+
51791
|
| 18 |
+
],
|
| 19 |
+
[
|
| 20 |
+
9760,
|
| 21 |
+
12947
|
| 22 |
+
],
|
| 23 |
+
[
|
| 24 |
+
2440,
|
| 25 |
+
3236
|
| 26 |
+
]
|
| 27 |
+
],
|
| 28 |
+
"magnification": 20.0,
|
| 29 |
+
"mpp": 0.4942,
|
| 30 |
+
"n_level": 3,
|
| 31 |
+
"raw": "{\"aperio.AppMag\": \"20\", \"aperio.DSR ID\": \"vaiaperio03\", \"aperio.Date\": \"10/11/13\", \"aperio.DisplayColor\": \"0\", \"aperio.Exposure Scale\": \"0.000001\", \"aperio.Exposure Time\": \"109\", \"aperio.Filename\": \"3004410-001\", \"aperio.Focus Offset\": \"-0.000500\", \"aperio.ICC Profile\": \"ScanScope v1\", \"aperio.ImageID\": \"53776\", \"aperio.Left\": \"15.068634\", \"aperio.LineAreaXOffset\": \"0.023001\", \"aperio.LineAreaYOffset\": \"-0.006920\", \"aperio.LineCameraSkew\": \"0.001659\", \"aperio.MPP\": \"0.4942\", \"aperio.OriginalHeight\": \"39141\", \"aperio.OriginalWidth\": \"52832\", \"aperio.ScanScope ID\": \"SS1553\", \"aperio.StripeWidth\": \"2032\", \"aperio.Time\": \"18:26:18\", \"aperio.Time Zone\": \"GMT-04:00\", \"aperio.Top\": \"21.073389\", \"aperio.User\": \"63878458-d1aa-460a-994f-ae867d93d4c3\", \"openslide.associated.macro.height\": \"629\", \"openslide.associated.macro.width\": \"1600\", \"openslide.associated.thumbnail.height\": \"768\", \"openslide.associated.thumbnail.width\": \"1018\", \"openslide.comment\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"openslide.icc-size\": \"141992\", \"openslide.level-count\": \"3\", \"openslide.level[0].downsample\": \"1\", \"openslide.level[0].height\": \"39041\", \"openslide.level[0].tile-height\": \"240\", \"openslide.level[0].tile-width\": \"240\", \"openslide.level[0].width\": \"51791\", \"openslide.level[1].downsample\": \"4.0001670864634757\", \"openslide.level[1].height\": \"9760\", \"openslide.level[1].tile-height\": \"240\", \"openslide.level[1].tile-width\": \"240\", \"openslide.level[1].width\": \"12947\", \"openslide.level[2].downsample\": \"16.002522594176174\", \"openslide.level[2].height\": \"2440\", \"openslide.level[2].tile-height\": \"240\", \"openslide.level[2].tile-width\": \"240\", \"openslide.level[2].width\": \"3236\", \"openslide.mpp-x\": \"0.49419999999999997\", \"openslide.mpp-y\": \"0.49419999999999997\", \"openslide.objective-power\": \"20\", \"openslide.quickhash-1\": \"e1d358b8a32d0d1994e278eab7bb4c5e27baacb85ebbe59b5fddf67d4637e6ef\", \"openslide.vendor\": \"aperio\", \"tiff.ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"tiff.ResolutionUnit\": \"inch\", \"AppMag\": \"20\", \"DSR ID\": \"vaiaperio03\", \"Date\": \"10/11/13\", \"DisplayColor\": \"0\", \"Exposure Scale\": \"0.000001\", \"Exposure Time\": \"109\", \"Filename\": \"3004410-001\", \"Focus Offset\": \"-0.000500\", \"ICC Profile\": \"ScanScope v1\", \"ImageID\": \"53776\", \"Left\": \"15.068634\", \"LineAreaXOffset\": \"0.023001\", \"LineAreaYOffset\": \"-0.006920\", \"LineCameraSkew\": \"0.001659\", \"MPP\": \"0.4942\", \"OriginalHeight\": \"39141\", \"OriginalWidth\": \"52832\", \"ScanScope ID\": \"SS1553\", \"StripeWidth\": \"2032\", \"Time\": \"18:26:18\", \"Time Zone\": \"GMT-04:00\", \"Top\": \"21.073389\", \"User\": \"63878458-d1aa-460a-994f-ae867d93d4c3\", \"associated.macro.height\": \"629\", \"associated.macro.width\": \"1600\", \"associated.thumbnail.height\": \"768\", \"associated.thumbnail.width\": \"1018\", \"comment\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"icc-size\": \"141992\", \"level-count\": \"3\", \"level[0].downsample\": \"1\", \"level[0].height\": \"39041\", \"level[0].tile-height\": \"240\", \"level[0].tile-width\": \"240\", \"level[0].width\": \"51791\", \"level[1].downsample\": \"4.0001670864634757\", \"level[1].height\": \"9760\", \"level[1].tile-height\": \"240\", \"level[1].tile-width\": \"240\", \"level[1].width\": \"12947\", \"level[2].downsample\": \"16.002522594176174\", \"level[2].height\": \"2440\", \"level[2].tile-height\": \"240\", \"level[2].tile-width\": \"240\", \"level[2].width\": \"3236\", \"mpp-x\": \"0.49419999999999997\", \"mpp-y\": \"0.49419999999999997\", \"objective-power\": \"20\", \"quickhash-1\": \"e1d358b8a32d0d1994e278eab7bb4c5e27baacb85ebbe59b5fddf67d4637e6ef\", \"vendor\": \"aperio\", \"ImageDescription\": \"Aperio Image Library v12.0.11 \\r\\n52832x39141 [0,100 51791x39041] (240x240) JPEG/RGB Q=70|AppMag = 20|StripeWidth = 2032|ScanScope ID = SS1553|Filename = 3004410-001|Date = 10/11/13|Time = 18:26:18|Time Zone = GMT-04:00|User = 63878458-d1aa-460a-994f-ae867d93d4c3|MPP = 0.4942|Left = 15.068634|Top = 21.073389|LineCameraSkew = 0.001659|LineAreaXOffset = 0.023001|LineAreaYOffset = -0.006920|Focus Offset = -0.000500|DSR ID = vaiaperio03|ImageID = 53776|Exposure Time = 109|Exposure Scale = 0.000001|DisplayColor = 0|OriginalWidth = 52832|OriginalHeight = 39141|ICC Profile = ScanScope v1\", \"ResolutionUnit\": \"inch\"}",
|
| 32 |
+
"shape": [
|
| 33 |
+
39041,
|
| 34 |
+
51791
|
| 35 |
+
]
|
| 36 |
+
},
|
| 37 |
+
"spatialdata_attrs": {
|
| 38 |
+
"spatialdata_software_version": "0.5.0",
|
| 39 |
+
"version": "0.1"
|
| 40 |
+
},
|
| 41 |
+
"tile_spec": {
|
| 42 |
+
"tiles": {
|
| 43 |
+
"base_downsample": 1.0,
|
| 44 |
+
"base_level": 0,
|
| 45 |
+
"height": 128,
|
| 46 |
+
"mpp": 0.4942,
|
| 47 |
+
"ops_downsample": 1.0,
|
| 48 |
+
"ops_level": 0,
|
| 49 |
+
"stride_height": 128,
|
| 50 |
+
"stride_width": 128,
|
| 51 |
+
"tissue_name": "tissues",
|
| 52 |
+
"width": 128
|
| 53 |
+
}
|
| 54 |
+
}
|
| 55 |
+
}
|
train/GTEX-13NYB-1426.zarr/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/images/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/shapes/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zattrs
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "anndata",
|
| 3 |
+
"encoding-version": "0.1.0",
|
| 4 |
+
"instance_key": "tile_id",
|
| 5 |
+
"region": "tiles",
|
| 6 |
+
"region_key": "library_id",
|
| 7 |
+
"spatialdata-encoding-type": "ngff:regions_table",
|
| 8 |
+
"version": "0.1"
|
| 9 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zarray
ADDED
|
@@ -0,0 +1,23 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"chunks": [
|
| 3 |
+
1789,
|
| 4 |
+
160
|
| 5 |
+
],
|
| 6 |
+
"compressor": {
|
| 7 |
+
"blocksize": 0,
|
| 8 |
+
"clevel": 5,
|
| 9 |
+
"cname": "lz4",
|
| 10 |
+
"id": "blosc",
|
| 11 |
+
"shuffle": 1
|
| 12 |
+
},
|
| 13 |
+
"dimension_separator": "/",
|
| 14 |
+
"dtype": "<f4",
|
| 15 |
+
"fill_value": 0.0,
|
| 16 |
+
"filters": null,
|
| 17 |
+
"order": "C",
|
| 18 |
+
"shape": [
|
| 19 |
+
28619,
|
| 20 |
+
2560
|
| 21 |
+
],
|
| 22 |
+
"zarr_format": 2
|
| 23 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/X/.zattrs
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "array",
|
| 3 |
+
"encoding-version": "0.2.0"
|
| 4 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zattrs
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "dict",
|
| 3 |
+
"encoding-version": "0.1.0"
|
| 4 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/layers/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zattrs
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_index": "_index",
|
| 3 |
+
"column-order": [
|
| 4 |
+
"tile_id",
|
| 5 |
+
"library_id"
|
| 6 |
+
],
|
| 7 |
+
"encoding-type": "dataframe",
|
| 8 |
+
"encoding-version": "0.2.0"
|
| 9 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zarray
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"chunks": [
|
| 3 |
+
28619
|
| 4 |
+
],
|
| 5 |
+
"compressor": {
|
| 6 |
+
"blocksize": 0,
|
| 7 |
+
"clevel": 5,
|
| 8 |
+
"cname": "lz4",
|
| 9 |
+
"id": "blosc",
|
| 10 |
+
"shuffle": 1
|
| 11 |
+
},
|
| 12 |
+
"dimension_separator": "/",
|
| 13 |
+
"dtype": "|O",
|
| 14 |
+
"fill_value": 0,
|
| 15 |
+
"filters": [
|
| 16 |
+
{
|
| 17 |
+
"id": "vlen-utf8"
|
| 18 |
+
}
|
| 19 |
+
],
|
| 20 |
+
"order": "C",
|
| 21 |
+
"shape": [
|
| 22 |
+
28619
|
| 23 |
+
],
|
| 24 |
+
"zarr_format": 2
|
| 25 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/_index/.zattrs
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "string-array",
|
| 3 |
+
"encoding-version": "0.2.0"
|
| 4 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zattrs
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "categorical",
|
| 3 |
+
"encoding-version": "0.2.0",
|
| 4 |
+
"ordered": false
|
| 5 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/.zgroup
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"zarr_format": 2
|
| 3 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zarray
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"chunks": [
|
| 3 |
+
1
|
| 4 |
+
],
|
| 5 |
+
"compressor": {
|
| 6 |
+
"blocksize": 0,
|
| 7 |
+
"clevel": 5,
|
| 8 |
+
"cname": "lz4",
|
| 9 |
+
"id": "blosc",
|
| 10 |
+
"shuffle": 1
|
| 11 |
+
},
|
| 12 |
+
"dimension_separator": "/",
|
| 13 |
+
"dtype": "|O",
|
| 14 |
+
"fill_value": 0,
|
| 15 |
+
"filters": [
|
| 16 |
+
{
|
| 17 |
+
"id": "vlen-utf8"
|
| 18 |
+
}
|
| 19 |
+
],
|
| 20 |
+
"order": "C",
|
| 21 |
+
"shape": [
|
| 22 |
+
1
|
| 23 |
+
],
|
| 24 |
+
"zarr_format": 2
|
| 25 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/categories/.zattrs
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "string-array",
|
| 3 |
+
"encoding-version": "0.2.0"
|
| 4 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zarray
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"chunks": [
|
| 3 |
+
28619
|
| 4 |
+
],
|
| 5 |
+
"compressor": {
|
| 6 |
+
"blocksize": 0,
|
| 7 |
+
"clevel": 5,
|
| 8 |
+
"cname": "lz4",
|
| 9 |
+
"id": "blosc",
|
| 10 |
+
"shuffle": 1
|
| 11 |
+
},
|
| 12 |
+
"dimension_separator": "/",
|
| 13 |
+
"dtype": "|i1",
|
| 14 |
+
"fill_value": 0,
|
| 15 |
+
"filters": null,
|
| 16 |
+
"order": "C",
|
| 17 |
+
"shape": [
|
| 18 |
+
28619
|
| 19 |
+
],
|
| 20 |
+
"zarr_format": 2
|
| 21 |
+
}
|
train/GTEX-13NYB-1426.zarr/tables/virchow2_tiles/obs/library_id/codes/.zattrs
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"encoding-type": "array",
|
| 3 |
+
"encoding-version": "0.2.0"
|
| 4 |
+
}
|