PDB_ID_chain
stringlengths
6
10
PDB_ID
stringlengths
4
4
Title
stringlengths
4
230
Mutation(s)
stringclasses
2 values
Classification
stringclasses
305 values
Deposit_date
stringdate
1976-03-17 00:00:00
2026-01-20 00:00:00
Release_date
stringdate
1976-05-19 00:00:00
2026-02-25 00:00:00
Method
stringclasses
5 values
Resolution
stringclasses
459 values
R_free
stringclasses
227 values
R_work
stringclasses
211 values
PMID
stringlengths
4
8
DOI
stringlengths
4
68
Model_index
int64
0
76
Asym_ID_type
stringclasses
2 values
Ab_type
stringclasses
30 values
H_subgroup
stringclasses
8 values
L_subgroup
stringclasses
19 values
H_chain_ID
stringclasses
60 values
L_chain_ID
stringclasses
58 values
H_fas_seq
stringlengths
4
919
L_fas_seq
stringlengths
4
627
H_filled_pdb_seq
stringlengths
4
896
L_filled_pdb_seq
stringlengths
4
523
H_mean_radius
float64
0
79.7
L_mean_radius
float64
0
84.3
H_fas_seq_len
int64
0
919
L_fas_seq_len
int64
0
627
H_pdb_seq_len
int64
0
879
L_pdb_seq_len
int64
0
523
H_filled_seq_len
int64
0
896
L_filled_seq_len
int64
0
523
HL_inf_res_num
int64
0
175
H_mol_name
stringlengths
2
331
L_mol_name
stringlengths
2
151
H_species
stringclasses
68 values
L_species
stringclasses
42 values
Ag_chain_ID(s)
stringclasses
279 values
Ag_type(s)
stringclasses
16 values
Ag_mol_name(s)
stringlengths
2
390
Ag_species
stringclasses
743 values
Ab_ag_inf_res_num
stringlengths
1
11
CDR_inf_res_num
stringclasses
444 values
CDR_inf_res_ratio
stringlengths
1
19
hl_label
stringclasses
3 values
split
stringclasses
1 value
6xp6_H_G
6xp6
3c11-dq2-glia-a2 complex
no
peptide binding protein
2020-07-08
2021-07-28
x-ray diffraction
2.4
0.212
0.176
34417258
10.1126/sciimmunol.abg4925
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
H
G
QVQLVQSGAEVKKPGSSVKVSCKASGGTVRSRVHAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDVQRMGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
DIQMTQSPSSVSTSVGDRVTITCRASQDISNWLAWYQQKPGKAPKLLIYDSSTLQSGVPSRFSGSGSGTDFTLTISTLQPEDFATYYCQQFNSYPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKKPGSSVKVSCKASGGTVRSRVHAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDVQRMGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSVSTSVGDRVTITCRASQDISNWLAWYQQKPGKAPKLLIYDSSTLQSGVPSRFSGSGSGTDFTLTISTLQPEDFATYYCQQFNSYPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.827644
22.257147
224
214
220
212
220
212
107
3.c11 igh fab
3.c11 igk fab
homo sapiens
homo sapiens
A;B;C
protein;protein;peptide
mhc class ii hla-dq-alpha chain;mhc class ii hla-dq-beta-1;dq2-glia-a2 peptide
homo sapiens;homo sapiens;triticum aestivum
32;18;17
14;9;7
0.82;0.82;0.78
HL
train
6xp6_J_I
6xp6
3c11-dq2-glia-a2 complex
no
peptide binding protein
2020-07-08
2021-07-28
x-ray diffraction
2.4
0.212
0.176
34417258
10.1126/sciimmunol.abg4925
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
J
I
QVQLVQSGAEVKKPGSSVKVSCKASGGTVRSRVHAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDVQRMGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
DIQMTQSPSSVSTSVGDRVTITCRASQDISNWLAWYQQKPGKAPKLLIYDSSTLQSGVPSRFSGSGSGTDFTLTISTLQPEDFATYYCQQFNSYPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKKPGSSVKVSCKASGGTVRSRVHAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDVQRMGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSVSTSVGDRVTITCRASQDISNWLAWYQQKPGKAPKLLIYDSSTLQSGVPSRFSGSGSGTDFTLTISTLQPEDFATYYCQQFNSYPLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.514532
21.717464
224
214
213
212
220
212
94
3.c11 igh fab
3.c11 igk fab
homo sapiens
homo sapiens
D;E;F
protein;protein;peptide
mhc class ii hla-dq-alpha chain;mhc class ii hla-dq-beta-1;dq2-glia-a2 peptide
homo sapiens;homo sapiens;triticum aestivum
33;21;16
15;12;7
0.79;0.86;0.88
HL
train
6xpx_B_C
6xpx
human antibody s1v2-51 in complex with the influenza hemagglutinin head domain of a/aichi/2/1968 (x-31)(h3n2)
no
immune system/viral protein
2020-07-09
2021-05-19
x-ray diffraction
2.6
0.215
0.185
34060327
10.1128/mBio.01144-21
0
auth_asym_id
FabH:FabL
IGHV3
IGKV4
B
C
QVQLVESGGGVVQPGRSLRLSCVASGFTFRDSVMHWVRQAPGKGLEWVAVTSFDGGESYSADSVKGRFTISRDNSKSTLSLQMNILRPEDTGVYYCARDRGGLDVWGQGTTVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
DIVMTQSPESLAVSLGERATINCKSSQSVSFGSSDKNYLGWYQQKPGQPPKLLINWASTRESGVSDRFRGTGSGTDFTLTISSLQAEDAAVYYCHQYYTPPYSFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVESGGGVVQPGRSLRLSCVASGFTFRDSVMHWVRQAPGKGLEWVAVTSFDGGESYSADSVKGRFTISRDNSKSTLSLQMNILRPEDTGVYYCARDRGGLDVWGQGTTVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
DIVMTQSPESLAVSLGERATINCKSSQSVSFGSSDKNYLGWYQQKPGQPPKLLINWASTRESGVSDRFRGTGSGTDFTLTISSLQAEDAAVYYCHQYYTPPYSFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.209812
22.96707
227
220
213
218
216
218
90
s1v2-51 fab heavy chain
s1v2-51 fab light chain
homo sapiens
homo sapiens
A
protein
hemagglutinin
influenza a virus
40
18
0.75
HL
train
6xq0_B_C
6xq0
human antibody s8v2-18 in complex with the influenza hemagglutinin head domain of a/california/7/2009(nymc-x181)(h1n1)
no
viral protein/immune system
2020-07-09
2021-05-19
x-ray diffraction
2.3
0.268
0.222
34060327
10.1128/mBio.01144-21
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
B
C
EVQLVESGGGLVRPGGSLTLTCAGSGFMFRSYDMHWVRQAAGKGLEWVAGMGKGGETFYAGSVKGRFTISRENARNSLYLQMHSLRAGDTAVYYCARALTEWLFQRGTRNHYYYGMDVWGQGTTITVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
EIVLTQSPGTLSLSPGERATLSCRASQIIDNKYLAWYQQKPGQAPRLLIYGASNRATGIPDRFSGSGSGTEFTLIISRLEPEDLAVYYCQQFGSSVYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVRPGGSLTLTCAGSGFMFRSYDMHWVRQAAGKGLEWVAGMGKGGETFYAGSVKGRFTISRENARNSLYLQMHSLRAGDTAVYYCARALTEWLFQRGTRNHYYYGMDVWGQGTTITVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
EIVLTQSPGTLSLSPGERATLSCRASQIIDNKYLAWYQQKPGQAPRLLIYGASNRATGIPDRFSGSGSGTEFTLIISRLEPEDLAVYYCQQFGSSVYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.231901
23.573723
240
215
230
213
230
213
96
antibody s8v2-18 heavy chain
antibody s8v2-18 light chain
homo sapiens
homo sapiens
A
protein
hemagglutinin
influenza a virus (a/reassortant/nymc x-181a(a/nymc x-157 x california/07/2009)(h1n1))
43
16
0.94
HL
train
6xq0_E_F
6xq0
human antibody s8v2-18 in complex with the influenza hemagglutinin head domain of a/california/7/2009(nymc-x181)(h1n1)
no
viral protein/immune system
2020-07-09
2021-05-19
x-ray diffraction
2.3
0.268
0.222
34060327
10.1128/mBio.01144-21
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
E
F
EVQLVESGGGLVRPGGSLTLTCAGSGFMFRSYDMHWVRQAAGKGLEWVAGMGKGGETFYAGSVKGRFTISRENARNSLYLQMHSLRAGDTAVYYCARALTEWLFQRGTRNHYYYGMDVWGQGTTITVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
EIVLTQSPGTLSLSPGERATLSCRASQIIDNKYLAWYQQKPGQAPRLLIYGASNRATGIPDRFSGSGSGTEFTLIISRLEPEDLAVYYCQQFGSSVYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVRPGGSLTLTCAGSGFMFRSYDMHWVRQAAGKGLEWVAGMGKGGETFYAGSVKGRFTISRENARNSLYLQMHSLRAGDTAVYYCARALTEWLFQRGTRNHYYYGMDVWGQGTTITVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
EIVLTQSPGTLSLSPGERATLSCRASQIIDNKYLAWYQQKPGQAPRLLIYGASNRATGIPDRFSGSGSGTEFTLIISRLEPEDLAVYYCQQFGSSVYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.548946
23.279877
240
215
230
213
230
213
97
antibody s8v2-18 heavy chain
antibody s8v2-18 light chain
homo sapiens
homo sapiens
D
protein
hemagglutinin
influenza a virus (a/reassortant/nymc x-181a(a/nymc x-157 x california/07/2009)(h1n1))
45
17
0.89
HL
train
6xq4_C_B
6xq4
human antibody s8v2-47 in complex with the influenza hemagglutinin head domain of a/beijing/262/1995(h1n1)
no
viral protein/immune system
2020-07-09
2021-05-19
x-ray diffraction
3.35
0.279
0.238
34060327
10.1128/mBio.01144-21
0
auth_asym_id
FabH:FabL
IGHV3
IGKV4
C
B
EVQLVESGGGLVQPGGSLRLSCAASGFTVSRNYMSWVRQAPGKGLEWVSIIYSGDDTYYADSVKGRFTISRDNSKNTLYLEMNSLRAEDTAVYYCARGEMGDGYYWAPFDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
DIVMTQSPDSLAVSLGERATINCKSSQSLLYSSRNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRLSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSIPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFTVSRNYMSWVRQAPGKGLEWVSIIYSGDDTYYADSVKGRFTISRDNSKNTLYLEMNSLRAEDTAVYYCARGEMGDGYYWAPFDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
DIVMTQSPDSLAVSLGERATINCKSSQSLLYSSRNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRLSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSIPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
21.338503
23.7889
233
220
223
218
223
218
103
antibody s8v2-47 heavy chain
antibody s8v2-47 light chain
homo sapiens
homo sapiens
A
protein
hemagglutinin
influenza a virus (a/beijing/262/1995(h1n1))
37
20
0.95
HL
train
6xq4_E_F
6xq4
human antibody s8v2-47 in complex with the influenza hemagglutinin head domain of a/beijing/262/1995(h1n1)
no
viral protein/immune system
2020-07-09
2021-05-19
x-ray diffraction
3.35
0.279
0.238
34060327
10.1128/mBio.01144-21
0
auth_asym_id
FabH:FabL
IGHV3
IGKV4
E
F
EVQLVESGGGLVQPGGSLRLSCAASGFTVSRNYMSWVRQAPGKGLEWVSIIYSGDDTYYADSVKGRFTISRDNSKNTLYLEMNSLRAEDTAVYYCARGEMGDGYYWAPFDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
DIVMTQSPDSLAVSLGERATINCKSSQSLLYSSRNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRLSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSIPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFTVSRNYMSWVRQAPGKGLEWVSIIYSGDDTYYADSVKGRFTISRDNSKNTLYLEMNSLRAEDTAVYYCARGEMGDGYYWAPFDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
DIVMTQSPDSLAVSLGERATINCKSSQSLLYSSRNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRLSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSIPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
21.935085
23.838793
233
220
223
218
223
218
98
antibody s8v2-47 heavy chain
antibody s8v2-47 light chain
homo sapiens
homo sapiens
D
protein
hemagglutinin
influenza a virus (a/beijing/262/1995(h1n1))
34
19
0.95
HL
train
6zqk_B_A
6zqk
her2-binding scfv-fab fusion 841
no
antitumor protein
2020-07-09
2021-06-30
x-ray diffraction
2.2
0.241
0.202
34145240
10.1038/s41467-021-23948-6
0
auth_asym_id
FabH:VHVL+
IGHV1
N.A.
B
A
QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYFINWVREAPGQGLEWMGHISSSYATSTYNQKFQGRVTFTVDTSSSTAYMELSSLRSEDTAVYYCVRSGNYEEYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLESVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGSDIVLTQSPDSLAVSLGERATINCRSSQTLLYSNNQKNYLAWYQKKPGQPPKLLISWAFTRKSGVPDRFSGS...
QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYFINWVREAPGQGLEWMGHISSSYATSTYNQKFQGRVTFTVDTSSSTAYMELSSLRSEDTAVYYCVRSGNYEEYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLESVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGSDIVLTQSPDSLAVSLGERATINCRSSQTLLYSNNQKNYLAWYQKKPGQPPKLLISWAFTRKSGVPDRFSGS...
21.734354
33.144535
223
469
215
442
221
466
116
841 light chain
841 heavy chain
mus musculus
mus musculus
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
6zqk_D_C
6zqk
her2-binding scfv-fab fusion 841
no
antitumor protein
2020-07-09
2021-06-30
x-ray diffraction
2.2
0.241
0.202
34145240
10.1038/s41467-021-23948-6
0
auth_asym_id
FabH:VHVL+
IGHV1
N.A.
D
C
QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYFINWVREAPGQGLEWMGHISSSYATSTYNQKFQGRVTFTVDTSSSTAYMELSSLRSEDTAVYYCVRSGNYEEYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLESVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGSDIVLTQSPDSLAVSLGERATINCRSSQTLLYSNNQKNYLAWYQKKPGQPPKLLISWAFTRKSGVPDRFSGS...
QVQLVQSGAEVKKPGASVKVSCKASGYSFTGYFINWVREAPGQGLEWMGHISSSYATSTYNQKFQGRVTFTVDTSSSTAYMELSSLRSEDTAVYYCVRSGNYEEYAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLESVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
EVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGSDIVLTQSPDSLAVSLGERATINCRSSQTLLYSNNQKNYLAWYQKKPGQPPKLLISWAFTRKSGVPDRFSGS...
21.676981
32.976505
223
469
213
443
220
467
114
841 light chain
841 heavy chain
mus musculus
mus musculus
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
6xqw_H_L
6xqw
crystal structure of malim03 fab in complex with pfmsp1-19
no
immune system
2020-07-10
2021-03-03
x-ray diffraction
2.99
0.309
0.252
33661302
10.1084/jem.20200942
0
auth_asym_id
FabH:FabL
IGHV4
IGLV1
H
L
QVQLQQWGAGLLKPSETLSLTCAVYGGSFSGYYWTWIRQPPGKGLEWIGEINNSGKTNYNPSLKSRVSISIDTSKNQFSLKVTSVTAADTAVYYCARGPQQHLEPPFDYWGHGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
QSVLTQPPSASGTPGQRVTISCSGSNSNIATNYVCWYQQYPGTAPKPLIYRTDQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
QVQLQQWGAGLLKPSETLSLTCAVYGGSFSGYYWTWIRQPPGKGLEWIGEINNSGKTNYNPSLKSRVSISIDTSKNQFSLKVTSVTAADTAVYYCARGPQQHLEPPFDYWGHGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VLTQPPSASGTPGQRVTISCSGSNSNIATNYVCWYQQYPGTAPKPLIYRTDQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE
20.548882
23.74291
223
216
219
212
221
212
89
malim03 fab heavy chain
malim03 fab light chain
homo sapiens
homo sapiens
E
protein
pfmsp1-19
plasmodium falciparum
28
12
0.67
HL
train
6zrv_B
6zrv
crystal structure of stabilized active plasminogen activator inhibitor-1 (pai-1-w175f) in complex with an inhibitory nanobody (vhh-s-a93, nb93)
yes
hydrolase
2020-07-15
2020-08-26
x-ray diffraction
1.88
0.233
0.197
32824134
10.3390/ijms21165859
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
QVQLVESGGGLVQPGGSLRLSCAASGFSLDNYAIGWFRQAPGKEREGVSCISSSDGSTYYTDSVEGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCAADYGSSWCTFNGMDYWGQGTQVTVSS
N.A.
QVQLVESGGGLVQPGGSLRLSCAASGFSLDNYAIGWFRQAPGKEREGVSCISSSDGSTYYTDSVEGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCAADYGSSWCTFNGMDYWGQGTQVTVSS
N.A.
13.51795
0
123
0
123
0
123
0
0
vhh-s-a93 (nb93)
N.A.
vicugna pacos
N.A.
A
protein
plasminogen activator inhibitor 1
homo sapiens
51
10
0.38
H_only
train
6xsk_I_K
6xsk
cryo-em structure of vaccine-elicited rhesus antibody 789-203-3c12 in complex with stabilized si06 (a/solomon islands/3/06) influenza hemagglutinin trimer
no
immune system/viral protein
2020-07-15
2021-07-21
electron microscopy
3.85
N.A.
N.A.
36356572
10.1016/j.immuni.2022.10.015
0
auth_asym_id
VH:VL
IGHV4
IGKV1
I
K
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD...
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSS
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIK
14.17058
13.292862
455
214
125
107
125
107
42
789-203-3c12 fab heavy chain
789-203-3c12 fab light chain
macaca mulatta
macaca mulatta
B
protein
hemagglutinin ha2 chain
influenza a virus (a/solomon islands/3/2006(h1n1))
50
22
0.81
HL
train
6xsk_G_J
6xsk
cryo-em structure of vaccine-elicited rhesus antibody 789-203-3c12 in complex with stabilized si06 (a/solomon islands/3/06) influenza hemagglutinin trimer
no
immune system/viral protein
2020-07-15
2021-07-21
electron microscopy
3.85
N.A.
N.A.
36356572
10.1016/j.immuni.2022.10.015
0
auth_asym_id
VH:VL
IGHV4
IGKV1
G
J
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD...
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSS
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIK
14.251274
13.337558
455
214
125
107
125
107
41
789-203-3c12 fab heavy chain
789-203-3c12 fab light chain
macaca mulatta
macaca mulatta
D
protein
hemagglutinin ha2 chain
influenza a virus (a/solomon islands/3/2006(h1n1))
47
22
0.85
HL
train
6xsk_H_L
6xsk
cryo-em structure of vaccine-elicited rhesus antibody 789-203-3c12 in complex with stabilized si06 (a/solomon islands/3/06) influenza hemagglutinin trimer
no
immune system/viral protein
2020-07-15
2021-07-21
electron microscopy
3.85
N.A.
N.A.
36356572
10.1016/j.immuni.2022.10.015
0
auth_asym_id
VH:VL
IGHV4
IGKV1
H
L
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD...
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLQESGPGLVKPSEILSLTCAVSGGSFSSYCWGWIRQPPGKGLEWIGSICGSGGSNYLNPSLKSRVTLSVDTSKNQFSLILNSVTAADTAVYYCAREGITIFGVVIPRVLDSWGQGAVVTVSS
DIQMTQSPSSLSASVGDTVTITCRASQSISSWLAWYQQKPGKAPNLLIYRASTLQSGVPSRFSGSGSGTDFTLTISSLQSEDFATYFCQQSTSSPFTFGPGTKLDIK
14.207065
13.340546
455
214
125
107
125
107
41
789-203-3c12 fab heavy chain
789-203-3c12 fab light chain
macaca mulatta
macaca mulatta
F
protein
hemagglutinin ha2 chain
influenza a virus (a/solomon islands/3/2006(h1n1))
45
21
0.78
HL
train
6xsn_H_L
6xsn
crystal structure of nhp vd20.5a4 fab in complex with 16055 v1v2 1fd6 scaffold
no
immune system
2020-07-15
2021-07-21
x-ray diffraction
2.87
0.267
0.221
34559844
10.1371/journal.ppat.1009543
0
auth_asym_id
FabH:FabL
IGHV4
IGKV1
H
L
QVQLQESGPGLVKPSETLSLTCAVSGASISSNYWSWIRQPPGKGLEWIGRIYDPTDSTDYNPSLESRATISKDTSKNHFSLTLSSVTAADTAVYFCARGLWSGYFFWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
DIQMTQSPSSLSASVGDSVTVTCRASQGIDKELSWYQQKPGKAPTLLIYAASSLQTGVSSRFSGSGSGTDYTLTISSLQPEDVATYYCLQDYATPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLQESGPGLVKPSETLSLTCAVSGASISSNYWSWIRQPPGKGLEWIGRIYDPTDSTDYNPSLESRATISKDTSKNHFSLTLSSVTAADTAVYFCARGLWSGYFFWFDVWGPGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
DIQMTQSPSSLSASVGDSVTVTCRASQGIDKELSWYQQKPGKAPTLLIYAASSLQTGVSSRFSGSGSGTDYTLTISSLQPEDVATYYCLQDYATPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
20.631948
23.37009
224
214
214
214
221
214
92
vd20.5a4_heavy_chain
vd20.5a4_light_chain
macaca mulatta
macaca mulatta
C
protein
16055_v1v2-1fd6
macaca mulatta
25
15
1
HL
train
6xsw_A_B
6xsw
structure of the notch3 nrr in complex with an antibody fab fragment
no
signaling protein/immune system
2020-07-16
2021-07-21
x-ray diffraction
2.98
0.256
0.233
34095881
10.1016/j.xcrm.2021.100279
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
A
B
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPC
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
20.757236
23.639555
231
214
215
211
220
213
103
anti-n3 fab heavy chain
anti-n3 fab light chain
rattus norvegicus
rattus norvegicus
C
protein
neurogenic locus notch homolog protein 3
homo sapiens
61
20
0.65
HL
train
6xsw_D_E
6xsw
structure of the notch3 nrr in complex with an antibody fab fragment
no
signaling protein/immune system
2020-07-16
2021-07-21
x-ray diffraction
2.98
0.256
0.233
34095881
10.1016/j.xcrm.2021.100279
0
auth_asym_id
FabH:VL+
IGHV3
IGKV1
D
E
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPC
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVD
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS
19.88012
19.132822
231
214
184
144
214
176
72
anti-n3 fab heavy chain
anti-n3 fab light chain
rattus norvegicus
rattus norvegicus
F
protein
neurogenic locus notch homolog protein 3
homo sapiens
65
23
0.7
HL
train
6xsw_G_I
6xsw
structure of the notch3 nrr in complex with an antibody fab fragment
no
signaling protein/immune system
2020-07-16
2021-07-21
x-ray diffraction
2.98
0.256
0.233
34095881
10.1016/j.xcrm.2021.100279
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
G
I
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPC
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
23.161907
22.41074
231
214
215
211
219
211
101
anti-n3 fab heavy chain
anti-n3 fab light chain
rattus norvegicus
rattus norvegicus
J
protein
neurogenic locus notch homolog protein 3
homo sapiens
52
17
0.68
HL
train
6xsw_H_L
6xsw
structure of the notch3 nrr in complex with an antibody fab fragment
no
signaling protein/immune system
2020-07-16
2021-07-21
x-ray diffraction
2.98
0.256
0.233
34095881
10.1016/j.xcrm.2021.100279
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPC
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGYAFTDYWMTWVRQAPGKGLEWVAEISPNSGGTNFNEKFKGRFTISVDNAKNSLYLQMNSLRAEDTAVYYCARGEIRYNWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
DIQMTQSPSSLSASVGDRVTITCKASQNVGNNIAWYQQKPGKAPKLLIYYASNRYTGVPSRFSGSGYGTDFTLTISSLQPEDFATYYCQRLYNSPFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
20.887043
23.731861
231
214
217
213
220
213
104
anti-n3 fab heavy chain
anti-n3 fab light chain
rattus norvegicus
rattus norvegicus
X
protein
neurogenic locus notch homolog protein 3
homo sapiens
62
21
0.68
HL
train
6ztd_H_L
6ztd
crystal structure of the bcr fab fragment from subset #169 case p6540
no
immune system
2020-07-18
2021-05-26
x-ray diffraction
3.43
0.263
0.217
33036024
10.1182/blood.2020005216
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
H
L
EVQLVESGGGLVQPGGSLRLSCAASGFTFSDYNMNWVRQAPGKGLQWVSYISDSASTIYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAMYYCARDGVGAPLWGQGTTVTVSSGSASAPTLFPLVSCENSPSDTSSVLVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKNVPLPV
SYVLTQPPSVSVAPGKTARISCGGNNIGSKSVHWYQQKPGQAPVLVIYYDTDRPSGIPERFSGSNSGNTATLTISRVEAGDEAGYYCQVWDSSSDHPWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
VQLVESGGGLVQPGGSLRLSCAASGFTFSDYNMNWVRQAPGKGLQWVSYISDSASTIYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTAMYYCARDGVGAPLWGQGTTVTVSSGSASAPTLFPLVSCENSPSDTSSVLVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKNVP
YVLTQPPSVSVAPGKTARISCGGNNIGSKSVHWYQQKPGQAPVLVIYYDTDRPSGIPERFSGSNSGNTATLTISRVEAGDEAGYYCQVWDSSSDHPWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE
19.437338
23.959213
221
215
187
212
217
212
101
heavy chain of the fab fragment from bcr derived from the p6540 cll clone
light chain of the fab fragment from bcr derived from the p6540 cll clone
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7jgj_H_L
7jgj
iga1 protease in complex with neutralizing mab
no
immune system
2020-07-19
2020-12-09
electron microscopy
4.8
N.A.
N.A.
33247098
10.1038/s41467-020-19887-3
0
auth_asym_id
FabH:FabL
IGHV1
IGKV6
H
L
EVQLQQSGPELEKPGASMKISCKASGYSFTGYNMNWVKQSNGKSLEWIGSIDPYTGGSNYNQKFMGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCATVVGRVYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
EEVLTQSPAIMSASPGEKVTMTCSASSSVSYIHWYQQKSNTSPKLWIYATSKLASGVPGRFSGSGSGNSYSLTISSMEAEDVATYYCFQGSGYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
EVQLQQSGPELEKPGASMKISCKASGYSFTGYNMNWVKQSNGKSLEWIGSIDPYTGGSNYNQKFMGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCATVVGRVYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
EEVLTQSPAIMSASPGEKVTMTCSASSSVSYIHWYQQKSNTSPKLWIYATSKLASGVPGRFSGSGSGNSYSLTISSMEAEDVATYYCFQGSGYPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
22.231369
23.119463
218
213
218
212
218
212
101
mab heavy chain
mab light chain
mus musculus
mus musculus
A
protein
immunoglobulin a1 protease
streptococcus pneumoniae
56
24
0.8
HL
train
7ckw_N
7ckw
cryo-em structure of fenoldopam bound dopamine receptor drd1-gs signaling complex
yes
cell cycle
2020-07-20
2021-03-03
electron microscopy
3.22
N.A.
N.A.
33571432
10.1016/j.cell.2021.01.028
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.477831
0
156
0
128
0
128
0
0
nanobody 35
N.A.
lama glama
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
57;36
16;11
0.52;0.69
H_only
train
7ckx_N
7ckx
cryo-em structure of a77636 bound dopamine receptor drd1-gs signaling complex
yes
cell cycle
2020-07-20
2021-03-03
electron microscopy
3.54
N.A.
N.A.
33571432
10.1016/j.cell.2021.01.028
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.645241
0
156
0
128
0
128
0
0
nanobody 35
N.A.
lama glama
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
56;38
15;12
0.52;0.71
H_only
train
7cky_N
7cky
cryo-em structure of pw0464 bound dopamine receptor drd1-gs signaling complex
yes
cell cycle
2020-07-20
2021-03-03
electron microscopy
3.2
N.A.
N.A.
33571432
10.1016/j.cell.2021.01.028
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.421802
0
156
0
128
0
128
0
0
nanobody 35
N.A.
lama glama
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
51;36
14;11
0.5;0.61
H_only
train
7ckz_N
7ckz
cryo-em structure of dopamine and ly3154207 bound dopamine receptor drd1-gs signaling complex
yes
cell cycle
2020-07-20
2021-03-03
electron microscopy
3.1
N.A.
N.A.
33571432
10.1016/j.cell.2021.01.028
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.421589
0
156
0
128
0
128
0
0
nanobody 35
N.A.
lama glama
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
52;36
14;11
0.48;0.65
H_only
train
6ztr_H_L
6ztr
crystal structure of the anti-human p-cadherin fab cqy684 in complex with human p-cadherin(108-324)
no
immune system
2020-07-20
2021-05-05
x-ray diffraction
2.1
0.221
0.192
33879555
10.1158/1535-7163.MCT-20-0708
0
auth_asym_id
FabH:FabL
IGHV6
IGKV1
H
L
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSQSAAWNWIRQSPSRGLEWLGRIYYRSKWYNDYALSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGEGYGREGFAIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSEFDYKDDDDKGAPHHHHHH
DIQMTQSPSSLSASVGDRVTITCRASQTISNTLAWYQQKPGKAPKLLIYAASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYLSWFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEA
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSQSAAWNWIRQSPSRGLEWLGRIYYRSKWYNDYALSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGEGYGREGFAIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSEFDY
DIQMTQSPSSLSASVGDRVTITCRASQTISNTLAWYQQKPGKAPKLLIYAASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYLSWFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
22.09478
22.98622
244
213
229
210
229
210
95
cqy684 fab heavy-chain
cqy684 fab light-chain
homo sapiens
homo sapiens
I
protein
cadherin-3
homo sapiens
44
15
0.65
HL
train
6ztr_A_B
6ztr
crystal structure of the anti-human p-cadherin fab cqy684 in complex with human p-cadherin(108-324)
no
immune system
2020-07-20
2021-05-05
x-ray diffraction
2.1
0.221
0.192
33879555
10.1158/1535-7163.MCT-20-0708
0
auth_asym_id
FabH:FabL
IGHV6
IGKV1
A
B
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSQSAAWNWIRQSPSRGLEWLGRIYYRSKWYNDYALSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGEGYGREGFAIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSEFDYKDDDDKGAPHHHHHH
DIQMTQSPSSLSASVGDRVTITCRASQTISNTLAWYQQKPGKAPKLLIYAASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYLSWFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEA
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSQSAAWNWIRQSPSRGLEWLGRIYYRSKWYNDYALSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGEGYGREGFAIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSEFDY
DIQMTQSPSSLSASVGDRVTITCRASQTISNTLAWYQQKPGKAPKLLIYAASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYLSWFTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
23.56125
22.745754
244
213
229
210
229
210
94
cqy684 fab heavy-chain
cqy684 fab light-chain
homo sapiens
homo sapiens
J
protein
cadherin-3
homo sapiens
38
14
0.7
HL
train
7jhg_H_L
7jhg
cryo-em structure of atp-bound fully inactive ampk in complex with dorsomorphin (compound c) and fab-nanobody
no
transferase/immune system
2020-07-20
2021-07-21
electron microscopy
3.47
N.A.
N.A.
34437114
10.1126/science.abe7565
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
QMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
23.879349
22.479578
237
215
228
211
228
211
110
fab heavy chain
fab light chain
synthetic construct
synthetic construct
A
protein
5'-amp-activated protein kinase catalytic subunit alpha-1
homo sapiens
68
26
0.81
HL
train
7jhg_N
7jhg
cryo-em structure of atp-bound fully inactive ampk in complex with dorsomorphin (compound c) and fab-nanobody
no
transferase/immune system
2020-07-20
2021-07-21
electron microscopy
3.47
N.A.
N.A.
34437114
10.1126/science.abe7565
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAMHHHHHHGENLYFQGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVS
N.A.
14.192856
0
159
0
120
0
120
0
0
nanobody
N.A.
synthetic construct
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7jhh_H_L
7jhh
cryo-em structure of atp-bound fully inactive ampk in complex with fab and nanobody
no
transferase/immune system
2020-07-20
2021-07-21
electron microscopy
3.92
N.A.
N.A.
34437114
10.1126/science.abe7565
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
QMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
23.882214
22.52294
237
215
228
211
228
211
113
fab heavy chain
fab light chain
synthetic construct
synthetic construct
A
protein
5'-amp-activated protein kinase catalytic subunit alpha-1
homo sapiens
68
25
0.81
HL
train
7jhh_N
7jhh
cryo-em structure of atp-bound fully inactive ampk in complex with fab and nanobody
no
transferase/immune system
2020-07-20
2021-07-21
electron microscopy
3.92
N.A.
N.A.
34437114
10.1126/science.abe7565
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAMHHHHHHGENLYFQGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVS
N.A.
14.204542
0
159
0
120
0
120
0
0
nanobody
N.A.
synthetic construct
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7jix_H_L
7jix
murine antibody that engages the influenza hemagglutinin receptor binding site
no
viral protein/immune system
2020-07-23
2021-07-28
x-ray diffraction
3.9
0.255
0.215
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV5
IGKV7
H
L
ASEVQLQESGPELVKPGASVKISCKASGYAFSRSWMNWVKQRPGKGLEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYFCARGSNSFAYWGQGTLVTVSGAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGHHHHHH
ASDIVLTQSPASLAVSLGQRATISCKASQSVDFDGDSYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSSEDPYTFGGGTKLEIKRADGAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
EVQLQESGPELVKPGASVKISCKASGYAFSRSWMNWVKQRPGKGLEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYFCARGSNSFAYWGQGTLVTVSGAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG
DIVLTQSPASLAVSLGQRATISCKASQSVDFDGDSYMNWYQQKPGQPPKLLIYTTSNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSSEDPYTFGGGTKLEIKRADGAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
21.307682
23.464382
227
220
219
216
219
216
100
fab heavy chain
fab light chain
mus musculus
mus musculus
A
protein
hemagglutinin ha1 chain
influenza a virus (a/solomon islands/3/2006 (egg passage)(h1n1))
71
21
0.64
HL
train
6zvf_H_L
6zvf
crystal structure of the recombinant fab fragment derived from the hybridoma m3/38 in complex with a human galectin-3 peptide
yes
immune system
2020-07-24
2021-04-14
x-ray diffraction
1.9
0.243
0.203
33795750
10.1038/s41598-021-86641-0
0
auth_asym_id
FabH:FabL
IGHV7
IGKV2
H
L
QIQLVQSGPELKKPGESVKISCKASGYTFTDYAIHWVKQAPGKGLKWMGWINTYTGKPIYADDFKGRFVFSLEASASTANLQISNLKNEDTATYLCARGTMMASLDYWGQGVMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH
DVVMTQTPVSLSLAIGQPASISCKSSQSLVHSDGKTYLSWILQRPGQSPKGLIYLVSKLDSGVPDRFSGSGSETEFTLKISRVEAEDLGVYYCWQATHFPLTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QIQLVQSGPELKKPGESVKISCKASGYTFTDYAIHWVKQAPGKGLKWMGWINTYTGKPIYADDFKGRFVFSLEASASTANLQISNLKNEDTATYLCARGTMMASLDYWGQGVMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
DVVMTQTPVSLSLAIGQPASISCKSSQSLVHSDGKTYLSWILQRPGQSPKGLIYLVSKLDSGVPDRFSGSGSETEFTLKISRVEAEDLGVYYCWQATHFPLTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
20.810532
24.16079
227
219
221
219
221
219
105
chimeric fab m3/38 (l,h)
chimeric fab m3/38 (l,h)
rattus norvegicus
rattus norvegicus
P
peptide
galectin-3
homo sapiens
34
18
0.72
HL
train
7cmk_H_L
7cmk
e30 e-particle in complex with 6c5
no
virus
2020-07-27
2020-08-12
electron microscopy
3.4
N.A.
N.A.
32887892
10.1038/s41467-020-18250-w
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
H
L
QVQLQQSGSELVRPGASVKLSCRASGYTFTTYWMHWVKQRPGQGLEWIGNIYPHSGNTNYDERFKSKATLTVDTSSSTAYMQLSSLTSEDSAVYYCTRDLRGFAYWGQGTTVTVSSPKTTPPSVYPLAPAAASTAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
DIELTQSPAIMSASPGEKVTMTCSASSSLRYMHWYQQKSGTSPKRWIYDTYNLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
QVQLQQSGSELVRPGASVKLSCRASGYTFTTYWMHWVKQRPGQGLEWIGNIYPHSGNTNYDERFKSKATLTVDTSSSTAYMQLSSLTSEDSAVYYCTRDLRGFAYWGQGTTVTVSSPKTTPPSVYPLAPAAASTAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
DIELTQSPAIMSASPGEKVTMTCSASSSLRYMHWYQQKSGTSPKRWIYDTYNLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
22.256105
23.204784
216
213
212
213
216
213
96
heavy chain
light chain
mus musculus
mus musculus
A
protein
vp1
echovirus e30
41
17
0.81
HL
train
7jjo_N
7jjo
structural basis of the activation of heterotrimeric gs-protein by isoproterenol-bound beta1-adrenergic receptor
yes
signaling protein
2020-07-27
2020-09-02
electron microscopy
2.6
N.A.
N.A.
32818430
10.1016/j.molcel.2020.08.001
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.883424
0
138
0
128
0
128
0
0
nanobody 35
N.A.
lama glama
N.A.
B;A
protein;protein
guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(s) subunit alpha isoforms short
bos taurus;bos taurus
28;51
11;13
0.73;0.52
H_only
train
7jkb_A
7jkb
2xvh fab
no
immune system
2020-07-28
2020-11-25
x-ray diffraction
2.55
0.292
0.254
33172091
10.3390/antib9040062
0
auth_asym_id
FabH
IGHV3
N.A.
A
N.A.
EVQLLESGGGLVQPGGSLRLSCAASGFRISDEDMGWVRQAPGKGLEWVSSIYGPSGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASALEPLSEPLGFWGQGTLVTVSSGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
N.A.
EVQLLESGGGLVQPGGSLRLSCAASGFRISDEDMGWVRQAPGKGLEWVSSIYGPSGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASALEPLSEPLGFWGQGTLVTVSSGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
N.A.
20.959606
0
226
0
223
0
223
0
0
anti-lysozyme
N.A.
homo sapiens
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7jkb_B
7jkb
2xvh fab
no
immune system
2020-07-28
2020-11-25
x-ray diffraction
2.55
0.292
0.254
33172091
10.3390/antib9040062
0
auth_asym_id
FabH
IGHV3
N.A.
B
N.A.
QVQLVESGGGLIKPGGSLRLSCAASGFTVSYESMGWVRQAPGKGLEWVSAISSSGGSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCVTPERQCKQSTCYARPRYWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTHHHHHH
N.A.
QVQLVESGGGLIKPGGSLRLSCAASGFTVSYESMGWVRQAPGKGLEWVSAISSSGGSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCVTPERQCKQSTCYARPRYWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
N.A.
24.116024
0
239
0
226
0
226
0
0
anti-her2
N.A.
homo sapiens
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7jkt_H_L
7jkt
crystal structure of vaccine-elicited broadly neutralizing vrc01-class antibody 2413a in complex with hiv-1 gp120 core
no
viral protein/immune system
2020-07-28
2021-06-09
x-ray diffraction
2.75
0.252
0.197
33453152
10.1016/j.immuni.2020.12.014
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
H
L
QVQLVQSGPEVRAPGASVTVSCKTSGYSFTDFFIHWVRQAPGQGLEWMGWLNPIFGAVNYAHKYQGRITLTRDTSMKTAYMQLTNLRSDDTAVFYCVRKRVYDEYDWDWAYWGQGTLVTVSAASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCDKGLEVLFQ
EIVLTQSPGILSLSPGERATLSCRTSQDVGSNSLAWYQEKPGQAPRLLVYGASNRATGVPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQQYEYFGRGTKVQVDIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
QVQLVQSGPEVRAPGASVTVSCKTSGYSFTDFFIHWVRQAPGQGLEWMGWLNPIFGAVNYAHKYQGRITLTRDTSMKTAYMQLTNLRSDDTAVFYCVRKRVYDEYDWDWAYWGQGTLVTVSAASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCD
EIVLTQSPGILSLSPGERATLSCRTSQDVGSNSLAWYQEKPGQAPRLLVYGASNRATGVPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQQYEYFGRGTKVQVDIKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
24.350471
23.244286
233
213
225
212
225
212
92
heavy chain of antibody 2413a
light chain of antibody 2413a
mus musculus
mus musculus
G
protein
hiv-1 gp120 core from strain d45-01dg5
human immunodeficiency virus 1
55
13
0.54
HL
train
6zwk_A
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
A
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSA
N.A.
13.869861
0
150
0
127
0
127
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
G
peptide
histone h2ax
homo sapiens
12
6
0.86
H_only
train
6zwk_B
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSS
N.A.
13.766667
0
150
0
126
0
126
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
H
peptide
histone h2ax
homo sapiens
13
7
0.88
H_only
train
6zwk_C
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
C
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAA
N.A.
13.98954
0
150
0
128
0
128
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
I
peptide
histone h2ax
homo sapiens
13
7
0.88
H_only
train
6zwk_D
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
D
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSA
N.A.
13.842044
0
150
0
127
0
127
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
J
peptide
histone h2ax
homo sapiens
14
8
0.89
H_only
train
6zwk_E
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
E
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAA
N.A.
13.978349
0
150
0
128
0
128
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
K
peptide
histone h2ax
homo sapiens
12
6
0.86
H_only
train
6zwk_F
6zwk
crystal structure of the phosphorylated c-terminal tail of histone h2ax in complex with a specific nanobody (c6 gammaxbody)
yes
immune system
2020-07-28
2021-07-21
x-ray diffraction
1.55
0.184
0.149
34282773
10.3390/cancers13133317
0
auth_asym_id
VHH
IGHV3
N.A.
F
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAATSMFQDPQERPRASAHHHHHH
N.A.
TEVQLVESGGGLVQAGDSLRLSCAASGLTFSRYAMGWFRQAPGNEREFVAVITASGRTTLYADSVKGRFTISRDNAKNTVALQMQSLKPEDTAVYYCAADYGTSRYTRRQSEYEYWGQGTQVTVSSAAA
N.A.
14.10917
0
150
0
129
0
129
0
0
gammaxbody
N.A.
vicugna pacos
N.A.
L
peptide
histone h2ax
homo sapiens
12
6
0.86
H_only
train
7jkm_H_L
7jkm
regn1 human fab in complex with anti-kappa vhh domain
no
immune system
2020-07-28
2021-08-04
x-ray diffraction
1.78
0.21
0.182
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EVHLVESGGGLVQPGRSLRLSCAASGFTFDDYTMHWVRQAPGKGLEWVSDISWNSGSIGYADSVKGRFTVSRDNAKNSLYLQMNSLRGEDTAIYYCAKDMSGYGHYGKYGMDVWGQGTTVTVSSAATKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPCVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPA
DIQMTQSPILLSASVGDRVTITCRASQSIRSYLNWYQQRTNGSPRLLIYAASSLQSGVPSRFSGSGSGTDFTLTINSLQPDDEADYYCQQTYSNPPITFGAGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVHLVESGGGLVQPGRSLRLSCAASGFTFDDYTMHWVRQAPGKGLEWVSDISWNSGSIGYADSVKGRFTVSRDNAKNSLYLQMNSLRGEDTAIYYCAKDMSGYGHYGKYGMDVWGQGTTVTVSSAATKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPCVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPA
DIQMTQSPILLSASVGDRVTITCRASQSIRSYLNWYQQRTNGSPRLLIYAASSLQSGVPSRFSGSGSGTDFTLTINSLQPDDEADYYCQQTYSNPPITFGAGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.797798
22.740448
225
215
219
214
225
214
91
regn1 antibody heavy chain
regn1 antibody light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7jkm_K
7jkm
regn1 human fab in complex with anti-kappa vhh domain
no
immune system
2020-07-28
2021-08-04
x-ray diffraction
1.78
0.21
0.182
N.A.
N.A.
0
auth_asym_id
VHH
IGHV3
N.A.
K
N.A.
EVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVATARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSA
N.A.
EVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVATARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVS
N.A.
13.680876
0
121
0
120
0
120
0
0
anti-kappa vhh domain nanobody
N.A.
lama glama
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7cn2_M_m
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
M
m
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.185636
13.901476
120
110
120
110
120
110
46
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
A
protein
major capsid protein l1
human papillomavirus type 16
39
15
0.83
HL
train
7cn2_K_k
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
K
k
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.165953
13.911791
120
110
120
110
120
110
49
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
B;C
protein;protein
major capsid protein l1;major capsid protein l1
human papillomavirus type 16;human papillomavirus type 16
19;41
13;16
1.0;0.84
HL
train
7cn2_J_j
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
J
j
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.183993
13.904453
120
110
120
110
120
110
47
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
B;F
protein;protein
major capsid protein l1;major capsid protein l1
human papillomavirus type 16;human papillomavirus type 16
41;17
19;12
0.9;1.0
HL
train
7cn2_H_L
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
H
L
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.187233
13.905275
120
110
120
110
120
110
48
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
C;D
protein;protein
major capsid protein l1;major capsid protein l1
human papillomavirus type 16;human papillomavirus type 16
18;43
13;19
1.0;0.95
HL
train
7cn2_G_g
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
G
g
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.188543
13.911726
120
110
120
110
120
110
47
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
D;E
protein;protein
major capsid protein l1;major capsid protein l1
human papillomavirus type 16;human papillomavirus type 16
17;39
10;19
1.0;0.95
HL
train
7cn2_I_i
7cn2
subparticle refinement of human papillomavirus type 16 pesudovirus in complex with h16.001 fab
no
immune system/viral protein
2020-07-29
2020-09-02
electron microscopy
3.43
N.A.
N.A.
33042588
10.1038/s41541-020-00236-w
0
auth_asym_id
VH:VL
IGHV3
IGKV1
I
i
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
QSVKESEGRLVTPGTPLTLTCTASGFTMSRYHMTWVRQAPGKGLEWIGIIYARNSDTYYANWAKGRFTISKTSTTVDLKITSPTIEDTATYFCARVDSDSSGAFDRLDLWGQGTLVTVSS
DPMLTQTAASVEVAVGGTVTIKCQASQSIGGYLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTEYTLTFSGVECADAAAYYCQQGYTSSDINNAFGGGTEVVVK
14.185683
13.918016
120
110
120
110
120
110
49
the heavy chain variable region of h16.001 fab fragment
the light chain variable region of h16.001 fab fragment
oryctolagus cuniculus
oryctolagus cuniculus
E;F
protein;protein
major capsid protein l1;major capsid protein l1
human papillomavirus type 16;human papillomavirus type 16
19;46
12;19
1.0;0.86
HL
train
7cmu_E
7cmu
dopamine receptor d3r-gi-pramipexole complex
yes
membrane protein
2020-07-29
2021-03-10
electron microscopy
3
N.A.
N.A.
33548201
10.1016/j.molcel.2021.01.003
0
auth_asym_id
scFv
N.A.
N.A.
E
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELK
N.A.
VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
17.46556
0
248
0
231
0
246
0
0
scfv16
N.A.
mus musculus
N.A.
B;A
protein;protein
guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1
homo sapiens;homo sapiens
26;31
10;17
0.77;0.89
H_only
train
7jlk_A_B
7jlk
crystal structure of glvrc01 fab in complex with anti-idiotype iv1 scfv
no
immune system
2020-07-29
2021-03-31
x-ray diffraction
1.99
0.235
0.179
33951425
10.1016/j.celrep.2021.109084
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
A
B
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGKNSDYNWDFQHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQYEFFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGKNSDYNWDFQHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQYEFFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
23.012157
22.734436
233
210
226
210
227
210
102
glvrc01 heavy chain
glvrc01 light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7jlk_H_L
7jlk
crystal structure of glvrc01 fab in complex with anti-idiotype iv1 scfv
no
immune system
2020-07-29
2021-03-31
x-ray diffraction
1.99
0.235
0.179
33951425
10.1016/j.celrep.2021.109084
0
auth_asym_id
VH:VL
IGHV7
IGKV1
H
L
QIQLVQSGPELKKPGETVKISCKASGYTFTNYEINWVQQAPGKGLKLMGWINTYTGEPTSADDFKGRFAFSLETSASTAYLQINNLKNEDAATYFCARGDYYGSSSAWLPYWGQGTLVTVSAGSGSGHHHHHH
DIVMTQSQKFMSTSVGDRVSITCKASQNVRTAVAWYQQKPGQSPKALIFLASNRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCLQHWNYPLTFGGGTKLEIKGGGGSGGGGSGGGGS
QIQLVQSGPELKKPGETVKISCKASGYTFTNYEINWVQQAPGKGLKLMGWINTYTGEPTSADDFKGRFAFSLETSASTAYLQINNLKNEDAATYFCARGDYYGSSSAWLPYWGQGTLVTVSA
DIVMTQSQKFMSTSVGDRVSITCKASQNVRTAVAWYQQKPGQSPKALIFLASNRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCLQHWNYPLTFGGGTKLEIKGGGGS
14.084319
13.39153
133
122
122
112
122
112
44
iv1 heavy chain
iv1 light chain
mus musculus
mus musculus
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7jmp_H_L
7jmp
crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody cova2-39
no
viral protein/immune system
2020-08-02
2020-08-26
x-ray diffraction
1.71
0.209
0.177
33027617
10.1016/j.celrep.2020.108274
0
auth_asym_id
FabH:FabL
IGHV3
IGLV2
H
L
QVQLVETGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYTGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARAHVDTAMVESGAFDIWGQGTRVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCHHHHHH
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVTKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
VQLVETGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYTGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARAHVDTAMVESGAFDIWGQGTRVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
ALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVTKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
24.11313
21.043406
232
216
218
211
223
211
95
cova2-39 heavy chain
cova2-39 light chain
homo sapiens
homo sapiens
A
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
41
21
0.91
HL
train
7jmx_H_L
7jmx
crystal structure of a sars-cov-2 cross-neutralizing antibody cova1-16 fab
no
immune system
2020-08-03
2020-10-14
x-ray diffraction
2.53
0.244
0.211
33242394
10.1016/j.immuni.2020.10.023
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
H
L
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINSSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARPPRNYYDRSGYYQRAEYFQHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCHHHHHH
DIQLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQRPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNPPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINSSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARPPRNYYDRSGYYQRAEYFQHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
DIQLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQRPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNPPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
20.83079
23.13961
238
214
222
208
230
211
106
cova1-16 heavy chain
cova1-16 light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7jn5_H_L
7jn5
crystal structure of sars-cov receptor binding domain in complex with human antibody cr3022
no
viral protein/immune system
2020-08-03
2020-10-28
x-ray diffraction
2.71
0.272
0.211
33275640
10.1371/journal.ppat.1009089
0
auth_asym_id
FabH:FabL
IGHV5
IGKV4
H
L
QMQLVQSGTEVKKPGESLKISCKGSGYGFITYWIGWVRQMPGKGLEWMGIIYPGDSETRYSPSFQGQVTISADKSINTAYLQWSSLKASDTAIYYCAGGSGISTPMDVWGQGTTVTVVSRRLPPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
DIQLTQSPDSLAVSLGERATINCKSSQSVLYSSINKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
QMQLVQSGTEVKKPGESLKISCKGSGYGFITYWIGWVRQMPGKGLEWMGIIYPGDSETRYSPSFQGQVTISADKSINTAYLQWSSLKASDTAIYYCAGGSGISTPMDVWGQGTTVTVVSRRLPPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
DIQLTQSPDSLAVSLGERATINCKSSQSVLYSSINKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
21.526777
24.379353
221
221
221
220
221
220
110
cr3022 heavy chain
cr3022 light chain
homo sapiens
homo sapiens
F
protein
spike glycoprotein
human sars coronavirus
54
23
0.82
HL
train
7coe_H_L
7coe
crystal structure of receptor binding domain of mers-cov and knih90-f1 fab complex
no
immune system
2020-08-04
2021-08-04
x-ray diffraction
2.05
0.223
0.176
35075213
10.1038/s41598-022-05318-4
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
H
L
QVQLVQSGAEVKRPGSSVKVSCKTSGGTFNNNAINWVRQAPGQGLEWMGGIIPFFGIAKYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDLPRESSYGSGSYYTHYYAMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKRPGSSVKVSCKTSGGTFNNNAINWVRQAPGQGLEWMGGIIPFFGIAKYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDLPRESSYGSGSYYTHYYAMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.702612
22.69669
237
215
223
214
232
214
93
heavy chain
light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
middle east respiratory syndrome-related coronavirus
42
17
0.85
HL
train
7coe_B_C
7coe
crystal structure of receptor binding domain of mers-cov and knih90-f1 fab complex
no
immune system
2020-08-04
2021-08-04
x-ray diffraction
2.05
0.223
0.176
35075213
10.1038/s41598-022-05318-4
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
B
C
QVQLVQSGAEVKRPGSSVKVSCKTSGGTFNNNAINWVRQAPGQGLEWMGGIIPFFGIAKYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDLPRESSYGSGSYYTHYYAMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKRPGSSVKVSCKTSGGTFNNNAINWVRQAPGQGLEWMGGIIPFFGIAKYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARDLPRESSYGSGSYYTHYYAMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
23.294912
22.481491
237
215
225
213
232
213
106
heavy chain
light chain
homo sapiens
homo sapiens
D
protein
spike glycoprotein
middle east respiratory syndrome-related coronavirus
39
17
0.85
HL
train
7joo_H_L
7joo
crystal structure of icos in complex with antibody stim003 and anti-kappa vhh domain
no
immune system
2020-08-06
2020-10-14
x-ray diffraction
2.4
0.297
0.241
33033255
10.1038/s41467-020-18828-4
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
H
L
EVQLVESGGGVVRPGGSLRLSCVASGVTFDDYGMSWVRQAPGKGLEWVSGINWNGGDTDYSDSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCARDFYGSGSYYHVPFDYWGQGILVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
EIVLTQSPGTLSLSPGERATLSCRASQSVSRSYLAWYQQKRGQAPRLLIYGASSRATGIPDRFSGDGSGTDFTLSISRLEPEDFAVYYCHQYDMSPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGVVRPGGSLRLSCVASGVTFDDYGMSWVRQAPGKGLEWVSGINWNGGDTDYSDSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCARDFYGSGSYYHVPFDYWGQGILVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
EIVLTQSPGTLSLSPGERATLSCRASQSVSRSYLAWYQQKRGQAPRLLIYGASSRATGIPDRFSGDGSGTDFTLSISRLEPEDFAVYYCHQYDMSPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.62241
22.27772
227
215
218
213
224
213
98
stim003 fab heavy chain
stim003 fab light chain
homo sapiens
homo sapiens
C
protein
inducible t-cell costimulator
homo sapiens
41
20
0.83
HL
train
7jo8_A
7jo8
crystal structure of a chimeric antigen receptor (car) scfv domain rearrangement forming a vl-vl dimer
no
immune system
2020-08-06
2021-02-10
x-ray diffraction
1.4
0.171
0.155
N.A.
10.3390/cryst13040710
0
auth_asym_id
VL
N.A.
IGKV3
N.A.
A
N.A.
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSRFTFGPGTKVDIKGS
N.A.
IVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSRFTFGPGTKVDIK
0
13.021164
0
110
0
107
0
107
0
N.A.
47g4-cd828z
N.A.
synthetic construct
N.A.
N.A.
N.A.
N.A.
0
0
0
L_only
train
7jo8_B
7jo8
crystal structure of a chimeric antigen receptor (car) scfv domain rearrangement forming a vl-vl dimer
no
immune system
2020-08-06
2021-02-10
x-ray diffraction
1.4
0.171
0.155
N.A.
10.3390/cryst13040710
0
auth_asym_id
VL
N.A.
IGKV3
N.A.
B
N.A.
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSRFTFGPGTKVDIKGS
N.A.
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSRFTFGPGTKVDIKGS
0
13.285926
0
110
0
110
0
110
0
N.A.
47g4-cd828z
N.A.
synthetic construct
N.A.
N.A.
N.A.
N.A.
0
0
0
L_only
train
7cqc_H_L
7cqc
the nz-1 fab complexed with the pdz tandem fragment of a. aeolicus s2p homolog with the pa14 tag inserted between the residues 181 and 184
no
hydrolase/immune system
2020-08-10
2021-05-19
x-ray diffraction
2.5
0.258
0.23
33950020
10.1107/S2059798321002527
0
auth_asym_id
FabH:FabL
IGHV3
IGLV6
H
L
EVQLVESGGGLVQPGRSLKLSCAASGFTFSNYGMAWVRQTPTKGLEWIASISAGGDKTYYGDSVKGRFSISRDNAKTTHYLQMDSLRSEDTATYYCAKTSRVYFDYWGQGVMVTVSSAETTAPSVYPLAPGTALKSNSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIVPREC
QFVLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHSYSSGIVFGGGTKLTVLGQPKSTPTLTVFPPSTEELQGNKATLVCLISDFYPSDVEVAWKANGAPISQGVDTANPTKQGNKYIASSFLRLTAEQWRSRNSFTCQVTHEGNTVEKSLSPAECV
EVQLVESGGGLVQPGRSLKLSCAASGFTFSNYGMAWVRQTPTKGLEWIASISAGGDKTYYGDSVKGRFSISRDNAKTTHYLQMDSLRSEDTATYYCAKTSRVYFDYWGQGVMVTVSSAETTAPSVYPLAPGTALKSNSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIVPREC
FVLTQPNSVSTNLGSTVKLSCKRSTGNIGSNYVNWYQQHEGRSPTTMIYRDDKRPDGVPDRFSGSIDRSSNSALLTINNVQTEDEADYFCHSYSSGIVFGGGTKLTVLGQPKSTPTLTVFPPSTEELQGNKATLVCLISDFYPSDVEVAWKANGAPISQGVDTANPTKQGNKYIASSFLRLTAEQWRSRNSFTCQVTHEGNTVEKSLSPAECV
20.507595
23.987103
219
214
212
213
219
213
92
heavy chain of antigen binding fragment, fab of nz-1
light chain of antigen binding fragment, fab of nz-1
rattus norvegicus
rattus norvegicus
A
protein
putative zinc metalloprotease aq_1964,pa14 from podoplanin,putative zinc metalloprotease aq_1964
aquifex aeolicus vf5
52
21
0.66
HL
train
7a0v_B
7a0v
crystal structure of the 5-phosphatase domain of synaptojanin1 in complex with a nanobody
no
hydrolase
2020-08-11
2020-12-30
x-ray diffraction
2.3
0.252
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSH
N.A.
13.83686
0
132
0
123
0
123
0
0
nanobody 13015
N.A.
lama glama
N.A.
A
protein
synaptojanin-1
homo sapiens
32
13
1
H_only
train
7a0v_D
7a0v
crystal structure of the 5-phosphatase domain of synaptojanin1 in complex with a nanobody
no
hydrolase
2020-08-11
2020-12-30
x-ray diffraction
2.3
0.252
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
D
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHH
N.A.
14.134789
0
132
0
125
0
125
0
0
nanobody 13015
N.A.
lama glama
N.A.
C
protein
synaptojanin-1
homo sapiens
28
10
0.91
H_only
train
7a0v_F
7a0v
crystal structure of the 5-phosphatase domain of synaptojanin1 in complex with a nanobody
no
hydrolase
2020-08-11
2020-12-30
x-ray diffraction
2.3
0.252
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
F
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHH
N.A.
14.005776
0
132
0
124
0
124
0
0
nanobody 13015
N.A.
lama glama
N.A.
E
protein
synaptojanin-1
homo sapiens
28
11
1
H_only
train
7jr7_C_D
7jr7
cryo-em structure of abcg5/g8 in complex with fab 2e10 and 11f4
no
translocase/immune system
2020-08-11
2021-04-07
electron microscopy
3.3
N.A.
N.A.
N.A.
10.1038/s42003-021-02039-8
0
auth_asym_id
FabH:FabL
IGHV4
IGKV1
C
D
DVQLQESGPGLVKPSQSLSLTCTITGYSITSDYAWNWIRQFPGNKLEWMGYISYSGTTYYNPSLKSRFSITRDTSRNQFFLQFNSVTTEDTGTYFCARMITTVYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
QIVLTQSPTIMSASLGERVTMTCTASSSASSSYLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISNMEAEDAATYYCHQHHRSPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTATLTKDEYERHNSYTCEATHKTSTSPIVKSFNRA
DVQLQESGPGLVKPSQSLSLTCTITGYSITSDYAWNWIRQFPGNKLEWMGYISYSGTTYYNPSLKSRFSITRDTSRNQFFLQFNSVTTEDTGTYFCARMITTVYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
QIVLTQSPTIMSASLGERVTMTCTASSSASSSYLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISNMEAEDAATYYCHQHHRSPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTATLTKDEYERHNSYTCEATHKTSTSPIVKSFNRA
21.765768
23.344975
220
213
210
213
220
213
95
fab 11f4 heavy chain
fab 11f4 light chain
homo sapiens
homo sapiens
B
protein
atp-binding cassette sub-family g member 8
homo sapiens
47
20
0.77
HL
train
7jr7_E_F
7jr7
cryo-em structure of abcg5/g8 in complex with fab 2e10 and 11f4
no
translocase/immune system
2020-08-11
2021-04-07
electron microscopy
3.3
N.A.
N.A.
N.A.
10.1038/s42003-021-02039-8
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
E
F
QVHLQQSGAELVRPGTSVKMSCKAAGYTFTYWWIGWLKQRPGHGLEWIGDFFPVSGHTNFNEKFRDKATLTADTSSSTAYMQLNSLTSEDSAIYYCARKQDSSGPLYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
DIQMTQSSSYLSVSLGGRVTITCKASDHINNWLAWYQQKPGNAPRLLISAATSLETGVPSRFSGSGSGKDYTLSIISLQTEDVATYYCQQYWSTPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSTTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRA
QVHLQQSGAELVRPGTSVKMSCKAAGYTFTYWWIGWLKQRPGHGLEWIGDFFPVSGHTNFNEKFRDKATLTADTSSSTAYMQLNSLTSEDSAIYYCARKQDSSGPLYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
DIQMTQSSSYLSVSLGGRVTITCKASDHINNWLAWYQQKPGNAPRLLISAATSLETGVPSRFSGSGSGKDYTLSIISLQTEDVATYYCQQYWSTPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSTTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRA
23.21144
23.147661
223
212
218
212
223
212
93
fab 2e10 heavy chain
fab 2e10 light chain
homo sapiens
homo sapiens
B
protein
atp-binding cassette sub-family g member 8
homo sapiens
40
17
0.85
HL
train
7a0w_C_D
7a0w
structure of dimeric sodium proton antiporter nhaa, at ph 8.5, crystallized with chimeric fab antibodies
no
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.04
0.235
0.198
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
C
D
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNR
20.46335
22.261068
252
210
213
207
223
207
102
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
A
protein
na(+)/h(+) antiporter nhaa
salmonella enterica subsp. enterica serovar typhimurium str. lt2
51
20
0.77
HL
train
7a0w_E_F
7a0w
structure of dimeric sodium proton antiporter nhaa, at ph 8.5, crystallized with chimeric fab antibodies
no
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.04
0.235
0.198
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
E
F
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGE
22.687998
22.225237
252
210
223
209
223
209
116
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
B
protein
na(+)/h(+) antiporter nhaa
salmonella enterica subsp. enterica serovar typhimurium str. lt2
52
23
0.79
HL
train
7a0x_C_D
7a0x
structure of dimeric sodium proton antiporter nhaa, at ph 6.0, crystallized with chimeric fab antibodies
no
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.37
0.241
0.205
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
C
D
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKV
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNR
20.358524
22.391134
252
210
210
207
220
207
95
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
A
protein
na(+)/h(+) antiporter nhaa
salmonella typhimurium (strain lt2 / sgsc1412 / atcc 700720)
54
23
0.79
HL
train
7a0x_E_F
7a0x
structure of dimeric sodium proton antiporter nhaa, at ph 6.0, crystallized with chimeric fab antibodies
no
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.37
0.241
0.205
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
E
F
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGE
22.70142
22.196415
252
210
223
209
223
209
112
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
B
protein
na(+)/h(+) antiporter nhaa
salmonella typhimurium (strain lt2 / sgsc1412 / atcc 700720)
50
21
0.78
HL
train
7a0y_C_D
7a0y
structure of dimeric sodium proton antiporter nhaa k300r variant, at ph 8.2, crystallized with chimeric fab antibodies
yes
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.45
0.241
0.203
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
C
D
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNR
20.385086
22.237198
252
210
213
207
223
207
96
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
A
protein
na(+)/h(+) antiporter nhaa
salmonella enterica subsp. enterica serovar typhimurium str. lt2
50
21
0.78
HL
train
7a0y_E_F
7a0y
structure of dimeric sodium proton antiporter nhaa k300r variant, at ph 8.2, crystallized with chimeric fab antibodies
yes
membrane protein
2020-08-11
2022-02-23
x-ray diffraction
2.45
0.241
0.203
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
E
F
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTSGQAGQHHHHHHGAYPYDVPDYAS
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGEC
AVTLDESGGGLQTPGGGLSLVCKASGFTFSDYGMGWVRQAPDKGLEWVAGIYTTGSGTRYGAAVKGRATISRDNGQSTVRLQLNNLRAEDTGTYYCAKSTGRDYYGGGIDAWGHGTEVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
ALTQPSSVSANPGGTVKITCSGGTYSYGWFQQKSPGSAPVTVIYWNDKRPSNIPSRFSGSKSGSTHTLTITGVRAEDEAVYFCGSADSSGTAIFGAGTTLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSLPVTKSFNRGE
22.627338
22.135893
252
210
223
209
223
209
119
chimeric antibody fab-f6, heavy chain,chimeric antibody fab-f6, heavy chain
chimeric antibody fab-f6, light chain,chimeric antibody fab-f6, light chain
gallus gallus
gallus gallus
B
protein
na(+)/h(+) antiporter nhaa
salmonella enterica subsp. enterica serovar typhimurium str. lt2
54
23
0.79
HL
train
7a17_B
7a17
crystal structure of the 5-phosphatase domain of synaptojanin1 bound to its substrate dic8-pi(3,4,5)p3 in complex with a nanobody
no
hydrolase
2020-08-12
2020-12-30
x-ray diffraction
2.73
0.257
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVT
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVT
N.A.
13.42508
0
119
0
119
0
119
0
0
nanobody 13015
N.A.
lama glama
N.A.
A
protein
isoform 2 of synaptojanin-1
homo sapiens
31
14
1
H_only
train
7a17_D
7a17
crystal structure of the 5-phosphatase domain of synaptojanin1 bound to its substrate dic8-pi(3,4,5)p3 in complex with a nanobody
no
hydrolase
2020-08-12
2020-12-30
x-ray diffraction
2.73
0.257
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
D
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSH
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSH
N.A.
13.824237
0
123
0
123
0
123
0
0
nanobody 13015
N.A.
lama glama
N.A.
C
protein
isoform 2 of synaptojanin-1
homo sapiens
28
10
1
H_only
train
7a17_F
7a17
crystal structure of the 5-phosphatase domain of synaptojanin1 bound to its substrate dic8-pi(3,4,5)p3 in complex with a nanobody
no
hydrolase
2020-08-12
2020-12-30
x-ray diffraction
2.73
0.257
0.196
33349335
10.7554/eLife.64922
0
auth_asym_id
VHH
IGHV3
N.A.
F
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHH
N.A.
QVQLVESGGGFAQAGGSLRLSCAASGSTFRFRAMGWFRQAPGKEREFVAGISWSGSTKYTDSVKGRFTISRDNAKNTVHLQMNNLTPEDTAVYYCAQSRAIEADDSRGYDYWGQGTQVTVSSHHH
N.A.
14.11947
0
125
0
125
0
125
0
0
nanobody 13015
N.A.
lama glama
N.A.
E
protein
isoform 2 of synaptojanin-1
homo sapiens
29
10
1
H_only
train
7cr5_H_L
7cr5
complex structure of a human monoclonal antibody with sars-cov-2 nucleocapsid protein ntd
no
viral protein/immune system
2020-08-12
2021-03-24
x-ray diffraction
2.08
0.222
0.191
33976229
10.1038/s41467-021-23036-9
0
auth_asym_id
FabH:FabL
IGHV3
IGLV4
H
L
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYIMHWVRQAPGKGLEWVAVISYDGSNEAYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTGVYYCARETGDYSSSWYDSWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
QLVLTQSPSASASLGASVKLTCTLSSGHSNYAIAWHQQQPEKGPRYLMKVNSDGSHTKGDGIPDRFSGSSSGAERYLTISSLQSEDEADYYCQTWGTGIQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYIMHWVRQAPGKGLEWVAVISYDGSNEAYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTGVYYCARETGDYSSSWYDSWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
QLVLTQSPSASASLGASVKLTCTLSSGHSNYAIAWHQQQPEKGPRYLMKVNSDGSHTKGDGIPDRFSGSSSGAERYLTISSLQSEDEADYYCQTWGTGIQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP
20.638645
23.938036
226
217
216
213
222
213
89
monoclonal antibody chain h
monoclonal antibody chain l
homo sapiens
homo sapiens
A
protein
nucleoprotein
severe acute respiratory syndrome coronavirus 2
62
29
0.81
HL
train
7a29_D
7a29
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23) 2-up conformation
no
viral protein
2020-08-16
2020-10-21
electron microscopy
2.94
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
D
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
13.78819
0
114
0
114
0
114
0
0
neutralising sybody (sb23)
N.A.
synthetic construct
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
34
5
0.33
H_only
train
7a29_E
7a29
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23) 2-up conformation
no
viral protein
2020-08-16
2020-10-21
electron microscopy
2.94
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
E
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
13.73685
0
114
0
114
0
114
0
0
neutralising sybody (sb23)
N.A.
synthetic construct
N.A.
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
34
7
0.39
H_only
train
7a29_F
7a29
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23) 2-up conformation
no
viral protein
2020-08-16
2020-10-21
electron microscopy
2.94
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
F
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
13.775849
0
114
0
114
0
114
0
0
neutralising sybody (sb23)
N.A.
synthetic construct
N.A.
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
38
7
0.37
H_only
train
7a25_D
7a25
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23)
no
viral protein
2020-08-16
2020-11-25
electron microscopy
3.06
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
D
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
14.028397
0
114
0
114
0
114
0
0
sybody 23
N.A.
synthetic construct
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
38
7
0.37
H_only
train
7a25_E
7a25
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23)
no
viral protein
2020-08-16
2020-11-25
electron microscopy
3.06
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
E
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
14.028405
0
114
0
114
0
114
0
0
sybody 23
N.A.
synthetic construct
N.A.
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
33
6
0.33
H_only
train
7a25_F
7a25
cryo-em structure of the sars-cov-2 spike protein bound to neutralizing sybodies (sb23)
no
viral protein
2020-08-16
2020-11-25
electron microscopy
3.06
N.A.
N.A.
33149112
10.1038/s41467-020-19204-y
0
auth_asym_id
VH
IGHV3
N.A.
F
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
QVQLVESGGGLVQAGGSLRLSCAASGFPVESENMHWYRQAPGKEREWVAAIYSTGGWTLYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVQVGYWYEGQGTQVTVS
N.A.
14.028399
0
114
0
114
0
114
0
0
sybody 23
N.A.
synthetic construct
N.A.
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
36
5
0.29
H_only
train
7jti_H_L
7jti
interphotoreceptor retinoid-binding protein (irbp) in complex with a monoclonal antibody (f3f5 mab5)
no
transport protein/immune system
2020-08-17
2020-10-07
electron microscopy
7.4
N.A.
N.A.
32860273
10.1096/fj.202000796RR
0
auth_asym_id
FabH:FabL
IGHV4
IGLV7
H
L
QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
22.400045
23.547493
221
210
221
210
221
210
95
mab5 fab heavy chain
mab5 fab light chain
mus musculus
mus musculus
A
protein
retinol-binding protein 3
bos taurus
46
24
0.96
HL
train
7jtf_A_B
7jtf
structure of hepatitis c virus envelope glycoprotein e2 core from genotype 6a bound to broadly neutralizing antibody rm2-01
yes
immune system/viral protein
2020-08-17
2021-03-10
x-ray diffraction
3.35
0.296
0.242
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
A
B
QVQLVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIVPLGGITNYAQNFQGRAAITADTSINTAYMELSSLRSDDTAVYYCARVRTALVGPREGIFDFWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGS
DIQMTQSPSSLSASVGDRVSITCRASQTISTYLAWYQQKPGKVPKLLIYTASTLETGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQHDSHPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
LVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIVPLGGITNYAQNFQGRAAITADTSINTAYMELSSLRSDDTAVYYCARVRTALVGPREGIFDFWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
IQMTQSPSSLSASVGDRVSITCRASQTISTYLAWYQQKPGKVPKLLIYTASTLETGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQHDSHPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.197933
22.913485
229
214
211
206
222
211
98
rm2-01 fab heavy chain
rm2-01 fab light chain
macaca mulatta
macaca mulatta
E
protein
envelope glycoprotein e2
recombinant hepatitis c virus hk6a/jfh-1
25
13
1
HL
train
7jtf_C_D
7jtf
structure of hepatitis c virus envelope glycoprotein e2 core from genotype 6a bound to broadly neutralizing antibody rm2-01
yes
immune system/viral protein
2020-08-17
2021-03-10
x-ray diffraction
3.35
0.296
0.242
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
C
D
QVQLVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIVPLGGITNYAQNFQGRAAITADTSINTAYMELSSLRSDDTAVYYCARVRTALVGPREGIFDFWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGS
DIQMTQSPSSLSASVGDRVSITCRASQTISTYLAWYQQKPGKVPKLLIYTASTLETGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQHDSHPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
LVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIVPLGGITNYAQNFQGRAAITADTSINTAYMELSSLRSDDTAVYYCARVRTALVGPREGIFDFWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
IQMTQSPSSLSASVGDRVSITCRASQTISTYLAWYQQKPGKVPKLLIYTASTLETGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQHDSHPYSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.433418
22.731764
229
214
212
211
222
211
101
rm2-01 fab heavy chain
rm2-01 fab light chain
macaca mulatta
macaca mulatta
F
protein
envelope glycoprotein e2
recombinant hepatitis c virus hk6a/jfh-1
27
13
0.93
HL
train
7jtg_A_B
7jtg
structure of hepatitis c virus envelope glycoprotein e2 core from genotype 6a bound to broadly neutralizing antibody rm11-43
yes
immune system/viral protein
2020-08-17
2021-03-10
x-ray diffraction
2.6
0.269
0.222
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
A
B
QVQLVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIIPLGGITNYAQKFQGRVTITADTSTSTAYMELSSLRSEDTAVYYCARGETKMITVLAGTTGGGLDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGS
DIQMTQSPSSLSASVGDKVTITCHASQGISSWLAWYQQKPGKAPKPLIYAASSLQSGVPSRFSGGGSGADYTLTISSLQPEDFATYYCQQYDDLPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVQSGAEVKKPGASVKLSCKASGFTFRIYAISWVRQAPGQGLEWMGEIIPLGGITNYAQKFQGRVTITADTSTSTAYMELSSLRSEDTAVYYCARGETKMITVLAGTTGGGLDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
DIQMTQSPSSLSASVGDKVTITCHASQGISSWLAWYQQKPGKAPKPLIYAASSLQSGVPSRFSGGGSGADYTLTISSLQPEDFATYYCQQYDDLPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
22.765972
22.893106
233
214
224
212
229
212
95
rm11-43 fab heavy chain
rm11-43 fab light chain
macaca mulatta
macaca mulatta
E
protein
envelope glycoprotein e2
recombinant hepatitis c virus hk6a/jfh-1
41
19
0.95
HL
train
7jtr_B
7jtr
complex of maltose-binding protein (mbp) with single-chain fv (scfv)
yes
sugar binding protein/immune system
2020-08-18
2021-05-05
x-ray diffraction
2.5
0.237
0.201
33896065
10.1002/pro.4088
0
auth_asym_id
scFv
N.A.
N.A.
B
N.A.
MQVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKREHHHHHH
N.A.
QVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIK
N.A.
17.530422
0
251
0
225
0
242
0
0
single-chain fv antibody fragment (scfv)
N.A.
mus musculus
N.A.
A
protein
maltose/maltodextrin-binding periplasmic protein
escherichia coli
44
21
0.81
H_only
train
7jtr_D
7jtr
complex of maltose-binding protein (mbp) with single-chain fv (scfv)
yes
sugar binding protein/immune system
2020-08-18
2021-05-05
x-ray diffraction
2.5
0.237
0.201
33896065
10.1002/pro.4088
0
auth_asym_id
scFv
N.A.
N.A.
D
N.A.
MQVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKREHHHHHH
N.A.
QVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIK
N.A.
17.459934
0
251
0
223
0
242
0
0
single-chain fv antibody fragment (scfv)
N.A.
mus musculus
N.A.
C
protein
maltose/maltodextrin-binding periplasmic protein
escherichia coli
37
17
0.77
H_only
train
7jtr_F
7jtr
complex of maltose-binding protein (mbp) with single-chain fv (scfv)
yes
sugar binding protein/immune system
2020-08-18
2021-05-05
x-ray diffraction
2.5
0.237
0.201
33896065
10.1002/pro.4088
0
auth_asym_id
scFv
N.A.
N.A.
F
N.A.
MQVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKREHHHHHH
N.A.
QVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKR
N.A.
17.578371
0
251
0
224
0
243
0
0
single-chain fv antibody fragment (scfv)
N.A.
mus musculus
N.A.
E
protein
maltose/maltodextrin-binding periplasmic protein
escherichia coli
40
19
0.76
H_only
train
7jtr_H
7jtr
complex of maltose-binding protein (mbp) with single-chain fv (scfv)
yes
sugar binding protein/immune system
2020-08-18
2021-05-05
x-ray diffraction
2.5
0.237
0.201
33896065
10.1002/pro.4088
0
auth_asym_id
scFv
N.A.
N.A.
H
N.A.
MQVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKREHHHHHH
N.A.
QVQLQQPGSELVRPGASVKLSCKASGYTFTNSWMHWVKQRPGQGLEWIGNIFPGNGNTNYDENFKSKATLTVDTSSNTAYMQLSSLTSEDSAVYYCTRGLFAYWGQGTLVTVSAGGGGSGGGGSGGGGSDIVMTQSPSSLAMSVGQKVTMSCKSSQSLLINNNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHFTAPYTFGGGTKLEIKR
N.A.
17.545332
0
251
0
224
0
243
0
0
single-chain fv antibody fragment (scfv)
N.A.
mus musculus
N.A.
G
protein
maltose/maltodextrin-binding periplasmic protein
escherichia coli
40
18
0.78
H_only
train
7a3n_H_L
7a3n
crystal structure of zika virus envelope glycoprotein in complex with the fab fragment of the broadly neutralizing human antibody ede1 c10
no
viral protein
2020-08-18
2021-12-08
x-ray diffraction
2.1
0.24
0.203
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
FabH:FabL
IGHV1
IGLV2
H
L
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
SQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
ALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV
23.363752
20.692812
268
217
219
207
228
208
97
ede1 c10 fab
ede1 c10 fab
homo sapiens
homo sapiens
A
protein
core protein
zika virus
44
16
0.89
HL
train
7a3o_H_L
7a3o
crystal structure of dengue 1 virus envelope glycoprotein in complex with the scfv fragment of the broadly neutralizing human antibody ede1 c10
no
viral protein
2020-08-18
2021-12-08
x-ray diffraction
2.8
0.268
0.218
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
VH:VL
IGHV1
IGLV2
H
L
MAEVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSGTGGSGGGGSGGGG
SGGGASQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLAAADDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVS
ALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLAA
14.292597
13.413153
144
154
127
110
127
110
55
single chain variable fragment (scfv) from antibody ede1 c10
single chain variable fragment (scfv) from antibody ede1 c10
homo sapiens
homo sapiens
A
protein
core protein
dengue virus 1
28
13
0.87
HL
train
7a3p_H_L
7a3p
crystal structure of dengue 3 virus envelope glycoprotein in complex with the scfv fragment of the broadly neutralizing human antibody ede1 c10
no
viral protein
2020-08-18
2021-12-08
x-ray diffraction
3.19
0.284
0.24
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
VH:VL
IGHV1
IGLV2
H
L
MAEVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSGTGGSGGGGSGGGG
SGGGASQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLAAADDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
VQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTV
SALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVL
14.157737
13.187047
144
154
125
109
125
109
51
single chain variable fragment
single chain variable fragment
homo sapiens
homo sapiens
A;B
protein;protein
envelope protein e;envelope protein e
dengue virus 3;dengue virus 3
41;36
18;11
0.95;0.79
HL
train
7a3p_I_M
7a3p
crystal structure of dengue 3 virus envelope glycoprotein in complex with the scfv fragment of the broadly neutralizing human antibody ede1 c10
no
viral protein
2020-08-18
2021-12-08
x-ray diffraction
3.19
0.284
0.24
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
VH:VL
IGHV1
IGLV2
I
M
MAEVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSGTGGSGGGGSGGGG
SGGGASQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLAAADDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTV
SQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVL
14.141165
13.24507
144
154
126
111
126
111
53
single chain variable fragment
single chain variable fragment
homo sapiens
homo sapiens
A;B
protein;protein
envelope protein e;envelope protein e
dengue virus 3;dengue virus 3
25;43
8;19
0.89;0.9
HL
train
7a3t_H_L
7a3t
crystal structure of dengue 3 virus envelope glycoprotein in complex with the fab fragment of the broadly neutralizing human antibody ede1 c8
yes
viral protein
2020-08-18
2021-12-08
x-ray diffraction
2.65
0.254
0.207
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
H
L
EVQLVESGGGLVQPGGSLRLSCSASGFTFSTYSMHWVRQAPGKGLEYVSAITGEGDSAFYADSVKGRFTISRDNSKNTLYFEMNSLRPEDTAVYYCVGGYSNFYYYYTMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPLEDDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
RSEIVLTQSPATLSLSPGERATLSCRASQSISTFLAWYQHKPGQAPRLLIYDASTRATGVPARFSGSRSGTDFTLTISTLEPEDFAVYYCQQRYNWPPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCSASGFTFSTYSMHWVRQAPGKGLEYVSAITGEGDSAFYADSVKGRFTISRDNSKNTLYFEMNSLRPEDTAVYYCVGGYSNFYYYYTMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP
SEIVLTQSPATLSLSPGERATLSCRASQSISTFLAWYQHKPGQAPRLLIYDASTRATGVPARFSGSRSGTDFTLTISTLEPEDFAVYYCQQRYNWPPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.837755
22.846092
272
217
219
215
222
215
95
ede1 c8 antibody fab fragment
ede1 c8 antibody fab fragment
homo sapiens
homo sapiens
A
protein
core protein
dengue virus 3
11
5
0.83
HL
train
7a3u_H_L
7a3u
crystal structure of zika virus envelope glycoprotein in complex with the divalent f(ab')2 fragment of the broadly neutralizing human antibody ede1 c10
no
viral protein
2020-08-18
2021-12-08
x-ray diffraction
3
0.273
0.224
34852239
10.1016/j.cell.2021.11.010
0
auth_asym_id
FabH:FabL
IGHV1
IGLV2
H
L
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPPCPPLEDDDDKAGWSHPQFEKGGGS
SQSALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
EVQLVESGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQDRVTITRDTSASTAYMELSSLRSEDTAIYYCARDKVDDYGDYWFPTLWYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
ALTQPASVSGSPGQSITISCTGTSSDVGGFNYVSWFQQHPGKAPKLMLYDVTSRPSGVSSRFSGSKSGNTASLTISGLQAEDEADYYCSSHTSRGTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTEC
24.108086
21.05614
266
217
224
204
231
213
103
ede1 c10 antibody divalent f(ab')2 fragment
ede1 c10 divalent f(ab')2 fragment
homo sapiens
homo sapiens
A
protein
envelope protein
zika virus
49
18
0.82
HL
train
7a4d_A
7a4d
crystal structure of the aph coiled-coil in complex with nanobodies nb28 and nb30
no
de novo protein
2020-08-19
2021-05-05
x-ray diffraction
2.69
0.223
0.176
33893235
10.1073/pnas.2021899118
0
auth_asym_id
VHH
IGHV3
N.A.
A
N.A.
QVQLQESGGGLVQPGGSLRLSCAAPGFRLDNYVIGWFRQAPGKEREGVSCISSSAGSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATACYSSYVTYWGQGTQVTVSSGRYPYDVPDYGSGRA
N.A.
QLQESGGGLVQPGGSLRLSCAAPGFRLDNYVIGWFRQAPGKEREGVSCISSSAGSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATACYSSYVTYWGQGTQVTVSSGR
N.A.
13.639749
0
133
0
118
0
118
0
0
nanobody nb28
N.A.
lama glama
N.A.
E
peptide
aph coiled-coil
synthetic construct
36
10
0.43
H_only
train