pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 365
values | r_factor stringclasses 358
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values | abangle stringlengths 40 40 ⌀ | annotation_H stringlengths 44 44 ⌀ | annotation_L stringlengths 44 44 ⌀ | imgt_H stringlengths 37 37 ⌀ | imgt_L stringlengths 37 37 ⌀ | sequence_raw stringlengths 41 41 | sequence_H stringlengths 41 41 ⌀ | sequence_L stringlengths 41 41 ⌀ | structure stringlengths 38 38 | structure_chothia stringlengths 46 46 | in_nr_set bool 2
classes | curated_quality_dataset bool 2
classes | split stringclasses 3
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8yaf | I | null | 0 | H | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_I_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_I_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_I_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | J | null | 0 | H | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_J_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_J_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_J_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | M | null | 0 | L | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_M_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_M_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_M_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | N | null | 0 | L | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_N_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_N_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_N_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | Q | null | 0 | P | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_Q_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_Q_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_Q_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | R | null | 0 | P | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_R_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_R_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_R_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yaf | U | null | 0 | T | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_U_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_U_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_U_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | test |
8yaf | V | null | 0 | T | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 05/21/25 | SOD1, Nanobody1 and Nanobody2 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.28 | X-RAY DIFFRACTION | 0.249 | 0.2 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yaf/annotation/8yaf_V_VH.ann | null | sabdab_dataset/8yaf/imgt/8yaf_V_H.ann | null | sabdab_dataset/8yaf/sequence/8yaf_raw.pdb | sabdab_dataset/8yaf/sequence/8yaf_V_VH.fa | null | sabdab_dataset/8yaf/structure/8yaf.pdb | sabdab_dataset/8yaf/structure/chothia/8yaf.pdb | true | false | train |
8yat | B | null | 0 | A | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_B_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_B_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_B_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | true | train |
8yat | C | null | 0 | A | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_C_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_C_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_C_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | D | null | 0 | A | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_D_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_D_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_D_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | test |
8yat | F | null | 0 | E | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_F_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_F_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_F_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | G | null | 0 | E | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_G_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_G_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_G_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | H | null | 0 | E | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_H_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_H_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_H_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | J | null | 0 | I | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_J_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_J_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_J_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | K | null | 0 | I | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_K_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_K_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_K_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | test |
8yat | L | null | 0 | I | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_L_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_L_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_L_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | N | null | 0 | M | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_N_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_N_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_N_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | O | null | 0 | M | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_O_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_O_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_O_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8yat | P | null | 0 | M | protein | null | superoxide dismutase [cu-zn] | OXIDOREDUCTASE/IMMUNE SYSTEM | 02/12/25 | SOD1, Nanobody1, Nanobody2 and Nanobody3 complex | Camelus dromedarius; Homo sapiens; Vicugna pacos | camelus dromedarius | null | homo sapiens | Cheng, S. | 3.94 | X-RAY DIFFRACTION | 0.368 | 0.303 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yat/annotation/8yat_P_VH.ann | null | sabdab_dataset/8yat/imgt/8yat_P_H.ann | null | sabdab_dataset/8yat/sequence/8yat_raw.pdb | sabdab_dataset/8yat/sequence/8yat_P_VH.fa | null | sabdab_dataset/8yat/structure/8yat.pdb | sabdab_dataset/8yat/structure/chothia/8yat.pdb | true | false | train |
8ybl | B | null | 0 | A | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb3 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 2.33 | X-RAY DIFFRACTION | 0.262 | 0.223 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybl/annotation/8ybl_B_VH.ann | null | sabdab_dataset/8ybl/imgt/8ybl_B_H.ann | null | sabdab_dataset/8ybl/sequence/8ybl_raw.pdb | sabdab_dataset/8ybl/sequence/8ybl_B_VH.fa | null | sabdab_dataset/8ybl/structure/8ybl.pdb | sabdab_dataset/8ybl/structure/chothia/8ybl.pdb | true | true | train |
8ybm | B | null | 0 | A | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb6 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 2.04 | X-RAY DIFFRACTION | 0.259 | 0.213 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybm/annotation/8ybm_B_VH.ann | null | sabdab_dataset/8ybm/imgt/8ybm_B_H.ann | null | sabdab_dataset/8ybm/sequence/8ybm_raw.pdb | sabdab_dataset/8ybm/sequence/8ybm_B_VH.fa | null | sabdab_dataset/8ybm/structure/8ybm.pdb | sabdab_dataset/8ybm/structure/chothia/8ybm.pdb | true | true | train |
8ybm | D | null | 0 | C | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb6 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 2.04 | X-RAY DIFFRACTION | 0.259 | 0.213 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybm/annotation/8ybm_D_VH.ann | null | sabdab_dataset/8ybm/imgt/8ybm_D_H.ann | null | sabdab_dataset/8ybm/sequence/8ybm_raw.pdb | sabdab_dataset/8ybm/sequence/8ybm_D_VH.fa | null | sabdab_dataset/8ybm/structure/8ybm.pdb | sabdab_dataset/8ybm/structure/chothia/8ybm.pdb | true | false | train |
8ybn | B | null | 0 | A | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb8 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 2.18 | X-RAY DIFFRACTION | 0.281 | 0.232 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybn/annotation/8ybn_B_VH.ann | null | sabdab_dataset/8ybn/imgt/8ybn_B_H.ann | null | sabdab_dataset/8ybn/sequence/8ybn_raw.pdb | sabdab_dataset/8ybn/sequence/8ybn_B_VH.fa | null | sabdab_dataset/8ybn/structure/8ybn.pdb | sabdab_dataset/8ybn/structure/chothia/8ybn.pdb | true | true | validation |
8ybo | B | null | 0 | A | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb11 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 1.59 | X-RAY DIFFRACTION | 0.284 | 0.261 | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybo/annotation/8ybo_B_VH.ann | null | sabdab_dataset/8ybo/imgt/8ybo_B_H.ann | null | sabdab_dataset/8ybo/sequence/8ybo_raw.pdb | sabdab_dataset/8ybo/sequence/8ybo_B_VH.fa | null | sabdab_dataset/8ybo/structure/8ybo.pdb | sabdab_dataset/8ybo/structure/chothia/8ybo.pdb | true | true | train |
8ybo | D | null | 0 | C | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb11 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 1.59 | X-RAY DIFFRACTION | 0.284 | 0.261 | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybo/annotation/8ybo_D_VH.ann | null | sabdab_dataset/8ybo/imgt/8ybo_D_H.ann | null | sabdab_dataset/8ybo/sequence/8ybo_raw.pdb | sabdab_dataset/8ybo/sequence/8ybo_D_VH.fa | null | sabdab_dataset/8ybo/structure/8ybo.pdb | sabdab_dataset/8ybo/structure/chothia/8ybo.pdb | true | false | train |
8ybp | B | null | 0 | A | protein | null | enterotoxin type b | ANTITOXIN | 12/25/24 | Crystal structure of nanobody SEB-Nb20 bound to staphylococcal enterotoxin B (SEB) | Staphylococcus aureus; Vicugna pacos | vicugna pacos | null | staphylococcus aureus | Ding, Y., Zong, X., Liu, R., Liu, P. | 2.08 | X-RAY DIFFRACTION | 0.253 | 0.22 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ybp/annotation/8ybp_B_VH.ann | null | sabdab_dataset/8ybp/imgt/8ybp_B_H.ann | null | sabdab_dataset/8ybp/sequence/8ybp_raw.pdb | sabdab_dataset/8ybp/sequence/8ybp_B_VH.fa | null | sabdab_dataset/8ybp/structure/8ybp.pdb | sabdab_dataset/8ybp/structure/chothia/8ybp.pdb | true | true | train |
8yby | A | C | 0 | B | protein | null | spike glycoprotein | PROTEIN BINDING | 02/19/25 | State - I: Spike 2-up RBD with THSC20.HVTR26 (Fab26) - single Fab masked | Homo sapiens; Severe acute respiratory syndrome coronavirus | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus | Rencilin, C.F., Bhattacharya, J., Dutta, S. | 4.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null | sabdab_dataset/8yby/abangle/8yby.abangle | sabdab_dataset/8yby/annotation/8yby_A_VH.ann | sabdab_dataset/8yby/annotation/8yby_C_VL.ann | sabdab_dataset/8yby/imgt/8yby_A_H.ann | sabdab_dataset/8yby/imgt/8yby_C_L.ann | sabdab_dataset/8yby/sequence/8yby_raw.pdb | sabdab_dataset/8yby/sequence/8yby_A_VH.fa | sabdab_dataset/8yby/sequence/8yby_C_VL.fa | sabdab_dataset/8yby/structure/8yby.pdb | sabdab_dataset/8yby/structure/chothia/8yby.pdb | false | false | train |
8ybz | D | G | 0 | B | A | protein | protein | NA | NA | spike glycoprotein | spike glycoprotein | PROTEIN BINDING | 02/19/25 | State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26) | Homo sapiens; Severe acute respiratory syndrome coronavirus | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus | severe acute respiratory syndrome coronavirus | Rencilin, C.F., Bhattacharya, J., Dutta, S. | 4.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null | sabdab_dataset/8ybz/abangle/8ybz.abangle | sabdab_dataset/8ybz/annotation/8ybz_D_VH.ann | sabdab_dataset/8ybz/annotation/8ybz_G_VL.ann | sabdab_dataset/8ybz/imgt/8ybz_D_H.ann | sabdab_dataset/8ybz/imgt/8ybz_G_L.ann | sabdab_dataset/8ybz/sequence/8ybz_raw.pdb | sabdab_dataset/8ybz/sequence/8ybz_D_VH.fa | sabdab_dataset/8ybz/sequence/8ybz_G_VL.fa | sabdab_dataset/8ybz/structure/8ybz.pdb | sabdab_dataset/8ybz/structure/chothia/8ybz.pdb | false | false | train |
8ybz | E | H | 0 | B | protein | null | spike glycoprotein | PROTEIN BINDING | 02/19/25 | State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26) | Homo sapiens; Severe acute respiratory syndrome coronavirus | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus | Rencilin, C.F., Bhattacharya, J., Dutta, S. | 4.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null | sabdab_dataset/8ybz/abangle/8ybz.abangle | sabdab_dataset/8ybz/annotation/8ybz_E_VH.ann | sabdab_dataset/8ybz/annotation/8ybz_H_VL.ann | sabdab_dataset/8ybz/imgt/8ybz_E_H.ann | sabdab_dataset/8ybz/imgt/8ybz_H_L.ann | sabdab_dataset/8ybz/sequence/8ybz_raw.pdb | sabdab_dataset/8ybz/sequence/8ybz_E_VH.fa | sabdab_dataset/8ybz/sequence/8ybz_H_VL.fa | sabdab_dataset/8ybz/structure/8ybz.pdb | sabdab_dataset/8ybz/structure/chothia/8ybz.pdb | false | false | validation |
8ybz | F | I | 0 | C | protein | null | spike glycoprotein | PROTEIN BINDING | 02/19/25 | State - II: Spike 3-up RBD with THSC20.HVTR26 (Fab26) | Homo sapiens; Severe acute respiratory syndrome coronavirus | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus | Rencilin, C.F., Bhattacharya, J., Dutta, S. | 4.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null | sabdab_dataset/8ybz/abangle/8ybz.abangle | sabdab_dataset/8ybz/annotation/8ybz_F_VH.ann | sabdab_dataset/8ybz/annotation/8ybz_I_VL.ann | sabdab_dataset/8ybz/imgt/8ybz_F_H.ann | sabdab_dataset/8ybz/imgt/8ybz_I_L.ann | sabdab_dataset/8ybz/sequence/8ybz_raw.pdb | sabdab_dataset/8ybz/sequence/8ybz_F_VH.fa | sabdab_dataset/8ybz/sequence/8ybz_I_VL.fa | sabdab_dataset/8ybz/structure/8ybz.pdb | sabdab_dataset/8ybz/structure/chothia/8ybz.pdb | false | false | train |
8yef | A | B | 0 | J | I | K | H | protein | protein | protein | protein | NA | NA | NA | NA | major capsid protein l1 | major capsid protein l1 | major capsid protein l1 | major capsid protein l1 | VIRAL PROTEIN/IMMUNE SYSTEM | 02/26/25 | HPV6 L1 pentamer in complex with Fab F5-77 | Alphapapillomavirus 10; Homo sapiens | homo sapiens | homo sapiens | alphapapillomavirus 10 | alphapapillomavirus 10 | alphapapillomavirus 10 | alphapapillomavirus 10 | Wang, X., Fu, W. | 4.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null | sabdab_dataset/8yef/abangle/8yef.abangle | sabdab_dataset/8yef/annotation/8yef_A_VH.ann | sabdab_dataset/8yef/annotation/8yef_B_VL.ann | sabdab_dataset/8yef/imgt/8yef_A_H.ann | sabdab_dataset/8yef/imgt/8yef_B_L.ann | sabdab_dataset/8yef/sequence/8yef_raw.pdb | sabdab_dataset/8yef/sequence/8yef_A_VH.fa | sabdab_dataset/8yef/sequence/8yef_B_VL.fa | sabdab_dataset/8yef/structure/8yef.pdb | sabdab_dataset/8yef/structure/chothia/8yef.pdb | false | false | validation |
8yfo | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 09/03/25 | A cryo-EM structure of Ac-LA-PTH-PTH1R-Gs complex | Homo sapiens; Mus musculus | mus musculus | null | homo sapiens | homo sapiens | Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Xu, H.E. | 2.71 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8yfo/annotation/8yfo_N_VH.ann | null | sabdab_dataset/8yfo/imgt/8yfo_N_H.ann | null | sabdab_dataset/8yfo/sequence/8yfo_raw.pdb | sabdab_dataset/8yfo/sequence/8yfo_N_VH.fa | null | sabdab_dataset/8yfo/structure/8yfo.pdb | sabdab_dataset/8yfo/structure/chothia/8yfo.pdb | false | false | train |
8yg4 | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 09/03/25 | A cryo-EM structure of LA-PTH-R1-PTH1R-Gs complex structure | Homo sapiens; Mus musculus | mus musculus | null | homo sapiens | homo sapiens | Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Xu, H.E. | 2.59 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8yg4/annotation/8yg4_N_VH.ann | null | sabdab_dataset/8yg4/imgt/8yg4_N_H.ann | null | sabdab_dataset/8yg4/sequence/8yg4_raw.pdb | sabdab_dataset/8yg4/sequence/8yg4_N_VH.fa | null | sabdab_dataset/8yg4/structure/8yg4.pdb | sabdab_dataset/8yg4/structure/chothia/8yg4.pdb | false | false | validation |
8ygt | H | L | 0 | B | A | protein | peptide | NA | NA | outer capsid protein vp4 | outer capsid protein vp4 | VIRUS | 02/12/25 | Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side) | Mus musculus; Rotavirus A | mus musculus | mus musculus | rotavirus a | rotavirus a | Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N. | 3.01 | ELECTRON MICROSCOPY | null | null | false | true | IGHV2 | IGKV6 | Kappa | null | null | null | null | null | sabdab_dataset/8ygt/abangle/8ygt.abangle | sabdab_dataset/8ygt/annotation/8ygt_H_VH.ann | sabdab_dataset/8ygt/annotation/8ygt_L_VL.ann | sabdab_dataset/8ygt/imgt/8ygt_H_H.ann | sabdab_dataset/8ygt/imgt/8ygt_L_L.ann | sabdab_dataset/8ygt/sequence/8ygt_raw.pdb | sabdab_dataset/8ygt/sequence/8ygt_H_VH.fa | sabdab_dataset/8ygt/sequence/8ygt_L_VL.fa | sabdab_dataset/8ygt/structure/8ygt.pdb | sabdab_dataset/8ygt/structure/chothia/8ygt.pdb | false | false | train |
8ygu | H | L | 0 | B | C | A | protein | peptide | peptide | NA | NA | NA | outer capsid protein vp4 | outer capsid protein vp4 | outer capsid protein vp4 | VIRUS | 02/12/25 | Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side) | Mus musculus; Rotavirus A | mus musculus | mus musculus | rotavirus a | rotavirus a | rotavirus a | Huang, Y., Sun, H., Zheng, Q., Li, S., Ge, S., Xia, N. | 3.13 | ELECTRON MICROSCOPY | null | null | false | true | IGHV2 | IGKV6 | Kappa | null | null | null | null | null | sabdab_dataset/8ygu/abangle/8ygu.abangle | sabdab_dataset/8ygu/annotation/8ygu_H_VH.ann | sabdab_dataset/8ygu/annotation/8ygu_L_VL.ann | sabdab_dataset/8ygu/imgt/8ygu_H_H.ann | sabdab_dataset/8ygu/imgt/8ygu_L_L.ann | sabdab_dataset/8ygu/sequence/8ygu_raw.pdb | sabdab_dataset/8ygu/sequence/8ygu_H_VH.fa | sabdab_dataset/8ygu/sequence/8ygu_L_VL.fa | sabdab_dataset/8ygu/structure/8ygu.pdb | sabdab_dataset/8ygu/structure/chothia/8ygu.pdb | false | false | validation |
8yh0 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 11/06/24 | A3R-Gi complex bound to NECA | Homo sapiens; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus | mus musculus | null | homo sapiens | rattus rattus | Oshima, H.S., Shihoya, W., Nureki, O. | 2.86 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yh0/abangle/8yh0.abangle | sabdab_dataset/8yh0/annotation/8yh0_S_VH.ann | sabdab_dataset/8yh0/annotation/8yh0_S_VL.ann | sabdab_dataset/8yh0/imgt/8yh0_S_H.ann | sabdab_dataset/8yh0/imgt/8yh0_S_L.ann | sabdab_dataset/8yh0/sequence/8yh0_raw.pdb | sabdab_dataset/8yh0/sequence/8yh0_S_VH.fa | sabdab_dataset/8yh0/sequence/8yh0_S_VL.fa | sabdab_dataset/8yh0/structure/8yh0.pdb | sabdab_dataset/8yh0/structure/chothia/8yh0.pdb | false | false | validation |
8yh2 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 11/06/24 | A3R-Gi complex bound to adenosine | Homo sapiens; Human orthopneumovirus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus | mus musculus | null | homo sapiens | rattus rattus | Oshima, H.S., Shihoya, W., Nureki, O. | 3.27 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yh2/abangle/8yh2.abangle | sabdab_dataset/8yh2/annotation/8yh2_S_VH.ann | sabdab_dataset/8yh2/annotation/8yh2_S_VL.ann | sabdab_dataset/8yh2/imgt/8yh2_S_H.ann | sabdab_dataset/8yh2/imgt/8yh2_S_L.ann | sabdab_dataset/8yh2/sequence/8yh2_raw.pdb | sabdab_dataset/8yh2/sequence/8yh2_S_VH.fa | sabdab_dataset/8yh2/sequence/8yh2_S_VL.fa | sabdab_dataset/8yh2/structure/8yh2.pdb | sabdab_dataset/8yh2/structure/chothia/8yh2.pdb | false | false | train |
8yh3 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 11/06/24 | A3R-Gi complex bound to m6A | Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus | mus musculus | null | homo sapiens, bos taurus | rattus rattus | Oshima, H.S., Shihoya, W., Nureki, O. | 3.4 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yh3/abangle/8yh3.abangle | sabdab_dataset/8yh3/annotation/8yh3_S_VH.ann | sabdab_dataset/8yh3/annotation/8yh3_S_VL.ann | sabdab_dataset/8yh3/imgt/8yh3_S_H.ann | sabdab_dataset/8yh3/imgt/8yh3_S_L.ann | sabdab_dataset/8yh3/sequence/8yh3_raw.pdb | sabdab_dataset/8yh3/sequence/8yh3_S_VH.fa | sabdab_dataset/8yh3/sequence/8yh3_S_VL.fa | sabdab_dataset/8yh3/structure/8yh3.pdb | sabdab_dataset/8yh3/structure/chothia/8yh3.pdb | false | false | train |
8yh5 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 11/06/24 | A3R-Gi complex bound to i6A | Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus | mus musculus | null | homo sapiens, bos taurus | rattus rattus | Oshima, H.S., Shihoya, W., Nureki, O. | 3.66 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yh5/abangle/8yh5.abangle | sabdab_dataset/8yh5/annotation/8yh5_S_VH.ann | sabdab_dataset/8yh5/annotation/8yh5_S_VL.ann | sabdab_dataset/8yh5/imgt/8yh5_S_H.ann | sabdab_dataset/8yh5/imgt/8yh5_S_L.ann | sabdab_dataset/8yh5/sequence/8yh5_raw.pdb | sabdab_dataset/8yh5/sequence/8yh5_S_VH.fa | sabdab_dataset/8yh5/sequence/8yh5_S_VL.fa | sabdab_dataset/8yh5/structure/8yh5.pdb | sabdab_dataset/8yh5/structure/chothia/8yh5.pdb | false | false | validation |
8yh6 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 11/06/24 | A3R-Gi complex bound to namodenoson | Bos taurus; Homo sapiens; human respiratory syncytial virus; Influenza A virus (A/Victoria/3/1975(H3N2)); Mus musculus; Ovis aries; Rattus rattus | mus musculus | null | homo sapiens, bos taurus | rattus rattus | Oshima, H.S., Shihoya, W., Nureki, O. | 3.62 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yh6/abangle/8yh6.abangle | sabdab_dataset/8yh6/annotation/8yh6_S_VH.ann | sabdab_dataset/8yh6/annotation/8yh6_S_VL.ann | sabdab_dataset/8yh6/imgt/8yh6_S_H.ann | sabdab_dataset/8yh6/imgt/8yh6_S_L.ann | sabdab_dataset/8yh6/sequence/8yh6_raw.pdb | sabdab_dataset/8yh6/sequence/8yh6_S_VH.fa | sabdab_dataset/8yh6/sequence/8yh6_S_VL.fa | sabdab_dataset/8yh6/structure/8yh6.pdb | sabdab_dataset/8yh6/structure/chothia/8yh6.pdb | false | false | validation |
8yhz | H | L | 0 | P | peptide | null | sodium channel protein type 9 subunit alpha | MEMBRANE PROTEIN/IMMUNE SYSTEM | 10/23/24 | The co-crystal structure of the Fab fragment of Ab-1080 with NaV1.7 VSDII peptide | Oryctolagus cuniculus; SYNTHETIC CONSTRUCT | oryctolagus cuniculus | oryctolagus cuniculus | homo sapiens | Juanjuan, D., Yaning, Z., Rui, Z., Yanchao, D. | 1.62 | X-RAY DIFFRACTION | 0.210 | 0.194 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null | sabdab_dataset/8yhz/abangle/8yhz.abangle | sabdab_dataset/8yhz/annotation/8yhz_H_VH.ann | sabdab_dataset/8yhz/annotation/8yhz_L_VL.ann | sabdab_dataset/8yhz/imgt/8yhz_H_H.ann | sabdab_dataset/8yhz/imgt/8yhz_L_L.ann | sabdab_dataset/8yhz/sequence/8yhz_raw.pdb | sabdab_dataset/8yhz/sequence/8yhz_H_VH.fa | sabdab_dataset/8yhz/sequence/8yhz_L_VL.fa | sabdab_dataset/8yhz/structure/8yhz.pdb | sabdab_dataset/8yhz/structure/chothia/8yhz.pdb | true | false | test |
8yj5 | C | null | 0 | A | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRANSPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Streptococcus pyogenes; Vicugna pacos | vicugna pacos | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 3.66 | X-RAY DIFFRACTION | 0.303 | 0.263 | true | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yj5/annotation/8yj5_C_VH.ann | null | sabdab_dataset/8yj5/imgt/8yj5_C_H.ann | null | sabdab_dataset/8yj5/sequence/8yj5_raw.pdb | sabdab_dataset/8yj5/sequence/8yj5_C_VH.fa | null | sabdab_dataset/8yj5/structure/8yj5.pdb | sabdab_dataset/8yj5/structure/chothia/8yj5.pdb | true | true | validation |
8yj7 | E | e | 0 | C | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRNASPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Oryctolagus cuniculus; Streptococcus pyogenes | oryctolagus cuniculus | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 2.8 | X-RAY DIFFRACTION | 0.276 | 0.222 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yj7/abangle/8yj7.abangle | sabdab_dataset/8yj7/annotation/8yj7_E_VH.ann | sabdab_dataset/8yj7/annotation/8yj7_E_VL.ann | sabdab_dataset/8yj7/imgt/8yj7_E_H.ann | sabdab_dataset/8yj7/imgt/8yj7_E_L.ann | sabdab_dataset/8yj7/sequence/8yj7_raw.pdb | sabdab_dataset/8yj7/sequence/8yj7_E_VH.fa | sabdab_dataset/8yj7/sequence/8yj7_E_VL.fa | sabdab_dataset/8yj7/structure/8yj7.pdb | sabdab_dataset/8yj7/structure/chothia/8yj7.pdb | true | true | test |
8yj7 | F | f | 0 | B | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRNASPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Oryctolagus cuniculus; Streptococcus pyogenes | oryctolagus cuniculus | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 2.8 | X-RAY DIFFRACTION | 0.276 | 0.222 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yj7/abangle/8yj7.abangle | sabdab_dataset/8yj7/annotation/8yj7_F_VH.ann | sabdab_dataset/8yj7/annotation/8yj7_F_VL.ann | sabdab_dataset/8yj7/imgt/8yj7_F_H.ann | sabdab_dataset/8yj7/imgt/8yj7_F_L.ann | sabdab_dataset/8yj7/sequence/8yj7_raw.pdb | sabdab_dataset/8yj7/sequence/8yj7_F_VH.fa | sabdab_dataset/8yj7/sequence/8yj7_F_VL.fa | sabdab_dataset/8yj7/structure/8yj7.pdb | sabdab_dataset/8yj7/structure/chothia/8yj7.pdb | true | false | train |
8yj7 | G | g | 0 | B | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRNASPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Oryctolagus cuniculus; Streptococcus pyogenes | oryctolagus cuniculus | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 2.8 | X-RAY DIFFRACTION | 0.276 | 0.222 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yj7/abangle/8yj7.abangle | sabdab_dataset/8yj7/annotation/8yj7_G_VH.ann | sabdab_dataset/8yj7/annotation/8yj7_G_VL.ann | sabdab_dataset/8yj7/imgt/8yj7_G_H.ann | sabdab_dataset/8yj7/imgt/8yj7_G_L.ann | sabdab_dataset/8yj7/sequence/8yj7_raw.pdb | sabdab_dataset/8yj7/sequence/8yj7_G_VH.fa | sabdab_dataset/8yj7/sequence/8yj7_G_VL.fa | sabdab_dataset/8yj7/structure/8yj7.pdb | sabdab_dataset/8yj7/structure/chothia/8yj7.pdb | true | false | train |
8yj7 | H | h | 0 | A | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRNASPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Oryctolagus cuniculus; Streptococcus pyogenes | oryctolagus cuniculus | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 2.8 | X-RAY DIFFRACTION | 0.276 | 0.222 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yj7/abangle/8yj7.abangle | sabdab_dataset/8yj7/annotation/8yj7_H_VH.ann | sabdab_dataset/8yj7/annotation/8yj7_H_VL.ann | sabdab_dataset/8yj7/imgt/8yj7_H_H.ann | sabdab_dataset/8yj7/imgt/8yj7_H_L.ann | sabdab_dataset/8yj7/sequence/8yj7_raw.pdb | sabdab_dataset/8yj7/sequence/8yj7_H_VH.fa | sabdab_dataset/8yj7/sequence/8yj7_H_VL.fa | sabdab_dataset/8yj7/structure/8yj7.pdb | sabdab_dataset/8yj7/structure/chothia/8yj7.pdb | true | false | validation |
8yj8 | C | null | 0 | null | null | null | null | METAL TRANSPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Streptococcus pyogenes; Vicugna pacos | vicugna pacos | null | null | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 1.65 | X-RAY DIFFRACTION | 0.228 | 0.188 | true | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yj8/annotation/8yj8_C_VH.ann | null | sabdab_dataset/8yj8/imgt/8yj8_C_H.ann | null | sabdab_dataset/8yj8/sequence/8yj8_raw.pdb | sabdab_dataset/8yj8/sequence/8yj8_C_VH.fa | null | sabdab_dataset/8yj8/structure/8yj8.pdb | sabdab_dataset/8yj8/structure/chothia/8yj8.pdb | true | false | validation |
8yj8 | D | null | 0 | B | protein | null | iron abc transporter substrate-binding lipoprotein mtsa | METAL TRANSPORT/IMMUNE SYSTEM | 06/19/24 | Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA | Streptococcus pyogenes; Vicugna pacos | vicugna pacos | null | streptococcus pyogenes | Ito, S., Nagatoishi, S., Nakakido, M., Tsumoto, K. | 1.65 | X-RAY DIFFRACTION | 0.228 | 0.188 | true | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yj8/annotation/8yj8_D_VH.ann | null | sabdab_dataset/8yj8/imgt/8yj8_D_H.ann | null | sabdab_dataset/8yj8/sequence/8yj8_raw.pdb | sabdab_dataset/8yj8/sequence/8yj8_D_VH.fa | null | sabdab_dataset/8yj8/structure/8yj8.pdb | sabdab_dataset/8yj8/structure/chothia/8yj8.pdb | true | false | validation |
8yk4 | A | a | 0 | C | protein | null | spike protein s1 | VIRAL PROTEIN | 03/12/25 | Structure of SARS-CoV-2 RBD and antibody NT-108 | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Anraku, Y., Kita, S., Onodera, T., Sato, A., Tadokoro, T., Adachi, Y., Ito, S., Suzuki, T., Sasaki, J., Shiwa, N., Iwata, N., Nagata, N., Kazuki, Y., Oshimura, M., Sasaki, M., Orba, Y., Suzuki, T., Sawa, H., Hashiguchi, T., Fukuhara, H., Takahashi, Y., Maenaka, K. | 3.2 | X-RAY DIFFRACTION | 0.267 | 0.243 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yk4/abangle/8yk4.abangle | sabdab_dataset/8yk4/annotation/8yk4_A_VH.ann | sabdab_dataset/8yk4/annotation/8yk4_A_VL.ann | sabdab_dataset/8yk4/imgt/8yk4_A_H.ann | sabdab_dataset/8yk4/imgt/8yk4_A_L.ann | sabdab_dataset/8yk4/sequence/8yk4_raw.pdb | sabdab_dataset/8yk4/sequence/8yk4_A_VH.fa | sabdab_dataset/8yk4/sequence/8yk4_A_VL.fa | sabdab_dataset/8yk4/structure/8yk4.pdb | sabdab_dataset/8yk4/structure/chothia/8yk4.pdb | true | true | train |
8ykd | N | null | 0 | A | G | B | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(s) subunit alpha | guanine nucleotide-binding protein subunit gamma | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 08/13/25 | Cryo-EM structure of ADGRG2-Gs complex with NTF nanobody | Spodoptera | spodoptera | null | spodoptera | spodoptera | spodoptera | Huang, S.M., Sheng-chao, G. | 2.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null | sabdab_dataset/8ykd/abangle/8ykd.abangle | sabdab_dataset/8ykd/annotation/8ykd_N_VH.ann | null | sabdab_dataset/8ykd/imgt/8ykd_N_H.ann | null | sabdab_dataset/8ykd/sequence/8ykd_raw.pdb | sabdab_dataset/8ykd/sequence/8ykd_N_VH.fa | null | sabdab_dataset/8ykd/structure/8ykd.pdb | sabdab_dataset/8ykd/structure/chothia/8ykd.pdb | false | false | validation |
8ykd | S | s | 0 | A | protein | null | guanine nucleotide-binding protein g(s) subunit alpha | MEMBRANE PROTEIN | 08/13/25 | Cryo-EM structure of ADGRG2-Gs complex with NTF nanobody | Spodoptera | spodoptera | null | spodoptera | Huang, S.M., Sheng-chao, G. | 2.9 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykd/abangle/8ykd.abangle | sabdab_dataset/8ykd/annotation/8ykd_S_VH.ann | sabdab_dataset/8ykd/annotation/8ykd_S_VL.ann | sabdab_dataset/8ykd/imgt/8ykd_S_H.ann | sabdab_dataset/8ykd/imgt/8ykd_S_L.ann | sabdab_dataset/8ykd/sequence/8ykd_raw.pdb | sabdab_dataset/8ykd/sequence/8ykd_S_VH.fa | sabdab_dataset/8ykd/sequence/8ykd_S_VL.fa | sabdab_dataset/8ykd/structure/8ykd.pdb | sabdab_dataset/8ykd/structure/chothia/8ykd.pdb | false | false | validation |
8ykg | D | d | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 03/12/25 | Structure of SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state) | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Anraku, Y., Kita, S., Onodera, T., Tadokoro, T., Ito, S., Adachi, Y., Kotaki, R., Suzuki, T., Hashiguchi, T., Takahashi, Y., Maenaka, K. | 3.28 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykg/abangle/8ykg.abangle | sabdab_dataset/8ykg/annotation/8ykg_D_VH.ann | sabdab_dataset/8ykg/annotation/8ykg_D_VL.ann | sabdab_dataset/8ykg/imgt/8ykg_D_H.ann | sabdab_dataset/8ykg/imgt/8ykg_D_L.ann | sabdab_dataset/8ykg/sequence/8ykg_raw.pdb | sabdab_dataset/8ykg/sequence/8ykg_D_VH.fa | sabdab_dataset/8ykg/sequence/8ykg_D_VL.fa | sabdab_dataset/8ykg/structure/8ykg.pdb | sabdab_dataset/8ykg/structure/chothia/8ykg.pdb | false | false | train |
8ykg | F | f | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 03/12/25 | Structure of SARS-CoV-2 spike glycoprotein in complex with NT-108 scFv (1-up state) | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Anraku, Y., Kita, S., Onodera, T., Tadokoro, T., Ito, S., Adachi, Y., Kotaki, R., Suzuki, T., Hashiguchi, T., Takahashi, Y., Maenaka, K. | 3.28 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykg/abangle/8ykg.abangle | sabdab_dataset/8ykg/annotation/8ykg_F_VH.ann | sabdab_dataset/8ykg/annotation/8ykg_F_VL.ann | sabdab_dataset/8ykg/imgt/8ykg_F_H.ann | sabdab_dataset/8ykg/imgt/8ykg_F_L.ann | sabdab_dataset/8ykg/sequence/8ykg_raw.pdb | sabdab_dataset/8ykg/sequence/8ykg_F_VH.fa | sabdab_dataset/8ykg/sequence/8ykg_F_VL.fa | sabdab_dataset/8ykg/structure/8ykg.pdb | sabdab_dataset/8ykg/structure/chothia/8ykg.pdb | false | false | train |
8ykh | A | a | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 03/12/25 | Structure of SARS-CoV-2 spike RBD in complex with NT-108 scFv | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Anraku, Y., Kita, S., Onodera, T., Tadokoro, T., Ito, S., Adachi, Y., Kotaki, R., Suzuki, T., Hashiguchi, T., Takahashi, Y., Maenaka, K. | 3.27 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykh/abangle/8ykh.abangle | sabdab_dataset/8ykh/annotation/8ykh_A_VH.ann | sabdab_dataset/8ykh/annotation/8ykh_A_VL.ann | sabdab_dataset/8ykh/imgt/8ykh_A_H.ann | sabdab_dataset/8ykh/imgt/8ykh_A_L.ann | sabdab_dataset/8ykh/sequence/8ykh_raw.pdb | sabdab_dataset/8ykh/sequence/8ykh_A_VH.fa | sabdab_dataset/8ykh/sequence/8ykh_A_VL.fa | sabdab_dataset/8ykh/structure/8ykh.pdb | sabdab_dataset/8ykh/structure/chothia/8ykh.pdb | false | false | train |
8ykt | H | L | 0 | A | protein | null | enterotoxin type b | PROTEIN BINDING/IMMUNE SYSTEM | 03/12/25 | Fab and SEB complex | Homo sapiens; Staphylococcus aureus | homo sapiens | homo sapiens | staphylococcus aureus | Zeng, H., Fan, H.Y. | 2.04 | X-RAY DIFFRACTION | 0.230 | 0.195 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8ykt/abangle/8ykt.abangle | sabdab_dataset/8ykt/annotation/8ykt_H_VH.ann | sabdab_dataset/8ykt/annotation/8ykt_L_VL.ann | sabdab_dataset/8ykt/imgt/8ykt_H_H.ann | sabdab_dataset/8ykt/imgt/8ykt_L_L.ann | sabdab_dataset/8ykt/sequence/8ykt_raw.pdb | sabdab_dataset/8ykt/sequence/8ykt_H_VH.fa | sabdab_dataset/8ykt/sequence/8ykt_L_VL.fa | sabdab_dataset/8ykt/structure/8ykt.pdb | sabdab_dataset/8ykt/structure/chothia/8ykt.pdb | true | false | train |
8ykv | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 01/08/09 | Cryo-EM structure of succinate receptor SUCR1 bound to compound 31 | Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct | synthetic construct | null | homo sapiens | rattus norvegicus | Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E. | 2.48 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykv/abangle/8ykv.abangle | sabdab_dataset/8ykv/annotation/8ykv_E_VH.ann | sabdab_dataset/8ykv/annotation/8ykv_E_VL.ann | sabdab_dataset/8ykv/imgt/8ykv_E_H.ann | sabdab_dataset/8ykv/imgt/8ykv_E_L.ann | sabdab_dataset/8ykv/sequence/8ykv_raw.pdb | sabdab_dataset/8ykv/sequence/8ykv_E_VH.fa | sabdab_dataset/8ykv/sequence/8ykv_E_VL.fa | sabdab_dataset/8ykv/structure/8ykv.pdb | sabdab_dataset/8ykv/structure/chothia/8ykv.pdb | false | false | test |
8ykw | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 05/29/24 | Cryo-EM structure of succinate receptor SUCR1 bound to succinic acid | Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct | synthetic construct | null | homo sapiens | rattus norvegicus | Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E. | 2.75 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykw/abangle/8ykw.abangle | sabdab_dataset/8ykw/annotation/8ykw_E_VH.ann | sabdab_dataset/8ykw/annotation/8ykw_E_VL.ann | sabdab_dataset/8ykw/imgt/8ykw_E_H.ann | sabdab_dataset/8ykw/imgt/8ykw_E_L.ann | sabdab_dataset/8ykw/sequence/8ykw_raw.pdb | sabdab_dataset/8ykw/sequence/8ykw_E_VH.fa | sabdab_dataset/8ykw/sequence/8ykw_E_VL.fa | sabdab_dataset/8ykw/structure/8ykw.pdb | sabdab_dataset/8ykw/structure/chothia/8ykw.pdb | false | false | train |
8ykx | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANTE PROTEIN/IMMUNE SYSTEM | 05/29/24 | Cryo-EM structure of succinate receptor SUCR1 bound to maleic acid | Bos taurus; Homo sapiens; Rattus norvegicus; synthetic construct | synthetic construct | null | homo sapiens | rattus norvegicus | Li, C., Liu, H., Li, J., Zhu, H., Fu, W., Xu, H.E. | 2.69 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ykx/abangle/8ykx.abangle | sabdab_dataset/8ykx/annotation/8ykx_E_VH.ann | sabdab_dataset/8ykx/annotation/8ykx_E_VL.ann | sabdab_dataset/8ykx/imgt/8ykx_E_H.ann | sabdab_dataset/8ykx/imgt/8ykx_E_L.ann | sabdab_dataset/8ykx/sequence/8ykx_raw.pdb | sabdab_dataset/8ykx/sequence/8ykx_E_VH.fa | sabdab_dataset/8ykx/sequence/8ykx_E_VL.fa | sabdab_dataset/8ykx/structure/8ykx.pdb | sabdab_dataset/8ykx/structure/chothia/8ykx.pdb | false | false | train |
8yky | S | s | 0 | A | C | B | protein | protein | protein | NA | NA | NA | g alpha gustducin protein | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 01/08/09 | Structure of human class T GPCR TAS2R14-Ggustducin complex with agonist 28.1 | Clostridium perfringens; Homo sapiens; synthetic construct | homo sapiens | null | homo sapiens | homo sapiens | homo sapiens | Hu, X.L., Wu, L.J., Hua, T., Liu, Z.J. | 2.99 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yky/abangle/8yky.abangle | sabdab_dataset/8yky/annotation/8yky_S_VH.ann | sabdab_dataset/8yky/annotation/8yky_S_VL.ann | sabdab_dataset/8yky/imgt/8yky_S_H.ann | sabdab_dataset/8yky/imgt/8yky_S_L.ann | sabdab_dataset/8yky/sequence/8yky_raw.pdb | sabdab_dataset/8yky/sequence/8yky_S_VH.fa | sabdab_dataset/8yky/sequence/8yky_S_VL.fa | sabdab_dataset/8yky/structure/8yky.pdb | sabdab_dataset/8yky/structure/chothia/8yky.pdb | false | false | train |
8yn2 | E | e | 0 | A | B | protein | protein | NA | NA | engineered guanine nucleotide-binding protein g(q) subunitalpha | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H1 receptor in complex with histamine and miniGq | Homo sapiens; synthetic construct | synthetic construct | null | synthetic construct | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.66 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yn2/abangle/8yn2.abangle | sabdab_dataset/8yn2/annotation/8yn2_E_VH.ann | sabdab_dataset/8yn2/annotation/8yn2_E_VL.ann | sabdab_dataset/8yn2/imgt/8yn2_E_H.ann | sabdab_dataset/8yn2/imgt/8yn2_E_L.ann | sabdab_dataset/8yn2/sequence/8yn2_raw.pdb | sabdab_dataset/8yn2/sequence/8yn2_E_VH.fa | sabdab_dataset/8yn2/sequence/8yn2_E_VL.fa | sabdab_dataset/8yn2/structure/8yn2.pdb | sabdab_dataset/8yn2/structure/chothia/8yn2.pdb | false | false | train |
8yn3 | N | null | 0 | A | B | protein | protein | NA | NA | engineered guanine nucleotide,binding protein g(s) subunitalpha | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGs | Homo sapiens; synthetic construct | synthetic construct | null | synthetic construct | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.56 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8yn3/annotation/8yn3_N_VH.ann | null | sabdab_dataset/8yn3/imgt/8yn3_N_H.ann | null | sabdab_dataset/8yn3/sequence/8yn3_raw.pdb | sabdab_dataset/8yn3/sequence/8yn3_N_VH.fa | null | sabdab_dataset/8yn3/structure/8yn3.pdb | sabdab_dataset/8yn3/structure/chothia/8yn3.pdb | false | false | train |
8yn4 | E | e | 0 | A | B | protein | protein | NA | NA | engineered guanine nucleotide-binding protein g(q) subunitalpha | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H2 receptor in complex with histamine and miniGq | Homo sapiens; synthetic construct | synthetic construct | null | synthetic construct | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.97 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yn4/abangle/8yn4.abangle | sabdab_dataset/8yn4/annotation/8yn4_E_VH.ann | sabdab_dataset/8yn4/annotation/8yn4_E_VL.ann | sabdab_dataset/8yn4/imgt/8yn4_E_H.ann | sabdab_dataset/8yn4/imgt/8yn4_E_L.ann | sabdab_dataset/8yn4/sequence/8yn4_raw.pdb | sabdab_dataset/8yn4/sequence/8yn4_E_VH.fa | sabdab_dataset/8yn4/sequence/8yn4_E_VL.fa | sabdab_dataset/8yn4/structure/8yn4.pdb | sabdab_dataset/8yn4/structure/chothia/8yn4.pdb | false | false | train |
8yn5 | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H3 receptor in complex with histamine and Gi | Homo sapiens; synthetic construct | synthetic construct | null | homo sapiens | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.7 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yn5/abangle/8yn5.abangle | sabdab_dataset/8yn5/annotation/8yn5_E_VH.ann | sabdab_dataset/8yn5/annotation/8yn5_E_VL.ann | sabdab_dataset/8yn5/imgt/8yn5_E_H.ann | sabdab_dataset/8yn5/imgt/8yn5_E_L.ann | sabdab_dataset/8yn5/sequence/8yn5_raw.pdb | sabdab_dataset/8yn5/sequence/8yn5_E_VH.fa | sabdab_dataset/8yn5/sequence/8yn5_E_VL.fa | sabdab_dataset/8yn5/structure/8yn5.pdb | sabdab_dataset/8yn5/structure/chothia/8yn5.pdb | false | false | train |
8yn6 | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H3 receptor in complex with imetit and Gi | Homo sapiens; synthetic construct | synthetic construct | null | homo sapiens | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.77 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yn6/abangle/8yn6.abangle | sabdab_dataset/8yn6/annotation/8yn6_E_VH.ann | sabdab_dataset/8yn6/annotation/8yn6_E_VL.ann | sabdab_dataset/8yn6/imgt/8yn6_E_H.ann | sabdab_dataset/8yn6/imgt/8yn6_E_L.ann | sabdab_dataset/8yn6/sequence/8yn6_raw.pdb | sabdab_dataset/8yn6/sequence/8yn6_E_VH.fa | sabdab_dataset/8yn6/sequence/8yn6_E_VL.fa | sabdab_dataset/8yn6/structure/8yn6.pdb | sabdab_dataset/8yn6/structure/chothia/8yn6.pdb | false | false | train |
8yn9 | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/09/24 | Cryo-EM structure of histamine H4 receptor in complex with histamine and Gi | Homo sapiens; synthetic construct | synthetic construct | null | homo sapiens | homo sapiens | Zhang, X., Liu, G., Li, X., Gong, W. | 2.3 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yn9/abangle/8yn9.abangle | sabdab_dataset/8yn9/annotation/8yn9_E_VH.ann | sabdab_dataset/8yn9/annotation/8yn9_E_VL.ann | sabdab_dataset/8yn9/imgt/8yn9_E_H.ann | sabdab_dataset/8yn9/imgt/8yn9_E_L.ann | sabdab_dataset/8yn9/sequence/8yn9_raw.pdb | sabdab_dataset/8yn9/sequence/8yn9_E_VH.fa | sabdab_dataset/8yn9/sequence/8yn9_E_VL.fa | sabdab_dataset/8yn9/structure/8yn9.pdb | sabdab_dataset/8yn9/structure/chothia/8yn9.pdb | false | false | train |
8yor | B | A | 0 | E | peptide | null | histidine--trna ligase, cytoplasmic | SPLICING/IMMUNE SYSTEM | 02/12/25 | Complex of HARSWHEP and a-HARSWHEP Fab | Homo sapiens | homo sapiens | homo sapiens | homo sapiens | Zhai, L. | 2.3 | X-RAY DIFFRACTION | 0.273 | 0.227 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yor/abangle/8yor.abangle | sabdab_dataset/8yor/annotation/8yor_B_VH.ann | sabdab_dataset/8yor/annotation/8yor_A_VL.ann | sabdab_dataset/8yor/imgt/8yor_B_H.ann | sabdab_dataset/8yor/imgt/8yor_A_L.ann | sabdab_dataset/8yor/sequence/8yor_raw.pdb | sabdab_dataset/8yor/sequence/8yor_B_VH.fa | sabdab_dataset/8yor/sequence/8yor_A_VL.fa | sabdab_dataset/8yor/structure/8yor.pdb | sabdab_dataset/8yor/structure/chothia/8yor.pdb | true | false | train |
8yor | D | C | 0 | F | peptide | null | histidine--trna ligase, cytoplasmic | SPLICING/IMMUNE SYSTEM | 02/12/25 | Complex of HARSWHEP and a-HARSWHEP Fab | Homo sapiens | homo sapiens | homo sapiens | homo sapiens | Zhai, L. | 2.3 | X-RAY DIFFRACTION | 0.273 | 0.227 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yor/abangle/8yor.abangle | sabdab_dataset/8yor/annotation/8yor_D_VH.ann | sabdab_dataset/8yor/annotation/8yor_C_VL.ann | sabdab_dataset/8yor/imgt/8yor_D_H.ann | sabdab_dataset/8yor/imgt/8yor_C_L.ann | sabdab_dataset/8yor/sequence/8yor_raw.pdb | sabdab_dataset/8yor/sequence/8yor_D_VH.fa | sabdab_dataset/8yor/sequence/8yor_C_VL.fa | sabdab_dataset/8yor/structure/8yor.pdb | sabdab_dataset/8yor/structure/chothia/8yor.pdb | true | false | test |
8yot | A | null | 0 | B | protein | null | lilrb3 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 06/18/25 | Nanobody in complex with LILRB3 | Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Jin, C., Shi, Y. | 2.48 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yot/annotation/8yot_A_VH.ann | null | sabdab_dataset/8yot/imgt/8yot_A_H.ann | null | sabdab_dataset/8yot/sequence/8yot_raw.pdb | sabdab_dataset/8yot/sequence/8yot_A_VH.fa | null | sabdab_dataset/8yot/structure/8yot.pdb | sabdab_dataset/8yot/structure/chothia/8yot.pdb | false | false | train |
8yot | C | null | 0 | D | protein | null | lilrb3 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 06/18/25 | Nanobody in complex with LILRB3 | Homo sapiens; Vicugna pacos | vicugna pacos | null | homo sapiens | Jin, C., Shi, Y. | 2.48 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yot/annotation/8yot_C_VH.ann | null | sabdab_dataset/8yot/imgt/8yot_C_H.ann | null | sabdab_dataset/8yot/sequence/8yot_raw.pdb | sabdab_dataset/8yot/sequence/8yot_C_VH.fa | null | sabdab_dataset/8yot/structure/8yot.pdb | sabdab_dataset/8yot/structure/chothia/8yot.pdb | false | false | train |
8yrg | E | e | 0 | B | C | protein | protein | NA | NA | gs-mini-gq chimera | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 01/08/09 | CryoEM structure of fospropofol-bound MRGPRX4-Gq complex | Homo sapiens; Mus musculus | mus musculus | null | homo sapiens | homo sapiens | Cao, C., Fay, J.F., Roth, B.L. | 3.14 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yrg/abangle/8yrg.abangle | sabdab_dataset/8yrg/annotation/8yrg_E_VH.ann | sabdab_dataset/8yrg/annotation/8yrg_E_VL.ann | sabdab_dataset/8yrg/imgt/8yrg_E_H.ann | sabdab_dataset/8yrg/imgt/8yrg_E_L.ann | sabdab_dataset/8yrg/sequence/8yrg_raw.pdb | sabdab_dataset/8yrg/sequence/8yrg_E_VH.fa | sabdab_dataset/8yrg/sequence/8yrg_E_VL.fa | sabdab_dataset/8yrg/structure/8yrg.pdb | sabdab_dataset/8yrg/structure/chothia/8yrg.pdb | false | false | train |
8yro | B | C | 0 | P | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 01/08/09 | SARS-CoV-2 Delta Spike in complex with JL-8C | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Nguyen, V.H.T., Chen, X. | 3.27 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8yro/abangle/8yro.abangle | sabdab_dataset/8yro/annotation/8yro_B_VH.ann | sabdab_dataset/8yro/annotation/8yro_C_VL.ann | sabdab_dataset/8yro/imgt/8yro_B_H.ann | sabdab_dataset/8yro/imgt/8yro_C_L.ann | sabdab_dataset/8yro/sequence/8yro_raw.pdb | sabdab_dataset/8yro/sequence/8yro_B_VH.fa | sabdab_dataset/8yro/sequence/8yro_C_VL.fa | sabdab_dataset/8yro/structure/8yro.pdb | sabdab_dataset/8yro/structure/chothia/8yro.pdb | false | false | train |
8yro | E | F | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 01/08/09 | SARS-CoV-2 Delta Spike in complex with JL-8C | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Nguyen, V.H.T., Chen, X. | 3.27 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8yro/abangle/8yro.abangle | sabdab_dataset/8yro/annotation/8yro_E_VH.ann | sabdab_dataset/8yro/annotation/8yro_F_VL.ann | sabdab_dataset/8yro/imgt/8yro_E_H.ann | sabdab_dataset/8yro/imgt/8yro_F_L.ann | sabdab_dataset/8yro/sequence/8yro_raw.pdb | sabdab_dataset/8yro/sequence/8yro_E_VH.fa | sabdab_dataset/8yro/sequence/8yro_F_VL.fa | sabdab_dataset/8yro/structure/8yro.pdb | sabdab_dataset/8yro/structure/chothia/8yro.pdb | false | false | train |
8yro | H | L | 0 | D | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 01/08/09 | SARS-CoV-2 Delta Spike in complex with JL-8C | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Nguyen, V.H.T., Chen, X. | 3.27 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8yro/abangle/8yro.abangle | sabdab_dataset/8yro/annotation/8yro_H_VH.ann | sabdab_dataset/8yro/annotation/8yro_L_VL.ann | sabdab_dataset/8yro/imgt/8yro_H_H.ann | sabdab_dataset/8yro/imgt/8yro_L_L.ann | sabdab_dataset/8yro/sequence/8yro_raw.pdb | sabdab_dataset/8yro/sequence/8yro_H_VH.fa | sabdab_dataset/8yro/sequence/8yro_L_VL.fa | sabdab_dataset/8yro/structure/8yro.pdb | sabdab_dataset/8yro/structure/chothia/8yro.pdb | false | false | test |
8yrp | n | o | 0 | B | A | C | protein | protein | protein | NA | NA | NA | spike glycoprotein | spike glycoprotein | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/05/24 | SARS-CoV-2 Delta Spike in complex with JM-1A | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | Nguyen, V.H.T., Chen, X. | 3.64 | ELECTRON MICROSCOPY | null | null | false | false | IGHV4 | IGKV1 | Kappa | null | null | null | null | null | sabdab_dataset/8yrp/abangle/8yrp.abangle | sabdab_dataset/8yrp/annotation/8yrp_n_VH.ann | sabdab_dataset/8yrp/annotation/8yrp_o_VL.ann | sabdab_dataset/8yrp/imgt/8yrp_n_H.ann | sabdab_dataset/8yrp/imgt/8yrp_o_L.ann | sabdab_dataset/8yrp/sequence/8yrp_raw.pdb | sabdab_dataset/8yrp/sequence/8yrp_n_VH.fa | sabdab_dataset/8yrp/sequence/8yrp_o_VL.fa | sabdab_dataset/8yrp/structure/8yrp.pdb | sabdab_dataset/8yrp/structure/chothia/8yrp.pdb | false | false | validation |
8yry | H | L | 0 | A | protein | null | receptor tyrosine-protein kinase erbb-3 | IMMUNE SYSTEM | 06/25/25 | HER3 in complex with FAb Hu3f8 | Homo sapiens | homo sapiens | homo sapiens | homo sapiens | Wang, M., Li, X. | 2.93 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null | sabdab_dataset/8yry/abangle/8yry.abangle | sabdab_dataset/8yry/annotation/8yry_H_VH.ann | sabdab_dataset/8yry/annotation/8yry_L_VL.ann | sabdab_dataset/8yry/imgt/8yry_H_H.ann | sabdab_dataset/8yry/imgt/8yry_L_L.ann | sabdab_dataset/8yry/sequence/8yry_raw.pdb | sabdab_dataset/8yry/sequence/8yry_H_VH.fa | sabdab_dataset/8yry/sequence/8yry_L_VL.fa | sabdab_dataset/8yry/structure/8yry.pdb | sabdab_dataset/8yry/structure/chothia/8yry.pdb | false | false | train |
8ysf | C | null | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/11/24 | MERS-CoV RBD in complex with nanobody Nb9 | Middle East respiratory syndrome-related coronavirus; Vicugna pacos | vicugna pacos | null | middle east respiratory syndrome-relatedcoronavirus | Wang, Y.X., Ma, S. | 2.76 | X-RAY DIFFRACTION | 0.270 | 0.233 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ysf/annotation/8ysf_C_VH.ann | null | sabdab_dataset/8ysf/imgt/8ysf_C_H.ann | null | sabdab_dataset/8ysf/sequence/8ysf_raw.pdb | sabdab_dataset/8ysf/sequence/8ysf_C_VH.fa | null | sabdab_dataset/8ysf/structure/8ysf.pdb | sabdab_dataset/8ysf/structure/chothia/8ysf.pdb | true | true | train |
8ysf | D | null | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/11/24 | MERS-CoV RBD in complex with nanobody Nb9 | Middle East respiratory syndrome-related coronavirus; Vicugna pacos | vicugna pacos | null | middle east respiratory syndrome-relatedcoronavirus | Wang, Y.X., Ma, S. | 2.76 | X-RAY DIFFRACTION | 0.270 | 0.233 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ysf/annotation/8ysf_D_VH.ann | null | sabdab_dataset/8ysf/imgt/8ysf_D_H.ann | null | sabdab_dataset/8ysf/sequence/8ysf_raw.pdb | sabdab_dataset/8ysf/sequence/8ysf_D_VH.fa | null | sabdab_dataset/8ysf/structure/8ysf.pdb | sabdab_dataset/8ysf/structure/chothia/8ysf.pdb | true | false | train |
8ysh | A | null | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/11/24 | MERS-CoV RBD in complex with nanobody Nb14 | Middle East respiratory syndrome-related coronavirus; Vicugna pacos | vicugna pacos | null | middle east respiratory syndrome-relatedcoronavirus | Wang, Y.X., Ma, S. | 1.99 | X-RAY DIFFRACTION | 0.239 | 0.229 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8ysh/annotation/8ysh_A_VH.ann | null | sabdab_dataset/8ysh/imgt/8ysh_A_H.ann | null | sabdab_dataset/8ysh/sequence/8ysh_raw.pdb | sabdab_dataset/8ysh/sequence/8ysh_A_VH.fa | null | sabdab_dataset/8ysh/structure/8ysh.pdb | sabdab_dataset/8ysh/structure/chothia/8ysh.pdb | true | true | train |
8ytn | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 07/03/24 | Single-chain Fv antibody of E11 | Mus musculus | mus musculus | null | null | Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M. | 1.72 | X-RAY DIFFRACTION | 0.213 | 0.185 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ytn/abangle/8ytn.abangle | sabdab_dataset/8ytn/annotation/8ytn_A_VH.ann | sabdab_dataset/8ytn/annotation/8ytn_A_VL.ann | sabdab_dataset/8ytn/imgt/8ytn_A_H.ann | null | sabdab_dataset/8ytn/sequence/8ytn_raw.pdb | sabdab_dataset/8ytn/sequence/8ytn_A_VH.fa | sabdab_dataset/8ytn/sequence/8ytn_A_VL.fa | sabdab_dataset/8ytn/structure/8ytn.pdb | sabdab_dataset/8ytn/structure/chothia/8ytn.pdb | true | false | validation |
8yto | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 01/08/09 | Single-chain Fv antibody of E11 complex with NP-glycine | Mus musculus | mus musculus | null | null | Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M. | 1.04 | X-RAY DIFFRACTION | 0.124 | 0.107 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yto/abangle/8yto.abangle | sabdab_dataset/8yto/annotation/8yto_A_VH.ann | sabdab_dataset/8yto/annotation/8yto_A_VL.ann | sabdab_dataset/8yto/imgt/8yto_A_H.ann | null | sabdab_dataset/8yto/sequence/8yto_raw.pdb | sabdab_dataset/8yto/sequence/8yto_A_VH.fa | sabdab_dataset/8yto/sequence/8yto_A_VL.fa | sabdab_dataset/8yto/structure/8yto.pdb | sabdab_dataset/8yto/structure/chothia/8yto.pdb | false | false | train |
8ytp | A | a | 0 | a | Hapten | LZO | 5-(5-(3-hydroxyphenyl)thiophen-2-yl)pentanoic acid | IMMUNE SYSTEM | 01/08/09 | Single-chain Fv antibody of E11 complex with NP-glycine under reducing conditions | Mus musculus | mus musculus | null | null | Yoshida, M., Hanazono, Y., Numoto, N., Ito, N., Oda, M. | 1.36 | X-RAY DIFFRACTION | 0.175 | 0.146 | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8ytp/abangle/8ytp.abangle | sabdab_dataset/8ytp/annotation/8ytp_A_VH.ann | sabdab_dataset/8ytp/annotation/8ytp_A_VL.ann | sabdab_dataset/8ytp/imgt/8ytp_A_H.ann | null | sabdab_dataset/8ytp/sequence/8ytp_raw.pdb | sabdab_dataset/8ytp/sequence/8ytp_A_VH.fa | sabdab_dataset/8ytp/sequence/8ytp_A_VL.fa | sabdab_dataset/8ytp/structure/8ytp.pdb | sabdab_dataset/8ytp/structure/chothia/8ytp.pdb | true | false | validation |
8yub | A | B | 0 | F | protein | null | spike protein s2' | IMMUNE SYSTEM | 10/01/25 | Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A. | 2.49 | X-RAY DIFFRACTION | 0.255 | 0.205 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8yub/abangle/8yub.abangle | sabdab_dataset/8yub/annotation/8yub_A_VH.ann | sabdab_dataset/8yub/annotation/8yub_B_VL.ann | sabdab_dataset/8yub/imgt/8yub_A_H.ann | sabdab_dataset/8yub/imgt/8yub_B_L.ann | sabdab_dataset/8yub/sequence/8yub_raw.pdb | sabdab_dataset/8yub/sequence/8yub_A_VH.fa | sabdab_dataset/8yub/sequence/8yub_B_VL.fa | sabdab_dataset/8yub/structure/8yub.pdb | sabdab_dataset/8yub/structure/chothia/8yub.pdb | true | false | train |
8yub | D | E | 0 | C | protein | null | spike protein s2' | IMMUNE SYSTEM | 10/01/25 | Crystal structure of SARS-CoV-2 ConSp RBD in complex with neutralizing antibody CC25.4 Fab | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A. | 2.49 | X-RAY DIFFRACTION | 0.255 | 0.205 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null | sabdab_dataset/8yub/abangle/8yub.abangle | sabdab_dataset/8yub/annotation/8yub_D_VH.ann | sabdab_dataset/8yub/annotation/8yub_E_VL.ann | sabdab_dataset/8yub/imgt/8yub_D_H.ann | sabdab_dataset/8yub/imgt/8yub_E_L.ann | sabdab_dataset/8yub/sequence/8yub_raw.pdb | sabdab_dataset/8yub/sequence/8yub_D_VH.fa | sabdab_dataset/8yub/sequence/8yub_E_VL.fa | sabdab_dataset/8yub/structure/8yub.pdb | sabdab_dataset/8yub/structure/chothia/8yub.pdb | true | false | train |
8yuc | A | B | 0 | G | protein | null | spike protein s2' | IMMUNE SYSTEM | 10/01/25 | Crystal structure of SARS-CoV-2 ConSp RBD in complex with antibodies PDI222 Fab and COVA1-16 Fab | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A. | 4.51 | X-RAY DIFFRACTION | 0.308 | 0.275 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yuc/abangle/8yuc.abangle | sabdab_dataset/8yuc/annotation/8yuc_A_VH.ann | sabdab_dataset/8yuc/annotation/8yuc_B_VL.ann | sabdab_dataset/8yuc/imgt/8yuc_A_H.ann | sabdab_dataset/8yuc/imgt/8yuc_B_L.ann | sabdab_dataset/8yuc/sequence/8yuc_raw.pdb | sabdab_dataset/8yuc/sequence/8yuc_A_VH.fa | sabdab_dataset/8yuc/sequence/8yuc_B_VL.fa | sabdab_dataset/8yuc/structure/8yuc.pdb | sabdab_dataset/8yuc/structure/chothia/8yuc.pdb | true | false | train |
8yuc | H | L | 0 | G | protein | null | spike protein s2' | IMMUNE SYSTEM | 10/01/25 | Crystal structure of SARS-CoV-2 ConSp RBD in complex with antibodies PDI222 Fab and COVA1-16 Fab | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Kang, J.M., Yuan, M., Han, B.W., Wilson, I.A. | 4.51 | X-RAY DIFFRACTION | 0.308 | 0.275 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null | sabdab_dataset/8yuc/abangle/8yuc.abangle | sabdab_dataset/8yuc/annotation/8yuc_H_VH.ann | sabdab_dataset/8yuc/annotation/8yuc_L_VL.ann | sabdab_dataset/8yuc/imgt/8yuc_H_H.ann | sabdab_dataset/8yuc/imgt/8yuc_L_L.ann | sabdab_dataset/8yuc/sequence/8yuc_raw.pdb | sabdab_dataset/8yuc/sequence/8yuc_H_VH.fa | sabdab_dataset/8yuc/sequence/8yuc_L_VL.fa | sabdab_dataset/8yuc/structure/8yuc.pdb | sabdab_dataset/8yuc/structure/chothia/8yuc.pdb | true | false | train |
8yut | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 01/08/09 | Cryo-EM structure of the amthamine-bound H2R-Gs complex | Homo sapiens; synthetic construct | synthetic construct | null | homo sapiens | homo sapiens | Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y. | 2.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null | null | sabdab_dataset/8yut/annotation/8yut_N_VH.ann | null | sabdab_dataset/8yut/imgt/8yut_N_H.ann | null | sabdab_dataset/8yut/sequence/8yut_raw.pdb | sabdab_dataset/8yut/sequence/8yut_N_VH.fa | null | sabdab_dataset/8yut/structure/8yut.pdb | sabdab_dataset/8yut/structure/chothia/8yut.pdb | false | false | train |
8yuu | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 06/05/24 | Cryo-EM structure of the histamine-bound H3R-Gi complex | Homo sapiens; Mus musculus | mus musculus | null | homo sapiens | homo sapiens | Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y. | 2.7 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yuu/abangle/8yuu.abangle | sabdab_dataset/8yuu/annotation/8yuu_S_VH.ann | sabdab_dataset/8yuu/annotation/8yuu_S_VL.ann | sabdab_dataset/8yuu/imgt/8yuu_S_H.ann | sabdab_dataset/8yuu/imgt/8yuu_S_L.ann | sabdab_dataset/8yuu/sequence/8yuu_raw.pdb | sabdab_dataset/8yuu/sequence/8yuu_S_VH.fa | sabdab_dataset/8yuu/sequence/8yuu_S_VL.fa | sabdab_dataset/8yuu/structure/8yuu.pdb | sabdab_dataset/8yuu/structure/chothia/8yuu.pdb | false | false | train |
8yuv | S | s | 0 | A | G | B | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 01/08/09 | Cryo-EM structure of the immepip-bound H3R-Gi complex | Homo sapiens; Mus musculus | mus musculus | null | homo sapiens | homo sapiens | homo sapiens | Shen, Q., Tang, X., Wen, X., Cheng, S., Xiao, P., Zang, S., Shen, D., Jiang, L., Zheng, Y., Zhang, H., Xu, H., Mao, C., Zhang, M., Hu, W., Sun, J., Chen, Z., Zhang, Y. | 3.0 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null | sabdab_dataset/8yuv/abangle/8yuv.abangle | sabdab_dataset/8yuv/annotation/8yuv_S_VH.ann | sabdab_dataset/8yuv/annotation/8yuv_S_VL.ann | sabdab_dataset/8yuv/imgt/8yuv_S_H.ann | sabdab_dataset/8yuv/imgt/8yuv_S_L.ann | sabdab_dataset/8yuv/sequence/8yuv_raw.pdb | sabdab_dataset/8yuv/sequence/8yuv_S_VH.fa | sabdab_dataset/8yuv/sequence/8yuv_S_VL.fa | sabdab_dataset/8yuv/structure/8yuv.pdb | sabdab_dataset/8yuv/structure/chothia/8yuv.pdb | false | false | train |
8yvj | A | null | 0 | B | protein | null | toxin a | TOXIN/IMMUNE SYSTEM | 12/18/24 | Crystal structure of the C. difficile toxin A CROPs domain fragment 2592-2710 bound to H5.2 nanobody | Camelus dromedarius; Clostridioides difficile 342 | camelus dromedarius | null | clostridioides difficile 342 | Sluchanko, N.N., Varfolomeeva, L.A., Shcheblyakov, D.V., Belyi, Y.F., Logunov, D.Y., Gintsburg, A.L., Popov, V.O., Boyko, K.M. | 1.65 | X-RAY DIFFRACTION | 0.198 | 0.149 | false | true | IGHV1 | null | null | null | null | null | null | null | null | sabdab_dataset/8yvj/annotation/8yvj_A_VH.ann | null | sabdab_dataset/8yvj/imgt/8yvj_A_H.ann | null | sabdab_dataset/8yvj/sequence/8yvj_raw.pdb | sabdab_dataset/8yvj/sequence/8yvj_A_VH.fa | null | sabdab_dataset/8yvj/structure/8yvj.pdb | sabdab_dataset/8yvj/structure/chothia/8yvj.pdb | true | true | train |
8yvk | E | F | 0 | A | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Red knot/Delaware Bay/310/2016 H10N4 in complex with CAV-F6 Fab | Homo sapiens; Influenza A virus (A/red knot/Delaware Bay/310/2016(H10N4)) | homo sapiens | homo sapiens | influenza a virus (a/red knot/delawarebay/310/2016(h10n4)) | Wang, X., Ge, J., Li, X. | 3.09 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvk/abangle/8yvk.abangle | sabdab_dataset/8yvk/annotation/8yvk_E_VH.ann | sabdab_dataset/8yvk/annotation/8yvk_F_VL.ann | sabdab_dataset/8yvk/imgt/8yvk_E_H.ann | sabdab_dataset/8yvk/imgt/8yvk_F_L.ann | sabdab_dataset/8yvk/sequence/8yvk_raw.pdb | sabdab_dataset/8yvk/sequence/8yvk_E_VH.fa | sabdab_dataset/8yvk/sequence/8yvk_F_VL.fa | sabdab_dataset/8yvk/structure/8yvk.pdb | sabdab_dataset/8yvk/structure/chothia/8yvk.pdb | false | false | test |
8yvk | G | H | 0 | B | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Red knot/Delaware Bay/310/2016 H10N4 in complex with CAV-F6 Fab | Homo sapiens; Influenza A virus (A/red knot/Delaware Bay/310/2016(H10N4)) | homo sapiens | homo sapiens | influenza a virus (a/red knot/delawarebay/310/2016(h10n4)) | Wang, X., Ge, J., Li, X. | 3.09 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvk/abangle/8yvk.abangle | sabdab_dataset/8yvk/annotation/8yvk_G_VH.ann | sabdab_dataset/8yvk/annotation/8yvk_H_VL.ann | sabdab_dataset/8yvk/imgt/8yvk_G_H.ann | sabdab_dataset/8yvk/imgt/8yvk_H_L.ann | sabdab_dataset/8yvk/sequence/8yvk_raw.pdb | sabdab_dataset/8yvk/sequence/8yvk_G_VH.fa | sabdab_dataset/8yvk/sequence/8yvk_H_VL.fa | sabdab_dataset/8yvk/structure/8yvk.pdb | sabdab_dataset/8yvk/structure/chothia/8yvk.pdb | false | false | validation |
8yvk | I | J | 0 | C | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Red knot/Delaware Bay/310/2016 H10N4 in complex with CAV-F6 Fab | Homo sapiens; Influenza A virus (A/red knot/Delaware Bay/310/2016(H10N4)) | homo sapiens | homo sapiens | influenza a virus (a/red knot/delawarebay/310/2016(h10n4)) | Wang, X., Ge, J., Li, X. | 3.09 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvk/abangle/8yvk.abangle | sabdab_dataset/8yvk/annotation/8yvk_I_VH.ann | sabdab_dataset/8yvk/annotation/8yvk_J_VL.ann | sabdab_dataset/8yvk/imgt/8yvk_I_H.ann | sabdab_dataset/8yvk/imgt/8yvk_J_L.ann | sabdab_dataset/8yvk/sequence/8yvk_raw.pdb | sabdab_dataset/8yvk/sequence/8yvk_I_VH.fa | sabdab_dataset/8yvk/sequence/8yvk_J_VL.fa | sabdab_dataset/8yvk/structure/8yvk.pdb | sabdab_dataset/8yvk/structure/chothia/8yvk.pdb | false | false | train |
8yvk | K | L | 0 | D | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Red knot/Delaware Bay/310/2016 H10N4 in complex with CAV-F6 Fab | Homo sapiens; Influenza A virus (A/red knot/Delaware Bay/310/2016(H10N4)) | homo sapiens | homo sapiens | influenza a virus (a/red knot/delawarebay/310/2016(h10n4)) | Wang, X., Ge, J., Li, X. | 3.09 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvk/abangle/8yvk.abangle | sabdab_dataset/8yvk/annotation/8yvk_K_VH.ann | sabdab_dataset/8yvk/annotation/8yvk_L_VL.ann | sabdab_dataset/8yvk/imgt/8yvk_K_H.ann | sabdab_dataset/8yvk/imgt/8yvk_L_L.ann | sabdab_dataset/8yvk/sequence/8yvk_raw.pdb | sabdab_dataset/8yvk/sequence/8yvk_K_VH.fa | sabdab_dataset/8yvk/sequence/8yvk_L_VL.fa | sabdab_dataset/8yvk/structure/8yvk.pdb | sabdab_dataset/8yvk/structure/chothia/8yvk.pdb | false | false | train |
8yvl | I | E | 0 | A | protein | null | vasodilator-stimulated phosphoprotein,neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/California/04/2009 HIN1 in complex with CAV-F34 Fab | Homo sapiens; Influenza A virus (A/California/04/2009(H1N1)) | homo sapiens | homo sapiens | homo sapiens, influenza a virus(a/california/04/2009(h1n1)) | Wang, X., Ge, J., Li, X. | 2.47 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvl/abangle/8yvl.abangle | sabdab_dataset/8yvl/annotation/8yvl_I_VH.ann | sabdab_dataset/8yvl/annotation/8yvl_E_VL.ann | sabdab_dataset/8yvl/imgt/8yvl_I_H.ann | sabdab_dataset/8yvl/imgt/8yvl_E_L.ann | sabdab_dataset/8yvl/sequence/8yvl_raw.pdb | sabdab_dataset/8yvl/sequence/8yvl_I_VH.fa | sabdab_dataset/8yvl/sequence/8yvl_E_VL.fa | sabdab_dataset/8yvl/structure/8yvl.pdb | sabdab_dataset/8yvl/structure/chothia/8yvl.pdb | false | false | train |
8yvl | J | H | 0 | B | protein | null | vasodilator-stimulated phosphoprotein,neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/California/04/2009 HIN1 in complex with CAV-F34 Fab | Homo sapiens; Influenza A virus (A/California/04/2009(H1N1)) | homo sapiens | homo sapiens | homo sapiens, influenza a virus(a/california/04/2009(h1n1)) | Wang, X., Ge, J., Li, X. | 2.47 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvl/abangle/8yvl.abangle | sabdab_dataset/8yvl/annotation/8yvl_J_VH.ann | sabdab_dataset/8yvl/annotation/8yvl_H_VL.ann | sabdab_dataset/8yvl/imgt/8yvl_J_H.ann | sabdab_dataset/8yvl/imgt/8yvl_H_L.ann | sabdab_dataset/8yvl/sequence/8yvl_raw.pdb | sabdab_dataset/8yvl/sequence/8yvl_J_VH.fa | sabdab_dataset/8yvl/sequence/8yvl_H_VL.fa | sabdab_dataset/8yvl/structure/8yvl.pdb | sabdab_dataset/8yvl/structure/chothia/8yvl.pdb | false | false | validation |
8yvl | K | G | 0 | D | protein | null | vasodilator-stimulated phosphoprotein,neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/California/04/2009 HIN1 in complex with CAV-F34 Fab | Homo sapiens; Influenza A virus (A/California/04/2009(H1N1)) | homo sapiens | homo sapiens | homo sapiens, influenza a virus(a/california/04/2009(h1n1)) | Wang, X., Ge, J., Li, X. | 2.47 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvl/abangle/8yvl.abangle | sabdab_dataset/8yvl/annotation/8yvl_K_VH.ann | sabdab_dataset/8yvl/annotation/8yvl_G_VL.ann | sabdab_dataset/8yvl/imgt/8yvl_K_H.ann | sabdab_dataset/8yvl/imgt/8yvl_G_L.ann | sabdab_dataset/8yvl/sequence/8yvl_raw.pdb | sabdab_dataset/8yvl/sequence/8yvl_K_VH.fa | sabdab_dataset/8yvl/sequence/8yvl_G_VL.fa | sabdab_dataset/8yvl/structure/8yvl.pdb | sabdab_dataset/8yvl/structure/chothia/8yvl.pdb | false | false | validation |
8yvl | L | F | 0 | C | protein | null | vasodilator-stimulated phosphoprotein,neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/California/04/2009 HIN1 in complex with CAV-F34 Fab | Homo sapiens; Influenza A virus (A/California/04/2009(H1N1)) | homo sapiens | homo sapiens | homo sapiens, influenza a virus(a/california/04/2009(h1n1)) | Wang, X., Ge, J., Li, X. | 2.47 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvl/abangle/8yvl.abangle | sabdab_dataset/8yvl/annotation/8yvl_L_VH.ann | sabdab_dataset/8yvl/annotation/8yvl_F_VL.ann | sabdab_dataset/8yvl/imgt/8yvl_L_H.ann | sabdab_dataset/8yvl/imgt/8yvl_F_L.ann | sabdab_dataset/8yvl/sequence/8yvl_raw.pdb | sabdab_dataset/8yvl/sequence/8yvl_L_VH.fa | sabdab_dataset/8yvl/sequence/8yvl_F_VL.fa | sabdab_dataset/8yvl/structure/8yvl.pdb | sabdab_dataset/8yvl/structure/chothia/8yvl.pdb | false | false | train |
8yvm | F | E | 0 | B | A | protein | protein | NA | NA | neuraminidase | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F34 Fab | Homo sapiens; Influenza A virus | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Wang, X., Ge, J., Li, X. | 3.02 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvm/abangle/8yvm.abangle | sabdab_dataset/8yvm/annotation/8yvm_F_VH.ann | sabdab_dataset/8yvm/annotation/8yvm_E_VL.ann | sabdab_dataset/8yvm/imgt/8yvm_F_H.ann | sabdab_dataset/8yvm/imgt/8yvm_E_L.ann | sabdab_dataset/8yvm/sequence/8yvm_raw.pdb | sabdab_dataset/8yvm/sequence/8yvm_F_VH.fa | sabdab_dataset/8yvm/sequence/8yvm_E_VL.fa | sabdab_dataset/8yvm/structure/8yvm.pdb | sabdab_dataset/8yvm/structure/chothia/8yvm.pdb | false | false | train |
8yvn | E | I | 0 | D | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 07/02/25 | Neuraminidase of A/Switzerland/9715293/2013 H3N2 in complex with CAV-F6 Fab | Homo sapiens; Influenza A virus | homo sapiens | homo sapiens | influenza a virus | Wang, X., Ge, J., Li, X. | 2.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null | sabdab_dataset/8yvn/abangle/8yvn.abangle | sabdab_dataset/8yvn/annotation/8yvn_E_VH.ann | sabdab_dataset/8yvn/annotation/8yvn_I_VL.ann | sabdab_dataset/8yvn/imgt/8yvn_E_H.ann | sabdab_dataset/8yvn/imgt/8yvn_I_L.ann | sabdab_dataset/8yvn/sequence/8yvn_raw.pdb | sabdab_dataset/8yvn/sequence/8yvn_E_VH.fa | sabdab_dataset/8yvn/sequence/8yvn_I_VL.fa | sabdab_dataset/8yvn/structure/8yvn.pdb | sabdab_dataset/8yvn/structure/chothia/8yvn.pdb | false | false | train |
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