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  1. sabdab_dataset/1kiq/abangle/1kiq.abangle +2 -0
  2. sabdab_dataset/1kiq/annotation/1kiq_A_VL.ann +107 -0
  3. sabdab_dataset/1kiq/annotation/1kiq_B_VH.ann +116 -0
  4. sabdab_dataset/1kiq/imgt/1kiq_A_L.ann +3 -0
  5. sabdab_dataset/1kiq/imgt/1kiq_B_H.ann +3 -0
  6. sabdab_dataset/1kiq/sequence/1kiq_A_VL.fa +6 -0
  7. sabdab_dataset/1kiq/sequence/1kiq_B_VH.fa +6 -0
  8. sabdab_dataset/1kiq/sequence/1kiq_raw.pdb +6 -0
  9. sabdab_dataset/1kiq/structure/1kiq.pdb +0 -0
  10. sabdab_dataset/1kiq/structure/chothia/1kiq.pdb +0 -0
  11. sabdab_dataset/1mcd/annotation/1mcd_A_VL.ann +113 -0
  12. sabdab_dataset/1mcd/annotation/1mcd_B_VL.ann +113 -0
  13. sabdab_dataset/1mcd/imgt/1mcd_A_L.ann +4 -0
  14. sabdab_dataset/1mcd/imgt/1mcd_B_L.ann +4 -0
  15. sabdab_dataset/1mcd/sequence/1mcd_A_VL.fa +6 -0
  16. sabdab_dataset/1mcd/sequence/1mcd_B_VL.fa +6 -0
  17. sabdab_dataset/1mcd/sequence/1mcd_raw.pdb +6 -0
  18. sabdab_dataset/1mcd/structure/1mcd.pdb +0 -0
  19. sabdab_dataset/1mcd/structure/chothia/1mcd.pdb +0 -0
  20. sabdab_dataset/2nlj/abangle/2nlj.abangle +2 -0
  21. sabdab_dataset/2nlj/annotation/2nlj_A_VL.ann +109 -0
  22. sabdab_dataset/2nlj/annotation/2nlj_B_VH.ann +118 -0
  23. sabdab_dataset/2nlj/imgt/2nlj_A_L.ann +4 -0
  24. sabdab_dataset/2nlj/imgt/2nlj_B_H.ann +4 -0
  25. sabdab_dataset/2nlj/sequence/2nlj_A_VL.fa +6 -0
  26. sabdab_dataset/2nlj/sequence/2nlj_B_VH.fa +6 -0
  27. sabdab_dataset/2nlj/sequence/2nlj_raw.pdb +6 -0
  28. sabdab_dataset/2nlj/structure/2nlj.pdb +0 -0
  29. sabdab_dataset/2nlj/structure/chothia/2nlj.pdb +0 -0
  30. sabdab_dataset/2w9d/abangle/2w9d.abangle +2 -0
  31. sabdab_dataset/2w9d/annotation/2w9d_H_VH.ann +116 -0
  32. sabdab_dataset/2w9d/annotation/2w9d_L_VL.ann +108 -0
  33. sabdab_dataset/2w9d/imgt/2w9d_H_H.ann +4 -0
  34. sabdab_dataset/2w9d/imgt/2w9d_L_L.ann +4 -0
  35. sabdab_dataset/2w9d/sequence/2w9d_H_VH.fa +6 -0
  36. sabdab_dataset/2w9d/sequence/2w9d_L_VL.fa +6 -0
  37. sabdab_dataset/2w9d/sequence/2w9d_raw.pdb +4 -0
  38. sabdab_dataset/2w9d/structure/2w9d.pdb +0 -0
  39. sabdab_dataset/2w9d/structure/chothia/2w9d.pdb +0 -0
  40. sabdab_dataset/3j2y/abangle/3j2y.abangle +5 -0
  41. sabdab_dataset/3j2y/annotation/3j2y_A_VL.ann +108 -0
  42. sabdab_dataset/3j2y/annotation/3j2y_B_VH.ann +118 -0
  43. sabdab_dataset/3j2y/annotation/3j2y_C_VL.ann +108 -0
  44. sabdab_dataset/3j2y/annotation/3j2y_D_VH.ann +118 -0
  45. sabdab_dataset/3j2y/annotation/3j2y_E_VL.ann +108 -0
  46. sabdab_dataset/3j2y/annotation/3j2y_F_VH.ann +118 -0
  47. sabdab_dataset/3j2y/annotation/3j2y_G_VL.ann +108 -0
  48. sabdab_dataset/3j2y/annotation/3j2y_H_VH.ann +118 -0
  49. sabdab_dataset/3j2y/imgt/3j2y_A_L.ann +4 -0
  50. sabdab_dataset/3j2y/imgt/3j2y_B_H.ann +4 -0
sabdab_dataset/1kiq/abangle/1kiq.abangle ADDED
@@ -0,0 +1,2 @@
 
 
 
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+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 1kiq B A 0 -58.92 69.36 120.21 120.37 79.69 16.23
sabdab_dataset/1kiq/annotation/1kiq_A_VL.ann ADDED
@@ -0,0 +1,107 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ L1 D
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sabdab_dataset/1kiq/annotation/1kiq_B_VH.ann ADDED
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sabdab_dataset/1kiq/imgt/1kiq_A_L.ann ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
3
+ V Mus_musculus IGKV12-41*02 IG IGKV IGKV12 IGKV12-41 NA True
sabdab_dataset/1kiq/imgt/1kiq_B_H.ann ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
3
+ V Mus_musculus IGHV2-6-7*01 IG IGHV IGHV2 IGHV2-6-7 NA True
sabdab_dataset/1kiq/sequence/1kiq_A_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1kiq_A|seqres|full
2
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
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+ >1kiq_A|seqres|region: L
4
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
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+ >1kiq_A|structure|full
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+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
sabdab_dataset/1kiq/sequence/1kiq_B_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1kiq_B|seqres|full
2
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDFRLDYWGQGTTLTVSS
3
+ >1kiq_B|seqres|region: H
4
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDFRLDYWGQGTTLTVSS
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+ >1kiq_B|structure|full
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+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDFRLDYWGQGTTLTVSS
sabdab_dataset/1kiq/sequence/1kiq_raw.pdb ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1kiq_A|type: L
2
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
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+ >1kiq_C|type: non-ab
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+ KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
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+ >1kiq_B|type: H
6
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDFRLDYWGQGTTLTVSS
sabdab_dataset/1kiq/structure/1kiq.pdb ADDED
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sabdab_dataset/1kiq/structure/chothia/1kiq.pdb ADDED
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sabdab_dataset/1mcd/annotation/1mcd_A_VL.ann ADDED
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sabdab_dataset/1mcd/annotation/1mcd_B_VL.ann ADDED
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sabdab_dataset/1mcd/imgt/1mcd_A_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Homo_sapiens IGLC1*02 IG IGLC IGLC1 IGLC1 NA True
3
+ J Homo_sapiens IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
4
+ V Homo_sapiens IGLV2-8*01 IG IGLV IGLV2 IGLV2-8 NA True
sabdab_dataset/1mcd/imgt/1mcd_B_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Homo_sapiens IGLC1*02 IG IGLC IGLC1 IGLC1 NA True
3
+ J Homo_sapiens IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
4
+ V Homo_sapiens IGLV2-8*01 IG IGLV IGLV2 IGLV2-8 NA True
sabdab_dataset/1mcd/sequence/1mcd_A_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1mcd_A|seqres|full
2
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
3
+ >1mcd_A|seqres|region: L
4
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQP-------------------------------------------------------------------------------------------------------
5
+ >1mcd_A|structure|full
6
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
sabdab_dataset/1mcd/sequence/1mcd_B_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1mcd_B|seqres|full
2
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
3
+ >1mcd_B|seqres|region: L
4
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQP-------------------------------------------------------------------------------------------------------
5
+ >1mcd_B|structure|full
6
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
sabdab_dataset/1mcd/sequence/1mcd_raw.pdb ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1mcd_A|type: L
2
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
3
+ >1mcd_P|type: non-ab
4
+ XFXHPX
5
+ >1mcd_B|type: L
6
+ PSALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
sabdab_dataset/1mcd/structure/1mcd.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/1mcd/structure/chothia/1mcd.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2nlj/abangle/2nlj.abangle ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 2nlj B A 0 -53.96 70.72 113.95 123.21 83.16 16.53
sabdab_dataset/2nlj/annotation/2nlj_A_VL.ann ADDED
@@ -0,0 +1,109 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ L1 D
2
+ L2 I
3
+ L3 L
4
+ L4 L
5
+ L5 T
6
+ L6 Q
7
+ L7 S
8
+ L8 P
9
+ L9 A
10
+ L10 I
11
+ L11 L
12
+ L12 S
13
+ L13 V
14
+ L14 S
15
+ L15 P
16
+ L16 G
17
+ L17 E
18
+ L18 R
19
+ L19 V
20
+ L20 S
21
+ L21 F
22
+ L22 S
23
+ L23 C
24
+ L24 R
25
+ L25 A
26
+ L26 S
27
+ L27 Q
28
+ L28 S
29
+ L29 I
30
+ L30 G
31
+ L31 T
32
+ L32 D
33
+ L33 I
34
+ L34 H
35
+ L35 W
36
+ L36 Y
37
+ L37 Q
38
+ L38 Q
39
+ L39 R
40
+ L40 T
41
+ L41 N
42
+ L42 G
43
+ L43 S
44
+ L44 P
45
+ L45 R
46
+ L46 L
47
+ L47 L
48
+ L48 I
49
+ L49 K
50
+ L50 Y
51
+ L51 A
52
+ L52 S
53
+ L53 E
54
+ L54 S
55
+ L55 I
56
+ L56 S
57
+ L57 G
58
+ L58 I
59
+ L59 P
60
+ L60 S
61
+ L61 R
62
+ L62 F
63
+ L63 S
64
+ L64 G
65
+ L65 S
66
+ L66 G
67
+ L67 S
68
+ L68 G
69
+ L69 T
70
+ L70 D
71
+ L71 F
72
+ L72 T
73
+ L73 L
74
+ L74 S
75
+ L75 I
76
+ L76 N
77
+ L77 S
78
+ L78 V
79
+ L79 E
80
+ L80 S
81
+ L81 E
82
+ L82 D
83
+ L83 I
84
+ L84 A
85
+ L85 N
86
+ L86 Y
87
+ L87 Y
88
+ L88 C
89
+ L89 Q
90
+ L90 Q
91
+ L91 S
92
+ L92 N
93
+ L93 R
94
+ L94 W
95
+ L95 P
96
+ L96 F
97
+ L97 T
98
+ L98 F
99
+ L99 G
100
+ L100 S
101
+ L101 G
102
+ L102 T
103
+ L103 K
104
+ L104 L
105
+ L105 E
106
+ L106 I
107
+ L107 K
108
+ L108 R
109
+ L109 A
sabdab_dataset/2nlj/annotation/2nlj_B_VH.ann ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 Q
2
+ H2 V
3
+ H3 Q
4
+ H4 L
5
+ H5 Q
6
+ H6 Q
7
+ H7 P
8
+ H8 G
9
+ H9 A
10
+ H10 E
11
+ H11 L
12
+ H12 V
13
+ H13 K
14
+ H14 P
15
+ H15 G
16
+ H16 A
17
+ H17 S
18
+ H18 V
19
+ H19 K
20
+ H20 L
21
+ H21 S
22
+ H22 C
23
+ H23 K
24
+ H24 A
25
+ H25 S
26
+ H26 G
27
+ H27 Y
28
+ H28 T
29
+ H29 F
30
+ H30 T
31
+ H31 S
32
+ H32 D
33
+ H33 W
34
+ H34 I
35
+ H35 H
36
+ H36 W
37
+ H37 V
38
+ H38 K
39
+ H39 Q
40
+ H40 R
41
+ H41 P
42
+ H42 G
43
+ H43 H
44
+ H44 G
45
+ H45 L
46
+ H46 E
47
+ H47 W
48
+ H48 I
49
+ H49 G
50
+ H50 E
51
+ H51 I
52
+ H52 I
53
+ H52A P
54
+ H53 S
55
+ H54 Y
56
+ H55 G
57
+ H56 R
58
+ H57 A
59
+ H58 N
60
+ H59 Y
61
+ H60 N
62
+ H61 E
63
+ H62 K
64
+ H63 I
65
+ H64 Q
66
+ H65 K
67
+ H66 K
68
+ H67 A
69
+ H68 T
70
+ H69 L
71
+ H70 T
72
+ H71 A
73
+ H72 D
74
+ H73 K
75
+ H74 S
76
+ H75 S
77
+ H76 S
78
+ H77 T
79
+ H78 A
80
+ H79 F
81
+ H80 M
82
+ H81 Q
83
+ H82 L
84
+ H82A S
85
+ H82B S
86
+ H82C L
87
+ H83 T
88
+ H84 S
89
+ H85 E
90
+ H86 D
91
+ H87 S
92
+ H88 A
93
+ H89 V
94
+ H90 Y
95
+ H91 Y
96
+ H92 C
97
+ H93 A
98
+ H94 R
99
+ H95 E
100
+ H96 R
101
+ H97 G
102
+ H98 D
103
+ H99 G
104
+ H100 Y
105
+ H100A F
106
+ H101 A
107
+ H102 V
108
+ H103 W
109
+ H104 G
110
+ H105 A
111
+ H106 G
112
+ H107 T
113
+ H108 T
114
+ H109 V
115
+ H110 T
116
+ H111 V
117
+ H112 S
118
+ H113 S
sabdab_dataset/2nlj/imgt/2nlj_A_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ4*01 IG IGKJ IGKJ4 IGKJ4 NA True
4
+ V Mus_musculus IGKV5-48*01 IG IGKV IGKV5 IGKV5-48 NA True
sabdab_dataset/2nlj/imgt/2nlj_B_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
3
+ J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
4
+ V Mus_musculus IGHV1S81*02 IG IGHV IGHV1 IGHV1S81 NA True
sabdab_dataset/2nlj/sequence/2nlj_A_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2nlj_A|seqres|full
2
+ DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >2nlj_A|seqres|region: L
4
+ DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRA-------------------------------------------------------------------------------------------------------
5
+ >2nlj_A|structure|full
6
+ DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
sabdab_dataset/2nlj/sequence/2nlj_B_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2nlj_B|seqres|full
2
+ QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD
3
+ >2nlj_B|seqres|region: H
4
+ QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSS-----------------------------------------------------------------------------------------------------
5
+ >2nlj_B|structure|full
6
+ QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPR-
sabdab_dataset/2nlj/sequence/2nlj_raw.pdb ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2nlj_A|type: L
2
+ DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >2nlj_C|type: non-ab
4
+ MAPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQERRGH
5
+ >2nlj_B|type: H
6
+ QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD
sabdab_dataset/2nlj/structure/2nlj.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2nlj/structure/chothia/2nlj.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2w9d/abangle/2w9d.abangle ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 2w9d H L 0 -56.83 70.96 116.69 118.04 84.69 16.26
sabdab_dataset/2w9d/annotation/2w9d_H_VH.ann ADDED
@@ -0,0 +1,116 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 E
2
+ H2 V
3
+ H3 Q
4
+ H4 L
5
+ H5 Q
6
+ H6 Q
7
+ H7 S
8
+ H8 G
9
+ H9 P
10
+ H10 E
11
+ H11 L
12
+ H12 V
13
+ H13 K
14
+ H14 P
15
+ H15 G
16
+ H16 S
17
+ H17 S
18
+ H18 V
19
+ H19 K
20
+ H20 I
21
+ H21 S
22
+ H22 C
23
+ H23 K
24
+ H24 A
25
+ H25 S
26
+ H26 R
27
+ H27 N
28
+ H28 T
29
+ H29 F
30
+ H30 T
31
+ H31 D
32
+ H32 Y
33
+ H33 N
34
+ H34 L
35
+ H35 D
36
+ H36 W
37
+ H37 V
38
+ H38 K
39
+ H39 Q
40
+ H40 S
41
+ H41 H
42
+ H42 G
43
+ H43 K
44
+ H44 T
45
+ H45 L
46
+ H46 E
47
+ H47 W
48
+ H48 I
49
+ H49 G
50
+ H50 N
51
+ H51 V
52
+ H52 Y
53
+ H52A P
54
+ H53 N
55
+ H54 N
56
+ H55 G
57
+ H56 V
58
+ H57 T
59
+ H58 G
60
+ H59 Y
61
+ H60 N
62
+ H61 Q
63
+ H62 K
64
+ H63 F
65
+ H64 R
66
+ H65 G
67
+ H66 K
68
+ H67 A
69
+ H68 T
70
+ H69 L
71
+ H70 T
72
+ H71 V
73
+ H72 D
74
+ H73 K
75
+ H74 S
76
+ H75 S
77
+ H76 S
78
+ H77 T
79
+ H78 A
80
+ H79 Y
81
+ H80 M
82
+ H81 E
83
+ H82 L
84
+ H82A H
85
+ H82B S
86
+ H82C L
87
+ H83 T
88
+ H84 S
89
+ H85 E
90
+ H86 D
91
+ H87 S
92
+ H88 A
93
+ H89 V
94
+ H90 Y
95
+ H91 Y
96
+ H92 C
97
+ H93 A
98
+ H94 L
99
+ H95 Y
100
+ H96 Y
101
+ H97 Y
102
+ H98 D
103
+ H99 V
104
+ H101 S
105
+ H102 Y
106
+ H103 W
107
+ H104 G
108
+ H105 Q
109
+ H106 G
110
+ H107 T
111
+ H108 L
112
+ H109 V
113
+ H110 T
114
+ H111 V
115
+ H112 S
116
+ H113 S
sabdab_dataset/2w9d/annotation/2w9d_L_VL.ann ADDED
@@ -0,0 +1,108 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ L1 E
2
+ L2 I
3
+ L3 V
4
+ L4 L
5
+ L5 T
6
+ L6 Q
7
+ L7 S
8
+ L8 P
9
+ L9 A
10
+ L10 I
11
+ L11 M
12
+ L12 S
13
+ L13 A
14
+ L14 S
15
+ L15 P
16
+ L16 G
17
+ L17 E
18
+ L18 K
19
+ L19 V
20
+ L20 T
21
+ L21 M
22
+ L22 T
23
+ L23 C
24
+ L24 S
25
+ L25 A
26
+ L26 S
27
+ L27 S
28
+ L28 S
29
+ L29 V
30
+ L30 S
31
+ L32 Y
32
+ L33 M
33
+ L34 H
34
+ L35 W
35
+ L36 Y
36
+ L37 Q
37
+ L38 Q
38
+ L39 K
39
+ L40 S
40
+ L41 G
41
+ L42 T
42
+ L43 S
43
+ L44 P
44
+ L45 K
45
+ L46 R
46
+ L47 W
47
+ L48 I
48
+ L49 Y
49
+ L50 D
50
+ L51 T
51
+ L52 S
52
+ L53 K
53
+ L54 L
54
+ L55 A
55
+ L56 S
56
+ L57 G
57
+ L58 V
58
+ L59 P
59
+ L60 A
60
+ L61 R
61
+ L62 F
62
+ L63 S
63
+ L64 G
64
+ L65 S
65
+ L66 G
66
+ L67 S
67
+ L68 G
68
+ L69 T
69
+ L70 S
70
+ L71 Y
71
+ L72 S
72
+ L73 L
73
+ L74 T
74
+ L75 I
75
+ L76 S
76
+ L77 S
77
+ L78 M
78
+ L79 E
79
+ L80 A
80
+ L81 E
81
+ L82 D
82
+ L83 A
83
+ L84 A
84
+ L85 T
85
+ L86 Y
86
+ L87 F
87
+ L88 C
88
+ L89 H
89
+ L90 Q
90
+ L91 W
91
+ L92 R
92
+ L93 S
93
+ L94 N
94
+ L95 P
95
+ L96 Y
96
+ L97 T
97
+ L98 F
98
+ L99 G
99
+ L100 G
100
+ L101 G
101
+ L102 T
102
+ L103 K
103
+ L104 L
104
+ L105 E
105
+ L106 I
106
+ L107 K
107
+ L108 R
108
+ L109 A
sabdab_dataset/2w9d/imgt/2w9d_H_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
3
+ J Mus_musculus IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
4
+ V Mus_musculus IGHV1-34*02 IG IGHV IGHV1 IGHV1-34 NA True
sabdab_dataset/2w9d/imgt/2w9d_L_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ2*01 IG IGKJ IGKJ2 IGKJ2 NA True
4
+ V Mus_musculus IGKV4-59*01 IG IGKV IGKV4 IGKV4-59 NA True
sabdab_dataset/2w9d/sequence/2w9d_H_VH.fa ADDED
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+ >2w9d_H|seqres|full
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+ >2w9d_H|seqres|region: H
4
+ EVQLQQSGPELVKPGSSVKISCKASRNTFTDYNLDWVKQSHGKTLEWIGNVYPNNGVTGYNQKFRGKATLTVDKSSSTAYMELHSLTSEDSAVYYCALYYYDVSYWGQGTLVTVSS---------------------------------------------------------------------------------------------------
5
+ >2w9d_H|structure|full
6
+ EVQLQQSGPELVKPGSSVKISCKASRNTFTDYNLDWVKQSHGKTLEWIGNVYPNNGVTGYNQKFRGKATLTVDKSSSTAYMELHSLTSEDSAVYYCALYYYDVSYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQSVTCNVAHPASSTKVDKKITPR
sabdab_dataset/2w9d/sequence/2w9d_L_VL.fa ADDED
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+ >2w9d_L|seqres|full
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+ EIVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
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+ >2w9d_L|seqres|region: L
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+ EIVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRA--------------------------------------------------------------------------------------------------------
5
+ >2w9d_L|structure|full
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+ -IVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN-
sabdab_dataset/2w9d/sequence/2w9d_raw.pdb ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ >2w9d_H|type: H
2
+ EVQLQQSGPELVKPGSSVKISCKASRNTFTDYNLDWVKQSHGKTLEWIGNVYPNNGVTGYNQKFRGKATLTVDKSSSTAYMELHSLTSEDSAVYYCALYYYDVSYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQSVTCNVAHPASSTKVDKKITPR
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+ >2w9d_L|type: L
4
+ EIVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
sabdab_dataset/2w9d/structure/2w9d.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2w9d/structure/chothia/2w9d.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/3j2y/abangle/3j2y.abangle ADDED
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1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 3j2y B A 0 -62.55 71.91 115.84 119.32 83.30 16.38
3
+ 3j2y H G 0 -62.55 71.91 115.84 119.32 83.30 16.38
4
+ 3j2y D C 0 -62.55 71.91 115.84 119.32 83.30 16.38
5
+ 3j2y F E 0 -62.55 71.90 115.84 119.32 83.30 16.38
sabdab_dataset/3j2y/annotation/3j2y_A_VL.ann ADDED
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1
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sabdab_dataset/3j2y/annotation/3j2y_B_VH.ann ADDED
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114
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115
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116
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117
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118
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sabdab_dataset/3j2y/annotation/3j2y_C_VL.ann ADDED
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1
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25
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108
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sabdab_dataset/3j2y/annotation/3j2y_D_VH.ann ADDED
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1
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2
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3
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4
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7
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32
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48
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54
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57
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115
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116
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117
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118
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sabdab_dataset/3j2y/annotation/3j2y_E_VL.ann ADDED
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24
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25
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33
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35
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51
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52
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53
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54
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55
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56
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57
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58
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61
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63
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65
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67
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79
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89
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104
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105
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106
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107
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108
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sabdab_dataset/3j2y/annotation/3j2y_F_VH.ann ADDED
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1
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2
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3
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4
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5
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6
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7
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8
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23
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24
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47
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48
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49
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50
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51
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52
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53
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54
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55
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67
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73
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74
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75
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76
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77
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@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
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3
+ J Mus_Musculus IGKJ5*01 IG IGKJ ? IGKJ5 NA False
4
+ V Mus_Musculus IGKV4-55*01 IG IGKV IGKV4 IGKV4-55 NA False
sabdab_dataset/3j2y/imgt/3j2y_B_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_Musculus IGHG2C*01 IG IGHC ? IGHG2C IGg False
3
+ J Mus_Musculus IGHJ1*03 IG IGHJ ? IGHJ1 NA False
4
+ V Mus_Musculus IGHV1-52*01 IG IGHV IGHV1 IGHV1-52 NA False