Add files using upload-large-folder tool
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- sabdab_dataset/1cz8/abangle/1cz8.abangle +3 -0
- sabdab_dataset/1cz8/annotation/1cz8_H_VH.ann +123 -0
- sabdab_dataset/1cz8/annotation/1cz8_L_VL.ann +110 -0
- sabdab_dataset/1cz8/annotation/1cz8_X_VL.ann +110 -0
- sabdab_dataset/1cz8/annotation/1cz8_Y_VH.ann +123 -0
- sabdab_dataset/1cz8/imgt/1cz8_H_H.ann +4 -0
- sabdab_dataset/1cz8/imgt/1cz8_L_L.ann +4 -0
- sabdab_dataset/1cz8/imgt/1cz8_X_L.ann +4 -0
- sabdab_dataset/1cz8/imgt/1cz8_Y_H.ann +4 -0
- sabdab_dataset/1cz8/sequence/1cz8_H_VH.fa +6 -0
- sabdab_dataset/1cz8/sequence/1cz8_L_VL.fa +6 -0
- sabdab_dataset/1cz8/sequence/1cz8_X_VL.fa +6 -0
- sabdab_dataset/1cz8/sequence/1cz8_Y_VH.fa +6 -0
- sabdab_dataset/1cz8/sequence/1cz8_raw.pdb +12 -0
- sabdab_dataset/1cz8/structure/1cz8.pdb +0 -0
- sabdab_dataset/1cz8/structure/chothia/1cz8.pdb +0 -0
- sabdab_dataset/2p7t/abangle/2p7t.abangle +2 -0
- sabdab_dataset/2p7t/annotation/2p7t_A_VH.ann +118 -0
- sabdab_dataset/2p7t/annotation/2p7t_B_VL.ann +109 -0
- sabdab_dataset/2p7t/imgt/2p7t_A_H.ann +4 -0
- sabdab_dataset/2p7t/imgt/2p7t_B_L.ann +4 -0
- sabdab_dataset/2p7t/sequence/2p7t_A_VH.fa +6 -0
- sabdab_dataset/2p7t/sequence/2p7t_B_VL.fa +6 -0
- sabdab_dataset/2p7t/sequence/2p7t_raw.pdb +6 -0
- sabdab_dataset/2p7t/structure/2p7t.pdb +0 -0
- sabdab_dataset/2p7t/structure/chothia/2p7t.pdb +0 -0
- sabdab_dataset/2vdo/abangle/2vdo.abangle +2 -0
- sabdab_dataset/2vdo/annotation/2vdo_H_VH.ann +119 -0
- sabdab_dataset/2vdo/annotation/2vdo_L_VL.ann +109 -0
- sabdab_dataset/2vdo/imgt/2vdo_H_H.ann +4 -0
- sabdab_dataset/2vdo/imgt/2vdo_L_L.ann +4 -0
- sabdab_dataset/2vdo/sequence/2vdo_H_VH.fa +6 -0
- sabdab_dataset/2vdo/sequence/2vdo_L_VL.fa +6 -0
- sabdab_dataset/2vdo/sequence/2vdo_raw.pdb +10 -0
- sabdab_dataset/2vdo/structure/2vdo.pdb +0 -0
- sabdab_dataset/2vdo/structure/chothia/2vdo.pdb +0 -0
- sabdab_dataset/2x1q/annotation/2x1q_A_VH.ann +127 -0
- sabdab_dataset/2x1q/annotation/2x1q_B_VH.ann +127 -0
- sabdab_dataset/2x1q/imgt/2x1q_A_H.ann +3 -0
- sabdab_dataset/2x1q/imgt/2x1q_B_H.ann +3 -0
- sabdab_dataset/2x1q/sequence/2x1q_A_VH.fa +6 -0
- sabdab_dataset/2x1q/sequence/2x1q_B_VH.fa +6 -0
- sabdab_dataset/2x1q/sequence/2x1q_raw.pdb +4 -0
- sabdab_dataset/2x1q/structure/2x1q.pdb +0 -0
- sabdab_dataset/2x1q/structure/chothia/2x1q.pdb +0 -0
- sabdab_dataset/3jbe/annotation/3jbe_7_VH.ann +126 -0
- sabdab_dataset/3jbe/imgt/3jbe_7_H.ann +3 -0
- sabdab_dataset/3jbe/sequence/3jbe_7_VH.fa +6 -0
- sabdab_dataset/3jbe/sequence/3jbe_raw.pdb +10 -0
- sabdab_dataset/3jbe/structure/3jbe.pdb +0 -0
sabdab_dataset/1cz8/abangle/1cz8.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
1cz8 H L 0 -60.36 74.34 118.41 120.78 83.27 16.23
|
| 3 |
+
1cz8 Y X 0 -58.74 74.00 118.04 120.88 84.28 16.28
|
sabdab_dataset/1cz8/annotation/1cz8_H_VH.ann
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 D
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 H
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 G
|
| 34 |
+
H34 M
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 T
|
| 56 |
+
H55 G
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 A
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 R
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 A
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 K
|
| 99 |
+
H95 Y
|
| 100 |
+
H96 P
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A T
|
| 106 |
+
H100B S
|
| 107 |
+
H100C H
|
| 108 |
+
H100D W
|
| 109 |
+
H100E Y
|
| 110 |
+
H100F F
|
| 111 |
+
H101 D
|
| 112 |
+
H102 V
|
| 113 |
+
H103 W
|
| 114 |
+
H104 G
|
| 115 |
+
H105 Q
|
| 116 |
+
H106 G
|
| 117 |
+
H107 T
|
| 118 |
+
H108 L
|
| 119 |
+
H109 V
|
| 120 |
+
H110 T
|
| 121 |
+
H111 V
|
| 122 |
+
H112 S
|
| 123 |
+
H113 S
|
sabdab_dataset/1cz8/annotation/1cz8_L_VL.ann
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 S
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 S
|
| 31 |
+
L31 N
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 L
|
| 34 |
+
L34 N
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 V
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 F
|
| 51 |
+
L51 T
|
| 52 |
+
L52 S
|
| 53 |
+
L53 S
|
| 54 |
+
L54 L
|
| 55 |
+
L55 H
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Y
|
| 92 |
+
L92 S
|
| 93 |
+
L93 T
|
| 94 |
+
L94 V
|
| 95 |
+
L95 P
|
| 96 |
+
L96 W
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 Q
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 V
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 T
|
| 110 |
+
L110 V
|
sabdab_dataset/1cz8/annotation/1cz8_X_VL.ann
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 Q
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 V
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 S
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 D
|
| 29 |
+
L29 I
|
| 30 |
+
L30 S
|
| 31 |
+
L31 N
|
| 32 |
+
L32 Y
|
| 33 |
+
L33 L
|
| 34 |
+
L34 N
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 A
|
| 44 |
+
L44 P
|
| 45 |
+
L45 K
|
| 46 |
+
L46 V
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 F
|
| 51 |
+
L51 T
|
| 52 |
+
L52 S
|
| 53 |
+
L53 S
|
| 54 |
+
L54 L
|
| 55 |
+
L55 H
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 Q
|
| 80 |
+
L80 P
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 T
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Y
|
| 92 |
+
L92 S
|
| 93 |
+
L93 T
|
| 94 |
+
L94 V
|
| 95 |
+
L95 P
|
| 96 |
+
L96 W
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 Q
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 V
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 T
|
| 110 |
+
L110 V
|
sabdab_dataset/1cz8/annotation/1cz8_Y_VH.ann
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 D
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 H
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 G
|
| 34 |
+
H34 M
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 G
|
| 50 |
+
H50 W
|
| 51 |
+
H51 I
|
| 52 |
+
H52 N
|
| 53 |
+
H52A T
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 T
|
| 56 |
+
H55 G
|
| 57 |
+
H56 E
|
| 58 |
+
H57 P
|
| 59 |
+
H58 T
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 A
|
| 63 |
+
H62 D
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 R
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 L
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 K
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 A
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 K
|
| 99 |
+
H95 Y
|
| 100 |
+
H96 P
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 G
|
| 105 |
+
H100A T
|
| 106 |
+
H100B S
|
| 107 |
+
H100C H
|
| 108 |
+
H100D W
|
| 109 |
+
H100E Y
|
| 110 |
+
H100F F
|
| 111 |
+
H101 D
|
| 112 |
+
H102 V
|
| 113 |
+
H103 W
|
| 114 |
+
H104 G
|
| 115 |
+
H105 Q
|
| 116 |
+
H106 G
|
| 117 |
+
H107 T
|
| 118 |
+
H108 L
|
| 119 |
+
H109 V
|
| 120 |
+
H110 T
|
| 121 |
+
H111 V
|
| 122 |
+
H112 S
|
| 123 |
+
H113 S
|
sabdab_dataset/1cz8/imgt/1cz8_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 4 |
+
V Homo_sapiens IGHV7-4-1*02 IG IGHV IGHV7 IGHV7-4-1 NA True
|
sabdab_dataset/1cz8/imgt/1cz8_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Homo_sapiens IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Homo_sapiens IGKV1-33*01 IG IGKV IGKV1 IGKV1-33 NA True
|
sabdab_dataset/1cz8/imgt/1cz8_X_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Homo_sapiens IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Homo_sapiens IGKV1-33*01 IG IGKV IGKV1 IGKV1-33 NA True
|
sabdab_dataset/1cz8/imgt/1cz8_Y_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
|
| 4 |
+
V Homo_sapiens IGHV7-4-1*02 IG IGHV IGHV7 IGHV7-4-1 NA True
|
sabdab_dataset/1cz8/sequence/1cz8_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cz8_H|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
| 3 |
+
>1cz8_H|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSS-----------------------------------------------------------------------------------------------
|
| 5 |
+
>1cz8_H|structure|full
|
| 6 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
sabdab_dataset/1cz8/sequence/1cz8_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cz8_L|seqres|full
|
| 2 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
| 3 |
+
>1cz8_L|seqres|region: L
|
| 4 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTV-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1cz8_L|structure|full
|
| 6 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
sabdab_dataset/1cz8/sequence/1cz8_X_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cz8_X|seqres|full
|
| 2 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
| 3 |
+
>1cz8_X|seqres|region: L
|
| 4 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTV-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1cz8_X|structure|full
|
| 6 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
sabdab_dataset/1cz8/sequence/1cz8_Y_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cz8_Y|seqres|full
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
| 3 |
+
>1cz8_Y|seqres|region: H
|
| 4 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSS-----------------------------------------------------------------------------------------------
|
| 5 |
+
>1cz8_Y|structure|full
|
| 6 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
sabdab_dataset/1cz8/sequence/1cz8_raw.pdb
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1cz8_H|type: H
|
| 2 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
| 3 |
+
>1cz8_L|type: L
|
| 4 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
| 5 |
+
>1cz8_W|type: non-ab
|
| 6 |
+
VVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
|
| 7 |
+
>1cz8_V|type: non-ab
|
| 8 |
+
VVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
|
| 9 |
+
>1cz8_Y|type: H
|
| 10 |
+
EVQLVESGGGLVQPGGSLRLSCAASGYDFTHYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
|
| 11 |
+
>1cz8_X|type: L
|
| 12 |
+
DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
|
sabdab_dataset/1cz8/structure/1cz8.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1cz8/structure/chothia/1cz8.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2p7t/abangle/2p7t.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
2p7t A B 0 -53.91 70.47 113.69 123.37 83.42 16.47
|
sabdab_dataset/2p7t/annotation/2p7t_A_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 D
|
| 33 |
+
H33 W
|
| 34 |
+
H34 I
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 H
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 E
|
| 51 |
+
H51 I
|
| 52 |
+
H52 I
|
| 53 |
+
H52A P
|
| 54 |
+
H53 S
|
| 55 |
+
H54 Y
|
| 56 |
+
H55 G
|
| 57 |
+
H56 R
|
| 58 |
+
H57 A
|
| 59 |
+
H58 N
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 E
|
| 63 |
+
H62 K
|
| 64 |
+
H63 I
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 K
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 F
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 E
|
| 100 |
+
H96 R
|
| 101 |
+
H97 G
|
| 102 |
+
H98 D
|
| 103 |
+
H99 G
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A F
|
| 106 |
+
H101 A
|
| 107 |
+
H102 V
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 A
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 T
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/2p7t/annotation/2p7t_B_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 I
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 R
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 F
|
| 22 |
+
L22 S
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 S
|
| 29 |
+
L29 I
|
| 30 |
+
L30 G
|
| 31 |
+
L31 T
|
| 32 |
+
L32 D
|
| 33 |
+
L33 I
|
| 34 |
+
L34 H
|
| 35 |
+
L35 W
|
| 36 |
+
L36 Y
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 R
|
| 40 |
+
L40 T
|
| 41 |
+
L41 N
|
| 42 |
+
L42 G
|
| 43 |
+
L43 S
|
| 44 |
+
L44 P
|
| 45 |
+
L45 R
|
| 46 |
+
L46 L
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 K
|
| 50 |
+
L50 Y
|
| 51 |
+
L51 A
|
| 52 |
+
L52 S
|
| 53 |
+
L53 E
|
| 54 |
+
L54 S
|
| 55 |
+
L55 I
|
| 56 |
+
L56 S
|
| 57 |
+
L57 G
|
| 58 |
+
L58 I
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 T
|
| 70 |
+
L70 D
|
| 71 |
+
L71 F
|
| 72 |
+
L72 T
|
| 73 |
+
L73 L
|
| 74 |
+
L74 S
|
| 75 |
+
L75 I
|
| 76 |
+
L76 N
|
| 77 |
+
L77 S
|
| 78 |
+
L78 V
|
| 79 |
+
L79 E
|
| 80 |
+
L80 S
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 I
|
| 84 |
+
L84 A
|
| 85 |
+
L85 N
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 Q
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 S
|
| 92 |
+
L92 N
|
| 93 |
+
L93 R
|
| 94 |
+
L94 W
|
| 95 |
+
L95 P
|
| 96 |
+
L96 F
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 S
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/2p7t/imgt/2p7t_A_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_Musculus IGHG1*02 IG IGHC ? IGHG1 IGg False
|
| 3 |
+
J Mus_Musculus IGHJ1*01 IG IGHJ ? IGHJ1 NA False
|
| 4 |
+
V Mus_Musculus IGHV1S81*02 IG IGHV IGHV1 IGHV1S81 NA False
|
sabdab_dataset/2p7t/imgt/2p7t_B_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_Musculus IGKC*03 IG IGKC ? IGKC NA False
|
| 3 |
+
J Mus_Musculus IGKJ4*01 IG IGKJ ? IGKJ4 NA False
|
| 4 |
+
V Mus_Musculus IGKV5-48*01 IG IGKV IGKV5 IGKV5-48 NA False
|
sabdab_dataset/2p7t/sequence/2p7t_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2p7t_A|seqres|full
|
| 2 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD
|
| 3 |
+
>2p7t_A|seqres|region: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSS-----------------------------------------------------------------------------------------------------
|
| 5 |
+
>2p7t_A|structure|full
|
| 6 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD
|
sabdab_dataset/2p7t/sequence/2p7t_B_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2p7t_B|seqres|full
|
| 2 |
+
DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
|
| 3 |
+
>2p7t_B|seqres|region: L
|
| 4 |
+
DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRA-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2p7t_B|structure|full
|
| 6 |
+
DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
|
sabdab_dataset/2p7t/sequence/2p7t_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2p7t_A|type: H
|
| 2 |
+
QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD
|
| 3 |
+
>2p7t_C|type: non-ab
|
| 4 |
+
SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH
|
| 5 |
+
>2p7t_B|type: L
|
| 6 |
+
DILLTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
|
sabdab_dataset/2p7t/structure/2p7t.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2p7t/structure/chothia/2p7t.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2vdo/abangle/2vdo.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
2vdo H L 0 -60.99 69.15 111.68 119.84 81.39 15.77
|
sabdab_dataset/2vdo/annotation/2vdo_H_VH.ann
ADDED
|
@@ -0,0 +1,119 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 E
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 T
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 F
|
| 28 |
+
H28 N
|
| 29 |
+
H29 I
|
| 30 |
+
H30 K
|
| 31 |
+
H31 D
|
| 32 |
+
H32 T
|
| 33 |
+
H33 Y
|
| 34 |
+
H34 V
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 R
|
| 41 |
+
H41 P
|
| 42 |
+
H42 E
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 R
|
| 51 |
+
H51 I
|
| 52 |
+
H52 D
|
| 53 |
+
H52A P
|
| 54 |
+
H53 A
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 Y
|
| 58 |
+
H57 T
|
| 59 |
+
H58 K
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 D
|
| 62 |
+
H61 P
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 G
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 T
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 V
|
| 98 |
+
H94 R
|
| 99 |
+
H95 P
|
| 100 |
+
H96 L
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 D
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A A
|
| 106 |
+
H100B M
|
| 107 |
+
H101 D
|
| 108 |
+
H102 Y
|
| 109 |
+
H103 W
|
| 110 |
+
H104 G
|
| 111 |
+
H105 Q
|
| 112 |
+
H106 G
|
| 113 |
+
H107 T
|
| 114 |
+
H108 S
|
| 115 |
+
H109 V
|
| 116 |
+
H110 T
|
| 117 |
+
H111 V
|
| 118 |
+
H112 S
|
| 119 |
+
H113 S
|
sabdab_dataset/2vdo/annotation/2vdo_L_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 L
|
| 4 |
+
L4 M
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L10 S
|
| 11 |
+
L11 M
|
| 12 |
+
L12 S
|
| 13 |
+
L13 V
|
| 14 |
+
L14 S
|
| 15 |
+
L15 L
|
| 16 |
+
L16 G
|
| 17 |
+
L17 D
|
| 18 |
+
L18 T
|
| 19 |
+
L19 V
|
| 20 |
+
L20 S
|
| 21 |
+
L21 I
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 H
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 Q
|
| 28 |
+
L28 G
|
| 29 |
+
L29 I
|
| 30 |
+
L30 S
|
| 31 |
+
L31 S
|
| 32 |
+
L32 N
|
| 33 |
+
L33 I
|
| 34 |
+
L34 G
|
| 35 |
+
L35 W
|
| 36 |
+
L36 L
|
| 37 |
+
L37 Q
|
| 38 |
+
L38 Q
|
| 39 |
+
L39 K
|
| 40 |
+
L40 P
|
| 41 |
+
L41 G
|
| 42 |
+
L42 K
|
| 43 |
+
L43 S
|
| 44 |
+
L44 F
|
| 45 |
+
L45 M
|
| 46 |
+
L46 G
|
| 47 |
+
L47 L
|
| 48 |
+
L48 I
|
| 49 |
+
L49 Y
|
| 50 |
+
L50 Y
|
| 51 |
+
L51 G
|
| 52 |
+
L52 T
|
| 53 |
+
L53 N
|
| 54 |
+
L54 L
|
| 55 |
+
L55 V
|
| 56 |
+
L56 D
|
| 57 |
+
L57 G
|
| 58 |
+
L58 V
|
| 59 |
+
L59 P
|
| 60 |
+
L60 S
|
| 61 |
+
L61 R
|
| 62 |
+
L62 F
|
| 63 |
+
L63 S
|
| 64 |
+
L64 G
|
| 65 |
+
L65 S
|
| 66 |
+
L66 G
|
| 67 |
+
L67 S
|
| 68 |
+
L68 G
|
| 69 |
+
L69 A
|
| 70 |
+
L70 D
|
| 71 |
+
L71 Y
|
| 72 |
+
L72 S
|
| 73 |
+
L73 L
|
| 74 |
+
L74 T
|
| 75 |
+
L75 I
|
| 76 |
+
L76 S
|
| 77 |
+
L77 S
|
| 78 |
+
L78 L
|
| 79 |
+
L79 D
|
| 80 |
+
L80 S
|
| 81 |
+
L81 E
|
| 82 |
+
L82 D
|
| 83 |
+
L83 F
|
| 84 |
+
L84 A
|
| 85 |
+
L85 D
|
| 86 |
+
L86 Y
|
| 87 |
+
L87 Y
|
| 88 |
+
L88 C
|
| 89 |
+
L89 V
|
| 90 |
+
L90 Q
|
| 91 |
+
L91 Y
|
| 92 |
+
L92 A
|
| 93 |
+
L93 Q
|
| 94 |
+
L94 L
|
| 95 |
+
L95 P
|
| 96 |
+
L96 Y
|
| 97 |
+
L97 T
|
| 98 |
+
L98 F
|
| 99 |
+
L99 G
|
| 100 |
+
L100 G
|
| 101 |
+
L101 G
|
| 102 |
+
L102 T
|
| 103 |
+
L103 K
|
| 104 |
+
L104 L
|
| 105 |
+
L105 E
|
| 106 |
+
L106 I
|
| 107 |
+
L107 K
|
| 108 |
+
L108 R
|
| 109 |
+
L109 A
|
sabdab_dataset/2vdo/imgt/2vdo_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGHG2A*01 IG IGHC IGHG2A IGHG2A IGg True
|
| 3 |
+
J Mus_musculus IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 4 |
+
V Mus_musculus IGHV14-3*02 IG IGHV IGHV14 IGHV14-3 NA True
|
sabdab_dataset/2vdo/imgt/2vdo_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ2*01 IG IGKJ IGKJ2 IGKJ2 NA True
|
| 4 |
+
V Mus_musculus IGKV14-100*01 IG IGKV IGKV14 IGKV14-100 NA True
|
sabdab_dataset/2vdo/sequence/2vdo_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2vdo_H|seqres|full
|
| 2 |
+
EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYVHWVKQRPEQGLEWIGRIDPANGYTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCVRPLYDYYAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGP
|
| 3 |
+
>2vdo_H|seqres|region: H
|
| 4 |
+
EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYVHWVKQRPEQGLEWIGRIDPANGYTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCVRPLYDYYAMDYWGQGTSVTVSS------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2vdo_H|structure|full
|
| 6 |
+
EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYVHWVKQRPEQGLEWIGRIDPANGYTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCVRPLYDYYAMDYWGQGTSVTVSSAKTTAPSVYPLAPVC--TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGP
|
sabdab_dataset/2vdo/sequence/2vdo_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2vdo_L|seqres|full
|
| 2 |
+
DILMTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFMGLIYYGTNLVDGVPSRFSGSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
| 3 |
+
>2vdo_L|seqres|region: L
|
| 4 |
+
DILMTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFMGLIYYGTNLVDGVPSRFSGSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGTKLEIKRA---------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2vdo_L|structure|full
|
| 6 |
+
DILMTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFMGLIYYGTNLVDGVPSRFSGSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/2vdo/sequence/2vdo_raw.pdb
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2vdo_A|type: non-ab
|
| 2 |
+
LNLDPVQLTFYAGPNGSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAEGGQCPSLLFDLRDETRNVGSQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDFSWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP
|
| 3 |
+
>2vdo_H|type: H
|
| 4 |
+
EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYVHWVKQRPEQGLEWIGRIDPANGYTKYDPKFQGKATITADTSSNTAYLQLSSLTSEDTAVYYCVRPLYDYYAMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGP
|
| 5 |
+
>2vdo_C|type: non-ab
|
| 6 |
+
HHLGGAKQAGDV
|
| 7 |
+
>2vdo_B|type: non-ab
|
| 8 |
+
GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCAPESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCR
|
| 9 |
+
>2vdo_L|type: L
|
| 10 |
+
DILMTQSPSSMSVSLGDTVSITCHASQGISSNIGWLQQKPGKSFMGLIYYGTNLVDGVPSRFSGSGSGADYSLTISSLDSEDFADYYCVQYAQLPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
|
sabdab_dataset/2vdo/structure/2vdo.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2vdo/structure/chothia/2vdo.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2x1q/annotation/2x1q_A_VH.ann
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 R
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 N
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 R
|
| 34 |
+
H34 M
|
| 35 |
+
H35 G
|
| 36 |
+
H36 W
|
| 37 |
+
H37 F
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 E
|
| 45 |
+
H45 R
|
| 46 |
+
H46 E
|
| 47 |
+
H47 F
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 T
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H52A Q
|
| 54 |
+
H53 S
|
| 55 |
+
H54 G
|
| 56 |
+
H55 A
|
| 57 |
+
H56 A
|
| 58 |
+
H57 T
|
| 59 |
+
H58 A
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 R
|
| 73 |
+
H72 D
|
| 74 |
+
H73 N
|
| 75 |
+
H74 A
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 L
|
| 79 |
+
H78 L
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 E
|
| 83 |
+
H82 M
|
| 84 |
+
H82A L
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 E
|
| 88 |
+
H84 P
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 A
|
| 99 |
+
H95 S
|
| 100 |
+
H96 S
|
| 101 |
+
H97 R
|
| 102 |
+
H98 V
|
| 103 |
+
H99 F
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A T
|
| 106 |
+
H100B E
|
| 107 |
+
H100C V
|
| 108 |
+
H100D L
|
| 109 |
+
H100E Q
|
| 110 |
+
H100F T
|
| 111 |
+
H100G T
|
| 112 |
+
H100H T
|
| 113 |
+
H100I G
|
| 114 |
+
H100J Y
|
| 115 |
+
H101 D
|
| 116 |
+
H102 Y
|
| 117 |
+
H103 W
|
| 118 |
+
H104 G
|
| 119 |
+
H105 Q
|
| 120 |
+
H106 G
|
| 121 |
+
H107 T
|
| 122 |
+
H108 Q
|
| 123 |
+
H109 V
|
| 124 |
+
H110 T
|
| 125 |
+
H111 V
|
| 126 |
+
H112 S
|
| 127 |
+
H113 S
|
sabdab_dataset/2x1q/annotation/2x1q_B_VH.ann
ADDED
|
@@ -0,0 +1,127 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 R
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 S
|
| 31 |
+
H31 N
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 R
|
| 34 |
+
H34 M
|
| 35 |
+
H35 G
|
| 36 |
+
H36 W
|
| 37 |
+
H37 F
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 E
|
| 45 |
+
H45 R
|
| 46 |
+
H46 E
|
| 47 |
+
H47 F
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 T
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H52A Q
|
| 54 |
+
H53 S
|
| 55 |
+
H54 G
|
| 56 |
+
H55 A
|
| 57 |
+
H56 A
|
| 58 |
+
H57 T
|
| 59 |
+
H58 A
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 S
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 F
|
| 71 |
+
H70 S
|
| 72 |
+
H71 R
|
| 73 |
+
H72 D
|
| 74 |
+
H73 N
|
| 75 |
+
H74 A
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 L
|
| 79 |
+
H78 L
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 E
|
| 83 |
+
H82 M
|
| 84 |
+
H82A L
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 E
|
| 88 |
+
H84 P
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 A
|
| 99 |
+
H95 S
|
| 100 |
+
H96 S
|
| 101 |
+
H97 R
|
| 102 |
+
H98 V
|
| 103 |
+
H99 F
|
| 104 |
+
H100 Y
|
| 105 |
+
H100A T
|
| 106 |
+
H100B E
|
| 107 |
+
H100C V
|
| 108 |
+
H100D L
|
| 109 |
+
H100E Q
|
| 110 |
+
H100F T
|
| 111 |
+
H100G T
|
| 112 |
+
H100H T
|
| 113 |
+
H100I G
|
| 114 |
+
H100J Y
|
| 115 |
+
H101 D
|
| 116 |
+
H102 Y
|
| 117 |
+
H103 W
|
| 118 |
+
H104 G
|
| 119 |
+
H105 Q
|
| 120 |
+
H106 G
|
| 121 |
+
H107 T
|
| 122 |
+
H108 Q
|
| 123 |
+
H109 V
|
| 124 |
+
H110 T
|
| 125 |
+
H111 V
|
| 126 |
+
H112 S
|
| 127 |
+
H113 S
|
sabdab_dataset/2x1q/imgt/2x1q_A_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Lama_glama IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 3 |
+
V Lama_glama IGHV1S2*01 IG IGHV IGHV1 IGHV1S2 NA True
|
sabdab_dataset/2x1q/imgt/2x1q_B_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Lama_glama IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
|
| 3 |
+
V Lama_glama IGHV1S2*01 IG IGHV IGHV1 IGHV1S2 NA True
|
sabdab_dataset/2x1q/sequence/2x1q_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2x1q_A|seqres|full
|
| 2 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
| 3 |
+
>2x1q_A|seqres|region: H
|
| 4 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
| 5 |
+
>2x1q_A|structure|full
|
| 6 |
+
--QLQESGGGLVQPGGSLRLSCA------SNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
sabdab_dataset/2x1q/sequence/2x1q_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2x1q_B|seqres|full
|
| 2 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
| 3 |
+
>2x1q_B|seqres|region: H
|
| 4 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
| 5 |
+
>2x1q_B|structure|full
|
| 6 |
+
--QLQESGGGLVQPGGSLRLSCAA----FSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
sabdab_dataset/2x1q/sequence/2x1q_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2x1q_A|type: H
|
| 2 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
| 3 |
+
>2x1q_B|type: H
|
| 4 |
+
QVQLQESGGGLVQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSRVFYTEVLQTTTGYDYWGQGTQVTVSS
|
sabdab_dataset/2x1q/structure/2x1q.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2x1q/structure/chothia/2x1q.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/3jbe/annotation/3jbe_7_VH.ann
ADDED
|
@@ -0,0 +1,126 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 S
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 A
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 Q
|
| 29 |
+
H29 Y
|
| 30 |
+
H30 S
|
| 31 |
+
H31 L
|
| 32 |
+
H32 L
|
| 33 |
+
H33 C
|
| 34 |
+
H34 M
|
| 35 |
+
H35 A
|
| 36 |
+
H36 W
|
| 37 |
+
H37 F
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 V
|
| 41 |
+
H41 L
|
| 42 |
+
H42 G
|
| 43 |
+
H43 E
|
| 44 |
+
H44 G
|
| 45 |
+
H45 R
|
| 46 |
+
H46 E
|
| 47 |
+
H47 G
|
| 48 |
+
H48 V
|
| 49 |
+
H49 A
|
| 50 |
+
H50 F
|
| 51 |
+
H51 I
|
| 52 |
+
H52 T
|
| 53 |
+
H52A T
|
| 54 |
+
H53 Y
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 A
|
| 58 |
+
H57 M
|
| 59 |
+
H58 R
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 D
|
| 63 |
+
H62 T
|
| 64 |
+
H63 V
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 F
|
| 69 |
+
H68 T
|
| 70 |
+
H69 V
|
| 71 |
+
H70 S
|
| 72 |
+
H71 Q
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 D
|
| 76 |
+
H75 K
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 V
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 M
|
| 84 |
+
H82A N
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 P
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 I
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 A
|
| 99 |
+
H95 G
|
| 100 |
+
H96 R
|
| 101 |
+
H97 W
|
| 102 |
+
H98 R
|
| 103 |
+
H99 F
|
| 104 |
+
H100 G
|
| 105 |
+
H100A D
|
| 106 |
+
H100B I
|
| 107 |
+
H100C C
|
| 108 |
+
H100D H
|
| 109 |
+
H100E E
|
| 110 |
+
H100F G
|
| 111 |
+
H100G S
|
| 112 |
+
H100H G
|
| 113 |
+
H100I Y
|
| 114 |
+
H101 N
|
| 115 |
+
H102 Y
|
| 116 |
+
H103 W
|
| 117 |
+
H104 G
|
| 118 |
+
H105 Q
|
| 119 |
+
H106 G
|
| 120 |
+
H107 T
|
| 121 |
+
H108 Q
|
| 122 |
+
H109 V
|
| 123 |
+
H110 T
|
| 124 |
+
H111 V
|
| 125 |
+
H112 S
|
| 126 |
+
H113 S
|
sabdab_dataset/3jbe/imgt/3jbe_7_H.ann
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
J Lamgla IGHJ4*01 IG IGHJ ? IGHJ4 NA False
|
| 3 |
+
V Lamgla IGHV1S3*01 IG IGHV IGHV1 IGHV1S3 NA False
|
sabdab_dataset/3jbe/sequence/3jbe_7_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>3jbe_7|seqres|full
|
| 2 |
+
QVQLQESGGGSVQAGGSLRLSCAASGYQYSLLCMAWFRQVLGEGREGVAFITTYNGAMRYADTVKGRFTVSQDKDKNTVYLQMNSLKPEDTAIYYCAAGRWRFGDICHEGSGYNYWGQGTQVTVSSHHHHHH
|
| 3 |
+
>3jbe_7|seqres|region: H
|
| 4 |
+
QVQLQESGGGSVQAGGSLRLSCAASGYQYSLLCMAWFRQVLGEGREGVAFITTYNGAMRYADTVKGRFTVSQDKDKNTVYLQMNSLKPEDTAIYYCAAGRWRFGDICHEGSGYNYWGQGTQVTVSS------
|
| 5 |
+
>3jbe_7|structure|full
|
| 6 |
+
QVQLQESGGGSVQAGGSLRLSCAASGYQYSLLCMAWFRQVLGEGREGVAFITTYNGAMRYADTVKGRFTVSQDKDKNTVYLQMNSLKPEDTAIYYCAAGRWRFGDICHEGSGYNYWGQGTQVTVSSH-----
|
sabdab_dataset/3jbe/sequence/3jbe_raw.pdb
ADDED
|
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>3jbe_1|type: non-ab
|
| 2 |
+
GLGQMLESMIDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAVETGATNPLVPSDTVQTRHVVQHRSRSESSIESFFARGACVTIMTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDDYTWQTSSNPSIFYTYGTAPARISVPYVGISNAYSHFYDGFSKVPLKDQSAALGDSLYGAASLNDFGILAVRVVNDHNPTKVTSKIRVYLKPKHIRVWCPRPPRAVAYYGPGVDYKDGTLTPLSTKDLTTY
|
| 3 |
+
>3jbe_3|type: non-ab
|
| 4 |
+
GLPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEIDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTIDDSFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQKALA
|
| 5 |
+
>3jbe_2|type: non-ab
|
| 6 |
+
SPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRDSEANPVDQPTEPDVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSNTTTMHTSYQNANPGEKGGTFTGTFTPDNNQTSPARRFCPVDYLLGNGTLLGNAFVFPHQIINLRTNNCATLVLPYVNSLSIDSMVKHNNWGIAILPLAPLNFASESSPEIPITLTIAPMCCEFNGLRNITLPRLQ
|
| 7 |
+
>3jbe_4|type: non-ab
|
| 8 |
+
XGAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
|
| 9 |
+
>3jbe_7|type: H
|
| 10 |
+
QVQLQESGGGSVQAGGSLRLSCAASGYQYSLLCMAWFRQVLGEGREGVAFITTYNGAMRYADTVKGRFTVSQDKDKNTVYLQMNSLKPEDTAIYYCAAGRWRFGDICHEGSGYNYWGQGTQVTVSSHHHHHH
|
sabdab_dataset/3jbe/structure/3jbe.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|