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  1. sabdab_dataset/1ken/abangle/1ken.abangle +3 -0
  2. sabdab_dataset/1ken/annotation/1ken_H_VH.ann +120 -0
  3. sabdab_dataset/1ken/annotation/1ken_L_VL.ann +110 -0
  4. sabdab_dataset/1ken/annotation/1ken_T_VH.ann +120 -0
  5. sabdab_dataset/1ken/annotation/1ken_U_VL.ann +110 -0
  6. sabdab_dataset/1ken/imgt/1ken_H_H.ann +4 -0
  7. sabdab_dataset/1ken/imgt/1ken_L_L.ann +4 -0
  8. sabdab_dataset/1ken/imgt/1ken_T_H.ann +4 -0
  9. sabdab_dataset/1ken/imgt/1ken_U_L.ann +4 -0
  10. sabdab_dataset/1ken/sequence/1ken_H_VH.fa +6 -0
  11. sabdab_dataset/1ken/sequence/1ken_L_VL.fa +6 -0
  12. sabdab_dataset/1ken/sequence/1ken_T_VH.fa +6 -0
  13. sabdab_dataset/1ken/sequence/1ken_U_VL.fa +6 -0
  14. sabdab_dataset/1ken/sequence/1ken_raw.pdb +20 -0
  15. sabdab_dataset/1ken/structure/1ken.pdb +0 -0
  16. sabdab_dataset/1ken/structure/chothia/1ken.pdb +0 -0
  17. sabdab_dataset/1vfb/abangle/1vfb.abangle +2 -0
  18. sabdab_dataset/1vfb/annotation/1vfb_A_VL.ann +107 -0
  19. sabdab_dataset/1vfb/annotation/1vfb_B_VH.ann +116 -0
  20. sabdab_dataset/1vfb/imgt/1vfb_A_L.ann +3 -0
  21. sabdab_dataset/1vfb/imgt/1vfb_B_H.ann +3 -0
  22. sabdab_dataset/1vfb/sequence/1vfb_A_VL.fa +6 -0
  23. sabdab_dataset/1vfb/sequence/1vfb_B_VH.fa +6 -0
  24. sabdab_dataset/1vfb/sequence/1vfb_raw.pdb +6 -0
  25. sabdab_dataset/1vfb/structure/1vfb.pdb +0 -0
  26. sabdab_dataset/1vfb/structure/chothia/1vfb.pdb +0 -0
  27. sabdab_dataset/2vq1/abangle/2vq1.abangle +3 -0
  28. sabdab_dataset/2vq1/annotation/2vq1_A_VL.ann +114 -0
  29. sabdab_dataset/2vq1/annotation/2vq1_B_VH.ann +118 -0
  30. sabdab_dataset/2vq1/annotation/2vq1_E_VL.ann +114 -0
  31. sabdab_dataset/2vq1/annotation/2vq1_F_VH.ann +118 -0
  32. sabdab_dataset/2vq1/imgt/2vq1_A_L.ann +4 -0
  33. sabdab_dataset/2vq1/imgt/2vq1_B_H.ann +4 -0
  34. sabdab_dataset/2vq1/imgt/2vq1_E_L.ann +4 -0
  35. sabdab_dataset/2vq1/imgt/2vq1_F_H.ann +4 -0
  36. sabdab_dataset/2vq1/sequence/2vq1_A_VL.fa +6 -0
  37. sabdab_dataset/2vq1/sequence/2vq1_B_VH.fa +6 -0
  38. sabdab_dataset/2vq1/sequence/2vq1_E_VL.fa +6 -0
  39. sabdab_dataset/2vq1/sequence/2vq1_F_VH.fa +6 -0
  40. sabdab_dataset/2vq1/sequence/2vq1_raw.pdb +8 -0
  41. sabdab_dataset/2vq1/structure/2vq1.pdb +0 -0
  42. sabdab_dataset/2vq1/structure/chothia/2vq1.pdb +0 -0
  43. sabdab_dataset/2x1p/annotation/2x1p_B_VH.ann +127 -0
  44. sabdab_dataset/2x1p/imgt/2x1p_B_H.ann +3 -0
  45. sabdab_dataset/2x1p/sequence/2x1p_A_VH.fa +6 -0
  46. sabdab_dataset/2x1p/sequence/2x1p_B_VH.fa +6 -0
  47. sabdab_dataset/2x1p/sequence/2x1p_C_VH.fa +6 -0
  48. sabdab_dataset/2x1p/sequence/2x1p_D_VH.fa +6 -0
  49. sabdab_dataset/2x1p/sequence/2x1p_raw.pdb +8 -0
  50. sabdab_dataset/2x1p/structure/2x1p.pdb +0 -0
sabdab_dataset/1ken/abangle/1ken.abangle ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 1ken T U 0 -57.49 74.76 120.52 118.07 80.98 16.63
3
+ 1ken H L 0 -57.94 74.13 119.93 118.35 80.60 16.68
sabdab_dataset/1ken/annotation/1ken_H_VH.ann ADDED
@@ -0,0 +1,120 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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sabdab_dataset/1ken/annotation/1ken_L_VL.ann ADDED
@@ -0,0 +1,110 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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sabdab_dataset/1ken/annotation/1ken_T_VH.ann ADDED
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sabdab_dataset/1ken/annotation/1ken_U_VL.ann ADDED
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sabdab_dataset/1ken/imgt/1ken_H_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
3
+ J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
4
+ V Mus_musculus IGHV3-6*02 IG IGHV IGHV3 IGHV3-6 NA True
sabdab_dataset/1ken/imgt/1ken_L_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
4
+ V Mus_musculus IGKV4-79*01 IG IGKV IGKV4 IGKV4-79 NA True
sabdab_dataset/1ken/imgt/1ken_T_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
3
+ J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
4
+ V Mus_musculus IGHV3-6*02 IG IGHV IGHV3 IGHV3-6 NA True
sabdab_dataset/1ken/imgt/1ken_U_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
4
+ V Mus_musculus IGKV4-79*01 IG IGKV IGKV4 IGKV4-79 NA True
sabdab_dataset/1ken/sequence/1ken_H_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1ken_H|seqres|full
2
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
3
+ >1ken_H|seqres|region: H
4
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSS-----------------------------------------------------------------------------------------------------
5
+ >1ken_H|structure|full
6
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
sabdab_dataset/1ken/sequence/1ken_L_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1ken_L|seqres|full
2
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >1ken_L|seqres|region: L
4
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRA-------------------------------------------------------------------------------------------------------
5
+ >1ken_L|structure|full
6
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
sabdab_dataset/1ken/sequence/1ken_T_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1ken_T|seqres|full
2
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
3
+ >1ken_T|seqres|region: H
4
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSS-----------------------------------------------------------------------------------------------------
5
+ >1ken_T|structure|full
6
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP--
sabdab_dataset/1ken/sequence/1ken_U_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1ken_U|seqres|full
2
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >1ken_U|seqres|region: L
4
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRA-------------------------------------------------------------------------------------------------------
5
+ >1ken_U|structure|full
6
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
sabdab_dataset/1ken/sequence/1ken_raw.pdb ADDED
@@ -0,0 +1,20 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ >1ken_A|type: non-ab
2
+ QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
3
+ >1ken_C|type: non-ab
4
+ QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
5
+ >1ken_B|type: non-ab
6
+ GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
7
+ >1ken_E|type: non-ab
8
+ QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT
9
+ >1ken_D|type: non-ab
10
+ GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
11
+ >1ken_F|type: non-ab
12
+ GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG
13
+ >1ken_H|type: H
14
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
15
+ >1ken_L|type: L
16
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
17
+ >1ken_U|type: L
18
+ QIVLTQSPAIMSASPGEKVTLTCSASSTITSSFLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSLEAEDGASYFCHQWETFPRTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
19
+ >1ken_T|type: H
20
+ DVHLQESGPGLVKPSQSLSLTCYVTGYSITSGYYWTWIRQFPGNKLEWMGYISYDGSNNYNPSLKNRISITRDTSKNQFFLKLNSVTAEDTASYYCAAFYYDYDFFFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
sabdab_dataset/1ken/structure/1ken.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/1ken/structure/chothia/1ken.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/1vfb/abangle/1vfb.abangle ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 1vfb B A 0 -58.50 70.09 120.53 120.30 80.24 16.13
sabdab_dataset/1vfb/annotation/1vfb_A_VL.ann ADDED
@@ -0,0 +1,107 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ L1 D
2
+ L2 I
3
+ L3 V
4
+ L4 L
5
+ L5 T
6
+ L6 Q
7
+ L7 S
8
+ L8 P
9
+ L9 A
10
+ L10 S
11
+ L11 L
12
+ L12 S
13
+ L13 A
14
+ L14 S
15
+ L15 V
16
+ L16 G
17
+ L17 E
18
+ L18 T
19
+ L19 V
20
+ L20 T
21
+ L21 I
22
+ L22 T
23
+ L23 C
24
+ L24 R
25
+ L25 A
26
+ L26 S
27
+ L27 G
28
+ L28 N
29
+ L29 I
30
+ L30 H
31
+ L31 N
32
+ L32 Y
33
+ L33 L
34
+ L34 A
35
+ L35 W
36
+ L36 Y
37
+ L37 Q
38
+ L38 Q
39
+ L39 K
40
+ L40 Q
41
+ L41 G
42
+ L42 K
43
+ L43 S
44
+ L44 P
45
+ L45 Q
46
+ L46 L
47
+ L47 L
48
+ L48 V
49
+ L49 Y
50
+ L50 Y
51
+ L51 T
52
+ L52 T
53
+ L53 T
54
+ L54 L
55
+ L55 A
56
+ L56 D
57
+ L57 G
58
+ L58 V
59
+ L59 P
60
+ L60 S
61
+ L61 R
62
+ L62 F
63
+ L63 S
64
+ L64 G
65
+ L65 S
66
+ L66 G
67
+ L67 S
68
+ L68 G
69
+ L69 T
70
+ L70 Q
71
+ L71 Y
72
+ L72 S
73
+ L73 L
74
+ L74 K
75
+ L75 I
76
+ L76 N
77
+ L77 S
78
+ L78 L
79
+ L79 Q
80
+ L80 P
81
+ L81 E
82
+ L82 D
83
+ L83 F
84
+ L84 G
85
+ L85 S
86
+ L86 Y
87
+ L87 Y
88
+ L88 C
89
+ L89 Q
90
+ L90 H
91
+ L91 F
92
+ L92 W
93
+ L93 S
94
+ L94 T
95
+ L95 P
96
+ L96 R
97
+ L97 T
98
+ L98 F
99
+ L99 G
100
+ L100 G
101
+ L101 G
102
+ L102 T
103
+ L103 K
104
+ L104 L
105
+ L105 E
106
+ L106 I
107
+ L107 K
sabdab_dataset/1vfb/annotation/1vfb_B_VH.ann ADDED
@@ -0,0 +1,116 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 Q
2
+ H2 V
3
+ H3 Q
4
+ H4 L
5
+ H5 Q
6
+ H6 E
7
+ H7 S
8
+ H8 G
9
+ H9 P
10
+ H10 G
11
+ H11 L
12
+ H12 V
13
+ H13 A
14
+ H14 P
15
+ H15 S
16
+ H16 Q
17
+ H17 S
18
+ H18 L
19
+ H19 S
20
+ H20 I
21
+ H21 T
22
+ H22 C
23
+ H23 T
24
+ H24 V
25
+ H25 S
26
+ H26 G
27
+ H27 F
28
+ H28 S
29
+ H29 L
30
+ H30 T
31
+ H31 G
32
+ H32 Y
33
+ H33 G
34
+ H34 V
35
+ H35 N
36
+ H36 W
37
+ H37 V
38
+ H38 R
39
+ H39 Q
40
+ H40 P
41
+ H41 P
42
+ H42 G
43
+ H43 K
44
+ H44 G
45
+ H45 L
46
+ H46 E
47
+ H47 W
48
+ H48 L
49
+ H49 G
50
+ H50 M
51
+ H51 I
52
+ H52 W
53
+ H53 G
54
+ H54 D
55
+ H55 G
56
+ H56 N
57
+ H57 T
58
+ H58 D
59
+ H59 Y
60
+ H60 N
61
+ H61 S
62
+ H62 A
63
+ H63 L
64
+ H64 K
65
+ H65 S
66
+ H66 R
67
+ H67 L
68
+ H68 S
69
+ H69 I
70
+ H70 S
71
+ H71 K
72
+ H72 D
73
+ H73 N
74
+ H74 S
75
+ H75 K
76
+ H76 S
77
+ H77 Q
78
+ H78 V
79
+ H79 F
80
+ H80 L
81
+ H81 K
82
+ H82 M
83
+ H82A N
84
+ H82B S
85
+ H82C L
86
+ H83 H
87
+ H84 T
88
+ H85 D
89
+ H86 D
90
+ H87 T
91
+ H88 A
92
+ H89 R
93
+ H90 Y
94
+ H91 Y
95
+ H92 C
96
+ H93 A
97
+ H94 R
98
+ H95 E
99
+ H96 R
100
+ H97 D
101
+ H98 Y
102
+ H99 R
103
+ H100 L
104
+ H101 D
105
+ H102 Y
106
+ H103 W
107
+ H104 G
108
+ H105 Q
109
+ H106 G
110
+ H107 T
111
+ H108 T
112
+ H109 L
113
+ H110 T
114
+ H111 V
115
+ H112 S
116
+ H113 S
sabdab_dataset/1vfb/imgt/1vfb_A_L.ann ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
3
+ V Mus_musculus IGKV12-41*02 IG IGKV IGKV12 IGKV12-41 NA True
sabdab_dataset/1vfb/imgt/1vfb_B_H.ann ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ J Mus_musculus IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
3
+ V Mus_musculus IGHV2-6-7*01 IG IGHV IGHV2 IGHV2-6-7 NA True
sabdab_dataset/1vfb/sequence/1vfb_A_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1vfb_A|seqres|full
2
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
3
+ >1vfb_A|seqres|region: L
4
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
5
+ >1vfb_A|structure|full
6
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
sabdab_dataset/1vfb/sequence/1vfb_B_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1vfb_B|seqres|full
2
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
3
+ >1vfb_B|seqres|region: H
4
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
5
+ >1vfb_B|structure|full
6
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
sabdab_dataset/1vfb/sequence/1vfb_raw.pdb ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >1vfb_A|type: L
2
+ DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWSTPRTFGGGTKLEIK
3
+ >1vfb_C|type: non-ab
4
+ KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
5
+ >1vfb_B|type: H
6
+ QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS
sabdab_dataset/1vfb/structure/1vfb.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/1vfb/structure/chothia/1vfb.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2vq1/abangle/2vq1.abangle ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
2
+ 2vq1 F E 0 -60.54 69.58 115.76 118.74 82.21 16.23
3
+ 2vq1 B A 0 -58.27 69.49 116.37 119.25 83.17 16.28
sabdab_dataset/2vq1/annotation/2vq1_A_VL.ann ADDED
@@ -0,0 +1,114 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ L1 D
2
+ L2 V
3
+ L3 V
4
+ L4 M
5
+ L5 T
6
+ L6 Q
7
+ L7 T
8
+ L8 P
9
+ L9 L
10
+ L10 S
11
+ L11 L
12
+ L12 S
13
+ L13 V
14
+ L14 S
15
+ L15 L
16
+ L16 G
17
+ L17 D
18
+ L18 Q
19
+ L19 A
20
+ L20 S
21
+ L21 I
22
+ L22 S
23
+ L23 C
24
+ L24 R
25
+ L25 S
26
+ L26 S
27
+ L27 Q
28
+ L28 S
29
+ L29 L
30
+ L30 V
31
+ L30A H
32
+ L30B S
33
+ L30C N
34
+ L30D G
35
+ L30E N
36
+ L31 T
37
+ L32 F
38
+ L33 L
39
+ L34 Q
40
+ L35 W
41
+ L36 Y
42
+ L37 L
43
+ L38 Q
44
+ L39 K
45
+ L40 P
46
+ L41 G
47
+ L42 Q
48
+ L43 S
49
+ L44 P
50
+ L45 K
51
+ L46 L
52
+ L47 L
53
+ L48 I
54
+ L49 Y
55
+ L50 K
56
+ L51 V
57
+ L52 S
58
+ L53 N
59
+ L54 R
60
+ L55 F
61
+ L56 S
62
+ L57 G
63
+ L58 V
64
+ L59 P
65
+ L60 D
66
+ L61 R
67
+ L62 F
68
+ L63 S
69
+ L64 G
70
+ L65 S
71
+ L66 G
72
+ L67 S
73
+ L68 G
74
+ L69 T
75
+ L70 D
76
+ L71 F
77
+ L72 T
78
+ L73 L
79
+ L74 K
80
+ L75 I
81
+ L76 S
82
+ L77 R
83
+ L78 M
84
+ L79 E
85
+ L80 A
86
+ L81 E
87
+ L82 D
88
+ L83 L
89
+ L84 G
90
+ L85 I
91
+ L86 Y
92
+ L87 F
93
+ L88 C
94
+ L89 S
95
+ L90 Q
96
+ L91 T
97
+ L92 T
98
+ L93 H
99
+ L94 V
100
+ L95 P
101
+ L96 W
102
+ L97 T
103
+ L98 F
104
+ L99 G
105
+ L100 G
106
+ L101 G
107
+ L102 T
108
+ L103 K
109
+ L104 L
110
+ L105 E
111
+ L106 I
112
+ L107 K
113
+ L108 R
114
+ L109 A
sabdab_dataset/2vq1/annotation/2vq1_B_VH.ann ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 Q
2
+ H2 I
3
+ H3 T
4
+ H4 L
5
+ H5 E
6
+ H6 E
7
+ H7 S
8
+ H8 G
9
+ H9 P
10
+ H10 G
11
+ H11 I
12
+ H12 L
13
+ H13 Q
14
+ H14 P
15
+ H15 S
16
+ H16 Q
17
+ H17 T
18
+ H18 L
19
+ H19 S
20
+ H20 L
21
+ H21 T
22
+ H22 C
23
+ H23 S
24
+ H24 F
25
+ H25 S
26
+ H26 G
27
+ H27 F
28
+ H28 S
29
+ H29 L
30
+ H30 S
31
+ H31 S
32
+ H31A S
33
+ H31B A
34
+ H32 M
35
+ H33 S
36
+ H34 V
37
+ H35 G
38
+ H36 W
39
+ H37 I
40
+ H38 R
41
+ H39 Q
42
+ H40 P
43
+ H41 S
44
+ H42 G
45
+ H43 K
46
+ H44 G
47
+ H45 L
48
+ H46 E
49
+ H47 W
50
+ H48 L
51
+ H49 A
52
+ H50 H
53
+ H51 I
54
+ H52 W
55
+ H53 W
56
+ H54 N
57
+ H55 D
58
+ H56 D
59
+ H57 K
60
+ H58 Y
61
+ H59 Y
62
+ H60 N
63
+ H61 P
64
+ H62 A
65
+ H63 L
66
+ H64 K
67
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68
+ H66 R
69
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70
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71
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72
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73
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74
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75
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76
+ H74 S
77
+ H75 D
78
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79
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80
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81
+ H79 F
82
+ H80 L
83
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84
+ H82 I
85
+ H82A A
86
+ H82B S
87
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88
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89
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90
+ H85 A
91
+ H86 D
92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
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104
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105
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106
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107
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108
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109
+ H104 G
110
+ H105 Q
111
+ H106 G
112
+ H107 T
113
+ H108 T
114
+ H109 L
115
+ H110 T
116
+ H111 V
117
+ H112 S
118
+ H113 S
sabdab_dataset/2vq1/annotation/2vq1_E_VL.ann ADDED
@@ -0,0 +1,114 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ L1 D
2
+ L2 V
3
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4
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5
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6
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7
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8
+ L8 P
9
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10
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11
+ L11 L
12
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13
+ L13 V
14
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15
+ L15 L
16
+ L16 G
17
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18
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19
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20
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21
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22
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23
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24
+ L24 R
25
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26
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27
+ L27 Q
28
+ L28 S
29
+ L29 L
30
+ L30 V
31
+ L30A H
32
+ L30B S
33
+ L30C N
34
+ L30D G
35
+ L30E N
36
+ L31 T
37
+ L32 F
38
+ L33 L
39
+ L34 Q
40
+ L35 W
41
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42
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43
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44
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45
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46
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47
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48
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49
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50
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51
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52
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53
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54
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55
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56
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57
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58
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59
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60
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61
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62
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63
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64
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65
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66
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67
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68
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69
+ L64 G
70
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71
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72
+ L67 S
73
+ L68 G
74
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75
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76
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77
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78
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79
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80
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81
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82
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83
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84
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85
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86
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87
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88
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89
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90
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91
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92
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93
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94
+ L89 S
95
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96
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97
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98
+ L93 H
99
+ L94 V
100
+ L95 P
101
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102
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103
+ L98 F
104
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105
+ L100 G
106
+ L101 G
107
+ L102 T
108
+ L103 K
109
+ L104 L
110
+ L105 E
111
+ L106 I
112
+ L107 K
113
+ L108 R
114
+ L109 A
sabdab_dataset/2vq1/annotation/2vq1_F_VH.ann ADDED
@@ -0,0 +1,118 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 Q
2
+ H2 I
3
+ H3 T
4
+ H4 L
5
+ H5 E
6
+ H6 E
7
+ H7 S
8
+ H8 G
9
+ H9 P
10
+ H10 G
11
+ H11 I
12
+ H12 L
13
+ H13 Q
14
+ H14 P
15
+ H15 S
16
+ H16 Q
17
+ H17 T
18
+ H18 L
19
+ H19 S
20
+ H20 L
21
+ H21 T
22
+ H22 C
23
+ H23 S
24
+ H24 F
25
+ H25 S
26
+ H26 G
27
+ H27 F
28
+ H28 S
29
+ H29 L
30
+ H30 S
31
+ H31 S
32
+ H31A S
33
+ H31B A
34
+ H32 M
35
+ H33 S
36
+ H34 V
37
+ H35 G
38
+ H36 W
39
+ H37 I
40
+ H38 R
41
+ H39 Q
42
+ H40 P
43
+ H41 S
44
+ H42 G
45
+ H43 K
46
+ H44 G
47
+ H45 L
48
+ H46 E
49
+ H47 W
50
+ H48 L
51
+ H49 A
52
+ H50 H
53
+ H51 I
54
+ H52 W
55
+ H53 W
56
+ H54 N
57
+ H55 D
58
+ H56 D
59
+ H57 K
60
+ H58 Y
61
+ H59 Y
62
+ H60 N
63
+ H61 P
64
+ H62 A
65
+ H63 L
66
+ H64 K
67
+ H65 S
68
+ H66 R
69
+ H67 L
70
+ H68 T
71
+ H69 V
72
+ H70 S
73
+ H71 K
74
+ H72 D
75
+ H73 S
76
+ H74 S
77
+ H75 D
78
+ H76 N
79
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80
+ H78 V
81
+ H79 F
82
+ H80 L
83
+ H81 K
84
+ H82 I
85
+ H82A A
86
+ H82B S
87
+ H82C V
88
+ H83 V
89
+ H84 T
90
+ H85 A
91
+ H86 D
92
+ H87 T
93
+ H88 A
94
+ H89 T
95
+ H90 Y
96
+ H91 Y
97
+ H92 C
98
+ H93 A
99
+ H94 R
100
+ H95 I
101
+ H96 P
102
+ H97 G
103
+ H98 F
104
+ H99 G
105
+ H100 F
106
+ H101 D
107
+ H102 Y
108
+ H103 W
109
+ H104 G
110
+ H105 Q
111
+ H106 G
112
+ H107 T
113
+ H108 T
114
+ H109 L
115
+ H110 T
116
+ H111 V
117
+ H112 S
118
+ H113 S
sabdab_dataset/2vq1/imgt/2vq1_A_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
4
+ V Mus_musculus IGKV1-110*01 IG IGKV IGKV1 IGKV1-110 NA True
sabdab_dataset/2vq1/imgt/2vq1_B_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG3*01 IG IGHC IGHG3 IGHG3 IGg True
3
+ J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
4
+ V Mus_musculus IGHV8-5*01 IG IGHV IGHV8 IGHV8-5 NA True
sabdab_dataset/2vq1/imgt/2vq1_E_L.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGKC*01 IG IGKC IGKC IGKC NA True
3
+ J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
4
+ V Mus_musculus IGKV1-110*01 IG IGKV IGKV1 IGKV1-110 NA True
sabdab_dataset/2vq1/imgt/2vq1_F_H.ann ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ C Mus_musculus IGHG3*01 IG IGHC IGHG3 IGHG3 IGg True
3
+ J Mus_musculus IGHJ2*01 IG IGHJ IGHJ2 IGHJ2 NA True
4
+ V Mus_musculus IGHV8-5*01 IG IGHV IGHV8 IGHV8-5 NA True
sabdab_dataset/2vq1/sequence/2vq1_A_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2vq1_A|seqres|full
2
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >2vq1_A|seqres|region: L
4
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRA-------------------------------------------------------------------------------------------------------
5
+ >2vq1_A|structure|full
6
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
sabdab_dataset/2vq1/sequence/2vq1_B_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2vq1_B|seqres|full
2
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
3
+ >2vq1_B|seqres|region: H
4
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSS----------------------------------------------------------------------------------------------------
5
+ >2vq1_B|structure|full
6
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVPGC-----SSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
sabdab_dataset/2vq1/sequence/2vq1_E_VL.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2vq1_E|seqres|full
2
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >2vq1_E|seqres|region: L
4
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRA-------------------------------------------------------------------------------------------------------
5
+ >2vq1_E|structure|full
6
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
sabdab_dataset/2vq1/sequence/2vq1_F_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2vq1_F|seqres|full
2
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
3
+ >2vq1_F|seqres|region: H
4
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSS----------------------------------------------------------------------------------------------------
5
+ >2vq1_F|structure|full
6
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVP-------SSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
sabdab_dataset/2vq1/sequence/2vq1_raw.pdb ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ >2vq1_A|type: L
2
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
3
+ >2vq1_B|type: H
4
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
5
+ >2vq1_E|type: L
6
+ DVVMTQTPLSLSVSLGDQASISCRSSQSLVHSNGNTFLQWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
7
+ >2vq1_F|type: H
8
+ QITLEESGPGILQPSQTLSLTCSFSGFSLSSSAMSVGWIRQPSGKGLEWLAHIWWNDDKYYNPALKSRLTVSKDSSDNQVFLKIASVVTADTATYYCARIPGFGFDYWGQGTTLTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTVICNVAHPASKTELIKRIEPR
sabdab_dataset/2vq1/structure/2vq1.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2vq1/structure/chothia/2vq1.pdb ADDED
The diff for this file is too large to render. See raw diff
 
sabdab_dataset/2x1p/annotation/2x1p_B_VH.ann ADDED
@@ -0,0 +1,127 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ H1 Q
2
+ H2 V
3
+ H3 Q
4
+ H4 L
5
+ H5 Q
6
+ H6 E
7
+ H7 S
8
+ H8 G
9
+ H9 G
10
+ H10 G
11
+ H11 L
12
+ H12 V
13
+ H13 Q
14
+ H14 A
15
+ H15 G
16
+ H16 G
17
+ H17 S
18
+ H18 L
19
+ H19 R
20
+ H20 L
21
+ H21 S
22
+ H22 C
23
+ H23 A
24
+ H24 A
25
+ H25 S
26
+ H26 G
27
+ H27 R
28
+ H28 T
29
+ H29 F
30
+ H30 T
31
+ H31 S
32
+ H32 F
33
+ H33 A
34
+ H34 M
35
+ H35 G
36
+ H36 W
37
+ H37 F
38
+ H38 R
39
+ H39 Q
40
+ H40 A
41
+ H41 P
42
+ H42 G
43
+ H43 K
44
+ H44 E
45
+ H45 R
46
+ H46 E
47
+ H47 F
48
+ H48 V
49
+ H49 A
50
+ H50 S
51
+ H51 I
52
+ H52 S
53
+ H52A R
54
+ H53 S
55
+ H54 G
56
+ H55 T
57
+ H56 L
58
+ H57 T
59
+ H58 R
60
+ H59 Y
61
+ H60 A
62
+ H61 D
63
+ H62 S
64
+ H63 A
65
+ H64 K
66
+ H65 G
67
+ H66 R
68
+ H67 F
69
+ H68 T
70
+ H69 I
71
+ H70 S
72
+ H71 V
73
+ H72 D
74
+ H73 N
75
+ H74 A
76
+ H75 K
77
+ H76 N
78
+ H77 T
79
+ H78 V
80
+ H79 S
81
+ H80 L
82
+ H81 Q
83
+ H82 M
84
+ H82A D
85
+ H82B N
86
+ H82C L
87
+ H83 N
88
+ H84 P
89
+ H85 D
90
+ H86 D
91
+ H87 T
92
+ H88 A
93
+ H89 V
94
+ H90 Y
95
+ H91 Y
96
+ H92 C
97
+ H93 A
98
+ H94 A
99
+ H95 D
100
+ H96 L
101
+ H97 H
102
+ H98 R
103
+ H99 P
104
+ H100 Y
105
+ H100A G
106
+ H100B P
107
+ H100C G
108
+ H100D T
109
+ H100E Q
110
+ H100F R
111
+ H100G S
112
+ H100H D
113
+ H100I E
114
+ H100J Y
115
+ H101 D
116
+ H102 S
117
+ H103 W
118
+ H104 G
119
+ H105 Q
120
+ H106 G
121
+ H107 T
122
+ H108 Q
123
+ H109 V
124
+ H110 T
125
+ H111 V
126
+ H112 S
127
+ H113 S
sabdab_dataset/2x1p/imgt/2x1p_B_H.ann ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
2
+ J Lamgla IGHJ4*01 IG IGHJ ? IGHJ4 NA False
3
+ V Lamgla IGHV1S4*01 IG IGHV IGHV1 IGHV1S4 NA False
sabdab_dataset/2x1p/sequence/2x1p_A_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2x1p_A|seqres|full
2
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
3
+ >2x1p_A|seqres|region: H
4
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
5
+ >2x1p_A|structure|full
6
+ --QLQESGGGLVQAGGSLRLSCAA------SFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVS-
sabdab_dataset/2x1p/sequence/2x1p_B_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2x1p_B|seqres|full
2
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
3
+ >2x1p_B|seqres|region: H
4
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
5
+ >2x1p_B|structure|full
6
+ --QLQESGGGLVQAGGSLRLSCAA------SFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVS-
sabdab_dataset/2x1p/sequence/2x1p_C_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2x1p_C|seqres|full
2
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
3
+ >2x1p_C|seqres|region: H
4
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
5
+ >2x1p_C|structure|full
6
+ --QLQESGGGLVQAGGSLRLSCAA------SFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVS-
sabdab_dataset/2x1p/sequence/2x1p_D_VH.fa ADDED
@@ -0,0 +1,6 @@
 
 
 
 
 
 
 
1
+ >2x1p_D|seqres|full
2
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
3
+ >2x1p_D|seqres|region: H
4
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
5
+ >2x1p_D|structure|full
6
+ --QLQESGGGLVQAGGSLRLSCAA------SFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVS-
sabdab_dataset/2x1p/sequence/2x1p_raw.pdb ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ >2x1p_A|type: H
2
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
3
+ >2x1p_C|type: H
4
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
5
+ >2x1p_B|type: H
6
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
7
+ >2x1p_D|type: H
8
+ QVQLQESGGGLVQAGGSLRLSCAASGRTFTSFAMGWFRQAPGKEREFVASISRSGTLTRYADSAKGRFTISVDNAKNTVSLQMDNLNPDDTAVYYCAADLHRPYGPGTQRSDEYDSWGQGTQVTVSS
sabdab_dataset/2x1p/structure/2x1p.pdb ADDED
The diff for this file is too large to render. See raw diff