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- sabdab_dataset/1q0y/abangle/1q0y.abangle +2 -0
- sabdab_dataset/1q0y/annotation/1q0y_H_VH.ann +119 -0
- sabdab_dataset/1q0y/annotation/1q0y_L_VL.ann +112 -0
- sabdab_dataset/1q0y/imgt/1q0y_H_H.ann +4 -0
- sabdab_dataset/1q0y/imgt/1q0y_L_L.ann +4 -0
- sabdab_dataset/1q0y/sequence/1q0y_H_VH.fa +6 -0
- sabdab_dataset/1q0y/sequence/1q0y_L_VL.fa +6 -0
- sabdab_dataset/1q0y/sequence/1q0y_raw.pdb +4 -0
- sabdab_dataset/1q0y/structure/1q0y.pdb +0 -0
- sabdab_dataset/1q0y/structure/chothia/1q0y.pdb +0 -0
- sabdab_dataset/1yzz/annotation/1yzz_A_VH.ann +118 -0
- sabdab_dataset/1yzz/annotation/1yzz_B_VH.ann +118 -0
- sabdab_dataset/1yzz/imgt/1yzz_A_H.ann +2 -0
- sabdab_dataset/1yzz/imgt/1yzz_B_H.ann +2 -0
- sabdab_dataset/1yzz/sequence/1yzz_A_VH.fa +6 -0
- sabdab_dataset/1yzz/sequence/1yzz_B_VH.fa +6 -0
- sabdab_dataset/1yzz/sequence/1yzz_raw.pdb +4 -0
- sabdab_dataset/1yzz/structure/1yzz.pdb +0 -0
- sabdab_dataset/1yzz/structure/chothia/1yzz.pdb +0 -0
- sabdab_dataset/2osl/abangle/2osl.abangle +3 -0
- sabdab_dataset/2osl/annotation/2osl_A_VH.ann +121 -0
- sabdab_dataset/2osl/annotation/2osl_B_VL.ann +109 -0
- sabdab_dataset/2osl/annotation/2osl_H_VH.ann +121 -0
- sabdab_dataset/2osl/annotation/2osl_L_VL.ann +109 -0
- sabdab_dataset/2osl/imgt/2osl_A_H.ann +4 -0
- sabdab_dataset/2osl/imgt/2osl_B_L.ann +4 -0
- sabdab_dataset/2osl/imgt/2osl_H_H.ann +4 -0
- sabdab_dataset/2osl/imgt/2osl_L_L.ann +4 -0
- sabdab_dataset/2osl/sequence/2osl_A_VH.fa +6 -0
- sabdab_dataset/2osl/sequence/2osl_B_VL.fa +6 -0
- sabdab_dataset/2osl/sequence/2osl_H_VH.fa +6 -0
- sabdab_dataset/2osl/sequence/2osl_L_VL.fa +6 -0
- sabdab_dataset/2osl/sequence/2osl_raw.pdb +12 -0
- sabdab_dataset/2osl/structure/2osl.pdb +0 -0
- sabdab_dataset/2osl/structure/chothia/2osl.pdb +0 -0
- sabdab_dataset/3g04/abangle/3g04.abangle +2 -0
- sabdab_dataset/3g04/annotation/3g04_A_VL.ann +113 -0
- sabdab_dataset/3g04/annotation/3g04_B_VH.ann +121 -0
- sabdab_dataset/3g04/imgt/3g04_A_L.ann +4 -0
- sabdab_dataset/3g04/imgt/3g04_B_H.ann +4 -0
- sabdab_dataset/3g04/sequence/3g04_A_VL.fa +6 -0
- sabdab_dataset/3g04/sequence/3g04_B_VH.fa +6 -0
- sabdab_dataset/3g04/sequence/3g04_raw.pdb +6 -0
- sabdab_dataset/3g04/structure/3g04.pdb +0 -0
- sabdab_dataset/3g04/structure/chothia/3g04.pdb +0 -0
- sabdab_dataset/3mac/abangle/3mac.abangle +2 -0
- sabdab_dataset/3mac/annotation/3mac_H_VH.ann +121 -0
- sabdab_dataset/3mac/annotation/3mac_L_VL.ann +108 -0
- sabdab_dataset/3mac/imgt/3mac_H_H.ann +4 -0
- sabdab_dataset/3mac/imgt/3mac_L_L.ann +4 -0
sabdab_dataset/1q0y/abangle/1q0y.abangle
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pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
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1q0y H L 0 -63.15 67.24 111.32 118.42 84.22 15.68
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sabdab_dataset/1q0y/annotation/1q0y_H_VH.ann
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sabdab_dataset/1q0y/annotation/1q0y_L_VL.ann
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sabdab_dataset/1q0y/imgt/1q0y_H_H.ann
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gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
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C Mus_musculus IGHG1*02 IG IGHC IGHG1 IGHG1 IGg True
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J Mus_musculus IGHJ4*01 IG IGHJ IGHJ4 IGHJ4 NA True
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V Mus_musculus IGHV1-9*01 IG IGHV IGHV1 IGHV1-9 NA True
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sabdab_dataset/1q0y/imgt/1q0y_L_L.ann
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gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
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C Mus_musculus IGLC1*01 IG IGLC IGLC1 IGLC1 NA True
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J Mus_musculus IGLJ1*01 IG IGLJ IGLJ1 IGLJ1 NA True
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V Mus_musculus IGLV1*01 IG IGLV IGLV1 IGLV1 NA True
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sabdab_dataset/1q0y/sequence/1q0y_H_VH.fa
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>1q0y_H|seqres|full
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| 2 |
+
EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSSASTTPPSVYPLAPGGXXXXXXSAMVTLGCLVKGYFPEPVTVVWNKGSLSTGTHTFPAVLAADLYTLSSSVTVSASSWPGQSVTCNVAHPASSTKVDKKIAPS
|
| 3 |
+
>1q0y_H|seqres|region: H
|
| 4 |
+
EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSS------------------------------------------------------------------------------------------------------
|
| 5 |
+
>1q0y_H|structure|full
|
| 6 |
+
EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSSASTTPPSVYPLAPGG------SAMVTLGCLVKGYFPEPVTVVWNKGSLSTGTHTFPAVLAADLYTLSSSVTVSASSWPGQSVTCNVAHPASSTKVDKKIAPS
|
sabdab_dataset/1q0y/sequence/1q0y_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1q0y_L|seqres|full
|
| 2 |
+
DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLSRA
|
| 3 |
+
>1q0y_L|seqres|region: L
|
| 4 |
+
DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQP----------------------------------------------------------------------------------------------------
|
| 5 |
+
>1q0y_L|structure|full
|
| 6 |
+
DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLSRA
|
sabdab_dataset/1q0y/sequence/1q0y_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1q0y_H|type: H
|
| 2 |
+
EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSSASTTPPSVYPLAPGGXXXXXXSAMVTLGCLVKGYFPEPVTVVWNKGSLSTGTHTFPAVLAADLYTLSSSVTVSASSWPGQSVTCNVAHPASSTKVDKKIAPS
|
| 3 |
+
>1q0y_L|type: L
|
| 4 |
+
DAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLSRA
|
sabdab_dataset/1q0y/structure/1q0y.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1q0y/structure/chothia/1q0y.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1yzz/annotation/1yzz_A_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 D
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 S
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 A
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 V
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 S
|
| 28 |
+
H28 T
|
| 29 |
+
H29 Y
|
| 30 |
+
H30 S
|
| 31 |
+
H31 P
|
| 32 |
+
H32 C
|
| 33 |
+
H33 T
|
| 34 |
+
H34 T
|
| 35 |
+
H35 G
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 S
|
| 50 |
+
H50 S
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H53 S
|
| 54 |
+
H54 P
|
| 55 |
+
H55 G
|
| 56 |
+
H56 T
|
| 57 |
+
H57 I
|
| 58 |
+
H58 Y
|
| 59 |
+
H59 Y
|
| 60 |
+
H60 Q
|
| 61 |
+
H61 D
|
| 62 |
+
H62 S
|
| 63 |
+
H63 V
|
| 64 |
+
H64 K
|
| 65 |
+
H65 G
|
| 66 |
+
H66 R
|
| 67 |
+
H67 F
|
| 68 |
+
H68 T
|
| 69 |
+
H69 I
|
| 70 |
+
H70 S
|
| 71 |
+
H71 R
|
| 72 |
+
H72 D
|
| 73 |
+
H73 N
|
| 74 |
+
H74 A
|
| 75 |
+
H75 K
|
| 76 |
+
H76 N
|
| 77 |
+
H77 T
|
| 78 |
+
H78 V
|
| 79 |
+
H79 Y
|
| 80 |
+
H80 L
|
| 81 |
+
H81 Q
|
| 82 |
+
H82 M
|
| 83 |
+
H82A N
|
| 84 |
+
H82B S
|
| 85 |
+
H82C L
|
| 86 |
+
H83 Q
|
| 87 |
+
H84 R
|
| 88 |
+
H85 E
|
| 89 |
+
H86 D
|
| 90 |
+
H87 T
|
| 91 |
+
H88 G
|
| 92 |
+
H89 M
|
| 93 |
+
H90 Y
|
| 94 |
+
H91 Y
|
| 95 |
+
H92 C
|
| 96 |
+
H93 Q
|
| 97 |
+
H94 I
|
| 98 |
+
H95 Q
|
| 99 |
+
H96 C
|
| 100 |
+
H97 G
|
| 101 |
+
H98 V
|
| 102 |
+
H99 R
|
| 103 |
+
H100 S
|
| 104 |
+
H100A I
|
| 105 |
+
H100B R
|
| 106 |
+
H101 E
|
| 107 |
+
H102 Y
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 Q
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 Q
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/1yzz/annotation/1yzz_B_VH.ann
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 D
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 E
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 G
|
| 10 |
+
H10 G
|
| 11 |
+
H11 S
|
| 12 |
+
H12 V
|
| 13 |
+
H13 Q
|
| 14 |
+
H14 A
|
| 15 |
+
H15 G
|
| 16 |
+
H16 G
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 R
|
| 20 |
+
H20 L
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 A
|
| 24 |
+
H24 V
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 S
|
| 28 |
+
H28 T
|
| 29 |
+
H29 Y
|
| 30 |
+
H30 S
|
| 31 |
+
H31 P
|
| 32 |
+
H32 C
|
| 33 |
+
H33 T
|
| 34 |
+
H34 T
|
| 35 |
+
H35 G
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 V
|
| 49 |
+
H49 S
|
| 50 |
+
H50 S
|
| 51 |
+
H51 I
|
| 52 |
+
H52 S
|
| 53 |
+
H53 S
|
| 54 |
+
H54 P
|
| 55 |
+
H55 G
|
| 56 |
+
H56 T
|
| 57 |
+
H57 I
|
| 58 |
+
H58 Y
|
| 59 |
+
H59 Y
|
| 60 |
+
H60 Q
|
| 61 |
+
H61 D
|
| 62 |
+
H62 S
|
| 63 |
+
H63 V
|
| 64 |
+
H64 K
|
| 65 |
+
H65 G
|
| 66 |
+
H66 R
|
| 67 |
+
H67 F
|
| 68 |
+
H68 T
|
| 69 |
+
H69 I
|
| 70 |
+
H70 S
|
| 71 |
+
H71 R
|
| 72 |
+
H72 D
|
| 73 |
+
H73 N
|
| 74 |
+
H74 A
|
| 75 |
+
H75 K
|
| 76 |
+
H76 N
|
| 77 |
+
H77 T
|
| 78 |
+
H78 V
|
| 79 |
+
H79 Y
|
| 80 |
+
H80 L
|
| 81 |
+
H81 Q
|
| 82 |
+
H82 M
|
| 83 |
+
H82A N
|
| 84 |
+
H82B S
|
| 85 |
+
H82C L
|
| 86 |
+
H83 Q
|
| 87 |
+
H84 R
|
| 88 |
+
H85 E
|
| 89 |
+
H86 D
|
| 90 |
+
H87 T
|
| 91 |
+
H88 G
|
| 92 |
+
H89 M
|
| 93 |
+
H90 Y
|
| 94 |
+
H91 Y
|
| 95 |
+
H92 C
|
| 96 |
+
H93 Q
|
| 97 |
+
H94 I
|
| 98 |
+
H95 Q
|
| 99 |
+
H96 C
|
| 100 |
+
H97 G
|
| 101 |
+
H98 V
|
| 102 |
+
H99 R
|
| 103 |
+
H100 S
|
| 104 |
+
H100A I
|
| 105 |
+
H100B R
|
| 106 |
+
H101 E
|
| 107 |
+
H102 Y
|
| 108 |
+
H103 W
|
| 109 |
+
H104 G
|
| 110 |
+
H105 Q
|
| 111 |
+
H106 G
|
| 112 |
+
H107 T
|
| 113 |
+
H108 Q
|
| 114 |
+
H109 V
|
| 115 |
+
H110 T
|
| 116 |
+
H111 V
|
| 117 |
+
H112 S
|
| 118 |
+
H113 S
|
sabdab_dataset/1yzz/imgt/1yzz_A_H.ann
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
V Camelus_dromedarius IGHV1S17*01 IG IGHV IGHV1 IGHV1S17 NA True
|
sabdab_dataset/1yzz/imgt/1yzz_B_H.ann
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
V Camelus_dromedarius IGHV1S17*01 IG IGHV IGHV1 IGHV1S17 NA True
|
sabdab_dataset/1yzz/sequence/1yzz_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1yzz_A|seqres|full
|
| 2 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSSHHHHHH
|
| 3 |
+
>1yzz_A|seqres|region: H
|
| 4 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSS------
|
| 5 |
+
>1yzz_A|structure|full
|
| 6 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCG--SIREYWGQGTQVTVS-------
|
sabdab_dataset/1yzz/sequence/1yzz_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1yzz_B|seqres|full
|
| 2 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSSHHHHHH
|
| 3 |
+
>1yzz_B|seqres|region: H
|
| 4 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSS------
|
| 5 |
+
>1yzz_B|structure|full
|
| 6 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGV--IREYWGQGTQVTVS-------
|
sabdab_dataset/1yzz/sequence/1yzz_raw.pdb
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>1yzz_A|type: H
|
| 2 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSSHHHHHH
|
| 3 |
+
>1yzz_B|type: H
|
| 4 |
+
DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSSHHHHHH
|
sabdab_dataset/1yzz/structure/1yzz.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/1yzz/structure/chothia/1yzz.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2osl/abangle/2osl.abangle
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
2osl A B 0 -57.26 74.20 113.35 118.85 83.59 16.29
|
| 3 |
+
2osl H L 0 -57.97 74.49 112.62 118.39 83.21 16.17
|
sabdab_dataset/2osl/annotation/2osl_A_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 M
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 N
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 T
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 R
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 A
|
| 51 |
+
H51 I
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A P
|
| 54 |
+
H53 G
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 D
|
| 58 |
+
H57 T
|
| 59 |
+
H58 S
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 S
|
| 100 |
+
H96 T
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 G
|
| 104 |
+
H100 G
|
| 105 |
+
H100A D
|
| 106 |
+
H100B W
|
| 107 |
+
H100C Y
|
| 108 |
+
H100D F
|
| 109 |
+
H101 N
|
| 110 |
+
H102 V
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 A
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 T
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 S
|
| 121 |
+
H113 A
|
sabdab_dataset/2osl/annotation/2osl_B_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
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|
|
|
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|
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|
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|
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|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 Q
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 S
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 I
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 K
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 M
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 S
|
| 28 |
+
L28 S
|
| 29 |
+
L29 V
|
| 30 |
+
L30 S
|
| 31 |
+
L32 Y
|
| 32 |
+
L33 I
|
| 33 |
+
L34 H
|
| 34 |
+
L35 W
|
| 35 |
+
L36 F
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 S
|
| 42 |
+
L43 S
|
| 43 |
+
L44 P
|
| 44 |
+
L45 K
|
| 45 |
+
L46 P
|
| 46 |
+
L47 W
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 A
|
| 50 |
+
L51 T
|
| 51 |
+
L52 S
|
| 52 |
+
L53 N
|
| 53 |
+
L54 L
|
| 54 |
+
L55 A
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 V
|
| 58 |
+
L59 P
|
| 59 |
+
L60 V
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 S
|
| 65 |
+
L66 G
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 T
|
| 69 |
+
L70 S
|
| 70 |
+
L71 Y
|
| 71 |
+
L72 S
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 R
|
| 77 |
+
L78 V
|
| 78 |
+
L79 E
|
| 79 |
+
L80 A
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 A
|
| 83 |
+
L84 A
|
| 84 |
+
L85 T
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 Q
|
| 89 |
+
L90 Q
|
| 90 |
+
L91 W
|
| 91 |
+
L92 T
|
| 92 |
+
L93 S
|
| 93 |
+
L94 N
|
| 94 |
+
L95 P
|
| 95 |
+
L96 P
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 G
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 L
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 T
|
| 109 |
+
L110 V
|
sabdab_dataset/2osl/annotation/2osl_H_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
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|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 Q
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 P
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 L
|
| 12 |
+
H12 V
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 A
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 M
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 N
|
| 34 |
+
H34 M
|
| 35 |
+
H35 H
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 K
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 T
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 R
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 I
|
| 49 |
+
H49 G
|
| 50 |
+
H50 A
|
| 51 |
+
H51 I
|
| 52 |
+
H52 Y
|
| 53 |
+
H52A P
|
| 54 |
+
H53 G
|
| 55 |
+
H54 N
|
| 56 |
+
H55 G
|
| 57 |
+
H56 D
|
| 58 |
+
H57 T
|
| 59 |
+
H58 S
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 N
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 K
|
| 68 |
+
H67 A
|
| 69 |
+
H68 T
|
| 70 |
+
H69 L
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 S
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 T
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 S
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 S
|
| 100 |
+
H96 T
|
| 101 |
+
H97 Y
|
| 102 |
+
H98 Y
|
| 103 |
+
H99 G
|
| 104 |
+
H100 G
|
| 105 |
+
H100A D
|
| 106 |
+
H100B W
|
| 107 |
+
H100C Y
|
| 108 |
+
H100D F
|
| 109 |
+
H101 N
|
| 110 |
+
H102 V
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 A
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 T
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 S
|
| 121 |
+
H113 A
|
sabdab_dataset/2osl/annotation/2osl_L_VL.ann
ADDED
|
@@ -0,0 +1,109 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 Q
|
| 2 |
+
L2 I
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 S
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 S
|
| 8 |
+
L8 P
|
| 9 |
+
L9 A
|
| 10 |
+
L10 I
|
| 11 |
+
L11 L
|
| 12 |
+
L12 S
|
| 13 |
+
L13 A
|
| 14 |
+
L14 S
|
| 15 |
+
L15 P
|
| 16 |
+
L16 G
|
| 17 |
+
L17 E
|
| 18 |
+
L18 K
|
| 19 |
+
L19 V
|
| 20 |
+
L20 T
|
| 21 |
+
L21 M
|
| 22 |
+
L22 T
|
| 23 |
+
L23 C
|
| 24 |
+
L24 R
|
| 25 |
+
L25 A
|
| 26 |
+
L26 S
|
| 27 |
+
L27 S
|
| 28 |
+
L28 S
|
| 29 |
+
L29 V
|
| 30 |
+
L30 S
|
| 31 |
+
L32 Y
|
| 32 |
+
L33 I
|
| 33 |
+
L34 H
|
| 34 |
+
L35 W
|
| 35 |
+
L36 F
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 S
|
| 42 |
+
L43 S
|
| 43 |
+
L44 P
|
| 44 |
+
L45 K
|
| 45 |
+
L46 P
|
| 46 |
+
L47 W
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 A
|
| 50 |
+
L51 T
|
| 51 |
+
L52 S
|
| 52 |
+
L53 N
|
| 53 |
+
L54 L
|
| 54 |
+
L55 A
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 V
|
| 58 |
+
L59 P
|
| 59 |
+
L60 V
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 S
|
| 65 |
+
L66 G
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 T
|
| 69 |
+
L70 S
|
| 70 |
+
L71 Y
|
| 71 |
+
L72 S
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 R
|
| 77 |
+
L78 V
|
| 78 |
+
L79 E
|
| 79 |
+
L80 A
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 A
|
| 83 |
+
L84 A
|
| 84 |
+
L85 T
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 Q
|
| 89 |
+
L90 Q
|
| 90 |
+
L91 W
|
| 91 |
+
L92 T
|
| 92 |
+
L93 S
|
| 93 |
+
L94 N
|
| 94 |
+
L95 P
|
| 95 |
+
L96 P
|
| 96 |
+
L97 T
|
| 97 |
+
L98 F
|
| 98 |
+
L99 G
|
| 99 |
+
L100 G
|
| 100 |
+
L101 G
|
| 101 |
+
L102 T
|
| 102 |
+
L103 K
|
| 103 |
+
L104 L
|
| 104 |
+
L105 E
|
| 105 |
+
L106 I
|
| 106 |
+
L107 K
|
| 107 |
+
L108 R
|
| 108 |
+
L109 T
|
| 109 |
+
L110 V
|
sabdab_dataset/2osl/imgt/2osl_A_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV1-12*01 IG IGHV IGHV1 IGHV1-12 NA True
|
sabdab_dataset/2osl/imgt/2osl_B_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-72*01 IG IGKV IGKV4 IGKV4-72 NA True
|
sabdab_dataset/2osl/imgt/2osl_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Mus_musculus IGHJ1*01 IG IGHJ IGHJ1 IGHJ1 NA True
|
| 4 |
+
V Mus_musculus IGHV1-12*01 IG IGHV IGHV1 IGHV1-12 NA True
|
sabdab_dataset/2osl/imgt/2osl_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGKC*01 IG IGKC IGKC IGKC NA True
|
| 3 |
+
J Mus_musculus IGKJ1*01 IG IGKJ IGKJ1 IGKJ1 NA True
|
| 4 |
+
V Mus_musculus IGKV4-72*01 IG IGKV IGKV4 IGKV4-72 NA True
|
sabdab_dataset/2osl/sequence/2osl_A_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2osl_A|seqres|full
|
| 2 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>2osl_A|seqres|region: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSA-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2osl_A|structure|full
|
| 6 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP---
|
sabdab_dataset/2osl/sequence/2osl_B_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2osl_B|seqres|full
|
| 2 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 3 |
+
>2osl_B|seqres|region: L
|
| 4 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTV--------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2osl_B|structure|full
|
| 6 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
sabdab_dataset/2osl/sequence/2osl_H_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2osl_H|seqres|full
|
| 2 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>2osl_H|seqres|region: H
|
| 4 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSA-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2osl_H|structure|full
|
| 6 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
sabdab_dataset/2osl/sequence/2osl_L_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2osl_L|seqres|full
|
| 2 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 3 |
+
>2osl_L|seqres|region: L
|
| 4 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTV--------------------------------------------------------------------------------------------------------
|
| 5 |
+
>2osl_L|structure|full
|
| 6 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
sabdab_dataset/2osl/sequence/2osl_raw.pdb
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>2osl_A|type: H
|
| 2 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 3 |
+
>2osl_B|type: L
|
| 4 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 5 |
+
>2osl_H|type: H
|
| 6 |
+
QVQLQQPGAELVKPGASVKMSCKASGYTFTSYNMHWVKQTPGRGLEWIGAIYPGNGDTSYNQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARSTYYGGDWYFNVWGAGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
|
| 7 |
+
>2osl_L|type: L
|
| 8 |
+
QIVLSQSPAILSASPGEKVTMTCRASSSVSYIHWFQQKPGSSPKPWIYATSNLASGVPVRFSGSGSGTSYSLTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
|
| 9 |
+
>2osl_Q|type: non-ab
|
| 10 |
+
NIYNCEPANPSEKNSPSTQYCYSIQ
|
| 11 |
+
>2osl_P|type: non-ab
|
| 12 |
+
NIYNCEPANPSEKNSPSTQYCYSIQ
|
sabdab_dataset/2osl/structure/2osl.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/2osl/structure/chothia/2osl.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/3g04/abangle/3g04.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
3g04 B A 0 -52.76 69.76 114.70 121.57 83.30 16.10
|
sabdab_dataset/3g04/annotation/3g04_A_VL.ann
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 L
|
| 2 |
+
L2 T
|
| 3 |
+
L3 V
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 P
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L11 V
|
| 11 |
+
L12 S
|
| 12 |
+
L13 G
|
| 13 |
+
L14 A
|
| 14 |
+
L15 P
|
| 15 |
+
L16 R
|
| 16 |
+
L17 Q
|
| 17 |
+
L18 R
|
| 18 |
+
L19 V
|
| 19 |
+
L20 T
|
| 20 |
+
L21 I
|
| 21 |
+
L22 S
|
| 22 |
+
L23 C
|
| 23 |
+
L24 S
|
| 24 |
+
L25 G
|
| 25 |
+
L26 N
|
| 26 |
+
L27 S
|
| 27 |
+
L28 S
|
| 28 |
+
L29 N
|
| 29 |
+
L30 I
|
| 30 |
+
L30A G
|
| 31 |
+
L30B N
|
| 32 |
+
L31 N
|
| 33 |
+
L32 A
|
| 34 |
+
L33 V
|
| 35 |
+
L34 N
|
| 36 |
+
L35 W
|
| 37 |
+
L36 Y
|
| 38 |
+
L37 Q
|
| 39 |
+
L38 Q
|
| 40 |
+
L39 L
|
| 41 |
+
L40 P
|
| 42 |
+
L41 G
|
| 43 |
+
L42 K
|
| 44 |
+
L43 A
|
| 45 |
+
L44 P
|
| 46 |
+
L45 K
|
| 47 |
+
L46 L
|
| 48 |
+
L47 L
|
| 49 |
+
L48 I
|
| 50 |
+
L49 Y
|
| 51 |
+
L50 Y
|
| 52 |
+
L51 D
|
| 53 |
+
L52 D
|
| 54 |
+
L53 Q
|
| 55 |
+
L54 L
|
| 56 |
+
L55 P
|
| 57 |
+
L56 S
|
| 58 |
+
L57 G
|
| 59 |
+
L58 V
|
| 60 |
+
L59 S
|
| 61 |
+
L60 D
|
| 62 |
+
L61 R
|
| 63 |
+
L62 F
|
| 64 |
+
L63 S
|
| 65 |
+
L64 G
|
| 66 |
+
L65 S
|
| 67 |
+
L66 R
|
| 68 |
+
L67 S
|
| 69 |
+
L68 G
|
| 70 |
+
L69 T
|
| 71 |
+
L70 S
|
| 72 |
+
L71 A
|
| 73 |
+
L72 S
|
| 74 |
+
L73 L
|
| 75 |
+
L74 A
|
| 76 |
+
L75 I
|
| 77 |
+
L76 R
|
| 78 |
+
L77 G
|
| 79 |
+
L78 L
|
| 80 |
+
L79 Q
|
| 81 |
+
L80 S
|
| 82 |
+
L81 E
|
| 83 |
+
L82 D
|
| 84 |
+
L83 E
|
| 85 |
+
L84 A
|
| 86 |
+
L85 D
|
| 87 |
+
L86 Y
|
| 88 |
+
L87 Y
|
| 89 |
+
L88 C
|
| 90 |
+
L89 T
|
| 91 |
+
L90 S
|
| 92 |
+
L91 W
|
| 93 |
+
L92 D
|
| 94 |
+
L93 D
|
| 95 |
+
L94 S
|
| 96 |
+
L95 L
|
| 97 |
+
L95A D
|
| 98 |
+
L95B S
|
| 99 |
+
L96 Q
|
| 100 |
+
L97 L
|
| 101 |
+
L98 F
|
| 102 |
+
L99 G
|
| 103 |
+
L100 G
|
| 104 |
+
L101 G
|
| 105 |
+
L102 T
|
| 106 |
+
L103 R
|
| 107 |
+
L104 L
|
| 108 |
+
L105 T
|
| 109 |
+
L106 V
|
| 110 |
+
L106A L
|
| 111 |
+
L107 G
|
| 112 |
+
L108 Q
|
| 113 |
+
L109 P
|
sabdab_dataset/3g04/annotation/3g04_B_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
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|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 V
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 E
|
| 17 |
+
H17 S
|
| 18 |
+
H18 L
|
| 19 |
+
H19 K
|
| 20 |
+
H20 I
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 R
|
| 24 |
+
H24 G
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 Y
|
| 28 |
+
H28 R
|
| 29 |
+
H29 F
|
| 30 |
+
H30 T
|
| 31 |
+
H31 S
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 W
|
| 34 |
+
H34 I
|
| 35 |
+
H35 N
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 L
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 K
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 M
|
| 49 |
+
H49 G
|
| 50 |
+
H50 R
|
| 51 |
+
H51 I
|
| 52 |
+
H52 D
|
| 53 |
+
H52A P
|
| 54 |
+
H53 T
|
| 55 |
+
H54 D
|
| 56 |
+
H55 S
|
| 57 |
+
H56 Y
|
| 58 |
+
H57 T
|
| 59 |
+
H58 N
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 S
|
| 62 |
+
H61 P
|
| 63 |
+
H62 S
|
| 64 |
+
H63 F
|
| 65 |
+
H64 K
|
| 66 |
+
H65 G
|
| 67 |
+
H66 H
|
| 68 |
+
H67 V
|
| 69 |
+
H68 T
|
| 70 |
+
H69 V
|
| 71 |
+
H70 S
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 K
|
| 75 |
+
H74 S
|
| 76 |
+
H75 I
|
| 77 |
+
H76 N
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 L
|
| 82 |
+
H81 Q
|
| 83 |
+
H82 W
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 K
|
| 88 |
+
H84 A
|
| 89 |
+
H85 S
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 G
|
| 93 |
+
H89 M
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 L
|
| 100 |
+
H96 E
|
| 101 |
+
H97 P
|
| 102 |
+
H98 G
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 S
|
| 105 |
+
H100A S
|
| 106 |
+
H100B T
|
| 107 |
+
H100C W
|
| 108 |
+
H100D S
|
| 109 |
+
H101 V
|
| 110 |
+
H102 N
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 Q
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 L
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 S
|
| 121 |
+
H113 S
|
sabdab_dataset/3g04/imgt/3g04_A_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGLC3*03 IG IGLC IGLC3 IGLC3 NA True
|
| 3 |
+
J Homo_sapiens IGLJ2*01 IG IGLJ IGLJ2 IGLJ2 NA True
|
| 4 |
+
V Homo_sapiens IGLV1-36*01 IG IGLV IGLV1 IGLV1-36 NA True
|
sabdab_dataset/3g04/imgt/3g04_B_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ5*01 IG IGHJ IGHJ5 IGHJ5 NA True
|
| 4 |
+
V Homo_sapiens IGHV5-a*01 IG IGHV IGHV5 IGHV5-a NA True
|
sabdab_dataset/3g04/sequence/3g04_A_VL.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>3g04_A|seqres|full
|
| 2 |
+
LTVLTQPPSVSGAPRQRVTISCSGNSSNIGNNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
|
| 3 |
+
>3g04_A|seqres|region: L
|
| 4 |
+
LTVLTQPPSVSGAPRQRVTISCSGNSSNIGNNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQP-------------------------------------------------------------------------------------------------------
|
| 5 |
+
>3g04_A|structure|full
|
| 6 |
+
LTVLTQPPSVSGAPRQRVTISCSGNSSNIGNNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAP----
|
sabdab_dataset/3g04/sequence/3g04_B_VH.fa
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>3g04_B|seqres|full
|
| 2 |
+
QVQLVQSGAEVKKPGESLKISCRGSGYRFTSYWINWVRQLPGKGLEWMGRIDPTDSYTNYSPSFKGHVTVSADKSINTAYLQWSSLKASDTGMYYCARLEPGYSSTWSVNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTS
|
| 3 |
+
>3g04_B|seqres|region: H
|
| 4 |
+
QVQLVQSGAEVKKPGESLKISCRGSGYRFTSYWINWVRQLPGKGLEWMGRIDPTDSYTNYSPSFKGHVTVSADKSINTAYLQWSSLKASDTGMYYCARLEPGYSSTWSVNWGQGTLVTVSS-----------------------------------------------------------------------------------------------------------
|
| 5 |
+
>3g04_B|structure|full
|
| 6 |
+
QVQLVQSGAEVKKPGESLKISCRGSGYRFTSYWINWVRQLPGKGLEWMGRIDPTDSYTNYSPSFKGHVTVSADKSINTAYLQWSSLKASDTGMYYCARLEPGYSSTWSVNWGQGTLVTVSSASTKGPSVFPLAPS------GTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP-------
|
sabdab_dataset/3g04/sequence/3g04_raw.pdb
ADDED
|
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
>3g04_A|type: L
|
| 2 |
+
LTVLTQPPSVSGAPRQRVTISCSGNSSNIGNNAVNWYQQLPGKAPKLLIYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
|
| 3 |
+
>3g04_C|type: non-ab
|
| 4 |
+
MGCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL
|
| 5 |
+
>3g04_B|type: H
|
| 6 |
+
QVQLVQSGAEVKKPGESLKISCRGSGYRFTSYWINWVRQLPGKGLEWMGRIDPTDSYTNYSPSFKGHVTVSADKSINTAYLQWSSLKASDTGMYYCARLEPGYSSTWSVNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTS
|
sabdab_dataset/3g04/structure/3g04.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/3g04/structure/chothia/3g04.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
sabdab_dataset/3mac/abangle/3mac.abangle
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pdb Hchain Lchain model HL HC1 HC2 LC1 LC2 dc
|
| 2 |
+
3mac H L 0 -53.40 70.11 115.28 118.76 83.97 16.00
|
sabdab_dataset/3mac/annotation/3mac_H_VH.ann
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
H1 Q
|
| 2 |
+
H2 V
|
| 3 |
+
H3 Q
|
| 4 |
+
H4 L
|
| 5 |
+
H5 V
|
| 6 |
+
H6 Q
|
| 7 |
+
H7 S
|
| 8 |
+
H8 G
|
| 9 |
+
H9 A
|
| 10 |
+
H10 E
|
| 11 |
+
H11 V
|
| 12 |
+
H12 K
|
| 13 |
+
H13 K
|
| 14 |
+
H14 P
|
| 15 |
+
H15 G
|
| 16 |
+
H16 S
|
| 17 |
+
H17 S
|
| 18 |
+
H18 V
|
| 19 |
+
H19 K
|
| 20 |
+
H20 V
|
| 21 |
+
H21 S
|
| 22 |
+
H22 C
|
| 23 |
+
H23 K
|
| 24 |
+
H24 A
|
| 25 |
+
H25 S
|
| 26 |
+
H26 G
|
| 27 |
+
H27 G
|
| 28 |
+
H28 T
|
| 29 |
+
H29 F
|
| 30 |
+
H30 N
|
| 31 |
+
H31 S
|
| 32 |
+
H32 Y
|
| 33 |
+
H33 A
|
| 34 |
+
H34 F
|
| 35 |
+
H35 S
|
| 36 |
+
H36 W
|
| 37 |
+
H37 V
|
| 38 |
+
H38 R
|
| 39 |
+
H39 Q
|
| 40 |
+
H40 A
|
| 41 |
+
H41 P
|
| 42 |
+
H42 G
|
| 43 |
+
H43 Q
|
| 44 |
+
H44 G
|
| 45 |
+
H45 L
|
| 46 |
+
H46 E
|
| 47 |
+
H47 W
|
| 48 |
+
H48 M
|
| 49 |
+
H49 G
|
| 50 |
+
H50 S
|
| 51 |
+
H51 I
|
| 52 |
+
H52 I
|
| 53 |
+
H52A P
|
| 54 |
+
H53 L
|
| 55 |
+
H54 F
|
| 56 |
+
H55 G
|
| 57 |
+
H56 F
|
| 58 |
+
H57 V
|
| 59 |
+
H58 V
|
| 60 |
+
H59 Y
|
| 61 |
+
H60 A
|
| 62 |
+
H61 Q
|
| 63 |
+
H62 K
|
| 64 |
+
H63 F
|
| 65 |
+
H64 Q
|
| 66 |
+
H65 G
|
| 67 |
+
H66 R
|
| 68 |
+
H67 V
|
| 69 |
+
H68 T
|
| 70 |
+
H69 I
|
| 71 |
+
H70 T
|
| 72 |
+
H71 A
|
| 73 |
+
H72 D
|
| 74 |
+
H73 E
|
| 75 |
+
H74 S
|
| 76 |
+
H75 T
|
| 77 |
+
H76 S
|
| 78 |
+
H77 T
|
| 79 |
+
H78 A
|
| 80 |
+
H79 Y
|
| 81 |
+
H80 M
|
| 82 |
+
H81 E
|
| 83 |
+
H82 L
|
| 84 |
+
H82A S
|
| 85 |
+
H82B S
|
| 86 |
+
H82C L
|
| 87 |
+
H83 R
|
| 88 |
+
H84 S
|
| 89 |
+
H85 E
|
| 90 |
+
H86 D
|
| 91 |
+
H87 T
|
| 92 |
+
H88 A
|
| 93 |
+
H89 V
|
| 94 |
+
H90 Y
|
| 95 |
+
H91 Y
|
| 96 |
+
H92 C
|
| 97 |
+
H93 A
|
| 98 |
+
H94 R
|
| 99 |
+
H95 Y
|
| 100 |
+
H96 F
|
| 101 |
+
H97 D
|
| 102 |
+
H98 T
|
| 103 |
+
H99 Y
|
| 104 |
+
H100 N
|
| 105 |
+
H100A N
|
| 106 |
+
H100B Y
|
| 107 |
+
H100C G
|
| 108 |
+
H100D F
|
| 109 |
+
H101 A
|
| 110 |
+
H102 N
|
| 111 |
+
H103 W
|
| 112 |
+
H104 G
|
| 113 |
+
H105 Q
|
| 114 |
+
H106 G
|
| 115 |
+
H107 T
|
| 116 |
+
H108 L
|
| 117 |
+
H109 V
|
| 118 |
+
H110 T
|
| 119 |
+
H111 V
|
| 120 |
+
H112 S
|
| 121 |
+
H113 S
|
sabdab_dataset/3mac/annotation/3mac_L_VL.ann
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
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|
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|
|
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|
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|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
L1 D
|
| 2 |
+
L2 I
|
| 3 |
+
L3 E
|
| 4 |
+
L4 L
|
| 5 |
+
L5 T
|
| 6 |
+
L6 Q
|
| 7 |
+
L7 P
|
| 8 |
+
L8 P
|
| 9 |
+
L9 S
|
| 10 |
+
L11 V
|
| 11 |
+
L12 S
|
| 12 |
+
L13 V
|
| 13 |
+
L14 V
|
| 14 |
+
L15 P
|
| 15 |
+
L16 G
|
| 16 |
+
L17 Q
|
| 17 |
+
L18 T
|
| 18 |
+
L19 A
|
| 19 |
+
L20 R
|
| 20 |
+
L21 I
|
| 21 |
+
L22 S
|
| 22 |
+
L23 C
|
| 23 |
+
L24 S
|
| 24 |
+
L25 G
|
| 25 |
+
L26 D
|
| 26 |
+
L27 N
|
| 27 |
+
L28 I
|
| 28 |
+
L29 P
|
| 29 |
+
L30 Y
|
| 30 |
+
L31 E
|
| 31 |
+
L32 Y
|
| 32 |
+
L33 A
|
| 33 |
+
L34 S
|
| 34 |
+
L35 W
|
| 35 |
+
L36 Y
|
| 36 |
+
L37 Q
|
| 37 |
+
L38 Q
|
| 38 |
+
L39 K
|
| 39 |
+
L40 P
|
| 40 |
+
L41 G
|
| 41 |
+
L42 Q
|
| 42 |
+
L43 A
|
| 43 |
+
L44 P
|
| 44 |
+
L45 V
|
| 45 |
+
L46 L
|
| 46 |
+
L47 V
|
| 47 |
+
L48 I
|
| 48 |
+
L49 Y
|
| 49 |
+
L50 G
|
| 50 |
+
L51 D
|
| 51 |
+
L52 N
|
| 52 |
+
L53 N
|
| 53 |
+
L54 R
|
| 54 |
+
L55 P
|
| 55 |
+
L56 S
|
| 56 |
+
L57 G
|
| 57 |
+
L58 I
|
| 58 |
+
L59 P
|
| 59 |
+
L60 E
|
| 60 |
+
L61 R
|
| 61 |
+
L62 F
|
| 62 |
+
L63 S
|
| 63 |
+
L64 G
|
| 64 |
+
L65 S
|
| 65 |
+
L66 N
|
| 66 |
+
L67 S
|
| 67 |
+
L68 G
|
| 68 |
+
L69 N
|
| 69 |
+
L70 T
|
| 70 |
+
L71 A
|
| 71 |
+
L72 T
|
| 72 |
+
L73 L
|
| 73 |
+
L74 T
|
| 74 |
+
L75 I
|
| 75 |
+
L76 S
|
| 76 |
+
L77 G
|
| 77 |
+
L78 T
|
| 78 |
+
L79 Q
|
| 79 |
+
L80 A
|
| 80 |
+
L81 E
|
| 81 |
+
L82 D
|
| 82 |
+
L83 E
|
| 83 |
+
L84 A
|
| 84 |
+
L85 D
|
| 85 |
+
L86 Y
|
| 86 |
+
L87 Y
|
| 87 |
+
L88 C
|
| 88 |
+
L89 A
|
| 89 |
+
L90 S
|
| 90 |
+
L91 W
|
| 91 |
+
L92 D
|
| 92 |
+
L93 S
|
| 93 |
+
L94 M
|
| 94 |
+
L95 T
|
| 95 |
+
L95A V
|
| 96 |
+
L95B D
|
| 97 |
+
L96 G
|
| 98 |
+
L97 V
|
| 99 |
+
L98 F
|
| 100 |
+
L99 G
|
| 101 |
+
L100 G
|
| 102 |
+
L101 G
|
| 103 |
+
L102 T
|
| 104 |
+
L103 K
|
| 105 |
+
L104 L
|
| 106 |
+
L105 T
|
| 107 |
+
L106 V
|
| 108 |
+
L107 L
|
sabdab_dataset/3mac/imgt/3mac_H_H.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGHG1*01 IG IGHC IGHG1 IGHG1 IGg True
|
| 3 |
+
J Homo_sapiens IGHJ6*01 IG IGHJ IGHJ6 IGHJ6 NA True
|
| 4 |
+
V Homo_sapiens IGHV1-69*01 IG IGHV IGHV1 IGHV1-69 NA True
|
sabdab_dataset/3mac/imgt/3mac_L_L.ann
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gene_type species allele receptor_type group subgroup gene isotype parsed_from_imgt
|
| 2 |
+
C Homo_sapiens IGLC2*01 IG IGLC IGLC2 IGLC2 NA True
|
| 3 |
+
J Homo_sapiens IGLJ2*01 IG IGLJ IGLJ2 IGLJ2 NA True
|
| 4 |
+
V Homo_sapiens IGLV3-1*01 IG IGLV IGLV3 IGLV3-1 NA True
|