Datasets:
Sync data card: fix stale Data Validation section (zea API reconstruct.py), target description, rotation_angles_deg path
Browse files
README.md
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> + `../pipeline.yaml` for the reference reconstruction.
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## Dataset Description
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Synthetic rotational 3D ultrasound acquisitions of point and
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with an **elevation-focused 1D linear array** that is rotated 180° about its axial
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axis (1° steps, 180 frames). Each acquisition stores the **raw per-element channel
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RF** for a single normal plane-wave transmit at every rotation angle — i.e. the data
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(`experiment__acq_exp_*.hdf5`), centre plane wave, ~182 measured rotation angles
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over ~180°.
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- **Frames per acquisition:** simulated 180 (one per 1° step); measured ~182 (the
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actual encoder angles are stored in `scan/rotation_angles_deg`, not necessarily
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uniform).
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- **Total size on disk:** simulated ~0.6–5 MB per case (zea gzip; point-target RF is
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sparse), measured ~80–92 MB per case (dense tissue RF); **~1.5 GB** for the full set
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N/A (synthetic phantom; no subjects/PHI).
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## Data Validation
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`../reconstruct.py` (**runnable, verified** —
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```
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python
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```
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The
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EnvelopeDetect → Normalize → LogCompress) is documented in `../pipeline.yaml`. The
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rotational **eSAF** across frames — the contribution of this dataset — is implemented in
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`../matlab/saf` (`recon_3d` → `safrot_backproj`); per-probe before/after eSAF reference
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images and a FWHM-vs-depth overview accompany the MATLAB `.mat` release
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(`../sim/dataset_overview.m`)
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## Known Issues
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- **Paired SAF label — on-axis targets (r0 = 0) do not narrow, by design.** eSAF
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> + `../pipeline.yaml` for the reference reconstruction.
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## Dataset Description
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Synthetic rotational 3D ultrasound acquisitions of point, pair, and off-axis targets, captured
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with an **elevation-focused 1D linear array** that is rotated 180° about its axial
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axis (1° steps, 180 frames). Each acquisition stores the **raw per-element channel
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RF** for a single normal plane-wave transmit at every rotation angle — i.e. the data
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(`experiment__acq_exp_*.hdf5`), centre plane wave, ~182 measured rotation angles
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over ~180°.
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- **Frames per acquisition:** simulated 180 (one per 1° step); measured ~182 (the
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actual encoder angles are stored in `custom/scan/rotation_angles_deg`, not necessarily
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uniform).
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- **Total size on disk:** simulated ~0.6–5 MB per case (zea gzip; point-target RF is
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sparse), measured ~80–92 MB per case (dense tissue RF); **~1.5 GB** for the full set
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N/A (synthetic phantom; no subjects/PHI).
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## Data Validation
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`../reconstruct.py` (**runnable, verified** — official `zea` API, no fallback code)
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loads one zea acquisition, reads its acquisition parameters via
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`zea.Config.from_path('../pipeline.yaml')` + `File.load_parameters`, beamforms the
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rotation frame closest to 90° (the frame where an off-axis target lies in-plane) with
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the native `zea.Pipeline` op chain **Cast → Demodulate → Beamform(delay_and_sum) →
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EnvelopeDetect → Normalize → LogCompress** defined in `../pipeline.yaml`, and writes a
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two-panel PNG: the B-mode image, and the per-frame probe **rotation angle**
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(`custom/scan/rotation_angles_deg`) so downstream users know how to interpret the
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frame axis — the special data this dataset adds, per reviewer feedback:
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```
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python ../reconstruct.py --input data/<probe>__<target>.hdf5 --output out.png
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```
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The rotational **eSAF** across frames — the contribution of this dataset — is implemented in
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`../matlab/saf` (`recon_3d` → `safrot_backproj`); per-probe before/after eSAF reference
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images and a FWHM-vs-depth overview accompany the MATLAB `.mat` release
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(`../sim/dataset_overview.m`), and the resulting paired `custom/labels/saf_bmode_volume`
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is stored in every `.hdf5` (see Dataset Format above).
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## Known Issues
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- **Paired SAF label — on-axis targets (r0 = 0) do not narrow, by design.** eSAF
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