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repo
string
pull_number
string
instance_id
string
issue_numbers
list
base_commit
string
patch
string
test_patch
string
problem_statement
string
hints_text
string
all_hints_text
string
commit_urls
list
created_at
string
commit_url
string
rebuild_cmds
list
test_cmds
list
print_cmds
list
log_parser
string
FAIL_TO_PASS
list
PASS_TO_PASS
list
docker_image
string
samtools/samtools
2235
samtools__samtools-2235
[ "1563" ]
abaa1583614a12cb446e8927b92723fdfde2025c
diff --git a/coverage.c b/coverage.c index 92f497dc8..7fcb34f7e 100644 --- a/coverage.c +++ b/coverage.c @@ -1,7 +1,7 @@ /* coverage.c -- samtools coverage subcommand Copyright (C) 2018,2019 Florian Breitwieser - Portions copyright (C) 2019-2021, 2023-2024 Genome Research Ltd. + Portions copyright (C) 201...
diff --git a/test/coverage/1.expected b/test/coverage/1.expected new file mode 100644 index 000000000..35cd07c2a --- /dev/null +++ b/test/coverage/1.expected @@ -0,0 +1,3 @@ +#rname startpos endpos numreads covbases coverage meandepth meanbaseq meanmapq +T1 1 40 6 19 47.5 0.725 7.62 36.7 +T2 1 40 6 8 20 0.4 7.12 49 dif...
Minimum depth threshold for "samtools coverage"? #### Is your feature request related to a problem? Please specify. I'd like a simple way to calculate the coverage stats for a bam file. The closest out-of-the-box thing I can find is `samtools coverage`. I run the command like so: ``` samtools coverage input.bam ...
Looks like a good idea, we'll consider it. Hi Did you implement it in Samtools? It doesn't look it, but this line is the thing you could manually tweak in a local copy: https://github.com/samtools/samtools/blob/develop/coverage.c#L603 If changed to `>=10` for example it'd need a minimum of 10 deep. However loo...
Looks like a good idea, we'll consider it. Hi Did you implement it in Samtools? It doesn't look it, but this line is the thing you could manually tweak in a local copy: https://github.com/samtools/samtools/blob/develop/coverage.c#L603 If changed to `>=10` for example it'd need a minimum of 10 deep. However loo...
[ "https://github.com/samtools/samtools/commit/3a769cfa9a71df943b00068566a171269e2789d3", "https://github.com/samtools/samtools/commit/6a807af098c28ef534b684aaa2b305e5776145d2" ]
2025-07-10T19:03:03Z
https://github.com/samtools/samtools/tree/abaa1583614a12cb446e8927b92723fdfde2025c
[ "autoheader && autoconf -Wno-syntax ; ./configure --with-htslib=htslib ; make" ]
[ "make test V=1 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
def parser(log: str) -> dict[str, str]: import re results = {} # Match lines like: test_name: <command> .. ok / .. failed test_re = re.compile(r'^(?P<name>[^\s].*?):\s*$') status_re = re.compile(r'^\.\. (ok|failed)', re.IGNORECASE) current_test = None for line in log.splitlines(): m...
[ "test_coverage" ]
[ "test_large_positions", "test_merge", "test_collate", "test_reference", "test_split", "test_quickcheck", "test_markdup", "test_bedcov", "test_reheader", "test_addrprg", "test_sort", "test_dict", "test_head", "test_fixmate", "test_stats", "test_idxstat", "test_ampliconclip", "test_i...
starryzhang/sweb.eval.x86_64.samtools_1776_samtools-2235
micropython/micropython
17683
micropython__micropython-17683
[ "17657" ]
554f114f181ee942ee3c74e44cef653604abbaef
diff --git a/ports/webassembly/objpyproxy.js b/ports/webassembly/objpyproxy.js index 0eafd0dec53de..64703d78a5589 100644 --- a/ports/webassembly/objpyproxy.js +++ b/ports/webassembly/objpyproxy.js @@ -165,34 +165,35 @@ const py_proxy_handler = { if (prop === "_ref") { return target._ref; ...
diff --git a/tests/ports/webassembly/py_proxy_get.mjs b/tests/ports/webassembly/py_proxy_get.mjs new file mode 100644 index 0000000000000..825de7cabeb78 --- /dev/null +++ b/tests/ports/webassembly/py_proxy_get.mjs @@ -0,0 +1,14 @@ +// Test `<py-obj> get <attr>` on the JavaScript side, which tests PyProxy.get. + +const ...
webassembly: getting JS symbols implicitly also throws errors ### Port, board and/or hardware webassembly ### MicroPython version MicroPython webassembly latest from *npm* ### Reproduction In here we solved the `in` operation check https://github.com/micropython/micropython/pull/17604 but if any libraries tries to...
thanks @dpgeorge , any chance this can make it to npm too?
[ "https://github.com/micropython/micropython/commit/c72a3e528d7909c212596b52de5f9a5fe0161f17" ]
2025-07-15T08:45:08Z
https://github.com/micropython/micropython/tree/554f114f181ee942ee3c74e44cef653604abbaef
[ "make -C mpy-cross ; make -C ports/unix" ]
[ "make -C ports/unix test 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
def parser(log: str) -> dict[str, str]: import re results: dict[str, str] = {} for line in log.splitlines(): m = re.match(r'(pass|FAIL|skip)\s+(\S+)', line) if m: status_word, test_name = m.groups() status_word = status_word.lower() if status_word == "pass...
[ "micropython/heapalloc_fail_dict.py", "micropython/heapalloc_int_from_bytes.py", "float/float_divmod.py", "extmod/json_load.py", "extmod/re1.py", "float/cmath_dunder.py", "extmod/vfs_userfs.py", "float/builtin_float_minmax.py", "float/lexer.py", "basics/struct1.py", "basics/try_else.py", "micr...
[ "basics/memoryview1.py", "basics/int_big_rshift.py", "io/file_stdio.py", "extmod/re_sub.py", "basics/bytearray_construct_endian.py", "basics/dict_fromkeys.py", "micropython/viper_binop_arith_uint.py", "misc/non_compliant_lexer.py", "basics/int_big_add.py", "io/file_stdio2.py", "basics/class_dict...
starryzhang/sweb.eval.x86_64.micropython_1776_micropython-17683
timescale/timescaledb
8559
timescale__timescaledb-8559
[ "6902" ]
bbbebbfa978465bfdf6d0bac418ee4d269ad4da8
diff --git a/.unreleased/pr_8559 b/.unreleased/pr_8559 new file mode 100644 index 00000000000..79123483309 --- /dev/null +++ b/.unreleased/pr_8559 @@ -0,0 +1,2 @@ +Fixes: #8559 Fix `timestamp out of range` using `end_offset=NULL` on CAgg refresh policy +Thanks: @nofalx for reporting the error when using `end_offset=NUL...
diff --git a/tsl/test/expected/cagg_policy.out b/tsl/test/expected/cagg_policy.out index aaa6d5b8621..d85f7f4a24c 100644 --- a/tsl/test/expected/cagg_policy.out +++ b/tsl/test/expected/cagg_policy.out @@ -1400,3 +1400,72 @@ SELECT timescaledb_experimental.add_policies('cagg'); f (1 row) +-- Issue #6902 +-- Fix tim...
[Bug]: Continuous aggregates with time_bucket hourly and timezone fail to update ### What type of bug is this? Incorrect result, Unexpected error ### What subsystems and features are affected? Continuous aggregate ### What happened? I have a number of Continuous aggregates that uses hourly buckets ``` time_buck...
Thanks for the script, it reproduces for me. The error is related to the NULL value of the `end_offset`, so probably as a workaround you can set it to something far in the future but not null. @fabriziomello should the end point calculation follow the same logic as `cagg_get_time_min`? Currently the null end point...
Thanks for the script, it reproduces for me. The error is related to the NULL value of the `end_offset`, so probably as a workaround you can set it to something far in the future but not null. @fabriziomello should the end point calculation follow the same logic as `cagg_get_time_min`? Currently the null end point...
[ "https://github.com/timescale/timescaledb/commit/e39f398c62e9d3271ad15179f46aa4985ea54f4a" ]
2025-08-28T23:08:57Z
https://github.com/timescale/timescaledb/tree/bbbebbfa978465bfdf6d0bac418ee4d269ad4da8
[ "cmake --build build --parallel ; make -C build install" ]
[ "PATH=$PATH:/usr/lib/postgresql/17/bin pkill -u postgres postgres || true && rm -rf /tmp/pgdata && chown -R postgres:postgres /testbed/build && su - postgres -c \"PATH=$PATH:/usr/lib/postgresql/17/bin make -C /testbed/build installcheck\" 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
def parser(log: str) -> dict[str, str]: import re results = {} for line in log.splitlines(): m = re.match(r'(ok|not ok)\s+\d+\s+\+?\s*([^\s]+)', line) if m: status_word, test_name = m.groups() status = "pass" if status_word == "ok" else "fail" results[test...
[ "cagg_policy" ]
[ "compression_qualpushdown", "chunk_column_stats", "cagg_deprecated_bucket_ng", "compress_default", "cagg_refresh_using_trigger", "cagg_policy_concurrent", "compression_sorted_merge", "modify_exclusion", "ordered_append-17", "compress_auto_sparse_index", "vector_agg_groupagg", "merge_append_par...
starryzhang/sweb.eval.x86_64.timescale_1776_timescaledb-8559
cilium/tetragon
4069
cilium__tetragon-4069
[ "4056" ]
67530967429bb42b665a7c7e69cdbc200247ccb4
"diff --git a/api/v1/README.md b/api/v1/README.md\nindex 6bf750caea6..85596fcf70f 100644\n--- a/api/(...TRUNCATED)
"diff --git a/pkg/process/podinfo_test.go b/pkg/process/podinfo_test.go\nindex 46dba2c18b0..b06ec51f(...TRUNCATED)
"Include pod UID in the log\n### Is there an existing issue for this?\n\n- [x] I have searched the e(...TRUNCATED)
"As discussed in Slack, to implement this you can get inspiration from this https://github.com/ciliu(...TRUNCATED)
"As discussed in Slack, to implement this you can get inspiration from this https://github.com/ciliu(...TRUNCATED)
[ "https://github.com/cilium/tetragon/commit/3d566e06298cffff24f369932ac92e59f3049878" ]
2025-08-29T05:43:42Z
https://github.com/cilium/tetragon/tree/67530967429bb42b665a7c7e69cdbc200247ccb4
[ "export PATH=/usr/local/go/bin:$PATH ; make vendor ; make tetragon" ]
[ "go test ./... -v 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results = {}\n pattern = re.compile((...TRUNCATED)
[ "TestK8sWatcher_GetPodInfo", "TestProcessCache" ]
["TestTracepointFieldParsing","FuzzProtojsonCompatibility/636add9a0930f826","FuzzProtojsonCompatibil(...TRUNCATED)
starryzhang/sweb.eval.x86_64.cilium_1776_tetragon-4069
quickjs-ng/quickjs
1113
quickjs-ng__quickjs-1113
[ "1112" ]
3d3b58d8815f0eef8122fad142a65f3bd21d273b
"diff --git a/quickjs.c b/quickjs.c\nindex 8b9a3b573..01eb10123 100644\n--- a/quickjs.c\n+++ b/quick(...TRUNCATED)
"diff --git a/tests/test_builtin.js b/tests/test_builtin.js\nindex 3c37f5930..2e86cb4a2 100644\n--- (...TRUNCATED)
"Cannot extend TypedArray\nThis should work:\n```js\nvar TypedArray = Object.getPrototypeOf(Uint8Arr(...TRUNCATED)
[ "https://github.com/quickjs-ng/quickjs/commit/c5e673abf837fced6d324174d653dae7a8584814" ]
2025-06-24T20:23:51Z
https://github.com/quickjs-ng/quickjs/tree/3d3b58d8815f0eef8122fad142a65f3bd21d273b
[ "git submodule update --init --checkout --depth 1 ; make" ]
["./build/run-test262 -vv -m -a -c test262.conf -c test262-fast.conf test262 2>&1 | tee test-output.(...TRUNCATED)
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results: dict[str, str] = {}\n # Mat(...TRUNCATED)
["test262/test/language/expressions/class/dstr/async-gen-meth-dflt-ary-init-iter-get-err.js","test26(...TRUNCATED)
["test262/test/built-ins/Array/fromAsync/this-constructor-with-unsettable-element-closes-sync-iterat(...TRUNCATED)
starryzhang/sweb.eval.x86_64.quickjs-ng_1776_quickjs-1113
fluent/fluent-bit
10563
fluent__fluent-bit-10563
[ "10560" ]
c872957b57b2a8704e3b8cbc7f3994b430f96140
"diff --git a/plugins/out_loki/loki.c b/plugins/out_loki/loki.c\nindex 2bdcaba3539..ee7a4313a89 1006(...TRUNCATED)
"diff --git a/tests/runtime/out_loki.c b/tests/runtime/out_loki.c\nindex a440fc0b692..e177b01e675 10(...TRUNCATED)
"Inconsistent `Remove_Keys` behavior when running Loki output with multiple workers / threads\n## Bu(...TRUNCATED)
Wow, that was fast! Thanks!
["https://github.com/fluent/fluent-bit/commit/f54cd8193712aed8eb64af38928ed76ef76e619f","https://git(...TRUNCATED)
2025-07-09T04:16:04Z
https://github.com/fluent/fluent-bit/tree/c872957b57b2a8704e3b8cbc7f3994b430f96140
["cmake -S . -B build -G Ninja -DCMAKE_BUILD_TYPE=Release -DFLB_DEV=On -DFLB_TESTS_RUNTIME=On -DFLB_(...TRUNCATED)
[ "ctest --test-dir build --output-on-failure | tee test-output.log" ]
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results: dict[str, str] = {}\n # Mat(...TRUNCATED)
[ "flb-rt-out_stackdriver" ]
["flb-rt-out_null","flb-rt-out_stdout","flb-rt-core_accept_timeout","flb-rt-custom_calyptia_input_te(...TRUNCATED)
starryzhang/sweb.eval.x86_64.fluent_1776_fluent-bit-10563
php/php-src
19478
php__php-src-19478
[ "19476" ]
9c754baa99c795a65f40b94e4183150889895218
"diff --git a/NEWS b/NEWS\nindex 77c1e32ff3a82..0180f5b3478a6 100644\n--- a/NEWS\n+++ b/NEWS\n@@ -5,(...TRUNCATED)
"diff --git a/Zend/tests/pipe_operator_reference_context.phpt b/Zend/tests/pipe_operator_reference_c(...TRUNCATED)
"pipe operator (`|>`) fails to correctly handle returning by reference\n### Description\n\nThere app(...TRUNCATED)
[ "https://github.com/php/php-src/commit/784755f5defdcaee7b7265bbf5c2d2c1ec3d2e42" ]
2025-08-14T11:24:49Z
https://github.com/php/php-src/tree/9c754baa99c795a65f40b94e4183150889895218
["apt-get install -y pkg-config build-essential autoconf bison re2c libxml2-dev libsqlite3-dev ; ./c(...TRUNCATED)
[ "make test 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results = {}\n # Match lines like: T(...TRUNCATED)
[ "Zend/tests/pipe_operator_reference_context.phpt" ]
["Zend/tests/dynamic_prop_deprecation_002.phpt","ext/standard/tests/strings/utf8.phpt","tests/lang/b(...TRUNCATED)
starryzhang/sweb.eval.x86_64.php_1776_php-src-19478
varnishcache/varnish-cache
4370
varnishcache__varnish-cache-4370
[ "4329" ]
c3b45a3140d340b2ed1a529b41253c2eb4ba70ae
"diff --git a/bin/varnishd/cache/cache_req_fsm.c b/bin/varnishd/cache/cache_req_fsm.c\nindex 8038102(...TRUNCATED)
"diff --git a/bin/varnishtest/tests/c00055.vtc b/bin/varnishtest/tests/c00055.vtc\nindex 0484219671.(...TRUNCATED)
"Bad chunked encoding should cause 400 error, not 503\n### Expected Behavior\n\nBad chunked encoding(...TRUNCATED)
bugwash agrees.
bugwash agrees.
["https://github.com/varnishcache/varnish-cache/commit/dbdf05e0b7ec5cb7d4f7f8e991ebc670e011c257","ht(...TRUNCATED)
2025-07-21T12:26:30Z
https://github.com/varnishcache/varnish-cache/tree/c3b45a3140d340b2ed1a529b41253c2eb4ba70ae
[ "./configure ; make -j$(nproc)" ]
[ "make check VERBOSE=1 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results = {}\n for line in log.split(...TRUNCATED)
[ "tests/r02722.vtc", "tests/f00001.vtc", "tests/c00067.vtc", "tests/f00016.vtc", "tests/c00055.vtc" ]
["vtest2/tests/a00002.vtc","vtest2/tests/a02016.vtc","tests/b00073.vtc","tests/r00502.vtc","tests/r0(...TRUNCATED)
starryzhang/sweb.eval.x86_64.varnishcache_1776_varnish-cache-4370
rsyslog/rsyslog
6047
rsyslog__rsyslog-6047
[ "2424" ]
4b3ce60b76362c16f0bece97bafc57fe4aaa3922
"diff --git a/grammar/rainerscript.c b/grammar/rainerscript.c\nindex 82638305f4..b435b393f3 100644\n(...TRUNCATED)
"diff --git a/tests/rscript_random_warning.sh b/tests/rscript_random_warning.sh\nnew file mode 10075(...TRUNCATED)
"rainerscript: random() function does not provide user-visible warning when passed an unsupported va(...TRUNCATED)
[ "https://github.com/rsyslog/rsyslog/commit/2f62e6e76b961ae755d4103d60c010af42eedd7b" ]
2025-08-28T10:26:55Z
https://github.com/rsyslog/rsyslog/tree/4b3ce60b76362c16f0bece97bafc57fe4aaa3922
["autoreconf -fvi ; ./configure --enable-imfile --enable-mysql --enable-usertools --enable-pgsql --e(...TRUNCATED)
["./configure --enable-testbench --enable-imdiag --enable-omstdout && make -j$(nproc) && make check (...TRUNCATED)
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results = {}\n for line in log.split(...TRUNCATED)
[ "omfwd-lb-1target-retry-full_buf.sh" ]
["rscript_substring.sh","rscript_set_modify.sh","imuxsock_logger_err.sh","func-substring-invld-start(...TRUNCATED)
starryzhang/sweb.eval.x86_64.rsyslog_1776_rsyslog-6047
aws/s2n-tls
5481
aws__s2n-tls-5481
[ "5477" ]
795f4dc65335b56dfb356d6eaac9429fbae5b75b
"diff --git a/tls/s2n_auth_selection.c b/tls/s2n_auth_selection.c\nindex 5678f4ae82a..6971f9495e3 10(...TRUNCATED)
"diff --git a/tests/integrationv2/common.py b/tests/integrationv2/common.py\nindex 5b526a27fbd..2667(...TRUNCATED)
"s2n-tls server reports signature scheme with RSA kex\n### Security issue notifications\n\nIf you di(...TRUNCATED)
["https://github.com/aws/s2n-tls/commit/4f5133dc6c56030fd2b9691f75fd5e7f6259df09","https://github.co(...TRUNCATED)
2025-08-25T16:58:39Z
https://github.com/aws/s2n-tls/tree/795f4dc65335b56dfb356d6eaac9429fbae5b75b
["apt-get install -y libssl-dev ; cmake -S . -B build -G Ninja -DCMAKE_BUILD_TYPE=Release ; cmake --(...TRUNCATED)
[ "ctest --test-dir build --verbose 2>&1 | tee test-output.log" ]
[ "cat test-output.log" ]
"def parser(log: str) -> dict[str, str]:\n import re\n results: dict[str, str] = {}\n # Mat(...TRUNCATED)
[ "s2n_signature_algorithms_test", "s2n_handshake_test" ]
["s2n_client_signature_algorithms_extension_test","s2n_tls13_server_cert_test","s2n_client_session_t(...TRUNCATED)
starryzhang/sweb.eval.x86_64.aws_1776_s2n-tls-5481
End of preview. Expand in Data Studio

This is the multi - language version of SWE-bench-Live (repository_link ; paper_link).

We crawled GitHub issues as SWE tasks for coding agents to solve.

We used RepoLaunch (repository_link) to setup docker images as the problem-solving sandboxes for each instance.

Each split is task set of one language.

Each split is filtered by prompting LLM -- a task instance is discarded if LLM cannot infer test patch from problem statement or problem statement contains solution (in NL or code).

Dataset Schema

Field Type
instance_id str
repo str
pull_number str
issue_numbers list[str]
base_commit str
problem_statement str
patch str
test_patch str
hints_text Optional[str] from the discussions of the issue
all_hints_text Optional[str]
commit_urls list[str]
created_at str in ISO datetime format
commit_url str
rebuild_cmds list[str]
test_cmds list[str]
log_parser str
FAIL_TO_PASS list[str]
PASS_TO_PASS list[str]
docker_image str

Evaluation Protocol

SWE-bench-Live evaluation strictly follows the original SWE-bench protocol:

  1. During a rollout, the agent may access only the problem_statement field of the Hugging Face dataset and the docker image of the task instance. It must not access any other fields, such as hint, FAIL_TO_PASS, or test_patch. The test_patch must not be applied to the repository before or during the rollout. The agent must perform a single rollout based solely on the problem_statement on the docker container started from the image of the task instance.
  2. Prompts, skills, and workflow instructions provided to the agent must not contain solutions specific to any task instance. They may contain only general instructions for the entire benchmark or, at most, for a specific repository. The agent must not use results from the ground-truth evaluation script to refine its solution.

Compliant prompts should follow the SWE-agent prompt and the OpenHands prompt, which contain only the problem statement and general workflow instructions.

When submitting results to our submissions repository, you must include your agent's raw rollout trajectories so that the maintainers can verify compliance with the SWE-bench protocol. A trajectory consists of the complete sequence of inputs to and outputs from your agent across all rollout rounds for a given task instance, including the initial prompt provided to the agent. Please follow this SWE-agent compliant trajectory example when submitting your result. If your organization's policies prohibit sharing the complete set of trajectories, you must provide at least some representative samples for verification. There is a checklist when submitting a PR to help you check whether you meet the protocol requirements again.

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