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--- |
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hide: |
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- navigation |
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--- |
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# Python API |
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PyIceberg is based around catalogs to load tables. First step is to instantiate a catalog that loads tables. Let's use the following configuration to define a catalog called `prod`: |
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```yaml |
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catalog: |
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prod: |
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uri: http://rest-catalog/ws/ |
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credential: t-1234:secret |
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``` |
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Note that multiple catalogs can be defined in the same `.pyiceberg.yaml`: |
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```yaml |
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catalog: |
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hive: |
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uri: thrift://127.0.0.1:9083 |
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s3.endpoint: http://127.0.0.1:9000 |
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s3.access-key-id: admin |
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s3.secret-access-key: password |
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rest: |
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uri: https://rest-server:8181/ |
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warehouse: my-warehouse |
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``` |
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and loaded in python by calling `load_catalog(name="hive")` and `load_catalog(name="rest")`. |
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This information must be placed inside a file called `.pyiceberg.yaml` located either in the `$HOME` or `%USERPROFILE%` directory (depending on whether the operating system is Unix-based or Windows-based, respectively) or in the `$PYICEBERG_HOME` directory (if the corresponding environment variable is set). |
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For more details on possible configurations refer to the [specific page](https://py.iceberg.apache.org/configuration/). |
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Then load the `prod` catalog: |
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```python |
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from pyiceberg.catalog import load_catalog |
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catalog = load_catalog( |
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"docs", |
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**{ |
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"uri": "http://127.0.0.1:8181", |
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"s3.endpoint": "http://127.0.0.1:9000", |
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"py-io-impl": "pyiceberg.io.pyarrow.PyArrowFileIO", |
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"s3.access-key-id": "admin", |
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"s3.secret-access-key": "password", |
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} |
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) |
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``` |
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Let's create a namespace: |
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```python |
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catalog.create_namespace("docs_example") |
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``` |
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And then list them: |
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```python |
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ns = catalog.list_namespaces() |
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assert ns == [("docs_example",)] |
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``` |
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And then list tables in the namespace: |
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```python |
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catalog.list_tables("docs_example") |
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``` |
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## Create a table |
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To create a table from a catalog: |
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```python |
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from pyiceberg.schema import Schema |
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from pyiceberg.types import ( |
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TimestampType, |
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FloatType, |
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DoubleType, |
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StringType, |
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NestedField, |
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StructType, |
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) |
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schema = Schema( |
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NestedField(field_id=1, name="datetime", field_type=TimestampType(), required=True), |
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NestedField(field_id=2, name="symbol", field_type=StringType(), required=True), |
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NestedField(field_id=3, name="bid", field_type=FloatType(), required=False), |
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NestedField(field_id=4, name="ask", field_type=DoubleType(), required=False), |
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NestedField( |
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field_id=5, |
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name="details", |
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field_type=StructType( |
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NestedField( |
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field_id=4, name="created_by", field_type=StringType(), required=False |
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), |
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), |
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required=False, |
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), |
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) |
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from pyiceberg.partitioning import PartitionSpec, PartitionField |
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from pyiceberg.transforms import DayTransform |
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partition_spec = PartitionSpec( |
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PartitionField( |
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source_id=1, field_id=1000, transform=DayTransform(), name="datetime_day" |
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) |
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) |
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from pyiceberg.table.sorting import SortOrder, SortField |
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from pyiceberg.transforms import IdentityTransform |
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# Sort on the symbol |
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sort_order = SortOrder(SortField(source_id=2, transform=IdentityTransform())) |
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catalog.create_table( |
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identifier="docs_example.bids", |
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schema=schema, |
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location="s3://pyiceberg", |
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partition_spec=partition_spec, |
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sort_order=sort_order, |
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) |
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``` |
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To create a table using a pyarrow schema: |
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```python |
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import pyarrow as pa |
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schema = pa.schema( |
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[ |
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pa.field("foo", pa.string(), nullable=True), |
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pa.field("bar", pa.int32(), nullable=False), |
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pa.field("baz", pa.bool_(), nullable=True), |
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] |
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) |
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catalog.create_table( |
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identifier="docs_example.bids", |
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schema=schema, |
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) |
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``` |
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To create a table with some subsequent changes atomically in a transaction: |
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```python |
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with catalog.create_table_transaction( |
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identifier="docs_example.bids", |
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schema=schema, |
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location="s3://pyiceberg", |
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partition_spec=partition_spec, |
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sort_order=sort_order, |
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) as txn: |
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with txn.update_schema() as update_schema: |
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update_schema.add_column(path="new_column", field_type=StringType()) |
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with txn.update_spec() as update_spec: |
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update_spec.add_identity("symbol") |
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txn.set_properties(test_a="test_aa", test_b="test_b", test_c="test_c") |
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``` |
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## Load a table |
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### Catalog table |
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Loading the `bids` table: |
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```python |
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table = catalog.load_table("docs_example.bids") |
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# Equivalent to: |
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table = catalog.load_table(("docs_example", "bids")) |
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# The tuple syntax can be used if the namespace or table contains a dot. |
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``` |
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This returns a `Table` that represents an Iceberg table that can be queried and altered. |
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### Static table |
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To load a table directly from a metadata file (i.e., **without** using a catalog), you can use a `StaticTable` as follows: |
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```python |
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from pyiceberg.table import StaticTable |
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static_table = StaticTable.from_metadata( |
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"s3://warehouse/wh/nyc.db/taxis/metadata/00002-6ea51ce3-62aa-4197-9cf8-43d07c3440ca.metadata.json" |
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) |
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``` |
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The static-table is considered read-only. |
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## Check if a table exists |
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To check whether the `bids` table exists: |
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```python |
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catalog.table_exists("docs_example.bids") |
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``` |
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Returns `True` if the table already exists. |
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## Write support |
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With PyIceberg 0.6.0 write support is added through Arrow. Let's consider an Arrow Table: |
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```python |
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import pyarrow as pa |
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df = pa.Table.from_pylist( |
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[ |
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{"city": "Amsterdam", "lat": 52.371807, "long": 4.896029}, |
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{"city": "San Francisco", "lat": 37.773972, "long": -122.431297}, |
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{"city": "Drachten", "lat": 53.11254, "long": 6.0989}, |
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{"city": "Paris", "lat": 48.864716, "long": 2.349014}, |
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], |
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) |
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``` |
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Next, create a table based on the schema: |
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```python |
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from pyiceberg.catalog import load_catalog |
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catalog = load_catalog("default") |
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from pyiceberg.schema import Schema |
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from pyiceberg.types import NestedField, StringType, DoubleType |
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schema = Schema( |
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NestedField(1, "city", StringType(), required=False), |
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NestedField(2, "lat", DoubleType(), required=False), |
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NestedField(3, "long", DoubleType(), required=False), |
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) |
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tbl = catalog.create_table("default.cities", schema=schema) |
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``` |
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Now write the data to the table: |
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<!-- prettier-ignore-start --> |
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!!! note inline end "Fast append" |
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PyIceberg default to the [fast append](https://iceberg.apache.org/spec/#snapshots) to minimize the amount of data written. This enables quick writes, reducing the possibility of conflicts. The downside of the fast append is that it creates more metadata than a normal commit. [Compaction is planned](https://github.com/apache/iceberg-python/issues/270) and will automatically rewrite all the metadata when a threshold is hit, to maintain performant reads. |
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<!-- prettier-ignore-end --> |
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```python |
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tbl.append(df) |
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# or |
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tbl.overwrite(df) |
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``` |
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The data is written to the table, and when the table is read using `tbl.scan().to_arrow()`: |
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``` |
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pyarrow.Table |
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city: string |
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lat: double |
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long: double |
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---- |
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city: [["Amsterdam","San Francisco","Drachten","Paris"]] |
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lat: [[52.371807,37.773972,53.11254,48.864716]] |
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long: [[4.896029,-122.431297,6.0989,2.349014]] |
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``` |
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You both can use `append(df)` or `overwrite(df)` since there is no data yet. If we want to add more data, we can use `.append()` again: |
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```python |
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df = pa.Table.from_pylist( |
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[{"city": "Groningen", "lat": 53.21917, "long": 6.56667}], |
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) |
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tbl.append(df) |
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``` |
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When reading the table `tbl.scan().to_arrow()` you can see that `Groningen` is now also part of the table: |
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``` |
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pyarrow.Table |
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city: string |
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lat: double |
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long: double |
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---- |
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city: [["Amsterdam","San Francisco","Drachten","Paris"],["Groningen"]] |
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lat: [[52.371807,37.773972,53.11254,48.864716],[53.21917]] |
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long: [[4.896029,-122.431297,6.0989,2.349014],[6.56667]] |
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``` |
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The nested lists indicate the different Arrow buffers, where the first write results into a buffer, and the second append in a separate buffer. This is expected since it will read two parquet files. |
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To avoid any type errors during writing, you can enforce the PyArrow table types using the Iceberg table schema: |
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```python |
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from pyiceberg.catalog import load_catalog |
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import pyarrow as pa |
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catalog = load_catalog("default") |
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table = catalog.load_table("default.cities") |
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schema = table.schema().as_arrow() |
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df = pa.Table.from_pylist( |
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[{"city": "Groningen", "lat": 53.21917, "long": 6.56667}], schema=schema |
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) |
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table.append(df) |
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``` |
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<!-- prettier-ignore-start --> |
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!!! example "Under development" |
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Writing using PyIceberg is still under development. Support for [partial overwrites](https://github.com/apache/iceberg-python/issues/268) and writing to [partitioned tables](https://github.com/apache/iceberg-python/issues/208) is planned and being worked on. |
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<!-- prettier-ignore-end --> |
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## Inspecting tables |
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To explore the table metadata, tables can be inspected. |
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<!-- prettier-ignore-start --> |
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!!! tip "Time Travel" |
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To inspect a tables's metadata with the time travel feature, call the inspect table method with the `snapshot_id` argument. |
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Time travel is supported on all metadata tables except `snapshots` and `refs`. |
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```python |
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table.inspect.entries(snapshot_id=805611270568163028) |
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``` |
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<!-- prettier-ignore-end --> |
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### Snapshots |
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Inspect the snapshots of the table: |
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```python |
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table.inspect.snapshots() |
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``` |
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``` |
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pyarrow.Table |
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committed_at: timestamp[ms] not null |
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snapshot_id: int64 not null |
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parent_id: int64 |
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operation: string |
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manifest_list: string not null |
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summary: map<string, string> |
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child 0, entries: struct<key: string not null, value: string> not null |
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child 0, key: string not null |
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child 1, value: string |
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---- |
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committed_at: [[2024-03-15 15:01:25.682,2024-03-15 15:01:25.730,2024-03-15 15:01:25.772]] |
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snapshot_id: [[805611270568163028,3679426539959220963,5588071473139865870]] |
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parent_id: [[null,805611270568163028,3679426539959220963]] |
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operation: [["append","overwrite","append"]] |
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manifest_list: [["s3://warehouse/default/table_metadata_snapshots/metadata/snap-805611270568163028-0-43637daf-ea4b-4ceb-b096-a60c25481eb5.avro","s3://warehouse/default/table_metadata_snapshots/metadata/snap-3679426539959220963-0-8be81019-adf1-4bb6-a127-e15217bd50b3.avro","s3://warehouse/default/table_metadata_snapshots/metadata/snap-5588071473139865870-0-1382dd7e-5fbc-4c51-9776-a832d7d0984e.avro"]] |
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summary: [[keys:["added-files-size","added-data-files","added-records","total-data-files","total-delete-files","total-records","total-files-size","total-position-deletes","total-equality-deletes"]values:["5459","1","3","1","0","3","5459","0","0"],keys:["added-files-size","added-data-files","added-records","total-data-files","total-records",...,"total-equality-deletes","total-files-size","deleted-data-files","deleted-records","removed-files-size"]values:["5459","1","3","1","3",...,"0","5459","1","3","5459"],keys:["added-files-size","added-data-files","added-records","total-data-files","total-delete-files","total-records","total-files-size","total-position-deletes","total-equality-deletes"]values:["5459","1","3","2","0","6","10918","0","0"]]] |
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``` |
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### Partitions |
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Inspect the partitions of the table: |
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```python |
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table.inspect.partitions() |
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``` |
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``` |
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pyarrow.Table |
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partition: struct<dt_month: int32, dt_day: date32[day]> not null |
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child 0, dt_month: int32 |
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child 1, dt_day: date32[day] |
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spec_id: int32 not null |
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record_count: int64 not null |
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file_count: int32 not null |
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total_data_file_size_in_bytes: int64 not null |
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position_delete_record_count: int64 not null |
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position_delete_file_count: int32 not null |
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equality_delete_record_count: int64 not null |
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equality_delete_file_count: int32 not null |
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last_updated_at: timestamp[ms] |
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last_updated_snapshot_id: int64 |
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---- |
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partition: [ |
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-- is_valid: all not null |
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-- child 0 type: int32 |
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[null,null,612] |
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-- child 1 type: date32[day] |
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[null,2021-02-01,null]] |
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spec_id: [[2,1,0]] |
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record_count: [[1,1,2]] |
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file_count: [[1,1,2]] |
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total_data_file_size_in_bytes: [[641,641,1260]] |
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position_delete_record_count: [[0,0,0]] |
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position_delete_file_count: [[0,0,0]] |
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equality_delete_record_count: [[0,0,0]] |
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equality_delete_file_count: [[0,0,0]] |
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last_updated_at: [[2024-04-13 18:59:35.981,2024-04-13 18:59:35.465,2024-04-13 18:59:35.003]] |
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``` |
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### Entries |
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To show all the table's current manifest entries for both data and delete files. |
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```python |
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table.inspect.entries() |
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``` |
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``` |
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pyarrow.Table |
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status: int8 not null |
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snapshot_id: int64 not null |
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sequence_number: int64 not null |
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file_sequence_number: int64 not null |
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data_file: struct<content: int8 not null, file_path: string not null, file_format: string not null, partition: struct<> not null, record_count: int64 not null, file_size_in_bytes: int64 not null, column_sizes: map<int32, int64>, value_counts: map<int32, int64>, null_value_counts: map<int32, int64>, nan_value_counts: map<int32, int64>, lower_bounds: map<int32, binary>, upper_bounds: map<int32, binary>, key_metadata: binary, split_offsets: list<item: int64>, equality_ids: list<item: int32>, sort_order_id: int32> not null |
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child 0, content: int8 not null |
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child 1, file_path: string not null |
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child 2, file_format: string not null |
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child 3, partition: struct<> not null |
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child 4, record_count: int64 not null |
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child 5, file_size_in_bytes: int64 not null |
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child 6, column_sizes: map<int32, int64> |
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child 0, entries: struct<key: int32 not null, value: int64> not null |
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child 0, key: int32 not null |
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child 1, value: int64 |
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child 7, value_counts: map<int32, int64> |
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child 0, entries: struct<key: int32 not null, value: int64> not null |
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child 0, key: int32 not null |
|
|
child 1, value: int64 |
|
|
child 8, null_value_counts: map<int32, int64> |
|
|
child 0, entries: struct<key: int32 not null, value: int64> not null |
|
|
child 0, key: int32 not null |
|
|
child 1, value: int64 |
|
|
child 9, nan_value_counts: map<int32, int64> |
|
|
child 0, entries: struct<key: int32 not null, value: int64> not null |
|
|
child 0, key: int32 not null |
|
|
child 1, value: int64 |
|
|
child 10, lower_bounds: map<int32, binary> |
|
|
child 0, entries: struct<key: int32 not null, value: binary> not null |
|
|
child 0, key: int32 not null |
|
|
child 1, value: binary |
|
|
child 11, upper_bounds: map<int32, binary> |
|
|
child 0, entries: struct<key: int32 not null, value: binary> not null |
|
|
child 0, key: int32 not null |
|
|
child 1, value: binary |
|
|
child 12, key_metadata: binary |
|
|
child 13, split_offsets: list<item: int64> |
|
|
child 0, item: int64 |
|
|
child 14, equality_ids: list<item: int32> |
|
|
child 0, item: int32 |
|
|
child 15, sort_order_id: int32 |
|
|
readable_metrics: struct<city: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: string, upper_bound: string> not null, lat: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> not null, long: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> not null> |
|
|
child 0, city: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: string, upper_bound: string> not null |
|
|
child 0, column_size: int64 |
|
|
child 1, value_count: int64 |
|
|
child 2, null_value_count: int64 |
|
|
child 3, nan_value_count: int64 |
|
|
child 4, lower_bound: string |
|
|
child 5, upper_bound: string |
|
|
child 1, lat: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> not null |
|
|
child 0, column_size: int64 |
|
|
child 1, value_count: int64 |
|
|
child 2, null_value_count: int64 |
|
|
child 3, nan_value_count: int64 |
|
|
child 4, lower_bound: double |
|
|
child 5, upper_bound: double |
|
|
child 2, long: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> not null |
|
|
child 0, column_size: int64 |
|
|
child 1, value_count: int64 |
|
|
child 2, null_value_count: int64 |
|
|
child 3, nan_value_count: int64 |
|
|
child 4, lower_bound: double |
|
|
child 5, upper_bound: double |
|
|
---- |
|
|
status: [[1]] |
|
|
snapshot_id: [[6245626162224016531]] |
|
|
sequence_number: [[1]] |
|
|
file_sequence_number: [[1]] |
|
|
data_file: [ |
|
|
-- is_valid: all not null |
|
|
-- child 0 type: int8 |
|
|
[0] |
|
|
-- child 1 type: string |
|
|
["s3://warehouse/default/cities/data/00000-0-80766b66-e558-4150-a5cf-85e4c609b9fe.parquet"] |
|
|
-- child 2 type: string |
|
|
["PARQUET"] |
|
|
-- child 3 type: struct<> |
|
|
-- is_valid: all not null |
|
|
-- child 4 type: int64 |
|
|
[4] |
|
|
-- child 5 type: int64 |
|
|
[1656] |
|
|
-- child 6 type: map<int32, int64> |
|
|
[keys:[1,2,3]values:[140,135,135]] |
|
|
-- child 7 type: map<int32, int64> |
|
|
[keys:[1,2,3]values:[4,4,4]] |
|
|
-- child 8 type: map<int32, int64> |
|
|
[keys:[1,2,3]values:[0,0,0]] |
|
|
-- child 9 type: map<int32, int64> |
|
|
[keys:[]values:[]] |
|
|
-- child 10 type: map<int32, binary> |
|
|
[keys:[1,2,3]values:[416D7374657264616D,8602B68311E34240,3A77BB5E9A9B5EC0]] |
|
|
-- child 11 type: map<int32, binary> |
|
|
[keys:[1,2,3]values:[53616E204672616E636973636F,F5BEF1B5678E4A40,304CA60A46651840]] |
|
|
-- child 12 type: binary |
|
|
[null] |
|
|
-- child 13 type: list<item: int64> |
|
|
[[4]] |
|
|
-- child 14 type: list<item: int32> |
|
|
[null] |
|
|
-- child 15 type: int32 |
|
|
[null]] |
|
|
readable_metrics: [ |
|
|
-- is_valid: all not null |
|
|
-- child 0 type: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: string, upper_bound: string> |
|
|
-- is_valid: all not null |
|
|
-- child 0 type: int64 |
|
|
[140] |
|
|
-- child 1 type: int64 |
|
|
[4] |
|
|
-- child 2 type: int64 |
|
|
[0] |
|
|
-- child 3 type: int64 |
|
|
[null] |
|
|
-- child 4 type: string |
|
|
["Amsterdam"] |
|
|
-- child 5 type: string |
|
|
["San Francisco"] |
|
|
-- child 1 type: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> |
|
|
-- is_valid: all not null |
|
|
-- child 0 type: int64 |
|
|
[135] |
|
|
-- child 1 type: int64 |
|
|
[4] |
|
|
-- child 2 type: int64 |
|
|
[0] |
|
|
-- child 3 type: int64 |
|
|
[null] |
|
|
-- child 4 type: double |
|
|
[37.773972] |
|
|
-- child 5 type: double |
|
|
[53.11254] |
|
|
-- child 2 type: struct<column_size: int64, value_count: int64, null_value_count: int64, nan_value_count: int64, lower_bound: double, upper_bound: double> |
|
|
-- is_valid: all not null |
|
|
-- child 0 type: int64 |
|
|
[135] |
|
|
-- child 1 type: int64 |
|
|
[4] |
|
|
-- child 2 type: int64 |
|
|
[0] |
|
|
-- child 3 type: int64 |
|
|
[null] |
|
|
-- child 4 type: double |
|
|
[-122.431297] |
|
|
-- child 5 type: double |
|
|
[6.0989]] |
|
|
``` |
|
|
|
|
|
### References |
|
|
|
|
|
To show a table's known snapshot references: |
|
|
|
|
|
```python |
|
|
table.inspect.refs() |
|
|
``` |
|
|
|
|
|
``` |
|
|
pyarrow.Table |
|
|
name: string not null |
|
|
type: string not null |
|
|
snapshot_id: int64 not null |
|
|
max_reference_age_in_ms: int64 |
|
|
min_snapshots_to_keep: int32 |
|
|
max_snapshot_age_in_ms: int64 |
|
|
---- |
|
|
name: [["main","testTag"]] |
|
|
type: [["BRANCH","TAG"]] |
|
|
snapshot_id: [[2278002651076891950,2278002651076891950]] |
|
|
max_reference_age_in_ms: [[null,604800000]] |
|
|
min_snapshots_to_keep: [[null,10]] |
|
|
max_snapshot_age_in_ms: [[null,604800000]] |
|
|
``` |
|
|
|
|
|
### Manifests |
|
|
|
|
|
To show a table's current file manifests: |
|
|
|
|
|
```python |
|
|
table.inspect.manifests() |
|
|
``` |
|
|
|
|
|
``` |
|
|
pyarrow.Table |
|
|
content: int8 not null |
|
|
path: string not null |
|
|
length: int64 not null |
|
|
partition_spec_id: int32 not null |
|
|
added_snapshot_id: int64 not null |
|
|
added_data_files_count: int32 not null |
|
|
existing_data_files_count: int32 not null |
|
|
deleted_data_files_count: int32 not null |
|
|
added_delete_files_count: int32 not null |
|
|
existing_delete_files_count: int32 not null |
|
|
deleted_delete_files_count: int32 not null |
|
|
partition_summaries: list<item: struct<contains_null: bool not null, contains_nan: bool, lower_bound: string, upper_bound: string>> not null |
|
|
child 0, item: struct<contains_null: bool not null, contains_nan: bool, lower_bound: string, upper_bound: string> |
|
|
child 0, contains_null: bool not null |
|
|
child 1, contains_nan: bool |
|
|
child 2, lower_bound: string |
|
|
child 3, upper_bound: string |
|
|
---- |
|
|
content: [[0]] |
|
|
path: [["s3://warehouse/default/table_metadata_manifests/metadata/3bf5b4c6-a7a4-4b43-a6ce-ca2b4887945a-m0.avro"]] |
|
|
length: [[6886]] |
|
|
partition_spec_id: [[0]] |
|
|
added_snapshot_id: [[3815834705531553721]] |
|
|
added_data_files_count: [[1]] |
|
|
existing_data_files_count: [[0]] |
|
|
deleted_data_files_count: [[0]] |
|
|
added_delete_files_count: [[0]] |
|
|
existing_delete_files_count: [[0]] |
|
|
deleted_delete_files_count: [[0]] |
|
|
partition_summaries: [[ -- is_valid: all not null |
|
|
-- child 0 type: bool |
|
|
[false] |
|
|
-- child 1 type: bool |
|
|
[false] |
|
|
-- child 2 type: string |
|
|
["test"] |
|
|
-- child 3 type: string |
|
|
["test"]]] |
|
|
``` |
|
|
|
|
|
## Add Files |
|
|
|
|
|
Expert Iceberg users may choose to commit existing parquet files to the Iceberg table as data files, without rewriting them. |
|
|
|
|
|
``` |
|
|
# Given that these parquet files have schema consistent with the Iceberg table |
|
|
|
|
|
file_paths = [ |
|
|
"s3a://warehouse/default/existing-1.parquet", |
|
|
"s3a://warehouse/default/existing-2.parquet", |
|
|
] |
|
|
|
|
|
# They can be added to the table without rewriting them |
|
|
|
|
|
tbl.add_files(file_paths=file_paths) |
|
|
|
|
|
# A new snapshot is committed to the table with manifests pointing to the existing parquet files |
|
|
``` |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Name Mapping" |
|
|
Because `add_files` uses existing files without writing new parquet files that are aware of the Iceberg's schema, it requires the Iceberg's table to have a [Name Mapping](https://iceberg.apache.org/spec/?h=name+mapping#name-mapping-serialization) (The Name mapping maps the field names within the parquet files to the Iceberg field IDs). Hence, `add_files` requires that there are no field IDs in the parquet file's metadata, and creates a new Name Mapping based on the table's current schema if the table doesn't already have one. |
|
|
|
|
|
!!! note "Partitions" |
|
|
`add_files` only requires the client to read the existing parquet files' metadata footer to infer the partition value of each file. This implementation also supports adding files to Iceberg tables with partition transforms like `MonthTransform`, and `TruncateTransform` which preserve the order of the values after the transformation (Any Transform that has the `preserves_order` property set to True is supported). Please note that if the column statistics of the `PartitionField`'s source column are not present in the parquet metadata, the partition value is inferred as `None`. |
|
|
|
|
|
!!! warning "Maintenance Operations" |
|
|
Because `add_files` commits the existing parquet files to the Iceberg Table as any other data file, destructive maintenance operations like expiring snapshots will remove them. |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
## Schema evolution |
|
|
|
|
|
PyIceberg supports full schema evolution through the Python API. It takes care of setting the field-IDs and makes sure that only non-breaking changes are done (can be overriden). |
|
|
|
|
|
In the examples below, the `.update_schema()` is called from the table itself. |
|
|
|
|
|
```python |
|
|
with table.update_schema() as update: |
|
|
update.add_column("some_field", IntegerType(), "doc") |
|
|
``` |
|
|
|
|
|
You can also initiate a transaction if you want to make more changes than just evolving the schema: |
|
|
|
|
|
```python |
|
|
with table.transaction() as transaction: |
|
|
with transaction.update_schema() as update_schema: |
|
|
update.add_column("some_other_field", IntegerType(), "doc") |
|
|
# ... Update properties etc |
|
|
``` |
|
|
|
|
|
### Union by Name |
|
|
|
|
|
Using `.union_by_name()` you can merge another schema into an existing schema without having to worry about field-IDs: |
|
|
|
|
|
```python |
|
|
from pyiceberg.catalog import load_catalog |
|
|
from pyiceberg.schema import Schema |
|
|
from pyiceberg.types import NestedField, StringType, DoubleType, LongType |
|
|
|
|
|
catalog = load_catalog() |
|
|
|
|
|
schema = Schema( |
|
|
NestedField(1, "city", StringType(), required=False), |
|
|
NestedField(2, "lat", DoubleType(), required=False), |
|
|
NestedField(3, "long", DoubleType(), required=False), |
|
|
) |
|
|
|
|
|
table = catalog.create_table("default.locations", schema) |
|
|
|
|
|
new_schema = Schema( |
|
|
NestedField(1, "city", StringType(), required=False), |
|
|
NestedField(2, "lat", DoubleType(), required=False), |
|
|
NestedField(3, "long", DoubleType(), required=False), |
|
|
NestedField(10, "population", LongType(), required=False), |
|
|
) |
|
|
|
|
|
with table.update_schema() as update: |
|
|
update.union_by_name(new_schema) |
|
|
``` |
|
|
|
|
|
Now the table has the union of the two schemas `print(table.schema())`: |
|
|
|
|
|
``` |
|
|
table { |
|
|
1: city: optional string |
|
|
2: lat: optional double |
|
|
3: long: optional double |
|
|
4: population: optional long |
|
|
} |
|
|
``` |
|
|
|
|
|
### Add column |
|
|
|
|
|
Using `add_column` you can add a column, without having to worry about the field-id: |
|
|
|
|
|
```python |
|
|
with table.update_schema() as update: |
|
|
update.add_column("retries", IntegerType(), "Number of retries to place the bid") |
|
|
# In a struct |
|
|
update.add_column("details.confirmed_by", StringType(), "Name of the exchange") |
|
|
``` |
|
|
|
|
|
### Rename column |
|
|
|
|
|
Renaming a field in an Iceberg table is simple: |
|
|
|
|
|
```python |
|
|
with table.update_schema() as update: |
|
|
update.rename_column("retries", "num_retries") |
|
|
# This will rename `confirmed_by` to `exchange` |
|
|
update.rename_column("properties.confirmed_by", "exchange") |
|
|
``` |
|
|
|
|
|
### Move column |
|
|
|
|
|
Move a field inside of struct: |
|
|
|
|
|
```python |
|
|
with table.update_schema() as update: |
|
|
update.move_first("symbol") |
|
|
update.move_after("bid", "ask") |
|
|
# This will move `confirmed_by` before `exchange` |
|
|
update.move_before("details.created_by", "details.exchange") |
|
|
``` |
|
|
|
|
|
### Update column |
|
|
|
|
|
Update a fields' type, description or required. |
|
|
|
|
|
```python |
|
|
with table.update_schema() as update: |
|
|
# Promote a float to a double |
|
|
update.update_column("bid", field_type=DoubleType()) |
|
|
# Make a field optional |
|
|
update.update_column("symbol", required=False) |
|
|
# Update the documentation |
|
|
update.update_column("symbol", doc="Name of the share on the exchange") |
|
|
``` |
|
|
|
|
|
Be careful, some operations are not compatible, but can still be done at your own risk by setting `allow_incompatible_changes`: |
|
|
|
|
|
```python |
|
|
with table.update_schema(allow_incompatible_changes=True) as update: |
|
|
# Incompatible change, cannot require an optional field |
|
|
update.update_column("symbol", required=True) |
|
|
``` |
|
|
|
|
|
### Delete column |
|
|
|
|
|
Delete a field, careful this is a incompatible change (readers/writers might expect this field): |
|
|
|
|
|
```python |
|
|
with table.update_schema(allow_incompatible_changes=True) as update: |
|
|
update.delete_column("some_field") |
|
|
``` |
|
|
|
|
|
## Partition evolution |
|
|
|
|
|
PyIceberg supports partition evolution. See the [partition evolution](https://iceberg.apache.org/spec/#partition-evolution) |
|
|
for more details. |
|
|
|
|
|
The API to use when evolving partitions is the `update_spec` API on the table. |
|
|
|
|
|
```python |
|
|
with table.update_spec() as update: |
|
|
update.add_field("id", BucketTransform(16), "bucketed_id") |
|
|
update.add_field("event_ts", DayTransform(), "day_ts") |
|
|
``` |
|
|
|
|
|
Updating the partition spec can also be done as part of a transaction with other operations. |
|
|
|
|
|
```python |
|
|
with table.transaction() as transaction: |
|
|
with transaction.update_spec() as update_spec: |
|
|
update_spec.add_field("id", BucketTransform(16), "bucketed_id") |
|
|
update_spec.add_field("event_ts", DayTransform(), "day_ts") |
|
|
# ... Update properties etc |
|
|
``` |
|
|
|
|
|
### Add fields |
|
|
|
|
|
New partition fields can be added via the `add_field` API which takes in the field name to partition on, |
|
|
the partition transform, and an optional partition name. If the partition name is not specified, |
|
|
one will be created. |
|
|
|
|
|
```python |
|
|
with table.update_spec() as update: |
|
|
update.add_field("id", BucketTransform(16), "bucketed_id") |
|
|
update.add_field("event_ts", DayTransform(), "day_ts") |
|
|
# identity is a shortcut API for adding an IdentityTransform |
|
|
update.identity("some_field") |
|
|
``` |
|
|
|
|
|
### Remove fields |
|
|
|
|
|
Partition fields can also be removed via the `remove_field` API if it no longer makes sense to partition on those fields. |
|
|
|
|
|
```python |
|
|
with table.update_spec() as update:some_partition_name |
|
|
# Remove the partition field with the name |
|
|
update.remove_field("some_partition_name") |
|
|
``` |
|
|
|
|
|
### Rename fields |
|
|
|
|
|
Partition fields can also be renamed via the `rename_field` API. |
|
|
|
|
|
```python |
|
|
with table.update_spec() as update: |
|
|
# Rename the partition field with the name bucketed_id to sharded_id |
|
|
update.rename_field("bucketed_id", "sharded_id") |
|
|
``` |
|
|
|
|
|
## Table properties |
|
|
|
|
|
Set and remove properties through the `Transaction` API: |
|
|
|
|
|
```python |
|
|
with table.transaction() as transaction: |
|
|
transaction.set_properties(abc="def") |
|
|
|
|
|
assert table.properties == {"abc": "def"} |
|
|
|
|
|
with table.transaction() as transaction: |
|
|
transaction.remove_properties("abc") |
|
|
|
|
|
assert table.properties == {} |
|
|
``` |
|
|
|
|
|
Or, without context manager: |
|
|
|
|
|
```python |
|
|
table = table.transaction().set_properties(abc="def").commit_transaction() |
|
|
|
|
|
assert table.properties == {"abc": "def"} |
|
|
|
|
|
table = table.transaction().remove_properties("abc").commit_transaction() |
|
|
|
|
|
assert table.properties == {} |
|
|
``` |
|
|
|
|
|
## Snapshot properties |
|
|
|
|
|
Optionally, Snapshot properties can be set while writing to a table using `append` or `overwrite` API: |
|
|
|
|
|
```python |
|
|
tbl.append(df, snapshot_properties={"abc": "def"}) |
|
|
|
|
|
# or |
|
|
|
|
|
tbl.overwrite(df, snapshot_properties={"abc": "def"}) |
|
|
|
|
|
assert tbl.metadata.snapshots[-1].summary["abc"] == "def" |
|
|
``` |
|
|
|
|
|
## Query the data |
|
|
|
|
|
To query a table, a table scan is needed. A table scan accepts a filter, columns, optionally a limit and a snapshot ID: |
|
|
|
|
|
```python |
|
|
from pyiceberg.catalog import load_catalog |
|
|
from pyiceberg.expressions import GreaterThanOrEqual |
|
|
|
|
|
catalog = load_catalog("default") |
|
|
table = catalog.load_table("nyc.taxis") |
|
|
|
|
|
scan = table.scan( |
|
|
row_filter=GreaterThanOrEqual("trip_distance", 10.0), |
|
|
selected_fields=("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime"), |
|
|
limit=100, |
|
|
) |
|
|
|
|
|
# Or filter using a string predicate |
|
|
scan = table.scan( |
|
|
row_filter="trip_distance > 10.0", |
|
|
) |
|
|
|
|
|
[task.file.file_path for task in scan.plan_files()] |
|
|
``` |
|
|
|
|
|
The low level API `plan_files` methods returns a set of tasks that provide the files that might contain matching rows: |
|
|
|
|
|
```json |
|
|
[ |
|
|
"s3://warehouse/wh/nyc/taxis/data/00003-4-42464649-92dd-41ad-b83b-dea1a2fe4b58-00001.parquet" |
|
|
] |
|
|
``` |
|
|
|
|
|
In this case it is up to the engine itself to filter the file itself. Below, `to_arrow()` and `to_duckdb()` that already do this for you. |
|
|
|
|
|
### Apache Arrow |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Requirements" |
|
|
This requires [`pyarrow` to be installed](index.md). |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
Using PyIceberg it is filter out data from a huge table and pull it into a PyArrow table: |
|
|
|
|
|
```python |
|
|
table.scan( |
|
|
row_filter=GreaterThanOrEqual("trip_distance", 10.0), |
|
|
selected_fields=("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime"), |
|
|
).to_arrow() |
|
|
``` |
|
|
|
|
|
This will return a PyArrow table: |
|
|
|
|
|
``` |
|
|
pyarrow.Table |
|
|
VendorID: int64 |
|
|
tpep_pickup_datetime: timestamp[us, tz=+00:00] |
|
|
tpep_dropoff_datetime: timestamp[us, tz=+00:00] |
|
|
---- |
|
|
VendorID: [[2,1,2,1,1,...,2,2,2,2,2],[2,1,1,1,2,...,1,1,2,1,2],...,[2,2,2,2,2,...,2,6,6,2,2],[2,2,2,2,2,...,2,2,2,2,2]] |
|
|
tpep_pickup_datetime: [[2021-04-01 00:28:05.000000,...,2021-04-30 23:44:25.000000]] |
|
|
tpep_dropoff_datetime: [[2021-04-01 00:47:59.000000,...,2021-05-01 00:14:47.000000]] |
|
|
``` |
|
|
|
|
|
This will only pull in the files that that might contain matching rows. |
|
|
|
|
|
### Pandas |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Requirements" |
|
|
This requires [`pandas` to be installed](index.md). |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
PyIceberg makes it easy to filter out data from a huge table and pull it into a Pandas dataframe locally. This will only fetch the relevant Parquet files for the query and apply the filter. This will reduce IO and therefore improve performance and reduce cost. |
|
|
|
|
|
```python |
|
|
table.scan( |
|
|
row_filter="trip_distance >= 10.0", |
|
|
selected_fields=("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime"), |
|
|
).to_pandas() |
|
|
``` |
|
|
|
|
|
This will return a Pandas dataframe: |
|
|
|
|
|
``` |
|
|
VendorID tpep_pickup_datetime tpep_dropoff_datetime |
|
|
0 2 2021-04-01 00:28:05+00:00 2021-04-01 00:47:59+00:00 |
|
|
1 1 2021-04-01 00:39:01+00:00 2021-04-01 00:57:39+00:00 |
|
|
2 2 2021-04-01 00:14:42+00:00 2021-04-01 00:42:59+00:00 |
|
|
3 1 2021-04-01 00:17:17+00:00 2021-04-01 00:43:38+00:00 |
|
|
4 1 2021-04-01 00:24:04+00:00 2021-04-01 00:56:20+00:00 |
|
|
... ... ... ... |
|
|
116976 2 2021-04-30 23:56:18+00:00 2021-05-01 00:29:13+00:00 |
|
|
116977 2 2021-04-30 23:07:41+00:00 2021-04-30 23:37:18+00:00 |
|
|
116978 2 2021-04-30 23:38:28+00:00 2021-05-01 00:12:04+00:00 |
|
|
116979 2 2021-04-30 23:33:00+00:00 2021-04-30 23:59:00+00:00 |
|
|
116980 2 2021-04-30 23:44:25+00:00 2021-05-01 00:14:47+00:00 |
|
|
|
|
|
[116981 rows x 3 columns] |
|
|
``` |
|
|
|
|
|
It is recommended to use Pandas 2 or later, because it stores the data in an [Apache Arrow backend](https://datapythonista.me/blog/pandas-20-and-the-arrow-revolution-part-i) which avoids copies of data. |
|
|
|
|
|
### DuckDB |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Requirements" |
|
|
This requires [DuckDB to be installed](index.md). |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
A table scan can also be converted into a in-memory DuckDB table: |
|
|
|
|
|
```python |
|
|
con = table.scan( |
|
|
row_filter=GreaterThanOrEqual("trip_distance", 10.0), |
|
|
selected_fields=("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime"), |
|
|
).to_duckdb(table_name="distant_taxi_trips") |
|
|
``` |
|
|
|
|
|
Using the cursor that we can run queries on the DuckDB table: |
|
|
|
|
|
```python |
|
|
print( |
|
|
con.execute( |
|
|
"SELECT tpep_dropoff_datetime - tpep_pickup_datetime AS duration FROM distant_taxi_trips LIMIT 4" |
|
|
).fetchall() |
|
|
) |
|
|
[ |
|
|
(datetime.timedelta(seconds=1194),), |
|
|
(datetime.timedelta(seconds=1118),), |
|
|
(datetime.timedelta(seconds=1697),), |
|
|
(datetime.timedelta(seconds=1581),), |
|
|
] |
|
|
``` |
|
|
|
|
|
### Ray |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Requirements" |
|
|
This requires [Ray to be installed](index.md). |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
A table scan can also be converted into a Ray dataset: |
|
|
|
|
|
```python |
|
|
ray_dataset = table.scan( |
|
|
row_filter=GreaterThanOrEqual("trip_distance", 10.0), |
|
|
selected_fields=("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime"), |
|
|
).to_ray() |
|
|
``` |
|
|
|
|
|
This will return a Ray dataset: |
|
|
|
|
|
``` |
|
|
Dataset( |
|
|
num_blocks=1, |
|
|
num_rows=1168798, |
|
|
schema={ |
|
|
VendorID: int64, |
|
|
tpep_pickup_datetime: timestamp[us, tz=UTC], |
|
|
tpep_dropoff_datetime: timestamp[us, tz=UTC] |
|
|
} |
|
|
) |
|
|
``` |
|
|
|
|
|
Using [Ray Dataset API](https://docs.ray.io/en/latest/data/api/dataset.html) to interact with the dataset: |
|
|
|
|
|
```python |
|
|
print(ray_dataset.take(2)) |
|
|
[ |
|
|
{ |
|
|
"VendorID": 2, |
|
|
"tpep_pickup_datetime": datetime.datetime(2008, 12, 31, 23, 23, 50), |
|
|
"tpep_dropoff_datetime": datetime.datetime(2009, 1, 1, 0, 34, 31), |
|
|
}, |
|
|
{ |
|
|
"VendorID": 2, |
|
|
"tpep_pickup_datetime": datetime.datetime(2008, 12, 31, 23, 5, 3), |
|
|
"tpep_dropoff_datetime": datetime.datetime(2009, 1, 1, 16, 10, 18), |
|
|
}, |
|
|
] |
|
|
``` |
|
|
|
|
|
### Daft |
|
|
|
|
|
PyIceberg interfaces closely with Daft Dataframes (see also: [Daft integration with Iceberg](https://www.getdaft.io/projects/docs/en/latest/user_guide/integrations/iceberg.html)) which provides a full lazily optimized query engine interface on top of PyIceberg tables. |
|
|
|
|
|
<!-- prettier-ignore-start --> |
|
|
|
|
|
!!! note "Requirements" |
|
|
This requires [Daft to be installed](index.md). |
|
|
|
|
|
<!-- prettier-ignore-end --> |
|
|
|
|
|
A table can be read easily into a Daft Dataframe: |
|
|
|
|
|
```python |
|
|
df = table.to_daft() # equivalent to `daft.read_iceberg(table)` |
|
|
df = df.where(df["trip_distance"] >= 10.0) |
|
|
df = df.select("VendorID", "tpep_pickup_datetime", "tpep_dropoff_datetime") |
|
|
``` |
|
|
|
|
|
This returns a Daft Dataframe which is lazily materialized. Printing `df` will display the schema: |
|
|
|
|
|
``` |
|
|
╭──────────┬───────────────────────────────┬───────────────────────────────╮ |
|
|
│ VendorID ┆ tpep_pickup_datetime ┆ tpep_dropoff_datetime │ |
|
|
│ --- ┆ --- ┆ --- │ |
|
|
│ Int64 ┆ Timestamp(Microseconds, None) ┆ Timestamp(Microseconds, None) │ |
|
|
╰──────────┴───────────────────────────────┴───────────────────────────────╯ |
|
|
|
|
|
(No data to display: Dataframe not materialized) |
|
|
``` |
|
|
|
|
|
We can execute the Dataframe to preview the first few rows of the query with `df.show()`. |
|
|
|
|
|
This is correctly optimized to take advantage of Iceberg features such as hidden partitioning and file-level statistics for efficient reads. |
|
|
|
|
|
```python |
|
|
df.show(2) |
|
|
``` |
|
|
|
|
|
``` |
|
|
╭──────────┬───────────────────────────────┬───────────────────────────────╮ |
|
|
│ VendorID ┆ tpep_pickup_datetime ┆ tpep_dropoff_datetime │ |
|
|
│ --- ┆ --- ┆ --- │ |
|
|
│ Int64 ┆ Timestamp(Microseconds, None) ┆ Timestamp(Microseconds, None) │ |
|
|
╞══════════╪═══════════════════════════════╪═══════════════════════════════╡ |
|
|
│ 2 ┆ 2008-12-31T23:23:50.000000 ┆ 2009-01-01T00:34:31.000000 │ |
|
|
├╌╌╌╌╌╌╌╌╌╌┼╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌┼╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌╌┤ |
|
|
│ 2 ┆ 2008-12-31T23:05:03.000000 ┆ 2009-01-01T16:10:18.000000 │ |
|
|
╰──────────┴───────────────────────────────┴───────────────────────────────╯ |
|
|
|
|
|
(Showing first 2 rows) |
|
|
``` |
|
|
|