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} } }); } } else { <BUG>if (n <= m) { for (int i = 0; i < n; i++) { for (int j = 0; j < m; j++) {</BUG> result[i][j] = zipFunction.apply(a[i][j], b[i][j], c[i][j]); }
return new BooleanMatrix(c);
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} public AsyncExecutor(int maxConcurrentThreadNumber, long keepAliveTime, TimeUnit unit) { this.maxConcurrentThreadNumber = maxConcurrentThreadNumber; this.keepAliveTime = keepAliveTime; this.unit = unit; <BUG>} public AsyncExecutor(final ExecutorService executorService) { this(8, 300, TimeUnit.SECONDS); this.executorS...
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results.add(execute(cmd)); } return results; } public <T> CompletableFuture<T> execute(final Callable<T> command) { <BUG>final CompletableFuture<T> future = new CompletableFuture<T>(this, command); getExecutorService().execute(future);</BUG> return future; } public <T> List<CompletableFuture<T>> execute(final Callable<...
final CompletableFuture<T> future = new CompletableFuture<>(this, command); getExecutorService().execute(future);
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public void visit(Tree.ClassOrInterface decl) { if(hasClassErrors(decl)) return; boolean annots = gen.checkCompilerAnnotations(decl); if (Decl.withinClassOrInterface(decl)) { <BUG>if (Decl.withinInterface(decl) && !Decl.isToplevel(decl)) {</BUG> classBuilder.getCompanionBuilder((Interface)decl.getDeclarationModel().ge...
if (Decl.withinInterface(decl)) {
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if (result.getCause() == null) { PetrifyTransformationResult returnValue = result.getReturnValue(); Result<? extends ExternalProcessResult> petrifyResult = returnValue.getPetrifyResult(); ExternalProcessResult petrifyReturnValue = petrifyResult.getReturnValue(); JOptionPane.showMessageDialog(mainWindow, <BUG>"Petrify o...
"Petrify output: \n\n" + petrifyReturnValue.getErrorsHeadAndTail(),
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} else if (result.getOutcome() != Outcome.CANCELLED) { MainWindow mainWindow = framework.getMainWindow(); if (result.getCause() == null) { Result<? extends ExternalProcessResult> writeSgResult = result.getReturnValue().getResult(); JOptionPane.showMessageDialog(mainWindow, <BUG>"Petrify output: \n\n" + new String(write...
"Petrify output:\n" + writeSgResult.getReturnValue().getErrorsHeadAndTail(),
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String message; if (result.getCause() != null) { message = result.getCause().getMessage(); result.getCause().printStackTrace(); } else { <BUG>message = "Pcomp errors: \n" + new String(result.getReturnValue().getErrors()); </BUG> } JOptionPane.showMessageDialog(mainWindow, message, "Parallel composition failed", JOption...
message = "Pcomp errors:\n" + result.getReturnValue().getErrorsHeadAndTail();
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public void run() { final Framework framework = Framework.getInstance(); Path<String> path = we.getWorkspacePath(); String fileName = FileUtils.getFileNameWithoutExtension(new File(path.getNode())); StgModel model = getResolvedStg(); <BUG>if (model == null) { JOptionPane.showMessageDialog(framework.getMainWindow(), "MP...
String errorMessage = result.getReturnValue().getErrorsHeadAndTail(); "MPSat output: \n" + errorMessage, "Conflict resolution failed", JOptionPane.WARNING_MESSAGE);
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return; } else { if (drawAstgResult.getCause() != null) { throw new SerialisationException(drawAstgResult.getCause()); } else { <BUG>throw new SerialisationException("Petrify failed with return code " + drawAstgResult.getReturnValue().getReturnCode() + "\n\n" + new String(drawAstgResult.getReturnValue().getErrors()) + ...
if (result.getCause() != null) { throw new SerialisationException(result.getCause()); throw new SerialisationException("Could not export model as .g");
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} else if (result.getOutcome() != Outcome.CANCELLED) { MainWindow mainWindow = framework.getMainWindow(); if (result.getCause() == null) { Result<? extends ExternalProcessResult> petrifyResult = result.getReturnValue().getResult(); JOptionPane.showMessageDialog(mainWindow, <BUG>"Petrify output: \n\n" + new String(petri...
"Petrify output:\n" + petrifyResult.getReturnValue().getErrorsHeadAndTail(),
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Result<? extends ExternalProcessResult> result = task.run(mon); if (result.getOutcome() != Outcome.FINISHED) { return result; } ExternalProcessResult retVal = result.getReturnValue(); <BUG>ExternalProcessResult finalResult = new ExternalProcessResult(retVal.getReturnCode(), retVal.getOutput(), retVal.getErrors(), null)...
ExternalProcessResult finalResult = new ExternalProcessResult( if (retVal.getReturnCode() == 0) {
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Result<? extends ExternalProcessResult> mpsatResult = framework.getTaskManager().execute( mpsatTask, "Running deadlock checking [MPSat]", mon); if (mpsatResult.getOutcome() != Outcome.FINISHED) { if (mpsatResult.getOutcome() == Outcome.CANCELLED) { return new Result<MpsatChainResult>(Outcome.CANCELLED); <BUG>} return n...
String errorMessage = mpsatResult.getReturnValue().getErrorsHeadAndTail(); new MpsatChainResult(exportResult, null, punfResult, mpsatResult, settings, errorMessage));
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Result<? extends ExternalProcessResult> result = task.run(mon); if (result.getOutcome() != Outcome.FINISHED) { return result; } ExternalProcessResult retVal = result.getReturnValue(); <BUG>ExternalProcessResult finalResult = new ExternalProcessResult(retVal.getReturnCode(), retVal.getOutput(), retVal.getErrors(), null)...
ExternalProcessResult finalResult = new ExternalProcessResult( if (retVal.getReturnCode() == 0) {
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Result<? extends ExternalProcessResult> res = task.run(monitor); if (res.getOutcome() != Outcome.FINISHED) { return res; } ExternalProcessResult retVal = res.getReturnValue(); <BUG>ExternalProcessResult result = new ExternalProcessResult(retVal.getReturnCode(), retVal.getOutput(), retVal.getErrors()); if (retVal.getRet...
ExternalProcessResult result = new ExternalProcessResult( if (retVal.getReturnCode() < 2) {
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Result<? extends ExternalProcessResult> mpsatResult = framework.getTaskManager().execute( mpsatTask, "Running deadlock checking [MPSat]", mon); if (mpsatResult.getOutcome() != Outcome.FINISHED) { if (mpsatResult.getOutcome() == Outcome.CANCELLED) { return new Result<MpsatChainResult>(Outcome.CANCELLED); <BUG>} return n...
String errorMessage = mpsatResult.getReturnValue().getErrorsHeadAndTail(); new MpsatChainResult(exportResult, null, punfResult, mpsatResult, settings, errorMessage));
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public static final String DELETE_ACTION_HISTORY_RESULT; public static final String DELETE_ACTION_PLUGIN; public static final String DELETE_ALERT; public static final String DELETE_ALERT_CTIME; public static final String DELETE_ALERT_LIFECYCLE; <BUG>public static final String DELETE_ALERT_SEVERITY; public static final ...
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public static final String INSERT_ACTION_PLUGIN; public static final String INSERT_ACTION_PLUGIN_DEFAULT_PROPERTIES; public static final String INSERT_ALERT; public static final String INSERT_ALERT_CTIME; public static final String INSERT_ALERT_LIFECYCLE; <BUG>public static final String INSERT_ALERT_SEVERITY; public st...
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public static final String SELECT_ALERT_CTIME_START; public static final String SELECT_ALERT_CTIME_START_END; public static final String SELECT_ALERT_LIFECYCLE_END; public static final String SELECT_ALERT_LIFECYCLE_START; public static final String SELECT_ALERT_LIFECYCLE_START_END; <BUG>public static final String SELEC...
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DELETE_ALERT = "DELETE FROM " + keyspace + ".alerts " + "WHERE tenantId = ? AND alertId = ? "; DELETE_ALERT_CTIME = "DELETE FROM " + keyspace + ".alerts_ctimes " + "WHERE tenantId = ? AND ctime = ? AND alertId = ? "; DELETE_ALERT_LIFECYCLE = "DELETE FROM " + keyspace + ".alerts_lifecycle " + "WHERE tenantId = ? AND sta...
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INSERT_ALERT = "INSERT INTO " + keyspace + ".alerts " + "(tenantId, alertId, payload) VALUES (?, ?, ?) "; INSERT_ALERT_CTIME = "INSERT INTO " + keyspace + ".alerts_ctimes " + "(tenantId, alertId, ctime) VALUES (?, ?, ?) "; INSERT_ALERT_LIFECYCLE = "INSERT INTO " + keyspace + ".alerts_lifecycle " + "(tenantId, alertId, ...
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+ "WHERE tenantId = ? AND status = ? AND stime <= ? "; SELECT_ALERT_LIFECYCLE_START = "SELECT alertId FROM " + keyspace + ".alerts_lifecycle " + "WHERE tenantId = ? AND status = ? AND stime >= ? "; SELECT_ALERT_LIFECYCLE_START_END = "SELECT alertId FROM " + keyspace + ".alerts_lifecycle " + "WHERE tenantId = ? AND stat...
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import java.util.HashSet; import java.util.Iterator; import java.util.List; import java.util.Map; import java.util.Set; <BUG>import java.util.stream.Collectors; import javax.ejb.EJB;</BUG> import javax.ejb.Local; import javax.ejb.Stateless; import javax.ejb.TransactionAttribute;
import javax.annotation.PostConstruct; import javax.ejb.EJB;
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import org.hawkular.alerts.api.model.trigger.Trigger; import org.hawkular.alerts.api.services.ActionsService; import org.hawkular.alerts.api.services.AlertsCriteria; import org.hawkular.alerts.api.services.AlertsService; import org.hawkular.alerts.api.services.DefinitionsService; <BUG>import org.hawkular.alerts.api.ser...
import org.hawkular.alerts.api.services.PropertiesService; import org.hawkular.alerts.engine.impl.IncomingDataManagerImpl.IncomingData;
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import com.datastax.driver.core.Session; import com.google.common.util.concurrent.Futures; @Local(AlertsService.class) @Stateless @TransactionAttribute(value = TransactionAttributeType.NOT_SUPPORTED) <BUG>public class CassAlertsServiceImpl implements AlertsService { private final MsgLogger msgLog = MsgLogger.LOGGER; pr...
private static final String CRITERIA_NO_QUERY_SIZE = "hawkular-alerts.criteria-no-query-size"; private static final String CRITERIA_NO_QUERY_SIZE_ENV = "CRITERIA_NO_QUERY_SIZE"; private static final String CRITERIA_NO_QUERY_SIZE_DEFAULT = "200"; private int criteriaNoQuerySize;
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log.debug("Adding " + alerts.size() + " alerts"); } PreparedStatement insertAlert = CassStatement.get(session, CassStatement.INSERT_ALERT); PreparedStatement insertAlertTrigger = CassStatement.get(session, CassStatement.INSERT_ALERT_TRIGGER); PreparedStatement insertAlertCtime = CassStatement.get(session, CassStatement...
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futures.add(session.executeAsync(insertAlertTrigger.bind(a.getTenantId(), a.getAlertId(), a.getTriggerId()))); futures.add(session.executeAsync(insertAlertCtime.bind(a.getTenantId(), a.getAlertId(), a.getCtime()))); <BUG>futures.add(session.executeAsync(insertAlertStatus.bind(a.getTenantId(), a.getAlertId(), a.getStatu...
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for (Row row : rsAlerts) { String payload = row.getString("payload"); Alert alert = JsonUtil.fromJson(payload, Alert.class, thin); alerts.add(alert); } <BUG>} } catch (Exception e) { msgLog.errorDatabaseException(e.getMessage()); throw e; } return preparePage(alerts, pager);</BUG> }
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for (Alert a : alertsToDelete) { String id = a.getAlertId(); List<ResultSetFuture> futures = new ArrayList<>(); futures.add(session.executeAsync(deleteAlert.bind(tenantId, id))); futures.add(session.executeAsync(deleteAlertCtime.bind(tenantId, a.getCtime(), id))); <BUG>futures.add(session.executeAsync(deleteAlertSeveri...
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private Alert updateAlertStatus(Alert alert) throws Exception { if (alert == null || alert.getAlertId() == null || alert.getAlertId().isEmpty()) { throw new IllegalArgumentException("AlertId must be not null"); } try { <BUG>PreparedStatement deleteAlertStatus = CassStatement.get(session, CassStatement.DELETE_ALERT_STAT...
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PreparedStatement insertAlertLifecycle = CassStatement.get(session, CassStatement.INSERT_ALERT_LIFECYCLE); PreparedStatement updateAlert = CassStatement.get(session, CassStatement.UPDATE_ALERT); List<ResultSetFuture> futures = new ArrayList<>(); <BUG>for (Status statusToDelete : EnumSet.complementOf(EnumSet.of(alert.ge...
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String category = null; Collection<String> categories = null; String triggerId = null; Collection<String> triggerIds = null; Map<String, String> tags = null; <BUG>boolean thin = false; public EventsCriteria() {</BUG> super(); } public Long getStartTime() {
Integer criteriaNoQuerySize = null; public EventsCriteria() {
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} @Override public String toString() { return "EventsCriteria [startTime=" + startTime + ", endTime=" + endTime + ", eventId=" + eventId + ", eventIds=" + eventIds + ", category=" + category + ", categories=" + categories + ", triggerId=" <BUG>+ triggerId + ", triggerIds=" + triggerIds + ", tags=" + tags + ", thin=" + ...
public void addTag(String name, String value) { if (null == tags) { tags = new HashMap<>();
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import ml.puredark.hviewer.ui.activities.BaseActivity; import ml.puredark.hviewer.ui.dataproviders.ListDataProvider; import ml.puredark.hviewer.ui.fragments.SettingFragment; import ml.puredark.hviewer.ui.listeners.OnItemLongClickListener; import ml.puredark.hviewer.utils.SharedPreferencesUtil; <BUG>import static androi...
import static ml.puredark.hviewer.R.id.container; public class PictureViewerAdapter extends RecyclerView.Adapter<PictureViewerAdapter.PictureViewerViewHolder> {
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final PictureViewHolder viewHolder = new PictureViewHolder(view); if (pictures != null && position < pictures.size()) { final Picture picture = pictures.get(getPicturePostion(position)); if (picture.pic != null) { loadImage(container.getContext(), picture, viewHolder); <BUG>} else if (site.hasFlag(Site.FLAG_SINGLE_PAGE...
} else if (site.hasFlag(Site.FLAG_SINGLE_PAGE_BIG_PICTURE) && site.extraRule != null) { if(site.extraRule.pictureRule != null && site.extraRule.pictureRule.url != null) getPictureUrl(container.getContext(), viewHolder, picture, site, site.extraRule.pictureRule.url, site.extraRule.pictureRule.highRes); else if(site.extr...
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import java.util.regex.Pattern; import butterknife.BindView; import butterknife.ButterKnife; import ml.puredark.hviewer.R; import ml.puredark.hviewer.beans.Category; <BUG>import ml.puredark.hviewer.beans.CommentRule; import ml.puredark.hviewer.beans.Rule;</BUG> import ml.puredark.hviewer.beans.Selector; import ml.pured...
import ml.puredark.hviewer.beans.PictureRule; import ml.puredark.hviewer.beans.Rule;
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inputGalleryRulePictureUrlReplacement.setText(site.galleryRule.pictureUrl.replacement); } if (site.galleryRule.pictureHighRes != null) { inputGalleryRulePictureHighResSelector.setText(joinSelector(site.galleryRule.pictureHighRes)); inputGalleryRulePictureHighResRegex.setText(site.galleryRule.pictureHighRes.regex); <BUG...
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inputExtraRuleCommentDatetimeReplacement.setText(site.extraRule.commentDatetime.replacement); } if (site.extraRule.commentContent != null) { inputExtraRuleCommentContentSelector.setText(joinSelector(site.extraRule.commentContent)); inputExtraRuleCommentContentRegex.setText(site.extraRule.commentContent.regex); <BUG>inp...
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lastSite.galleryRule.cover = loadSelector(inputGalleryRuleCoverSelector, inputGalleryRuleCoverRegex, inputGalleryRuleCoverReplacement); lastSite.galleryRule.category = loadSelector(inputGalleryRuleCategorySelector, inputGalleryRuleCategoryRegex, inputGalleryRuleCategoryReplacement); lastSite.galleryRule.datetime = load...
lastSite.galleryRule.pictureRule = (lastSite.galleryRule.pictureRule == null) ? new PictureRule() : lastSite.galleryRule.pictureRule; lastSite.galleryRule.pictureRule.thumbnail = loadSelector(inputGalleryRulePictureThumbnailSelector, inputGalleryRulePictureThumbnailRegex, inputGalleryRulePictureThumbnailReplacement); l...
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lastSite.extraRule.cover = loadSelector(inputExtraRuleCoverSelector, inputExtraRuleCoverRegex, inputExtraRuleCoverReplacement); lastSite.extraRule.category = loadSelector(inputExtraRuleCategorySelector, inputExtraRuleCategoryRegex, inputExtraRuleCategoryReplacement); lastSite.extraRule.datetime = loadSelector(inputExtr...
lastSite.extraRule.pictureRule = (lastSite.extraRule.pictureRule == null) ? new PictureRule() : lastSite.extraRule.pictureRule; lastSite.extraRule.pictureRule.thumbnail = loadSelector(inputExtraRulePictureThumbnailSelector, inputExtraRulePictureThumbnailRegex, inputExtraRulePictureThumbnailReplacement); lastSite.extraR...
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notifyItemChanged(position); if (mItemClickListener != null) mItemClickListener.onItemClick(v, position); } }); <BUG>if (tag.selected) label.getChildAt(0).setBackgroundResource(R.color.colorPrimary); else label.getChildAt(0).setBackgroundResource(R.color.dimgray);</BUG> }
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loadPicture(picture, task, null, true); } else if (!TextUtils.isEmpty(picture.pic) && !highRes) { picture.retries = 0; loadPicture(picture, task, null, false); } else if (task.collection.site.hasFlag(Site.FLAG_SINGLE_PAGE_BIG_PICTURE) <BUG>&& task.collection.site.extraRule != null && task.collection.site.extraRule.pic...
&& task.collection.site.extraRule != null) { if(task.collection.site.extraRule.pictureRule != null && task.collection.site.extraRule.pictureRule.url != null) getPictureUrl(picture, task, task.collection.site.extraRule.pictureRule.url, task.collection.site.extraRule.pictureRule.highRes); else if(task.collection.site.ext...
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if (Picture.hasPicPosfix(picture.url)) { picture.pic = picture.url; loadPicture(picture, task, null, false); } else if (task.collection.site.hasFlag(Site.FLAG_JS_NEEDED_ALL)) { <BUG>new Handler(Looper.getMainLooper()).post(()->{ </BUG> WebView webView = new WebView(HViewerApplication.mContext); WebSettings mWebSettings...
new Handler(Looper.getMainLooper()).post(() -> {
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import org.apache.commons.lang3.math.NumberUtils; import org.json.JSONException; import org.mariotaku.microblog.library.MicroBlog; import org.mariotaku.microblog.library.MicroBlogException; import org.mariotaku.microblog.library.twitter.model.RateLimitStatus; <BUG>import org.mariotaku.microblog.library.twitter.model.St...
import org.mariotaku.pickncrop.library.PNCUtils; import org.mariotaku.sqliteqb.library.AllColumns;
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context.getApplicationContext().sendBroadcast(intent); } } @Nullable public static Location getCachedLocation(Context context) { <BUG>if (BuildConfig.DEBUG) { Log.v(LOGTAG, "Fetching cached location", new Exception()); }</BUG> Location location = null;
DebugLog.v(LOGTAG, "Fetching cached location", new Exception());
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FileBody fileBody = null; try { fileBody = getFileBody(context, imageUri); twitter.updateProfileBannerImage(fileBody); } finally { <BUG>Utils.closeSilently(fileBody); if (deleteImage && "file".equals(imageUri.getScheme())) { final File file = new File(imageUri.getPath()); if (!file.delete()) { Log.w(LOGTAG, String.form...
if (deleteImage) { Utils.deleteMedia(context, imageUri);
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FileBody fileBody = null; try { fileBody = getFileBody(context, imageUri); twitter.updateProfileBackgroundImage(fileBody, tile); } finally { <BUG>Utils.closeSilently(fileBody); if (deleteImage && "file".equals(imageUri.getScheme())) { final File file = new File(imageUri.getPath()); if (!file.delete()) { Log.w(LOGTAG, S...
twitter.updateProfileBannerImage(fileBody); if (deleteImage) { Utils.deleteMedia(context, imageUri);
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FileBody fileBody = null; try { fileBody = getFileBody(context, imageUri); return twitter.updateProfileImage(fileBody); } finally { <BUG>Utils.closeSilently(fileBody); if (deleteImage && "file".equals(imageUri.getScheme())) { final File file = new File(imageUri.getPath()); if (!file.delete()) { Log.w(LOGTAG, String.for...
twitter.updateProfileBannerImage(fileBody); if (deleteImage) { Utils.deleteMedia(context, imageUri);
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import org.mariotaku.twidere.receiver.NotificationReceiver; import org.mariotaku.twidere.service.LengthyOperationsService; import org.mariotaku.twidere.util.ActivityTracker; import org.mariotaku.twidere.util.AsyncTwitterWrapper; import org.mariotaku.twidere.util.DataStoreFunctionsKt; <BUG>import org.mariotaku.twidere.u...
import org.mariotaku.twidere.util.DebugLog; import org.mariotaku.twidere.util.ImagePreloader;
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final List<InetAddress> addresses = mDns.lookup(host); for (InetAddress address : addresses) { c.addRow(new String[]{host, address.getHostAddress()}); } } catch (final IOException ignore) { <BUG>if (BuildConfig.DEBUG) { Log.w(LOGTAG, ignore); }</BUG> }
DebugLog.w(LOGTAG, null, ignore);
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for (Location location : twitter.getAvailableTrends()) { map.put(location); } return map.pack(); } catch (final MicroBlogException e) { <BUG>if (BuildConfig.DEBUG) { Log.w(LOGTAG, e); }</BUG> }
DebugLog.w(LOGTAG, null, e);
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import android.content.Context; import android.content.SharedPreferences; import android.location.Location; import android.os.AsyncTask; import android.support.annotation.NonNull; <BUG>import android.util.Log; import org.mariotaku.twidere.BuildConfig; import org.mariotaku.twidere.Constants; import org.mariotaku.twidere...
import org.mariotaku.twidere.util.DebugLog; import org.mariotaku.twidere.util.JsonSerializer;
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} public static LatLng getCachedLatLng(@NonNull final Context context) { final Context appContext = context.getApplicationContext(); final SharedPreferences prefs = DependencyHolder.Companion.get(context).getPreferences(); if (!prefs.getBoolean(KEY_USAGE_STATISTICS, false)) return null; <BUG>if (BuildConfig.DEBUG) { Lo...
DebugLog.d(HotMobiLogger.LOGTAG, "getting cached location", null);
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public int destroySavedSearchAsync(final UserKey accountKey, final long searchId) { final DestroySavedSearchTask task = new DestroySavedSearchTask(accountKey, searchId); return asyncTaskManager.add(task, true); } public int destroyStatusAsync(final UserKey accountKey, final String statusId) { <BUG>final DestroyStatusTa...
final DestroyStatusTask task = new DestroyStatusTask(context, accountKey, statusId);
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@Override public void afterExecute(Bus handler, SingleResponse<Relationship> result) { if (result.hasData()) { handler.post(new FriendshipUpdatedEvent(accountKey, userKey, result.getData())); } else if (result.hasException()) { <BUG>if (BuildConfig.DEBUG) { Log.w(LOGTAG, "Unable to update friendship", result.getExcepti...
public UserKey[] getAccountKeys() { return DataStoreUtils.getActivatedAccountKeys(context);
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MicroBlog microBlog = MicroBlogAPIFactory.getInstance(context, accountId); if (!Utils.isOfficialCredentials(context, accountId)) continue; try { microBlog.setActivitiesAboutMeUnread(cursor); } catch (MicroBlogException e) { <BUG>if (BuildConfig.DEBUG) { Log.w(LOGTAG, e); }</BUG> }
DebugLog.w(LOGTAG, null, e);
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} @RootTask static Task<Exec.Result> exec(String parameter, int number) { Task<String> task1 = MyTask.create(parameter); Task<Integer> task2 = Adder.create(number, number + 2); <BUG>return Task.ofType(Exec.Result.class).named("exec", "/bin/sh") .in(() -> task1)</BUG> .in(() -> task2) .process(Exec.exec((str, i) -> args...
return Task.named("exec", "/bin/sh").ofType(Exec.Result.class) .in(() -> task1)
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return args; } static class MyTask { static final int PLUS = 10; static Task<String> create(String parameter) { <BUG>return Task.ofType(String.class).named("MyTask", parameter) .in(() -> Adder.create(parameter.length(), PLUS))</BUG> .in(() -> Fib.create(parameter.length())) .process((sum, fib) -> something(parameter, s...
return Task.named("MyTask", parameter).ofType(String.class) .in(() -> Adder.create(parameter.length(), PLUS))
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final String instanceField = "from instance"; final TaskContext context = TaskContext.inmem(); final AwaitingConsumer<String> val = new AwaitingConsumer<>(); @Test public void shouldJavaUtilSerialize() throws Exception { <BUG>Task<Long> task1 = Task.ofType(Long.class).named("Foo", "Bar", 39) .process(() -> 9999L); Task...
Task<Long> task1 = Task.named("Foo", "Bar", 39).ofType(Long.class) Task<String> task2 = Task.named("Baz", 40).ofType(String.class) .in(() -> task1)
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assertEquals(des.id().name(), "Baz"); assertEquals(val.awaitAndGet(), "[9999] hello 10004"); } @Test(expected = NotSerializableException.class) public void shouldNotSerializeWithInstanceFieldReference() throws Exception { <BUG>Task<String> task = Task.ofType(String.class).named("WithRef") .process(() -> instanceField +...
Task<String> task = Task.named("WithRef").ofType(String.class) .process(() -> instanceField + " causes an outer reference");
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serialize(task); } @Test public void shouldSerializeWithLocalReference() throws Exception { String local = instanceField; <BUG>Task<String> task = Task.ofType(String.class).named("WithLocalRef") .process(() -> local + " won't cause an outer reference");</BUG> serialize(task); Task<String> des = deserialize(); context.e...
Task<String> task = Task.named("WithLocalRef").ofType(String.class) .process(() -> local + " won't cause an outer reference");
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} @RootTask public static Task<String> standardArgs(int first, String second) { firstInt = first; secondString = second; <BUG>return Task.ofType(String.class).named("StandardArgs", first, second) .process(() -> second + " " + first * 100);</BUG> } @Test public void shouldParseFlags() throws Exception {
return Task.named("StandardArgs", first, second).ofType(String.class) .process(() -> second + " " + first * 100);
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assertThat(parsedEnum, is(CustomEnum.BAR)); } @RootTask public static Task<String> enums(CustomEnum enm) { parsedEnum = enm; <BUG>return Task.ofType(String.class).named("Enums", enm) .process(enm::toString);</BUG> } @Test public void shouldParseCustomTypes() throws Exception {
return Task.named("Enums", enm).ofType(String.class) .process(enm::toString);
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assertThat(parsedType.content, is("blarg parsed for you!")); } @RootTask public static Task<String> customType(CustomType myType) { parsedType = myType; <BUG>return Task.ofType(String.class).named("Types", myType.content) .process(() -> myType.content);</BUG> } public enum CustomEnum { BAR
return Task.named("Types", myType.content).ofType(String.class) .process(() -> myType.content);
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TaskContext taskContext = TaskContext.inmem(); TaskContext.Value<Long> value = taskContext.evaluate(fib92); value.consume(f92 -> System.out.println("fib(92) = " + f92)); } static Task<Long> create(long n) { <BUG>TaskBuilder<Long> fib = Task.ofType(Long.class).named("Fib", n); </BUG> if (n < 2) { return fib .process(() ...
TaskBuilder<Long> fib = Task.named("Fib", n).ofType(Long.class);
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this.ambientOcclusion = ambientOcclusion; this.gui3D = gui3d; this.builtin = builtin; this.particle = particle; this.cameraTransforms = cameraTransforms; <BUG>this.itemOverride = itemOverride; }</BUG> public IBakedModel getRetexturedModel (String textureName) { IBakedModel model = this; if (this.cache.containsKey(textu...
this.defaultSprite = defaultSprite; }
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return ModClusterSubsystemDescriptions.getListProxiesDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContex...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getEnableDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext con...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getProxyConfigurationDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(Operatio...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getResetDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext cont...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getRefreshDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext co...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getRemoveProxyDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContex...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getAddProxyDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext c...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getProxyInfoDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext ...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getStopDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext conte...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getDisableDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContext co...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getEnableContextDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationCont...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getDisableContextDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationCon...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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return ModClusterSubsystemDescriptions.getStopContextDescription(locale); } @Override public void execute(OperationContext context, ModelNode operation) throws OperationFailedException { <BUG>if (context.isNormalServer()) { context.addStep(new OperationStepHandler() {</BUG> @Override public void execute(OperationContex...
if (context.isNormalServer() && context.getServiceRegistry(false).getService(ModClusterService.NAME)!=null) { context.addStep(new OperationStepHandler() {
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import ml.puredark.hviewer.ui.activities.BaseActivity; import ml.puredark.hviewer.ui.dataproviders.ListDataProvider; import ml.puredark.hviewer.ui.fragments.SettingFragment; import ml.puredark.hviewer.ui.listeners.OnItemLongClickListener; import ml.puredark.hviewer.utils.SharedPreferencesUtil; <BUG>import static androi...
import static ml.puredark.hviewer.R.id.container; public class PictureViewerAdapter extends RecyclerView.Adapter<PictureViewerAdapter.PictureViewerViewHolder> {
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final PictureViewHolder viewHolder = new PictureViewHolder(view); if (pictures != null && position < pictures.size()) { final Picture picture = pictures.get(getPicturePostion(position)); if (picture.pic != null) { loadImage(container.getContext(), picture, viewHolder); <BUG>} else if (site.hasFlag(Site.FLAG_SINGLE_PAGE...
} else if (site.hasFlag(Site.FLAG_SINGLE_PAGE_BIG_PICTURE) && site.extraRule != null) { if(site.extraRule.pictureRule != null && site.extraRule.pictureRule.url != null) getPictureUrl(container.getContext(), viewHolder, picture, site, site.extraRule.pictureRule.url, site.extraRule.pictureRule.highRes); else if(site.extr...
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import java.util.regex.Pattern; import butterknife.BindView; import butterknife.ButterKnife; import ml.puredark.hviewer.R; import ml.puredark.hviewer.beans.Category; <BUG>import ml.puredark.hviewer.beans.CommentRule; import ml.puredark.hviewer.beans.Rule;</BUG> import ml.puredark.hviewer.beans.Selector; import ml.pured...
import ml.puredark.hviewer.beans.PictureRule; import ml.puredark.hviewer.beans.Rule;
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inputGalleryRulePictureUrlReplacement.setText(site.galleryRule.pictureUrl.replacement); } if (site.galleryRule.pictureHighRes != null) { inputGalleryRulePictureHighResSelector.setText(joinSelector(site.galleryRule.pictureHighRes)); inputGalleryRulePictureHighResRegex.setText(site.galleryRule.pictureHighRes.regex); <BUG...
[DELETED]
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inputExtraRuleCommentDatetimeReplacement.setText(site.extraRule.commentDatetime.replacement); } if (site.extraRule.commentContent != null) { inputExtraRuleCommentContentSelector.setText(joinSelector(site.extraRule.commentContent)); inputExtraRuleCommentContentRegex.setText(site.extraRule.commentContent.regex); <BUG>inp...
[DELETED]
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lastSite.galleryRule.cover = loadSelector(inputGalleryRuleCoverSelector, inputGalleryRuleCoverRegex, inputGalleryRuleCoverReplacement); lastSite.galleryRule.category = loadSelector(inputGalleryRuleCategorySelector, inputGalleryRuleCategoryRegex, inputGalleryRuleCategoryReplacement); lastSite.galleryRule.datetime = load...
lastSite.galleryRule.pictureRule = (lastSite.galleryRule.pictureRule == null) ? new PictureRule() : lastSite.galleryRule.pictureRule; lastSite.galleryRule.pictureRule.thumbnail = loadSelector(inputGalleryRulePictureThumbnailSelector, inputGalleryRulePictureThumbnailRegex, inputGalleryRulePictureThumbnailReplacement); l...
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lastSite.extraRule.cover = loadSelector(inputExtraRuleCoverSelector, inputExtraRuleCoverRegex, inputExtraRuleCoverReplacement); lastSite.extraRule.category = loadSelector(inputExtraRuleCategorySelector, inputExtraRuleCategoryRegex, inputExtraRuleCategoryReplacement); lastSite.extraRule.datetime = loadSelector(inputExtr...
lastSite.extraRule.pictureRule = (lastSite.extraRule.pictureRule == null) ? new PictureRule() : lastSite.extraRule.pictureRule; lastSite.extraRule.pictureRule.thumbnail = loadSelector(inputExtraRulePictureThumbnailSelector, inputExtraRulePictureThumbnailRegex, inputExtraRulePictureThumbnailReplacement); lastSite.extraR...
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notifyItemChanged(position); if (mItemClickListener != null) mItemClickListener.onItemClick(v, position); } }); <BUG>if (tag.selected) label.getChildAt(0).setBackgroundResource(R.color.colorPrimary); else label.getChildAt(0).setBackgroundResource(R.color.dimgray);</BUG> }
[DELETED]
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loadPicture(picture, task, null, true); } else if (!TextUtils.isEmpty(picture.pic) && !highRes) { picture.retries = 0; loadPicture(picture, task, null, false); } else if (task.collection.site.hasFlag(Site.FLAG_SINGLE_PAGE_BIG_PICTURE) <BUG>&& task.collection.site.extraRule != null && task.collection.site.extraRule.pic...
&& task.collection.site.extraRule != null) { if(task.collection.site.extraRule.pictureRule != null && task.collection.site.extraRule.pictureRule.url != null) getPictureUrl(picture, task, task.collection.site.extraRule.pictureRule.url, task.collection.site.extraRule.pictureRule.highRes); else if(task.collection.site.ext...
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if (Picture.hasPicPosfix(picture.url)) { picture.pic = picture.url; loadPicture(picture, task, null, false); } else if (task.collection.site.hasFlag(Site.FLAG_JS_NEEDED_ALL)) { <BUG>new Handler(Looper.getMainLooper()).post(()->{ </BUG> WebView webView = new WebView(HViewerApplication.mContext); WebSettings mWebSettings...
new Handler(Looper.getMainLooper()).post(() -> {
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public class CycleCovariate implements StandardCovariate { private static boolean warnedUserBadPlatform = false; private static String defaultPlatform; public void initialize( final RecalibrationArgumentCollection RAC ) { if( RAC.DEFAULT_PLATFORM.equalsIgnoreCase( "SLX" ) || RAC.DEFAULT_PLATFORM.equalsIgnoreCase( "ILLU...
RAC.DEFAULT_PLATFORM.contains( "454" ) || RAC.DEFAULT_PLATFORM.equalsIgnoreCase( "SOLID" ) || RAC.DEFAULT_PLATFORM.equalsIgnoreCase( "ABI_SOLID" ) ) {
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throw new StingException( "The requested default platform (" + RAC.DEFAULT_PLATFORM +") is not a recognized platform. Implemented options are illumina, 454, and solid"); } } public final Comparable getValue( final SAMRecord read, final int offset ) { int cycle = 1; <BUG>if( read.getReadGroup().getPlatform().equalsIgnor...
if( read.getReadGroup().getPlatform().equalsIgnoreCase( "ILLUMINA" ) || read.getReadGroup().getPlatform().equalsIgnoreCase( "SLX" ) || // Some bams have "illumina" and others have "SLX" read.getReadGroup().getPlatform().equalsIgnoreCase( "SOLID" ) || read.getReadGroup().getPlatform().equalsIgnoreCase( "ABI_SOLID" )) { ...
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public SAMRecord map( char[] refBases, SAMRecord read ) { RecalDataManager.parseSAMRecord( read, RAC ); byte[] originalQuals = read.getBaseQualities(); final byte[] recalQuals = originalQuals.clone(); final String platform = read.getReadGroup().getPlatform(); <BUG>if( platform.equalsIgnoreCase("SOLID") && !RAC.SOLID_RE...
if( platform.toUpperCase().contains("SOLID") && !RAC.SOLID_RECAL_MODE.equalsIgnoreCase("DO_NOTHING") ) {
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public final static String COLOR_SPACE_QUAL_ATTRIBUTE_TAG = "CQ"; // The tag that holds the color space quality scores for SOLID bams public final static String COLOR_SPACE_ATTRIBUTE_TAG = "CS"; // The tag that holds the color space for SOLID bams public final static String COLOR_SPACE_INCONSISTENCY_TAG = "ZC"; // A ne...
public static final String versionString = "v2.2.15"; // Major version, minor version, and build number
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if ( readGroup.getPlatform() == null ) { readGroup.setPlatform( RAC.DEFAULT_PLATFORM ); } } public static void parseColorSpace( final SAMRecord read ) { <BUG>if( read.getReadGroup().getPlatform().equalsIgnoreCase("SOLID") ) { </BUG> if( read.getAttribute(RecalDataManager.COLOR_SPACE_INCONSISTENCY_TAG) == null ) { // Ha...
if( read.getReadGroup().getPlatform().toUpperCase().contains("SOLID") ) {
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return originalQualScores; } private static byte[] solidRecalSetToQZero( final SAMRecord read, byte[] readBases, final int[] inconsistency, final byte[] originalQualScores, final char[] refBases, final boolean setBaseN ) { final boolean negStrand = read.getReadNegativeStrandFlag(); <BUG>for( int iii = 1; iii < original...
for( int iii = 1; iii < originalQualScores.length; iii++ ) { if( inconsistency[iii] == 1 ) {
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RecalDataManager.parseColorSpace( read ); if( read.getBaseQualities()[offset] > 0 ) { bases = read.getReadBases(); refBase = (byte)ref.getBase(); if( BaseUtils.isRegularBase( (char)(bases[offset]) ) ) { <BUG>if( !read.getReadGroup().getPlatform().equalsIgnoreCase("SOLID") || RAC.SOLID_RECAL_MODE.equalsIgnoreCase("DO_NO...
if( !read.getReadGroup().getPlatform().toUpperCase().contains("SOLID") || RAC.SOLID_RECAL_MODE.equalsIgnoreCase("DO_NOTHING") || !RecalDataManager.isInconsistentColorSpace( read, offset ) ) {
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import java.util.Arrays; import java.util.List; import java.io.File; public class RecalibrationWalkersIntegrationTest extends WalkerTest { static HashMap<String, String> paramsFiles = new HashMap<String, String>(); <BUG>static HashMap<String, String> paramsFilesNoReadGroupTest = new HashMap<String, String>(); @Test</BU...
static HashMap<String, String> paramsFilesSolidIndels = new HashMap<String, String>(); @Test
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} @Test public void testTableRecalibrator1() { HashMap<String, String> e = new HashMap<String, String>(); e.put( validationDataLocation + "NA12892.SLX.SRP000031.2009_06.selected.bam", "6c59d291c37d053e0f188b762f3060a5" ); <BUG>e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "e06f1397b9c40f75...
e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "d0e902b071831bc10cc396e7e082b3c1"); e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.allTechs.bam", "467c7304cd049d1629c3675fdd61fc00" );
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} } @Test public void testTableRecalibratorMaxQ70() { HashMap<String, String> e = new HashMap<String, String>(); <BUG>e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "665711dfb81d67582b28faea24e26160" ); </BUG> for ( Map.Entry<String, String> entry : e.entrySet() ) { String bam = entry.getKe...
public void testTableRecalibrator1() { e.put( validationDataLocation + "NA12892.SLX.SRP000031.2009_06.selected.bam", "6c59d291c37d053e0f188b762f3060a5" ); e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "d0e902b071831bc10cc396e7e082b3c1"); e.put( validationDataLocation + "NA12873.454.SRP0000...
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new PathAwareCrawler<>( FormulaExecutorComponentVisitor.newBuilder(metricRepository, measureRepository) .withVariationSupport(periodsHolder) .buildFor( Iterables.concat( <BUG>NewLinesAndConditionsCoverageFormula.from(batchReportReader), NewItLinesAndConditionsCoverageFormula.from(batchReportReader), NewOverallLinesAn...
NewLinesAndConditionsCoverageFormula.from(scmInfoRepository), NewItLinesAndConditionsCoverageFormula.from(scmInfoRepository), NewOverallLinesAndConditionsCoverageFormula.from(scmInfoRepository),
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private static class NewLinesAndConditionsCoverageFormula extends NewLinesAndConditionsFormula { private static final NewCoverageOutputMetricKeys OUTPUT_METRIC_KEYS = new NewCoverageOutputMetricKeys( CoreMetrics.NEW_LINES_TO_COVER_KEY, CoreMetrics.NEW_UNCOVERED_LINES_KEY, CoreMetrics.NEW_CONDITIONS_TO_COVER_KEY, CoreMe...
private NewLinesAndConditionsCoverageFormula(ScmInfoRepository scmInfoRepository) { super(scmInfoRepository, new NewCoverageInputMetricKeys(