id int64 1 49k | buggy stringlengths 34 37.5k | fixed stringlengths 2 37k |
|---|---|---|
48,601 | return factory.dumpChannels();
}
public ObjectName preRegister(MBeanServer server, ObjectName name) throws Exception {
this.server=server;
if(factory != null)
<BUG>factory.setServer(server);
return ObjectName.getInstance(getDomain());
</BUG>
}
public void postRegister(Boolean registrationDone) {
| if (name != null) {//we only create a name if it is empty
return name;
String objectName = getDomain() + " : service=JChannelFactory";
return ObjectName.getInstance(objectName);
|
48,602 | import org.spongepowered.api.world.Locatable;
import org.spongepowered.api.world.Location;
import org.spongepowered.api.world.World;
import javax.annotation.Nullable;
import java.util.List;
<BUG>import java.util.Optional;
import static net.foxdenstudio.sponge.foxcore.plugin.util.Aliases.*;</BUG>
public class CommandDel... | import java.util.stream.Stream;
import static net.foxdenstudio.sponge.foxcore.plugin.util.Aliases.*;
|
48,603 | .append(Text.of(TextColors.GREEN, "Usage: "))
.append(getUsage(source))
.build());
return CommandResult.empty();
} else if (isIn(REGIONS_ALIASES, parse.args[0])) {
<BUG>if (parse.args.length < 2) throw new CommandException(Text.of("Must specify a name!"));
IRegion region = FGManager.getInstance().getRegion(parse.args[1... | String regionName = parse.args[1];
IRegion region = FGManager.getInstance().getRegion(regionName).orElse(null);
|
48,604 | </BUG>
isWorldRegion = true;
}
if (region == null)
<BUG>throw new CommandException(Text.of("No region exists with the name \"" + parse.args[1] + "\"!"));
if (region instanceof GlobalWorldRegion) {
</BUG>
throw new CommandException(Text.of("You may not delete the global region!"));
}
| if (world == null)
throw new CommandException(Text.of("No world exists with name \"" + worldName + "\"!"));
if (world == null) throw new CommandException(Text.of("Must specify a world!"));
region = FGManager.getInstance().getWorldRegion(world, regionName).orElse(null);
throw new CommandException(Text.of("No region exis... |
48,605 | source.getName() + " deleted " + (isWorldRegion ? "world" : "") + "region"
);
return CommandResult.success();
} else if (isIn(HANDLERS_ALIASES, parse.args[0])) {
if (parse.args.length < 2) throw new CommandException(Text.of("Must specify a name!"));
<BUG>IHandler handler = FGManager.getInstance().gethandler(parse.args[... | Optional<IHandler> handlerOpt = FGManager.getInstance().gethandler(parse.args[1]);
if (!handlerOpt.isPresent())
IHandler handler = handlerOpt.get();
if (handler instanceof GlobalHandler)
|
48,606 | .excludeCurrent(true)
.autoCloseQuotes(true)
.parse();
if (parse.current.type.equals(AdvCmdParser.CurrentElement.ElementType.ARGUMENT)) {
if (parse.current.index == 0)
<BUG>return ImmutableList.of("region", "handler").stream()
.filter(new StartsWithPredicate(parse.current.token))</BUG>
.map(args -> parse.current.prefix... | return Stream.of("region", "handler")
.filter(new StartsWithPredicate(parse.current.token))
|
48,607 | .excludeCurrent(true)
.autoCloseQuotes(true)
.parse();
if (parse.current.type.equals(AdvCmdParser.CurrentElement.ElementType.ARGUMENT)) {
if (parse.current.index == 0)
<BUG>return ImmutableList.of("region", "handler").stream()
.filter(new StartsWithPredicate(parse.current.token))</BUG>
.map(args -> parse.current.prefix... | return Stream.of("region", "handler")
.filter(new StartsWithPredicate(parse.current.token))
|
48,608 | @Dependency(id = "foxcore")
},
description = "A world protection plugin built for SpongeAPI. Requires FoxCore.",
authors = {"gravityfox"},
url = "https://github.com/FoxDenStudio/FoxGuard")
<BUG>public final class FoxGuardMain {
public final Cause pluginCause = Cause.builder().named("plugin", this).build();
private stat... | private static FoxGuardMain instanceField;
|
48,609 | private UserStorageService userStorage;
private EconomyService economyService = null;
private boolean loaded = false;
private FCCommandDispatcher fgDispatcher;
public static FoxGuardMain instance() {
<BUG>return instanceField;
}</BUG>
@Listener
public void construct(GameConstructionEvent event) {
instanceField = this;
| }
public static Cause getCause() {
return instance().pluginCause;
}
|
48,610 | return configDirectory;
}
public boolean isLoaded() {
return loaded;
}
<BUG>public static Cause getCause() {
return instance().pluginCause;
}</BUG>
public EconomyService getEconomyService() {
return economyService;
| [DELETED] |
48,611 | import org.spongepowered.api.world.Locatable;
import org.spongepowered.api.world.Location;
import org.spongepowered.api.world.World;
import javax.annotation.Nullable;
import java.util.*;
<BUG>import java.util.stream.Collectors;
import static net.foxdenstudio.sponge.foxcore.plugin.util.Aliases.*;</BUG>
public class Comm... | import java.util.stream.Stream;
import static net.foxdenstudio.sponge.foxcore.plugin.util.Aliases.*;
|
48,612 | .excludeCurrent(true)
.autoCloseQuotes(true)
.parse();
if (parse.current.type.equals(AdvCmdParser.CurrentElement.ElementType.ARGUMENT)) {
if (parse.current.index == 0)
<BUG>return ImmutableList.of("region", "handler").stream()
.filter(new StartsWithPredicate(parse.current.token))</BUG>
.map(args -> parse.current.prefix... | return Stream.of("region", "handler")
.filter(new StartsWithPredicate(parse.current.token))
|
48,613 | private static FGStorageManager instance;
private final Logger logger = FoxGuardMain.instance().getLogger();</BUG>
private final Set<LoadEntry> loaded = new HashSet<>();
private final Path directory = getDirectory();
private final Map<String, Path> worldDirectories;
<BUG>private FGStorageManager() {
defaultModifiedMap ... | public final HashMap<IFGObject, Boolean> defaultModifiedMap;
private final UserStorageService userStorageService;
private final Logger logger = FoxGuardMain.instance().getLogger();
userStorageService = FoxGuardMain.instance().getUserStorage();
defaultModifiedMap = new CacheMap<>((k, m) -> {
|
48,614 | String name = fgObject.getName();
Path singleDir = dir.resolve(name.toLowerCase());
</BUG>
boolean shouldSave = fgObject.shouldSave();
if (force || shouldSave) {
<BUG>logger.info((shouldSave ? "S" : "Force s") + "aving handler \"" + name + "\" in directory: " + singleDir);
</BUG>
constructDirectory(singleDir);
try {
fg... | UUID owner = fgObject.getOwner();
boolean isOwned = !owner.equals(SERVER_UUID);
Optional<User> userOwner = userStorageService.get(owner);
String logName = (userOwner.isPresent() ? userOwner.get().getName() + ":" : "") + (isOwned ? owner + ":" : "") + name;
if (fgObject.autoSave()) {
Path singleDir = serverDir.resolve(n... |
48,615 | if (fgObject.autoSave()) {
Path singleDir = dir.resolve(name.toLowerCase());
</BUG>
boolean shouldSave = fgObject.shouldSave();
if (force || shouldSave) {
<BUG>logger.info((shouldSave ? "S" : "Force s") + "aving world region \"" + name + "\" in directory: " + singleDir);
</BUG>
constructDirectory(singleDir);
try {
fgOb... | Path singleDir = serverDir.resolve(name.toLowerCase());
logger.info((shouldSave ? "S" : "Force s") + "aving world region " + logName + " in directory: " + singleDir);
|
48,616 | public synchronized void loadRegionLinks() {
logger.info("Loading region links");
try (DB mainDB = DBMaker.fileDB(directory.resolve("regions.foxdb").normalize().toString()).make()) {
Map<String, String> linksMap = mainDB.hashMap("links", Serializer.STRING, Serializer.STRING).createOrOpen();
linksMap.entrySet().forEach(... | Optional<IRegion> regionOpt = FGManager.getInstance().getRegion(entry.getKey());
if (regionOpt.isPresent()) {
IRegion region = regionOpt.get();
logger.info("Loading links for region \"" + region.getName() + "\"");
|
48,617 | public synchronized void loadWorldRegionLinks(World world) {
logger.info("Loading world region links for world \"" + world.getName() + "\"");
try (DB mainDB = DBMaker.fileDB(worldDirectories.get(world.getName()).resolve("wregions.foxdb").normalize().toString()).make()) {
Map<String, String> linksMap = mainDB.hashMap("l... | Optional<IWorldRegion> regionOpt = FGManager.getInstance().getWorldRegion(world, entry.getKey());
if (regionOpt.isPresent()) {
IWorldRegion region = regionOpt.get();
logger.info("Loading links for world region \"" + region.getName() + "\"");
|
48,618 | StringBuilder builder = new StringBuilder();
for (Iterator<IHandler> it = handlers.iterator(); it.hasNext(); ) {
builder.append(it.next().getName());
if (it.hasNext()) builder.append(",");
}
<BUG>return builder.toString();
}</BUG>
private final class LoadEntry {
public final String name;
public final Type type;
| public enum Type {
REGION, WREGION, HANDLER
|
48,619 | .autoCloseQuotes(true)
.leaveFinalAsIs(true)
.parse();
if (parse.current.type.equals(AdvCmdParser.CurrentElement.ElementType.ARGUMENT)) {
if (parse.current.index == 0)
<BUG>return ImmutableList.of("region", "worldregion", "handler", "controller").stream()
</BUG>
.filter(new StartsWithPredicate(parse.current.token))
.co... | return Stream.of("region", "worldregion", "handler", "controller")
|
48,620 | Map<String, Object> _revisions = ClientTestUtils.getRevisionHistory(revision3, revision2, revision1);
doc1.put(CouchConstants._rev, revision3);
doc1.put(CouchConstants._revisions, _revisions);
List<Response> responses = client.bulkCreateDocs(doc1);
Assert.assertEquals(0, responses.size());
<BUG>Map<String, Object> allR... | Map<String, Object> allRevs = client.getDocRevisions(res1.getId(), revision3, JSONUtils.STRING_MAP_TYPE_DEF);
|
48,621 | Assert.assertEquals("world", doc.get("hello"));
Assert.assertTrue(doc.containsKey(CouchConstants._id));
Assert.assertEquals(res.getId(), doc.get(CouchConstants._id));
Assert.assertTrue(doc.containsKey(CouchConstants._rev));
Assert.assertEquals(res.getRev(), doc.get(CouchConstants._rev));
<BUG>}
@Test(expected = NoResou... | [DELETED] |
48,622 | import com.cloudant.sync.internal.mazha.DocumentRevs;
import com.cloudant.sync.internal.mazha.Response;
<BUG>import com.cloudant.sync.internal.documentstore.InternalDocumentRevision;
import com.cloudant.sync.internal.documentstore.DocumentRevsList;
import com.cloudant.sync.internal.documentstore.MultipartAttachmentWrit... | [DELETED] |
48,623 | return executeResult;
} finally {
IOUtils.closeQuietly(errorStream);
}
}
<BUG>private InputStream executeToInputStreamWithRetry(final Callable<ExecuteResult> task) throws CouchException {
int attempts = 10;
CouchException lastException= null;
</BUG>
while (attempts-- > 0) {
| private <T> T executeWithRetry(final Callable<ExecuteResult> task,
InputStreamProcessor<T> processor) throws
CouchException lastException = null;
|
48,624 | public boolean contains(String id) {
Misc.checkNotNullOrEmpty(id, "id");
URI doc = this.uriHelper.documentUri(id);
try {
HttpConnection connection = Http.HEAD(doc);
<BUG>this.executeToInputStreamWithRetry(connection);
return true;</BUG>
} catch (Exception e) {
return false;
}
| this.executeWithRetry(connection, new NoOpInputStreamProcessor());
return true;
|
48,625 | final URI doc = this.uriHelper.attachmentUri(id, queries, attachmentName);
HttpConnection connection = Http.GET(doc);
if (acceptGzip) {
connection.requestProperties.put("Accept-Encoding", "gzip");
}
<BUG>return executeToInputStreamWithRetry(connection);
</BUG>
}
public void putAttachmentStream(String id, String rev, St... | return executeWithRetry(connection, processor);
|
48,626 | } else {
options.put("attachments", false);
options.put("att_encoding_info", true);
}
options.put("open_revs", JSONUtils.toJson(revisions));
<BUG>return this.getDocument(id, options, JSONUtils.openRevisionList());
}</BUG>
public Iterable<DocumentRevsList> bulkReadDocsWithOpenRevisions(List<BulkGetRequest> request,
bool... | return this.getDocument(id, options, JSONUtils.OPEN_REVS_LIST_TYPE_DEF);
|
48,627 | Misc.checkNotNull(rev, "Revision ID");
Map<String, Object> queries = new HashMap<String, Object>();
queries.put("revs", "true");
queries.put("rev", rev);
URI findRevs = this.uriHelper.documentUri(id, queries);
<BUG>InputStream is = null;
try {
HttpConnection connection = Http.GET(findRevs);
is = this.executeToInputStre... | return executeToJsonObjectWithRetry(connection, type);
|
48,628 | package com.cloudant.sync.internal.replication;
import com.cloudant.http.HttpConnectionRequestInterceptor;
import com.cloudant.http.HttpConnectionResponseInterceptor;
<BUG>import com.cloudant.sync.internal.mazha.ChangesResult;
import com.cloudant.sync.internal.mazha.CouchClient;
import com.cloudant.sync.internal.mazha.... | [DELETED] |
48,629 | attachmentName);
if (a != null) {
continue;
}
}
<BUG>UnsavedStreamAttachment usa = this.sourceDb
.getAttachmentStream(documentRevs.getId(),
documentRevs.getRev(), attachmentName,
contentType, encoding);
preparedAtts.put(attachmentName, this.targetDb.prepareAttachment(usa, length,
encodedLength));
}</BUG>
}
| preparedAtts.put(attachmentName, this.sourceDb.pullAttachmentWithRetry
(documentRevs.getId(), documentRevs.getRev(), entry
.getKey(), new AttachmentPullProcessor(this
.targetDb, entry.getKey(), contentType,
encoding, length, encodedLength)));
|
48,630 | import org.ofbiz.entity.GenericValue;
import org.ofbiz.entity.condition.EntityCondition;
import org.ofbiz.entity.condition.EntityOperator;
import org.ofbiz.entity.util.EntityUtil;
import org.ofbiz.service.DispatchContext;
<BUG>import org.ofbiz.service.LocalDispatcher;
import org.ofbiz.service.ServiceUtil;</BUG>
import ... | import org.ofbiz.service.ModelService;
import org.ofbiz.service.ServiceUtil;
|
48,631 | if (UtilValidate.isEmpty(startPrice)) {
GenericValue startPriceValue = EntityUtil.getFirst(EntityUtil.filterByDate(prod.getRelatedByAnd("ProductPrice", UtilMisc.toMap("productPricePurposeId", "EBAY", "productPriceTypeId", "MINIMUM_PRICE"))));
if (UtilValidate.isNotEmpty(startPriceValue)) {
startPrice = startPriceValue.... | [DELETED] |
48,632 | import org.apache.commons.lang3.math.NumberUtils;
import org.json.JSONException;
import org.mariotaku.microblog.library.MicroBlog;
import org.mariotaku.microblog.library.MicroBlogException;
import org.mariotaku.microblog.library.twitter.model.RateLimitStatus;
<BUG>import org.mariotaku.microblog.library.twitter.model.St... | import org.mariotaku.pickncrop.library.PNCUtils;
import org.mariotaku.sqliteqb.library.AllColumns;
|
48,633 | context.getApplicationContext().sendBroadcast(intent);
}
}
@Nullable
public static Location getCachedLocation(Context context) {
<BUG>if (BuildConfig.DEBUG) {
Log.v(LOGTAG, "Fetching cached location", new Exception());
}</BUG>
Location location = null;
| DebugLog.v(LOGTAG, "Fetching cached location", new Exception());
|
48,634 | FileBody fileBody = null;
try {
fileBody = getFileBody(context, imageUri);
twitter.updateProfileBannerImage(fileBody);
} finally {
<BUG>Utils.closeSilently(fileBody);
if (deleteImage && "file".equals(imageUri.getScheme())) {
final File file = new File(imageUri.getPath());
if (!file.delete()) {
Log.w(LOGTAG, String.form... | if (deleteImage) {
Utils.deleteMedia(context, imageUri);
|
48,635 | FileBody fileBody = null;
try {
fileBody = getFileBody(context, imageUri);
twitter.updateProfileBackgroundImage(fileBody, tile);
} finally {
<BUG>Utils.closeSilently(fileBody);
if (deleteImage && "file".equals(imageUri.getScheme())) {
final File file = new File(imageUri.getPath());
if (!file.delete()) {
Log.w(LOGTAG, S... | twitter.updateProfileBannerImage(fileBody);
if (deleteImage) {
Utils.deleteMedia(context, imageUri);
|
48,636 | FileBody fileBody = null;
try {
fileBody = getFileBody(context, imageUri);
return twitter.updateProfileImage(fileBody);
} finally {
<BUG>Utils.closeSilently(fileBody);
if (deleteImage && "file".equals(imageUri.getScheme())) {
final File file = new File(imageUri.getPath());
if (!file.delete()) {
Log.w(LOGTAG, String.for... | twitter.updateProfileBannerImage(fileBody);
if (deleteImage) {
Utils.deleteMedia(context, imageUri);
|
48,637 | import org.mariotaku.twidere.receiver.NotificationReceiver;
import org.mariotaku.twidere.service.LengthyOperationsService;
import org.mariotaku.twidere.util.ActivityTracker;
import org.mariotaku.twidere.util.AsyncTwitterWrapper;
import org.mariotaku.twidere.util.DataStoreFunctionsKt;
<BUG>import org.mariotaku.twidere.u... | import org.mariotaku.twidere.util.DebugLog;
import org.mariotaku.twidere.util.ImagePreloader;
|
48,638 | final List<InetAddress> addresses = mDns.lookup(host);
for (InetAddress address : addresses) {
c.addRow(new String[]{host, address.getHostAddress()});
}
} catch (final IOException ignore) {
<BUG>if (BuildConfig.DEBUG) {
Log.w(LOGTAG, ignore);
}</BUG>
}
| DebugLog.w(LOGTAG, null, ignore);
|
48,639 | for (Location location : twitter.getAvailableTrends()) {
map.put(location);
}
return map.pack();
} catch (final MicroBlogException e) {
<BUG>if (BuildConfig.DEBUG) {
Log.w(LOGTAG, e);
}</BUG>
}
| DebugLog.w(LOGTAG, null, e);
|
48,640 | import android.content.Context;
import android.content.SharedPreferences;
import android.location.Location;
import android.os.AsyncTask;
import android.support.annotation.NonNull;
<BUG>import android.util.Log;
import org.mariotaku.twidere.BuildConfig;
import org.mariotaku.twidere.Constants;
import org.mariotaku.twidere... | import org.mariotaku.twidere.util.DebugLog;
import org.mariotaku.twidere.util.JsonSerializer;
|
48,641 | }
public static LatLng getCachedLatLng(@NonNull final Context context) {
final Context appContext = context.getApplicationContext();
final SharedPreferences prefs = DependencyHolder.Companion.get(context).getPreferences();
if (!prefs.getBoolean(KEY_USAGE_STATISTICS, false)) return null;
<BUG>if (BuildConfig.DEBUG) {
Lo... | DebugLog.d(HotMobiLogger.LOGTAG, "getting cached location", null);
|
48,642 | public int destroySavedSearchAsync(final UserKey accountKey, final long searchId) {
final DestroySavedSearchTask task = new DestroySavedSearchTask(accountKey, searchId);
return asyncTaskManager.add(task, true);
}
public int destroyStatusAsync(final UserKey accountKey, final String statusId) {
<BUG>final DestroyStatusTa... | final DestroyStatusTask task = new DestroyStatusTask(context, accountKey, statusId);
|
48,643 | @Override
public void afterExecute(Bus handler, SingleResponse<Relationship> result) {
if (result.hasData()) {
handler.post(new FriendshipUpdatedEvent(accountKey, userKey, result.getData()));
} else if (result.hasException()) {
<BUG>if (BuildConfig.DEBUG) {
Log.w(LOGTAG, "Unable to update friendship", result.getExcepti... | public UserKey[] getAccountKeys() {
return DataStoreUtils.getActivatedAccountKeys(context);
|
48,644 | MicroBlog microBlog = MicroBlogAPIFactory.getInstance(context, accountId);
if (!Utils.isOfficialCredentials(context, accountId)) continue;
try {
microBlog.setActivitiesAboutMeUnread(cursor);
} catch (MicroBlogException e) {
<BUG>if (BuildConfig.DEBUG) {
Log.w(LOGTAG, e);
}</BUG>
}
| DebugLog.w(LOGTAG, null, e);
|
48,645 | final String vcsUrl = vcsRoot.getUrl();
final MyRootFilter rootFilter = myOtherVcsFolders.get(vcsUrl);
if ((rootFilter != null) && (! rootFilter.accept(file))) {
return false;
}
<BUG>final Boolean excluded = isExcluded(myExcludedFileIndex, file);
if (excluded) return false;
return true;</BUG>
}
| return !isExcluded(myExcludedFileIndex, file);
|
48,646 | import org.jitsi.impl.neomedia.device.*;
import org.jitsi.service.resources.*;
import org.osgi.framework.*;
public class AudioDeviceConfigurationListener
extends AbstractDeviceConfigurationListener
<BUG>{
public AudioDeviceConfigurationListener(</BUG>
ConfigurationForm configurationForm)
{
super(configurationForm);
| private CaptureDeviceInfo captureDevice = null;
private CaptureDeviceInfo playbackDevice = null;
private CaptureDeviceInfo notificationDevice = null;
public AudioDeviceConfigurationListener(
|
48,647 | ResourceManagementService resources
= NeomediaActivator.getResources();
notificationService.fireNotification(
popUpEvent,
title,
<BUG>device.getName()
+ "\r\n"
</BUG>
+ resources.getI18NString(
"impl.media.configform"
| body
+ "\r\n\r\n"
|
48,648 | import com.intellij.codeInsight.daemon.DaemonCodeAnalyzerSettings;
import com.intellij.codeInsight.daemon.HighlightDisplayKey;
import com.intellij.codeInsight.daemon.impl.quickfix.QuickFixAction;
import com.intellij.codeInsight.daemon.impl.analysis.HighlightUtil;
import com.intellij.codeInsight.intention.IntentionActio... | import com.intellij.codeInspection.*;
|
48,649 | options.add(new AddNoInspectionDocTagAction(tool, psiElement));
options.add(new AddNoInspectionForClassAction(tool, psiElement));
options.add(new AddSuppressWarningsAnnotationAction(tool, psiElement));
options.add(new AddSuppressWarningsAnnotationForClassAction(tool, psiElement));
options.add(new AddSuppressWarningsAnn... | final LocalQuickFix[] fixes = problemDescriptor.getFixes();
if (fixes != null && fixes.length > 0) {
for (int k = 0; k < problemDescriptor.getFixes().length; k++) {
|
48,650 | options.add(new AddNoInspectionForClassAction(tool, psiElement));
options.add(new AddNoInspectionAllForClassAction(psiElement));
options.add(new AddSuppressWarningsAnnotationAction(tool, psiElement));
options.add(new AddSuppressWarningsAnnotationForClassAction(tool, psiElement));
options.add(new AddSuppressWarningsAnno... | final LocalQuickFix[] fixes = problemDescriptor.getFixes();
if (fixes != null && fixes.length > 0) {
for (int k = 0; k < problemDescriptor.getFixes().length; k++) {
QuickFixAction.registerQuickFixAction(highlightInfo, new QuickFixWrapper(problemDescriptor, k), options);
|
48,651 | onTotal++;
}
}
}
double offPrior = MathUtils.binomialProbability(offIsGenotypic, offTotal, p2off[genotypeIndex]);
<BUG>double onPrior = MathUtils.binomialProbability(onIsGenotypic, onTotal, p2on[genotypeIndex]);
likelihoods[genotypeIndex] = Math.log10(offPrior) + Math.log10(onPrior);
</BUG>
}
return likelihoods;
| double logOffPrior = MathUtils.compareDoubles(offPrior, 0.0, 1e-10) == 0 ? Math.log10(Double.MIN_VALUE) : Math.log10(offPrior);
double logOnPrior = MathUtils.compareDoubles(onPrior, 0.0, 1e-10) == 0 ? Math.log10(Double.MIN_VALUE) : Math.log10(onPrior);
likelihoods[genotypeIndex] += logOffPrior + logOnPrior;
|
48,652 | onTotal++;
}
}
}
double offPrior = MathUtils.binomialProbability(offIsGenotypic, offTotal, offNextBestBasePriors.get(genotypes[genotypeIndex]));
<BUG>double onPrior = MathUtils.binomialProbability(onIsGenotypic, onTotal, onNextBestBasePriors.get(genotypes[genotypeIndex]));
likelihoods[genotypeIndex] += Math.log10(offPr... | double logOffPrior = MathUtils.compareDoubles(offPrior, 0.0, 1e-10) == 0 ? Math.log10(Double.MIN_VALUE) : Math.log10(offPrior);
double logOnPrior = MathUtils.compareDoubles(onPrior, 0.0, 1e-10) == 0 ? Math.log10(Double.MIN_VALUE) : Math.log10(onPrior);
likelihoods[genotypeIndex] += logOffPrior + logOnPrior;
|
48,653 | Bundle savedInstanceState) {
final View rootView = inflater.inflate(R.layout.tab_qibla, container, false);
final QiblaCompassView qiblaCompassView = (QiblaCompassView)rootView.findViewById(R.id.qibla_compass);
qiblaCompassView.setConstants(((TextView)rootView.findViewById(R.id.bearing_north)), getText(R.string.bearing_... | sOrientationListener = new android.hardware.SensorListener() {
|
48,654 | parent = null;
}
@SubscribeEvent
public void onWorldRenderLast(RenderWorldLastEvent event) throws Throwable {
Minecraft mc = Minecraft.getMinecraft();
<BUG>if (mc.thePlayer != null && mc.objectMouseOver != null && !mc.thePlayer.isSneaking()) {
</BUG>
if (currentMultiblock != null) {
BlockPos anchorPos = anchor != null ... | if (mc.player != null && mc.objectMouseOver != null && !mc.player.isSneaking()) {
|
48,655 | </BUG>
if (currentMultiblock != null) {
BlockPos anchorPos = anchor != null ? anchor : mc.objectMouseOver.getBlockPos();
Multiblock mb = currentMultiblock.getForIndex(0);
for (MultiblockComponent comp : mb.getComponents()) {
<BUG>renderComponent(comp, anchorPos, event.getPartialTicks(), mc.thePlayer);
</BUG>
}
}
}
| parent = null;
@SubscribeEvent
public void onWorldRenderLast(RenderWorldLastEvent event) throws Throwable {
Minecraft mc = Minecraft.getMinecraft();
if (mc.player != null && mc.objectMouseOver != null && !mc.player.isSneaking()) {
renderComponent(comp, anchorPos, event.getPartialTicks(), mc.player);
|
48,656 | double dx = player.lastTickPosX + (player.posX - player.lastTickPosX) * partialTicks;
double dy = player.lastTickPosY + (player.posY - player.lastTickPosY) * partialTicks;
double dz = player.lastTickPosZ + (player.posZ - player.lastTickPosZ) * partialTicks;
BlockPos pos = anchor.add(comp.getRelativePosition());
Minecra... | World world = player.world;
minecraft.getTextureManager().bindTexture(TextureMap.LOCATION_BLOCKS_TEXTURE);
|
48,657 | if (maxSize > minSize)
{
size += rnd.nextInt(maxSize - minSize + 1);
}
ItemStack result = item.copy();
<BUG>result.stackSize = size;
return result;</BUG>
}
public ResourceLocation getLootTableList()
{
| result.func_190920_e(size);
return result;
|
48,658 | import reborncore.common.util.OreUtil;
import reborncore.common.util.RebornPermissions;
import reborncore.shields.RebornCoreShields;
import reborncore.shields.json.ShieldJsonLoader;
import java.io.IOException;
<BUG>@Mod(modid = RebornCore.MOD_ID, name = RebornCore.MOD_NAME, version = RebornCore.MOD_VERSION, acceptedMin... | @Mod(modid = RebornCore.MOD_ID, name = RebornCore.MOD_NAME, version = RebornCore.MOD_VERSION, acceptedMinecraftVersions = "[1.11]", dependencies = "required-after:forge@[12.18.2.2121,);")
|
48,659 | float factor = 0.05F;
entityItem.motionX = rand.nextGaussian() * factor;
entityItem.motionY = rand.nextGaussian() * factor + 0.2F;
entityItem.motionZ = rand.nextGaussian() * factor;
world.spawnEntityInWorld(entityItem);
<BUG>itemStack.stackSize = 0;
}</BUG>
}
@Override
public List<ItemStack> getDrops(IBlockAccess world... | itemStack.func_190920_e(0);
|
48,660 | if (liquid != null)
{
int qty = tank.fill(null, liquid, true);
if (qty != 0 && !entityplayer.capabilities.isCreativeMode)
{
<BUG>if (current.stackSize > 1)
{</BUG>
if (!entityplayer.inventory
.addItemStackToInventory(FluidContainerRegistry.drainFluidContainer(current)))
{
| if (current.func_190916_E() > 1)
|
48,661 | liquid = FluidContainerRegistry.getFluidForFilledItem(filled);
if (liquid != null)
{
if (!entityplayer.capabilities.isCreativeMode)
{
<BUG>if (current.stackSize > 1)
{</BUG>
if (!entityplayer.inventory.addItemStackToInventory(filled))
{
return false;
| if (current.func_190916_E() > 1)
|
48,662 | org.apache.jmeter.protocol.http.control.Header header
= (org.apache.jmeter.protocol.http.control.Header)
i.next().getObjectValue();
String n = header.getName();
if (! HEADER_CONTENT_LENGTH.equalsIgnoreCase(n)){
<BUG>String v = header.getValue();
request.addHeader(n, v);
}</BUG>
}
}
| if (HEADER_HOST.equalsIgnoreCase(n)) {
int port = url.getPort();
if (port != -1) {
if (port == url.getDefaultPort()) {
port = -1; // no need to specify the port if it is the default
|
48,663 | org.apache.jmeter.protocol.http.control.Header header
= (org.apache.jmeter.protocol.http.control.Header)
i.next().getObjectValue();
String n = header.getName();
if (! HEADER_CONTENT_LENGTH.equalsIgnoreCase(n)){
<BUG>String v = header.getValue();
method.addRequestHeader(n, v);
}</BUG>
}
}
| if (HEADER_HOST.equalsIgnoreCase(n)) {
method.getParams().setVirtualHost(v);
} else {
|
48,664 | import com.amazonaws.services.s3.model.ObjectMetadata;
import com.amazonaws.services.s3.model.PutObjectRequest;
import com.amazonaws.services.s3.model.S3ObjectSummary;
import com.amazonaws.services.s3.transfer.TransferManager;
import com.amazonaws.services.s3.transfer.TransferManagerConfiguration;
<BUG>import com.amazo... | import com.google.common.base.Preconditions;
import org.apache.commons.codec.digest.DigestUtils;
|
48,665 | protected MovedInHierarchy(Code moveUp, Code moveDown) {
this.moveUp = moveUp;
this.moveDown = moveDown;
}
protected void doVisit(@Nullable JavaModelElement oldEl, @Nullable JavaModelElement newEl) {
<BUG>if (oldEl == null || newEl == null) {
return;
}
if (oldEl.isInherited() == newEl.isInherited()) {
return;
}
if (!is... | [DELETED] |
48,666 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.METHOD);
}
@Override
protected void doVisitMethod(@Nullable JavaMethodElement oldMethod, @Nullable JavaMethodElement newMethod) {
<BUG>if (oldMethod == null || newMethod == null) {
return;
}
boolean onInterfaces = oldMethod.getParent().getDeclaringElement().ge... | if (!isBothAccessible(oldMethod, newMethod)) {
assert oldMethod != null;
assert newMethod != null;
boolean onInterfaces = oldMethod.getParent().getDeclaringElement().getKind() == ElementKind.INTERFACE
|
48,667 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.FIELD);
}
@Override
protected void doVisitField(JavaFieldElement oldField, JavaFieldElement newField) {
<BUG>if (!shouldCheck(oldField, newField)) {
</BUG>
return;
}
if (oldField.getDeclaringElement().getConstantValue() == null
| if (!isBothAccessible(oldField, newField)) {
|
48,668 | import org.revapi.java.spi.JavaAnnotationElement;
public final class Removed extends CheckBase {
@Override
protected List<Difference> doVisitAnnotation(JavaAnnotationElement oldAnnotation,
JavaAnnotationElement newAnnotation) {
<BUG>if (oldAnnotation != null && newAnnotation == null) {
return Collections.singletonList(... | if (oldAnnotation != null && newAnnotation == null && isAccessible(oldAnnotation.getParent())) {
return Collections.singletonList(
|
48,669 | import org.revapi.java.spi.Util;
public final class AttributeValueChanged extends CheckBase {
@Override
protected List<Difference> doVisitAnnotation(JavaAnnotationElement oldElement,
JavaAnnotationElement newElement) {
<BUG>if (oldElement == null || newElement == null) {
return null;</BUG>
}
AnnotationMirror oldAnnotat... | if (oldElement == null || newElement == null || !isAccessible(newElement.getParent())) {
return null;
|
48,670 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.FIELD);
}
@Override
protected void doVisitField(JavaFieldElement oldField, JavaFieldElement newField) {
<BUG>if (!shouldCheck(oldField, newField)) {
</BUG>
return;
}
String oldType = Util.toUniqueString(
| if (!isBothAccessible(oldField, newField)) {
|
48,671 | }
@Override
protected void doVisitClass(@Nullable JavaTypeElement oldType, @Nullable JavaTypeElement newType) {
if (!isBothAccessible(oldType, newType)) {
return;
<BUG>}
List<? extends TypeMirror> oldSuperTypes = getOldTypeEnvironment().getTypeUtils().directSupertypes(</BUG>
oldType.getModelRepresentation());
List<? ex... | assert oldType != null;
assert newType != null;
List<? extends TypeMirror> oldSuperTypes = getOldTypeEnvironment().getTypeUtils().directSupertypes(
|
48,672 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.FIELD);
}
@Override
protected void doVisitField(JavaFieldElement oldField, JavaFieldElement newField) {
<BUG>if (!shouldCheck(oldField, newField)) {
</BUG>
return;
}
Object oldC = oldField.getDeclaringElement().getConstantValue();
| if (!isBothAccessible(oldField, newField)) {
|
48,673 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.FIELD);
}
@Override
protected void doVisitField(JavaFieldElement oldField, JavaFieldElement newField) {
<BUG>if (oldField == null || newField == null) {
return;</BUG>
}
if (!SERIAL_VERSION_UID_FIELD_NAME.equals(oldField.getDeclaringElement().getSimpleName().to... | if (oldField == null || newField == null || !isAccessible(newField.getParent())) {
|
48,674 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.CLASS);
}
@Override
protected void doVisitClass(JavaTypeElement oldType, JavaTypeElement newType) {
<BUG>if (oldType == null || newType == null || isBothPrivate(oldType, newType)) {
return;</BUG>
}
List<? extends TypeMirror> newInterfaces = newType.getDeclarin... | if (!isBothAccessible(oldType, newType)) {
return;
|
48,675 | this.added = added;
this.code = code;
this.modifier = modifier;
}
protected final void doVisit(JavaModelElement oldElement, JavaModelElement newElement) {
<BUG>if (oldElement == null || newElement == null) {
return;
}
if (isBothPrivate(oldElement, newElement)) {
</BUG>
return;
| if (!isBothAccessible(oldElement, newElement)) {
|
48,676 | import org.revapi.java.spi.JavaAnnotationElement;
public final class Added extends CheckBase {
@Override
protected List<Difference> doVisitAnnotation(JavaAnnotationElement oldAnnotation,
JavaAnnotationElement newAnnotation) {
<BUG>if (oldAnnotation == null && newAnnotation != null) {
return Collections.singletonList(</... | if (oldAnnotation == null && newAnnotation != null && isAccessible(newAnnotation.getParent())) {
return Collections.singletonList(
|
48,677 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.FIELD);
}
@Override
protected void doVisitField(JavaFieldElement oldField, JavaFieldElement newField) {
<BUG>if (!shouldCheck(oldField, newField)) {
</BUG>
return;
}
if (oldField.getDeclaringElement().getConstantValue() != null
| if (!isBothAccessible(oldField, newField)) {
|
48,678 | }
@Override
protected void doVisitClass(@Nullable JavaTypeElement oldType, @Nullable JavaTypeElement newType) {
isEnumClass = newType != null && newType.getDeclaringElement().getKind() == ElementKind.ENUM;
}
<BUG>@Override
protected boolean shouldCheck(JavaFieldElement oldField, JavaFieldElement newField) {
return isE... | private boolean shouldCheck(JavaFieldElement oldField, JavaFieldElement newField) {
return isEnumClass && isBothAccessible(oldField, newField)
|
48,679 | public EnumSet<Type> getInterest() {
return EnumSet.of(Type.CLASS);
}
@Override
protected void doVisitClass(JavaTypeElement oldType, JavaTypeElement newType) {
<BUG>if (oldType == null || newType == null) {
return;</BUG>
}
List<TypeMirror> newInterfaces = Util.getAllSuperInterfaces(getNewTypeEnvironment().getTypeUtils(... | if (!isBothAccessible(oldType, newType)) {
return;
|
48,680 | import java.util.Map;
import java.util.Set;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.ConcurrentMap;
import java.util.concurrent.locks.ReadWriteLock;
<BUG>import java.util.concurrent.locks.ReentrantReadWriteLock;
import org.apache.lucene.index.IndexWriter;
import org.apache.lucene.index... | import org.apache.lucene.index.IndexReader;
import org.apache.lucene.search.Collector;
import org.apache.lucene.search.IndexSearcher;
|
48,681 | writer.deleteDocuments(query);
}
public void release(IndexSearcher searcher) throws IOException {
manager.release(searcher);
}
<BUG>public void addCacheEntry(BytesRef hash, QueryCacheEntry ce) {
queries.put(hash, ce);
}
public LiveIndexWriterConfig getConfig() {
return this.writer.getConfig();
}</BUG>
public static cla... | [DELETED] |
48,682 | public QueryCacheEntry(BytesRef hash, Query matchQuery, Map<String, String> metadata) {
this.hash = hash;
this.matchQuery = matchQuery;
this.metadata = metadata;
}
<BUG>}
public static class SearcherAndQueries {
public Map<BytesRef, QueryCacheEntry> queries;
public IndexSearcher searcher;
}
}
</BUG>
| [DELETED] |
48,683 | return matcher.getMatches();
}
public <T extends QueryMatch> Matches<T> match(InputDocument doc, MatcherFactory<T> factory) throws IOException {
return match(DocumentBatch.of(doc), factory);
}
<BUG>private static IndexSearcher getSearcher(WriterAndCache wacRef, MonitorQueryCollector collector) throws IOException {
fina... | [DELETED] |
48,684 | searcher = getSearcher(wac, collector);
Query query = presearcher.buildQuery(matcher.getIndexReader(), termFilters.get(searcher.getIndexReader()));
</BUG>
buildTime = (System.nanoTime() - buildTime) / 1000000;
<BUG>searcher.search(query, collector);
}
finally {
wac.release(searcher);</BUG>
}
| return matcher.getMatches();
public <T extends QueryMatch> Matches<T> match(InputDocument doc, MatcherFactory<T> factory) throws IOException {
return match(DocumentBatch.of(doc), factory);
private <T extends QueryMatch> void match(CandidateMatcher<T> matcher) throws IOException {
long buildTime = System.nanoTime();
Mat... |
48,685 | finally {
wac.release(searcher);</BUG>
}
matcher.finish(buildTime, collector.getQueryCount());
}
<BUG>public static void match(WriterAndCache wacRef, Query query, MonitorQueryCollector collector) throws IOException {
IndexSearcher searcher = null;
try {
searcher = getSearcher(wacRef, collector);
searcher.search(query, ... | return matcher.getMatches();
public <T extends QueryMatch> Matches<T> match(InputDocument doc, MatcherFactory<T> factory) throws IOException {
return match(DocumentBatch.of(doc), factory);
private <T extends QueryMatch> void match(CandidateMatcher<T> matcher) throws IOException {
long buildTime = System.nanoTime();
Mat... |
48,686 | catch (Exception e) {
matcher.reportError(new MatchError(queryId, e));
}
}
}
<BUG>public static abstract class MonitorQueryCollector extends SimpleCollector {
</BUG>
protected BinaryDocValues hashDV;
protected SortedDocValues idDV;
protected BinaryDocValues mqDV;
| public static abstract class MonitorQueryCollector extends SimpleCollector implements WriterAndCache.WithQueryMap {
|
48,687 | private LocalBroadcastManager mLocalBroadcastManager;
private String mActiveDownloadUrlString;
@Override
protected void onCreate(Bundle savedInstanceState) {
super.onCreate(savedInstanceState);
<BUG>setContentView(R.layout.activity_app_details2);
Toolbar toolbar = (Toolbar) findViewById(R.id.toolbar);</BUG>
toolbar.set... | setContentView(R.layout.app_details2);
Toolbar toolbar = (Toolbar) findViewById(R.id.toolbar);
|
48,688 | .inflate(R.layout.app_details2_screenshots, parent, false);
return new ScreenShotsViewHolder(view);
} else if (viewType == VIEWTYPE_WHATS_NEW) {
View view = LayoutInflater.from(parent.getContext())
.inflate(R.layout.app_details2_whatsnew, parent, false);
<BUG>return new WhatsNewViewHolder(view);
} else if (viewType == ... | } else if (viewType == VIEWTYPE_DONATE) {
.inflate(R.layout.app_details2_donate, parent, false);
return new DonateViewHolder(view);
} else if (viewType == VIEWTYPE_LINKS) {
|
48,689 | import com.liferay.portal.service.UserLocalServiceUtil;
import com.liferay.portal.util.GroupTestUtil;
import com.liferay.portal.util.PortalUtil;
import com.liferay.portal.util.UserTestUtil;
import com.liferay.portlet.asset.model.AssetEntry;
<BUG>import com.liferay.portlet.asset.service.AssetEntryLocalServiceUtil;
impor... | import com.liferay.portlet.social.util.SocialActivityHierarchyThreadLocal;
import com.liferay.portlet.social.util.SocialActivityTestUtil;
|
48,690 | package com.liferay.portlet.social.service;
import com.liferay.portal.kernel.test.ExecutionTestListeners;
import com.liferay.portal.test.EnvironmentExecutionTestListener;
<BUG>import com.liferay.portal.test.LiferayIntegrationJUnitTestRunner;
import com.liferay.portal.test.TransactionalExecutionTestListener;
</BUG>
impo... | import com.liferay.portal.test.Sync;
import com.liferay.portal.test.SynchronousDestinationExecutionTestListener;
|
48,691 | import org.junit.Test;
import org.junit.runner.RunWith;
@ExecutionTestListeners(
listeners = {
EnvironmentExecutionTestListener.class,
<BUG>TransactionalExecutionTestListener.class
})
@RunWith(LiferayIntegrationJUnitTestRunner.class)
public class SocialActivityCounterLocalServiceTest</BUG>
extends BaseSocialActivityTes... | SynchronousDestinationExecutionTestListener.class
@Sync
public class SocialActivityCounterLocalServiceTest
|
48,692 | <BUG>package com.liferay.portlet.social.util;
import com.liferay.portal.model.Group;
import com.liferay.portal.model.User;
import com.liferay.portal.util.PortalUtil;</BUG>
import com.liferay.portlet.asset.model.AssetEntry;
| import com.liferay.portal.kernel.json.JSONFactoryUtil;
import com.liferay.portal.kernel.json.JSONObject;
import com.liferay.portal.kernel.util.StringPool;
import com.liferay.portal.service.ServiceTestUtil;
import com.liferay.portal.util.PortalUtil;
|
48,693 | if (name.equals(SocialActivityCounterConstants.NAME_CONTRIBUTION)) {
ownerType = SocialActivityCounterConstants.TYPE_CREATOR;
}
return
SocialActivityCounterLocalServiceUtil.fetchLatestActivityCounter(
<BUG>groupId, classNameId, classPk, name, ownerType);
</BUG>
}
public static SocialActivityLimit getActivityLimit(
long... | groupId, classNameId, classPK, name, ownerType);
|
48,694 | import org.jitsi.impl.neomedia.device.*;
import org.jitsi.service.resources.*;
import org.osgi.framework.*;
public class AudioDeviceConfigurationListener
extends AbstractDeviceConfigurationListener
<BUG>{
public AudioDeviceConfigurationListener(</BUG>
ConfigurationForm configurationForm)
{
super(configurationForm);
| private CaptureDeviceInfo captureDevice = null;
private CaptureDeviceInfo playbackDevice = null;
private CaptureDeviceInfo notificationDevice = null;
public AudioDeviceConfigurationListener(
|
48,695 | ResourceManagementService resources
= NeomediaActivator.getResources();
notificationService.fireNotification(
popUpEvent,
title,
<BUG>device.getName()
+ "\r\n"
</BUG>
+ resources.getI18NString(
"impl.media.configform"
| body
+ "\r\n\r\n"
|
48,696 | public boolean canChoose(UUID sourceControllerId, Game game) {
int count = 0;
for (StackObject stackObject: game.getStack()) {
if (game.getPlayer(sourceControllerId).getInRange().contains(stackObject.getControllerId()) && filter.match(stackObject, game)) {
count++;
<BUG>if (count >= this.minNumberOfTargets)
return tru... | if (count >= this.minNumberOfTargets) {
|
48,697 | public Set<UUID> possibleTargets(UUID sourceId, UUID sourceControllerId, Game game) {
return possibleTargets(sourceControllerId, game);
}
@Override
public Set<UUID> possibleTargets(UUID sourceControllerId, Game game) {
<BUG>Set<UUID> possibleTargets = new HashSet<UUID>();
for (StackObject stackObject: game.getStack()) ... | Set<UUID> possibleTargets = new HashSet<>();
for (StackObject stackObject: game.getStack()) {
|
48,698 | public Set<UUID> possibleTargets(UUID sourceId, UUID sourceControllerId, Game game) {
return possibleTargets(sourceControllerId, game);
}
@Override
public Set<UUID> possibleTargets(UUID sourceControllerId, Game game) {
<BUG>Set<UUID> possibleTargets = new HashSet<UUID>();
for (StackObject stackObject : game.getStack()... | Set<UUID> possibleTargets = new HashSet<>();
for (StackObject stackObject : game.getStack()) {
|
48,699 | import mage.filter.FilterCard;
import mage.game.Game;
import mage.players.Player;
import java.util.HashSet;
import java.util.Set;
<BUG>import java.util.UUID;
public class TargetCard extends TargetObject {</BUG>
protected FilterCard filter;
protected TargetCard(Zone zone) {
this(1, 1, zone, new FilterCard());
| import mage.game.events.GameEvent;
public class TargetCard extends TargetObject {
|
48,700 | @Override
public FilterCard getFilter() {
return this.filter;
}
@Override
<BUG>public boolean canChoose(UUID sourceId, UUID sourceControllerId, Game game) {
for (UUID playerId: game.getPlayer(sourceControllerId).getInRange()) {</BUG>
Player player = game.getPlayer(playerId);
if (player != null) {
switch (zone) {
| int possibleTargets = 0;
for (UUID playerId: game.getPlayer(sourceControllerId).getInRange()) {
|
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