keyword stringclasses 7
values | repo_name stringlengths 8 98 | file_path stringlengths 4 244 | file_extension stringclasses 29
values | file_size int64 0 84.1M | line_count int64 0 1.6M | content stringlengths 1 84.1M ⌀ | language stringclasses 14
values |
|---|---|---|---|---|---|---|---|
3D | febiosoftware/FEBio | FEBioMix/FESupplyBinding.h | .h | 2,759 | 75 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicSoluteAnalysis.h | .h | 1,565 | 43 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEInitialConcentration.h | .h | 1,595 | 43 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2020 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEPressureStabilization.cpp | .cpp | 5,118 | 157 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicSoluteDomain.cpp | .cpp | 1,737 | 43 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasic.h | .h | 7,645 | 204 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEMultiphasic.h | .h | 11,669 | 294 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicShellDomain.cpp | .cpp | 42,608 | 1,242 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEOsmoticCoefficient.cpp | .cpp | 1,331 | 31 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESFDSBM.cpp | .cpp | 12,700 | 496 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESolutePointSource.cpp | .cpp | 15,762 | 525 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESlidingInterface2.cpp | .cpp | 56,214 | 1,928 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESolventSupplyStarling.cpp | .cpp | 3,792 | 115 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEPorousNeoHookean.h | .h | 2,707 | 69 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEReactionRateConst.cpp | .cpp | 1,525 | 36 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEMichaelisMenten.cpp | .cpp | 5,286 | 172 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FETiedBiphasicInterface.h | .h | 5,544 | 170 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FETiedMultiphasicInterface.h | .h | 6,560 | 185 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEMultiphasicAnalysis.cpp | .cpp | 1,694 | 38 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEMatchingOsmoticCoefficientBC.cpp | .cpp | 5,866 | 161 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESolubConst.h | .h | 2,520 | 65 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEPermConstIso.cpp | .cpp | 2,190 | 61 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEBioMix.h | .h | 1,751 | 49 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEFixedFluidPressure.cpp | .cpp | 1,619 | 43 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2020 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEMassActionReversibleEffective.cpp | .cpp | 6,770 | 200 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEInitialConcentration.cpp | .cpp | 2,097 | 47 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2020 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FESupplyConst.cpp | .cpp | 3,420 | 106 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicSolidDomain.cpp | .cpp | 40,063 | 1,253 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicSolidDomain.h | .h | 6,262 | 153 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FESlidingInterfaceBiphasic.cpp | .cpp | 100,807 | 2,611 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioMix/FEMembraneReactionRateConst.h | .h | 2,710 | 62 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FESupplyConst.h | .h | 2,515 | 71 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEBiphasicSolver.h | .h | 4,769 | 153 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioMix/FEActiveConstantSupply.h | .h | 1,953 | 53 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/ImageMap.cpp | .cpp | 12,377 | 414 | //#include "stdafx.h"
#include "ImageMap.h"
#include "math.h"
#include "algorithm"
#include "iostream"
ImageMap::ImageMap(Image& img) : m_img(img)
{
m_r0 = vec3d(0,0,0);
m_r1 = vec3d(0,0,0);
}
ImageMap::~ImageMap(void)
{
}
void ImageMap::SetRange(vec3d r0, vec3d r1)
{
m_r0 = r0;
m_r1 = r1;
}
ImageMap::POINT Ima... | C++ |
3D | febiosoftware/FEBio | FEImgLib/FEImageValuator.h | .h | 1,797 | 54 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/FEImageSource.h | .h | 2,663 | 96 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/FEImageDataMap.cpp | .cpp | 2,901 | 102 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEImgLib/FEImageSource.cpp | .cpp | 6,360 | 250 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEImgLib/ImageFilter.cpp | .cpp | 6,787 | 261 | #include "Image.h"
#include "ImageFilter.h"
#include <FECore/log.h>
#include <vector>
#include "image_tools.h"
#ifdef HAVE_FFTW
#include <fftw3.h>
#endif // HAVE_FFTW
ImageFilter::ImageFilter(FEModel* fem) : FECoreClass(fem)
{
}
//=====================================================================================... | C++ |
3D | febiosoftware/FEBio | FEImgLib/image_tools.h | .h | 941 | 29 | #pragma once
#include <FECore/FECoreClass.h>
#include "feimglib_api.h"
class Image;
// iterative stencil-based blur
enum class BlurMethod
{
BLUR_AVERAGE,
BLUR_FFT,
};
FEIMGLIB_API void blur_image_2d(Image& trg, Image& src, float d, BlurMethod blurMethod = BlurMethod::BLUR_AVERAGE);
FEIMGLIB_API void blur_image_3d(... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/Image.h | .h | 2,446 | 79 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/Image.cpp | .cpp | 4,101 | 135 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEImgLib/image_tools.cpp | .cpp | 13,033 | 467 | #include "image_tools.h"
#include "Image.h"
#include <math.h>
#include <iostream>
#ifdef HAVE_MKL
#include <mkl.h>
#endif
#ifdef HAVE_FFTW
#include <fftw3.h>
#endif // HAVE_FFTW
void blur_avg_2d(Image& trg, Image& src, float d)
{
if (d <= 0) { trg = src; return; }
int n = (int)d;
float w = d - (float)n;
int nx... | C++ |
3D | febiosoftware/FEBio | FEImgLib/ImageFilter.h | .h | 2,296 | 101 | #pragma once
#include "Image.h"
#include <FECore/FECoreClass.h>
#include <FECore/mat3d.h>
#include "feimglib_api.h"
#include "image_tools.h"
#ifdef HAVE_FFTW
#include <fftw3.h>
#endif // HAVE_FFTW
class FEIMGLIB_API ImageFilter : public FECoreClass
{
FECORE_BASE_CLASS(ImageFilter)
public:
//! default constructor
... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/FEImageValuator.cpp | .cpp | 2,080 | 61 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEImgLib/FEImgLib.cpp | .cpp | 645 | 27 | #include "FEImgLib.h"
#include <FECore/FECoreKernel.h>
#include "FEImageSource.h"
#include "FEImageDataMap.h"
#include "FEImageValuator.h"
#include "ImageFilter.h"
void FEImgLib::InitModule()
{
// image sources
REGISTER_FECORE_CLASS(FERawImage, "raw");
REGISTER_FECORE_CLASS(FENRRDImage, "nrrd");
// data maps
REG... | C++ |
3D | febiosoftware/FEBio | FEImgLib/FEImgLib.h | .h | 1,370 | 33 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/feimglib_api.h | .h | 1,531 | 44 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/fft.cpp | .cpp | 5,043 | 106 | #ifdef HAVE_MKL
#include <mkl.h>
#include <complex>
//---------------------------------------------------------------------------------------
// calculate the DFT of a source image x. The source image is assumed to be stored
// in row-major order, indexed by (x,y), where x is the column index, and y the row index.
//... | C++ |
3D | febiosoftware/FEBio | FEImgLib/FEImageDataMap.h | .h | 1,830 | 62 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEImgLib/ImageMap.h | .h | 1,398 | 62 | #pragma once
#include "Image.h"
#include <FECore/vec3d.h>
#include <FECore/mat3d.h>
#include "feimglib_api.h"
class FEIMGLIB_API ImageMap
{
public:
struct POINT
{
int i, j, k;
double h[8];
};
public:
ImageMap(Image& img);
~ImageMap(void);
void SetRange(vec3d r0, vec3d r1);
// map a vector to the image d... | Unknown |
3D | febiosoftware/FEBio | ci/gather-plugins.py | .py | 1,971 | 64 | import os, shutil, json
os.mkdir("plugins")
for dirName in os.listdir("pluginRepos"):
dirPath = os.path.join("pluginRepos", dirName)
if os.path.isdir(dirPath):
newDir = os.path.join("plugins", dirName)
os.mkdir(newDir)
for root, dirs, files in os.walk(dirPath, followlinks=True):
... | Python |
3D | febiosoftware/FEBio | ci/repo-plugins.py | .py | 807 | 27 | import os, json
HOMEPATH = "/root"
try:
with open("plugins/versions.json", "r") as file:
versionInfo = json.load(file)
febioVersion = versionInfo["febio"]
del versionInfo["febio"]
platform = os.environ["OS"]
if platform == "Windows":
osFlag = "-w"
elif platform == "macOS":
... | Python |
3D | febiosoftware/FEBio | ci/Linux/build.sh | .sh | 380 | 18 | #! /bin/bash
# Uncomment next line if not global on target machine
set -e
#git config --global --add safe.directory /FEBio
source "/opt/intel/oneapi/setvars.sh" --force
cmake . -B cmbuild -LA \
-DSET_DEVCOMMIT=ON \
-DUSE_FFTW=ON \
-DUSE_HYPRE=ON \
-DUSE_LEVMAR=ON \
-DUSE_MKL=ON \
-DUSE_MMG=ON \
-DUSE_STATIC_STDL... | Shell |
3D | febiosoftware/FEBio | ci/Linux/create-sdk.sh | .sh | 1,038 | 53 | #! /bin/bash
set -e
TARGET_DIR="${TARGET_DIR:-febio4-sdk}"
FEBIO_REPO="${FEBIO_REPO:-.}"
mkdir -p ${TARGET_DIR}/{include,lib}
# Copy in FEBioConfig.cmake
mkdir -p ${TARGET_DIR}/lib/cmake/FEBio
cp $FEBIO_REPO/FEBioConfig.cmake ${TARGET_DIR}/lib/cmake/FEBio
sdkDirs=(
FECore
FEBioMech
FEBioMix
FEBioFluid... | Shell |
3D | febiosoftware/FEBio | ci/Linux/publish-to-s3.sh | .sh | 149 | 6 | #! /bin/bash
set -e
chmod +x artifacts/febio4/bin/febio4
ci/common/publish-to-s3.sh artifacts/febio4
ci/common/publish-to-s3.sh artifacts/febio4-sdk
| Shell |
3D | febiosoftware/FEBio | ci/Linux/publish-docker-images.sh | .sh | 145 | 4 | #! /bin/bash
docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG -f infrastructure/DockerfileRuntime .
docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG
| Shell |
3D | febiosoftware/FEBio | ci/Linux/scp-to-repo.sh | .sh | 523 | 23 | #! /bin/bash
REMOTE_PATH="update2/FEBioStudio2Dev/Linux/stage"
if [ $# == 1 ] && [ "$1" != "develop" ]; then
REMOTE_PATH="update2/FEBioStudio2Dev/branches/$1/Linux/stage"
fi
set -e
scp cmbuild/bin/* repo:~/$REMOTE_PATH/bin
scp cmbuild/lib/* repo:~/$REMOTE_PATH/lib
ssh repo "chmod +x $REMOTE_PATH/bin/febio4"
# p... | Shell |
3D | febiosoftware/FEBio | ci/Linux/test.sh | .sh | 630 | 28 | #! /bin/bash
# Uncomment next line if not global on target machine
set -e
FEBIO_XML=$(realpath ./ci/febio.xml)
PLUGIN_DIR=$(realpath ./plugins)
FEBIO_DIR=$(realpath ./cmbuild/bin)
FEBIO_LIB=$(realpath ./cmbuild/lib)
FEBIO_BIN="${FEBIO_DIR}/febio4"
chmod +x $FEBIO_BIN
# Copy the plugins from their subdirectories direc... | Shell |
3D | febiosoftware/FEBio | ci/macOS/cmake.sh | .sh | 298 | 12 | cmake . -B cmbuild -L \
-DCMAKE_OSX_ARCHITECTURES="x86_64" \
-DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 \
-DSET_DEVCOMMIT=ON \
-DUSE_FFTW=ON \
-DUSE_HYPRE=ON \
-DUSE_LEVMAR=ON \
-DUSE_MKL=ON \
-DUSE_MMG=ON \
-DUSE_ZLIB=ON \
-DOMP_INC=/Users/gitRunner/local/x86_64/homebrew/opt/libomp/include
| Shell |
3D | febiosoftware/FEBio | ci/macOS/build.sh | .sh | 237 | 10 | #! /bin/bash
# Uncomment next line if not global on target machine
# git config --global --add safe.directory /FEBio
source "/opt/intel/oneapi/setvars.sh" --force
. $(dirname $0)/cmake.sh
pushd cmbuild
make -j $(sysctl -n hw.ncpu)
popd
| Shell |
3D | febiosoftware/FEBio | ci/macOS/create-sdk.sh | .sh | 1,070 | 52 | #! /bin/bash
set -e
TARGET_DIR="${TARGET_DIR:-febio4-sdk}"
FEBIO_REPO="${FEBIO_REPO:-.}"
mkdir -p ${TARGET_DIR}/{include,lib}
# Copy in FEBioConfig.cmake
mkdir -p ${TARGET_DIR}/lib/cmake/FEBio
cp $FEBIO_REPO/FEBioConfig.cmake ${TARGET_DIR}/lib/cmake/FEBio
sdkDirs=(
FECore
FEBioMech
FEBioMix
FEBioFluid... | Shell |
3D | febiosoftware/FEBio | ci/macOS/publish-to-s3.sh | .sh | 143 | 6 | #! /bin/bash
chmod +x artifacts/febio4/bin/febio4
ci/common/publish-to-s3.sh artifacts/febio4
ci/common/publish-to-s3.sh artifacts/febio4-sdk
| Shell |
3D | febiosoftware/FEBio | ci/macOS/publish-docker-images.sh | .sh | 145 | 4 | #! /bin/bash
docker build -t $REGISTRY/$REPOSITORY:$IMAGE_TAG -f infrastructure/DockerfileRuntime .
docker push $REGISTRY/$REPOSITORY:$IMAGE_TAG
| Shell |
3D | febiosoftware/FEBio | ci/macOS/scp-to-repo.sh | .sh | 601 | 21 | #! /bin/bash
REMOTE_PATH="update2/FEBioStudio2Dev/macOS/stage"
if [ $# == 1 ] && [ "$1" != "develop" ]; then
REMOTE_PATH="update2/FEBioStudio2Dev/branches/$1/macOS/stage"
fi
scp cmbuild/bin/* repo:~/$REMOTE_PATH/FEBioStudio.app/Contents/MacOS
scp cmbuild/lib/* repo:~/$REMOTE_PATH/FEBioStudio.app/Contents/Framewor... | Shell |
3D | febiosoftware/FEBio | ci/macOS/test.sh | .sh | 614 | 25 | #! /bin/bash
# Uncomment next line if not global on target machine
set -e
FEBIO_XML=$(realpath ./ci/febio.xml)
PLUGIN_DIR=$(realpath ./plugins)
FEBIO_DIR=$(realpath ./cmbuild/bin)
FEBIO_LIB=$(realpath ./cmbuild/lib)
FEBIO_BIN="${FEBIO_DIR}/febio4"
chmod +x $FEBIO_BIN
# Copy the plugins from their subdirectories direc... | Shell |
3D | febiosoftware/FEBio | ci/Windows/create-sdk.sh | .sh | 1,079 | 43 | #! /bin/bash
set -e
TARGET_DIR="${TARGET_DIR:-febio4-sdk}"
FEBIO_REPO="${FEBIO_REPO:-.}"
mkdir -p ${TARGET_DIR}/{include,lib,bin}
mkdir ${TARGET_DIR}/lib/{Release,Debug}
mkdir ${TARGET_DIR}/bin/Debug
# Copy in FEBioConfig.cmake
mkdir -p ${TARGET_DIR}/lib/cmake/FEBio
cp $FEBIO_REPO/FEBioConfig.cmake ${TARGET_DIR}/lib/c... | Shell |
3D | febiosoftware/FEBio | ci/Windows/publish-to-s3.sh | .sh | 106 | 5 | #! /bin/bash
ci/common/publish-to-s3.sh artifacts/febio4
ci/common/publish-to-s3.sh artifacts/febio4-sdk
| Shell |
3D | febiosoftware/FEBio | ci/Windows/scp-to-repo.sh | .sh | 462 | 20 | #! /bin/bash
REMOTE_PATH="update2/FEBioStudio2Dev/Windows/stage"
if [ $# == 1 ] && [ "$1" != "develop" ]; then
REMOTE_PATH="update2/FEBioStudio2Dev/branches/$1/Windows/stage"
fi
scp cmbuild/bin/Release/* repo:~/$REMOTE_PATH/bin
# package and upload sdk
pushd sdk
zip -r sdk.zip include
zip -r sdk.zip lib
zip -r s... | Shell |
3D | febiosoftware/FEBio | ci/Windows/test.sh | .sh | 1,228 | 39 | #! /usr/bin/bash
# Uncomment next line if not global on target machine
set -e
set -x
FEBIO_XML=$(realpath ./ci/febio.xml)
PLUGIN_DIR=$(realpath ./plugins)
FEBIO_DIR=$(realpath ./cmbuild/bin/Release)
FEBIO_LIB=$(realpath ./cmbuild/bin/Release)
FEBIO_BIN="${FEBIO_DIR}/febio4.exe"
# Convert plugin dir to Windows style
PL... | Shell |
3D | febiosoftware/FEBio | FEBioLib/FEBioRestart.cpp | .cpp | 4,292 | 129 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/LogFileStream.cpp | .cpp | 2,605 | 88 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/plugin.h | .h | 3,674 | 143 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/LogStream.h | .h | 1,732 | 49 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/Logfile.cpp | .cpp | 5,173 | 193 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/plugin.cpp | .cpp | 11,885 | 399 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/hello.cpp | .cpp | 3,407 | 66 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/targetver.h | .h | 2,029 | 42 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/febiolib_api.h | .h | 1,531 | 44 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/cmdoptions.cpp | .cpp | 7,784 | 296 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/cmdoptions.h | .h | 2,815 | 88 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/stdafx.h | .h | 1,492 | 39 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/input.cpp | .cpp | 18,590 | 587 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/config.cpp | .cpp | 15,591 | 607 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/febio.h | .h | 3,370 | 95 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/LogStream.cpp | .cpp | 1,607 | 47 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/FEBox.cpp | .cpp | 3,257 | 119 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/FEBioModel.cpp | .cpp | 61,476 | 1,992 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/febiolib.cpp | .cpp | 3,089 | 97 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/FEBioStdSolver.h | .h | 2,453 | 75 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/febiolib_types.h | .h | 2,132 | 60 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/Logfile.h | .h | 3,078 | 105 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/FEBioConfig.h | .h | 1,593 | 46 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/getapppath.cpp | .cpp | 4,118 | 131 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/memory.cpp | .cpp | 1,643 | 44 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/FEBioModel.h | .h | 7,257 | 265 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | Unknown |
3D | febiosoftware/FEBio | FEBioLib/FEBioStdSolver.cpp | .cpp | 3,794 | 124 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/FEBioModelBuilder.cpp | .cpp | 3,856 | 119 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2020 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
3D | febiosoftware/FEBio | FEBioLib/stdafx.cpp | .cpp | 1,385 | 33 | /*This file is part of the FEBio source code and is licensed under the MIT license
listed below.
See Copyright-FEBio.txt for details.
Copyright (c) 2021 University of Utah, The Trustees of Columbia University in
the City of New York, and others.
Permission is hereby granted, free of charge, to any person obtaining a... | C++ |
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