keyword stringclasses 7
values | repo_name stringlengths 8 98 | file_path stringlengths 4 244 | file_extension stringclasses 29
values | file_size int64 0 84.1M | line_count int64 0 1.6M | content stringlengths 1 84.1M ⌀ | language stringclasses 14
values |
|---|---|---|---|---|---|---|---|
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/math/gaussian/sum.h | .h | 6,375 | 234 | #ifndef SCITBX_MATH_GAUSSIAN_SUM_H
#define SCITBX_MATH_GAUSSIAN_SUM_H
#ifndef SCITBX_MATH_GAUSSIAN_SUM_MAX_N_TERMS
#define SCITBX_MATH_GAUSSIAN_SUM_MAX_N_TERMS 10
#endif
#include <scitbx/math/gaussian/term.h>
#include <scitbx/array_family/small.h>
#include <scitbx/array_family/shared.h>
#include <scitbx/error.h>
nam... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/math/erf/constants.h | .h | 2,494 | 80 | #ifndef SCITBX_MATH_ERF_CONSTANTS_H
#define SCITBX_MATH_ERF_CONSTANTS_H
#include <cstddef>
namespace scitbx { namespace math {
//! Port of http://www.netlib.org/specfun/erf (as of 2003 Dec 03).
namespace erf_constants {
//! Port of http://www.netlib.org/specfun/erf (as of 2003 Dec 03).
/*! From the FORTRAN docu... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/math/erf/engine.h | .h | 6,740 | 188 | #ifndef SCITBX_MATH_ERF_ENGINE_H
#define SCITBX_MATH_ERF_ENGINE_H
#include <scitbx/math/erf/constants.h>
#include <cmath>
namespace scitbx { namespace math {
//! Port of http://www.netlib.org/specfun/erf (as of 2003 Dec 03).
/*! From the FORTRAN documentation:
<pre>
This packet evaluates erf(x), erfc(x), and ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/fftpack/factorization.h | .h | 2,249 | 79 | #ifndef SCITBX_FFTPACK_FACTORIZATION_H
#define SCITBX_FFTPACK_FACTORIZATION_H
#include <scitbx/array_family/tiny_types.h>
#include <scitbx/array_family/ref.h>
#include <scitbx/array_family/shared.h>
namespace scitbx { namespace fftpack {
/*! \brief Determination of prime factors for both complex-to-complex
... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/fftpack/complex_to_complex_3d.h | .h | 6,345 | 194 | #ifndef SCITBX_FFTPACK_COMPLEX_TO_COMPLEX_3D_H
#define SCITBX_FFTPACK_COMPLEX_TO_COMPLEX_3D_H
#include <scitbx/fftpack/complex_to_complex.h>
#include <scitbx/error.h>
#include <omptbx/omp_or_stubs.h>
//#define SCITBX_FFTPACK_COMPLEX_TO_COMPLEX_3D_NO_PRAGMA_OMP
namespace scitbx { namespace fftpack {
//! 3-dimensio... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/fftpack/complex_to_complex.h | .h | 25,010 | 753 | #ifndef SCITBX_FFTPACK_COMPLEX_TO_COMPLEX_H
#define SCITBX_FFTPACK_COMPLEX_TO_COMPLEX_H
#include <scitbx/fftpack/factorization.h>
#include <scitbx/fftpack/detail/ref.h>
#include <scitbx/array_family/shared.h>
#include <scitbx/auto_array.h>
#include <algorithm>
#include <complex>
#include <cmath>
namespace scitbx {
/... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/fftpack/detail/ref.h | .h | 1,113 | 50 | #ifndef SCITBX_FFTPACK_DETAIL_REF_H
#define SCITBX_FFTPACK_DETAIL_REF_H
namespace scitbx { namespace fftpack { namespace detail {
template <class ElementType>
class ref_2d_tp
{
public:
ref_2d_tp(ElementType* Start,
std::size_t nx,
std::size_t)
: start_(Start),
... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/ref.h | .h | 15,046 | 516 | #ifndef SCITBX_ARRAY_FAMILY_REF_H
#define SCITBX_ARRAY_FAMILY_REF_H
#include <scitbx/error.h>
#include <scitbx/math/traits.h>
#include <scitbx/array_family/error.h>
#include <scitbx/array_family/accessors/trivial.h>
#include <scitbx/array_family/detail/ref_helpers.h>
#include <algorithm>
#include <boost/scoped_array.h... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny_algebra.h | .h | 55,109 | 1,839 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_algebras
*/
#ifndef SCITBX_ARRAY_FAMILY_TINY_ALGEBRA_H
#define SCITBX_ARRAY_F... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny.h | .h | 1,013 | 39 | #ifndef SCITBX_ARRAY_FAMILY_TINY_H
#define SCITBX_ARRAY_FAMILY_TINY_H
#include <scitbx/array_family/tiny_plain.h>
#include <scitbx/array_family/ref_reductions.h>
namespace scitbx { namespace af {
// Automatic allocation, fixed size, standard operators.
template <typename ElementType, std::size_t N>
class tiny ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/versa_plain.h | .h | 7,354 | 248 | #ifndef SCITBX_ARRAY_FAMILY_VERSA_PLAIN_H
#define SCITBX_ARRAY_FAMILY_VERSA_PLAIN_H
#include <scitbx/error.h>
#include <scitbx/array_family/shared_plain.h>
namespace scitbx { namespace af {
template <typename ElementType,
typename AccessorType = trivial_accessor>
class versa_plain : public shared_pla... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/array_adaptor.h | .h | 761 | 39 | #ifndef SCITBX_ARRAY_FAMILY_ARRAY_ADAPTOR_H
#define SCITBX_ARRAY_FAMILY_ARRAY_ADAPTOR_H
namespace scitbx { namespace af {
template <typename T>
struct array_adaptor
{
const T* pointee;
array_adaptor(T const& a) : pointee(&a) {}
};
template <typename T>
inline
array_adaptor<T>
adapt(T const& a... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/ref_reductions.h | .h | 14,796 | 522 | #ifndef SCITBX_ARRAY_FAMILY_REDUCTIONS_H
#define SCITBX_ARRAY_FAMILY_REDUCTIONS_H
#include <scitbx/error.h>
#include <scitbx/math/approx_equal.h>
#include <scitbx/array_family/ref.h>
#include <scitbx/array_family/misc_functions.h>
#include <boost/optional.hpp>
#include <complex>
namespace scitbx { namespace af {
t... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny_mat_ref.h | .h | 640 | 25 | #include <scitbx/array_family/ref.h>
#include <scitbx/array_family/accessors/mat_grid.h>
namespace scitbx { namespace af {
template <typename ElementType, int Rows, int Cols>
class tiny_mat_ref : public ref<ElementType, mat_grid>
{
public:
tiny_mat_ref(ElementType *storage)
: ref<ElementType, mat_grid... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/small_reductions.h | .h | 3,714 | 156 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_reductions
*/
#ifndef SCITBX_ARRAY_FAMILY_SMALL_REDUCTIONS_H
#define SCITBX_A... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/versa.h | .h | 4,381 | 171 | #ifndef SCITBX_ARRAY_FAMILY_VERSA_H
#define SCITBX_ARRAY_FAMILY_VERSA_H
#include <scitbx/array_family/versa_plain.h>
#include <scitbx/array_family/ref_reductions.h>
namespace scitbx { namespace af {
template <typename ElementType,
typename AccessorType = trivial_accessor>
class versa : public versa_p... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/small_plain.h | .h | 4,156 | 154 | #ifndef SCITBX_ARRAY_FAMILY_SMALL_PLAIN_H
#define SCITBX_ARRAY_FAMILY_SMALL_PLAIN_H
#include <scitbx/array_family/tiny.h>
#include <scitbx/array_family/detail/auto_allocator.h>
namespace scitbx { namespace af {
// Automatic allocation, variable size.
template <typename ElementType, std::size_t N>
class small_p... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/type_traits.h | .h | 1,431 | 71 | #ifndef SCITBX_ARRAY_FAMILY_TYPE_TRAITS_H
#define SCITBX_ARRAY_FAMILY_TYPE_TRAITS_H
namespace scitbx { namespace af {
struct false_type {};
struct true_type {};
}}
#include <boost/config.hpp>
#if defined(BOOST_NO_TEMPLATE_PARTIAL_SPECIALIZATION)
#define SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/small.h | .h | 1,599 | 65 | #ifndef SCITBX_ARRAY_FAMILY_SMALL_H
#define SCITBX_ARRAY_FAMILY_SMALL_H
#include <scitbx/array_family/small_plain.h>
#include <scitbx/array_family/ref_reductions.h>
namespace scitbx { namespace af {
// Automatic allocation, fixed size, standard operators.
template <typename ElementType, std::size_t N>
class sm... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/misc_functions.h | .h | 3,587 | 150 | #ifndef SCITBX_ARRAY_FAMILY_MISC_FUNCTIONS_H
#define SCITBX_ARRAY_FAMILY_MISC_FUNCTIONS_H
#include <boost/type_traits/is_unsigned.hpp>
#include <cmath>
#include <cstdlib>
namespace scitbx { namespace fn {
namespace details {
template <typename NumType>
class absolute
{
public:
NumType operat... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/memory.h | .h | 2,774 | 106 | #ifndef SCITBX_ARRAY_FAMILY_MEMORY_H
#define SCITBX_ARRAY_FAMILY_MEMORY_H
/* + On some platforms std::malloc is 16-byte aligned:
- glibc 2.8 onwards on 64 bit system:
http://www.gnu.org/s/libc/manual/html_node/Aligned-Memory-Blocks.html
the version requirement is lifted from the Eigen library
(c.f. comments in src... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny_reductions.h | .h | 3,654 | 156 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_reductions
*/
#ifndef SCITBX_ARRAY_FAMILY_TINY_REDUCTIONS_H
#define SCITBX_AR... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/small_algebra.h | .h | 58,690 | 1,819 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_algebras
*/
#ifndef SCITBX_ARRAY_FAMILY_SMALL_ALGEBRA_H
#define SCITBX_ARRAY_... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/shared_plain.h | .h | 10,975 | 382 | /* This code is derived in part from:
* STLport-4.5.3/stlport/stl/_vector.h
* STLport-4.5.3/stlport/stl/_vector.c
*
* Copyright (c) 1994
* Hewlett-Packard Company
*
* Copyright (c) 1996,1997
* Silicon Graphics Computer Systems, Inc.
*
* Copyright (c) 1997
* Moscow Center for SPARC Technology
*
* Copyri... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/shared.h | .h | 3,152 | 134 | #ifndef SCITBX_ARRAY_FAMILY_SHARED_H
#define SCITBX_ARRAY_FAMILY_SHARED_H
#include <scitbx/array_family/shared_plain.h>
#include <scitbx/array_family/ref_reductions.h>
namespace scitbx { namespace af {
// Dynamic allocation, shared (data and size), standard operators.
template <typename ElementType>
class shar... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/operator_traits_builtin.h | .h | 7,239 | 317 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_operator_traits_builtin
*/
#ifndef SCITBX_ARRAY_FAMILY_OPERATOR_TRAITS_BUILTI... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny_plain.h | .h | 1,732 | 60 | #ifndef SCITBX_ARRAY_FAMILY_TINY_PLAIN_H
#define SCITBX_ARRAY_FAMILY_TINY_PLAIN_H
#include <scitbx/array_family/ref.h>
#include <scitbx/array_family/detail/misc.h>
#include <scitbx/array_family/detail/tiny_helpers.h>
#include <scitbx/array_family/array_adaptor.h>
namespace scitbx { namespace af {
// Automatic allo... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/tiny_types.h | .h | 2,623 | 116 | #ifndef SCITBX_ARRAY_FAMILY_TINY_TYPES_H
#define SCITBX_ARRAY_FAMILY_TINY_TYPES_H
#include <scitbx/array_family/tiny.h>
namespace scitbx { namespace af {
typedef tiny<int, 2> int2;
typedef tiny<int, 3> int3;
typedef tiny<int, 4> int4;
typedef tiny<int, 6> int6;
typedef tiny<int, 9> int9;
typedef tiny<lon... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/error.h | .h | 363 | 20 | #ifndef SCITBX_ARRAY_FAMILY_ERROR_H
#define SCITBX_ARRAY_FAMILY_ERROR_H
#include <stdexcept>
// FIXES for broken compilers
#include <boost/config.hpp>
namespace scitbx { namespace af {
inline
void throw_range_error()
{
throw std::range_error("scitbx array_family range error");
}
}} // namespace scitbx:... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/accessors/mat_grid.h | .h | 290 | 14 | #ifndef SCITBX_ARRAY_FAMILY_ACCESSORS_MAT_GRID_H
#define SCITBX_ARRAY_FAMILY_ACCESSORS_MAT_GRID_H
#include <scitbx/array_family/accessors/c_grid.h>
namespace scitbx { namespace af {
/// The grid used for matrices throughout
typedef c_grid<2> mat_grid;
}} // scitbx::af
#endif // GUARD
| Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/accessors/c_index_1d_calculator.h | .h | 788 | 33 | #ifndef SCITBX_ARRAY_FAMILY_ACCESSORS_C_INDEX_1D_CALCULATOR_H
#define SCITBX_ARRAY_FAMILY_ACCESSORS_C_INDEX_1D_CALCULATOR_H
#include <cstddef>
namespace scitbx { namespace af {
template <std::size_t N>
struct c_index_1d_calculator
{
template <typename ExtendArrayType, typename IndexType>
static std::si... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/accessors/trivial.h | .h | 608 | 29 | #ifndef SCITBX_ARRAY_FAMILY_ACCESSORS_TRIVIAL_H
#define SCITBX_ARRAY_FAMILY_ACCESSORS_TRIVIAL_H
#include <cstddef>
namespace scitbx { namespace af {
class trivial_accessor
{
public:
typedef std::size_t index_type;
struct index_value_type {};
trivial_accessor() : size_(0) {}
trivial_... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/accessors/c_grid.h | .h | 6,459 | 248 | // The implementations in this file are highly redundant in order
// to help the optimizer.
#ifndef SCITBX_ARRAY_FAMILY_ACCESSORS_C_GRID_H
#define SCITBX_ARRAY_FAMILY_ACCESSORS_C_GRID_H
#include <scitbx/array_family/accessors/c_index_1d_calculator.h>
#include <scitbx/array_family/accessors/flex_grid.h>
#include <scit... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/accessors/flex_grid.h | .h | 10,471 | 402 | #ifndef SCITBX_ARRAY_FAMILY_ACCESSORS_FLEX_GRID_H
#define SCITBX_ARRAY_FAMILY_ACCESSORS_FLEX_GRID_H
#include <scitbx/error.h>
#include <scitbx/array_family/small.h>
#include <scitbx/array_family/small_reductions.h>
#include <scitbx/array_family/small_algebra.h>
namespace scitbx { namespace af {
typedef small<long,... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/tiny_helpers.h | .h | 3,840 | 163 | // Included from tiny_plain.h
// DO NOT INCLUDE THIS FILE DIRECTLY.
#define SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(class_name) \
explicit \
class_name( \
value_type const& v0 \
) { \
this->elems[0] = v0; \
} \
class_name( \
value_type const& v0, \
value_type const& v1 \
) { \
this->elems[0] = v0; ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/generic_array_functors.h | .h | 9,246 | 331 | #ifndef SCITBX_ARRAY_FAMILY_GENERIC_ARRAY_FUNCTORS_H
#define SCITBX_ARRAY_FAMILY_GENERIC_ARRAY_FUNCTORS_H
#include <scitbx/array_family/detail/generic_array_operators.h>
namespace scitbx { namespace af {
template <typename FunctorType,
typename ElementType,
typename ElementTypeResult>
cla... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/reducing_boolean_mem_fun.h | .h | 1,932 | 77 | // Included from tiny.h, small.h, shared.h, versa.h
// DO NOT INCLUDE THIS FILE DIRECTLY.
bool all_eq(base_class const& other) const
{
return this->const_ref().all_eq(other.const_ref());
}
bool all_eq(ElementType const& other) const
{
return this->const_ref().all_eq(other... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/operator_functors.h | .h | 6,386 | 228 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_operator_functors
*/
#ifndef SCITBX_ARRAY_FAMILY_OPERATOR_FUNCTORS_H
#define ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/push_back_etc.h | .h | 6,033 | 206 | // Included from small_plain.h and shared_plain.h
// DO NOT INCLUDE THIS FILE DIRECTLY.
void assign(size_type const& sz, ElementType const& x) {
if (sz > capacity()) {
clear();
reserve(sz);
std::uninitialized_fill_n(begin(), sz, x);
m_set_size(sz);
}
... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/misc.h | .h | 3,120 | 133 | #ifndef SCITBX_ARRAY_FAMILY_MISC_H
#define SCITBX_ARRAY_FAMILY_MISC_H
#include <scitbx/array_family/type_traits.h>
#include <memory>
namespace scitbx { namespace af {
class reserve
{
public:
reserve(std::size_t size) : size_(size) {}
std::size_t
operator()() const { return size_; }
pr... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/auto_allocator.h | .h | 515 | 21 | #ifndef SCITBX_ARRAY_FAMILY_AUTO_ALLOCATOR_H
#define SCITBX_ARRAY_FAMILY_AUTO_ALLOCATOR_H
#include <boost/type_traits/alignment_traits.hpp>
namespace scitbx { namespace af { namespace detail {
template <typename T, std::size_t N>
union auto_allocator
{
typedef typename boost::type_with_alignment<
(bo... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/std_imports.h | .h | 8,115 | 318 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.source_generators.array_family.generate_std_imports
*/
#ifndef SCITBX_ARRAY_FAMILY_STD_IMPORTS_H
#define SCITBX_ARRAY... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/generic_array_operators.h | .h | 10,267 | 380 | #ifndef SCITBX_ARRAY_FAMILY_GENERIC_ARRAY_OPERATORS_H
#define SCITBX_ARRAY_FAMILY_GENERIC_ARRAY_OPERATORS_H
#include <scitbx/array_family/detail/misc.h>
namespace scitbx { namespace af {
// functor(array), non-POD result type
template <typename FunctorType,
typename ElementType,
typename ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/array_family/detail/ref_helpers.h | .h | 3,470 | 91 | // Included from ref.h
// DO NOT INCLUDE THIS FILE DIRECTLY.
#include <boost/operators.hpp>
namespace scitbx { namespace af { namespace detail {
template<class T>
class ref_reverse_iterator
: public boost::random_access_iterator_helper<ref_reverse_iterator<T>, T>
{
T* p;
typedef ref_reverse_ite... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/matrix/multiply.h | .h | 5,386 | 228 | #ifndef SCITBX_MATRIX_MULTIPLY_H
#define SCITBX_MATRIX_MULTIPLY_H
namespace scitbx { namespace matrix {
//! Generic matrix multiplication function: a * b
/*! ab[ar, bc] = a[ar, ac] * b[ac, bc]
*/
template <typename NumTypeA,
typename NumTypeB,
typename NumTypeAB>
void
multiply(
... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/matrix/as_xyz.h | .h | 2,132 | 82 | #ifndef SCITBX_MATRIX_AS_XYZ_H
#define SCITBX_MATRIX_AS_XYZ_H
#include <scitbx/rational.h>
#include <scitbx/error.h>
#include <cstring>
namespace scitbx { namespace matrix {
template <typename IntType>
std::string
rational_as_xyz(
int n_rows,
int n_columns,
const IntType* r_num,
IntType r_den,
... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/scitbx/matrix/row_echelon.h | .h | 5,449 | 200 | #ifndef SCITBX_MATRIX_ROW_ECHELON_H
#define SCITBX_MATRIX_ROW_ECHELON_H
#include <scitbx/array_family/accessors/mat_grid.h>
#include <scitbx/array_family/small.h>
#include <scitbx/array_family/misc_functions.h>
#include <scitbx/matrix/multiply.h>
#include <scitbx/math/gcd.h>
namespace scitbx { namespace matrix { name... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/miller.h | .h | 3,831 | 135 | /*! \file
Handling of Miller indices.
*/
#ifndef CCTBX_MILLER_H
#define CCTBX_MILLER_H
#include <scitbx/vec3.h>
#include <scitbx/array_family/misc_functions.h>
#include <cctbx/import_scitbx_af.h>
#include <cctbx/error.h>
#include <cstdio>
namespace cctbx {
//! Miller index namespace.
namespace miller {
/... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/coordinates.h | .h | 5,808 | 190 | #ifndef CCTBX_COORDINATES_H
#define CCTBX_COORDINATES_H
#include <scitbx/vec3.h>
#include <cctbx/import_scitbx_af.h>
namespace cctbx {
template <typename FloatType>
class fractional;
template <typename IntType>
class grid_point;
//! Class for cartesian (orthogonal, real) coordinates.
/*! The template p... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/crystal_orientation.h | .h | 6,031 | 185 | #ifndef CCTBX_CRYSTL_ORIENT_H
#define CCTBX_CRYSTL_ORIENT_H
#include <cctbx/uctbx.h>
#include <cctbx/sgtbx/change_of_basis_op.h>
namespace cctbx {
//! Shorthand for default vec3 type in orientation toolbox.
typedef scitbx::vec3<double> oc_vec3;
//! Shorthand for default mat3 type in orientation toolbox.
type... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/import_scitbx_af.h | .h | 190 | 12 | #ifndef CCTBX_IMPORT_SCITBX_AF_H
#define CCTBX_IMPORT_SCITBX_AF_H
namespace scitbx { namespace af {
}}
namespace cctbx {
namespace af = scitbx::af;
}
#endif // CCTBX_IMPORT_SCITBX_AF_H
| Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/uctbx.h | .h | 41,386 | 1,241 | #ifndef CCTBX_UCTBX_H
#define CCTBX_UCTBX_H
#include <cmath>
#include <boost/numeric/conversion/cast.hpp>
#include <boost/optional.hpp>
#include <scitbx/constants.h>
#include <scitbx/sym_mat3.h>
#include <scitbx/array_family/tiny_types.h>
#include <scitbx/array_family/small.h>
#include <scitbx/array_family/shared.h>
#... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/error.h | .h | 2,301 | 78 | /* *****************************************************
THIS IS AN AUTOMATICALLY GENERATED FILE. DO NOT EDIT.
*****************************************************
Generated by:
scitbx.generate_error_h
*/
/*! \file
Declarations and macros for exception handling.
*/
#ifndef CCTBX_ERROR_H
#define ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/utils.h | .h | 458 | 24 | #ifndef CCTBX_SGTBX_UTILS_H
#define CCTBX_SGTBX_UTILS_H
namespace cctbx { namespace sgtbx { namespace utils {
int change_denominator(
const int *old_num, int old_den,
int *new_num, int new_den, int n);
class cmp_i_vec
{
public:
cmp_i_vec(std::size_t n) : n_(n) {}
bool operator()(... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/change_of_basis_op.cpp | .cpp | 3,290 | 118 | #include <cctbx/sgtbx/change_of_basis_op.h>
namespace cctbx { namespace sgtbx {
change_of_basis_op::change_of_basis_op(
parse_string& symbol,
const char* stop_chars,
int r_den,
int t_den)
:
c_(0, 0),
c_inv_(0, 0)
{
rt_mx_from_string result(
symbol, stop_chars, r_den, t_den,
... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/change_of_basis_op.h | .h | 10,494 | 340 | #ifndef CCTBX_SGTBX_CHANGE_OF_BASIS_OP_H
#define CCTBX_SGTBX_CHANGE_OF_BASIS_OP_H
#include <cctbx/sgtbx/rt_mx.h>
#include <cctbx/sgtbx/utils.h>
#include <cctbx/uctbx.h>
namespace cctbx { namespace sgtbx {
//! Change-of-basis (transformation) operator.
/*! For ease of use, a change-of-basis matrix c() and its inv... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/rot_mx.cpp | .cpp | 3,017 | 117 | #include <cctbx/sgtbx/rot_mx.h>
#include <cctbx/sgtbx/utils.h>
#include <scitbx/math/gcd.h>
namespace cctbx { namespace sgtbx {
void throw_unsuitable_rot_mx(const char* file, long line)
{
throw error_rational_vector(file, line,
"Unsuitable value for rational rotation matrix.");
}
rot_mx rot_mx::new... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/rt_mx.cpp | .cpp | 11,090 | 380 | #include <cctbx/sgtbx/rt_mx.h>
#include <scitbx/matrix/row_echelon.h>
#include <ctype.h>
#include <string.h>
namespace cctbx { namespace sgtbx {
rt_mx rt_mx::new_denominators(int r_den, int t_den) const
{
rt_mx result(*this);
if (r_den) result.r_ = result.r_.new_denominator(r_den);
if (t_den) result.t... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/parse_string.h | .h | 2,961 | 116 | #ifndef CCTBX_SGTBX_PARSE_STRING_H
#define CCTBX_SGTBX_PARSE_STRING_H
#include <cstddef>
#include <string>
namespace cctbx { namespace sgtbx {
//! Class for communicating string parsing errors.
/*! This class is used by functions such as
cctbx::sgtbx::space_group::parse_hall_symbol()
or a constructor... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/rot_mx.h | .h | 11,934 | 411 | #ifndef CCTBX_SGTBX_ROT_MX_H
#define CCTBX_SGTBX_ROT_MX_H
#include <scitbx/sym_mat3.h>
#include <cctbx/sgtbx/tr_vec.h>
#include <scitbx/matrix/as_xyz.h>
namespace cctbx { namespace sgtbx {
void throw_unsuitable_rot_mx(const char* file, long line);
class rot_mx_info; // forward declaration
//! 3x3 rotation ma... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/utils.cpp | .cpp | 1,220 | 43 | #include <cstddef>
#include <cctbx/sgtbx/utils.h>
#include <scitbx/array_family/misc_functions.h>
namespace cctbx { namespace sgtbx { namespace utils {
int change_denominator(
const int *old_num, int old_den,
int *new_num, int new_den, int n)
{
for(std::size_t i=0;i<n;i++) {
new_num[i]... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/tr_vec.cpp | .cpp | 1,981 | 73 | #include <cctbx/sgtbx/tr_vec.h>
#include <cctbx/sgtbx/utils.h>
#include <scitbx/math/gcd.h>
namespace cctbx { namespace sgtbx {
void throw_unsuitable_tr_vec(const char* file, long line)
{
throw error_rational_vector(file, line,
"Unsuitable value for rational translation vector.");
}
tr_vec tr_vec::... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/basic.h | .h | 1,655 | 59 | #ifndef CCTBX_SGTBX_BASIC_H
#define CCTBX_SGTBX_BASIC_H
#include <scitbx/mat3.h>
#include <scitbx/rational.h>
#include <cctbx/error.h>
namespace cctbx {
//! Shorthand for default vec3 type in space group toolbox.
typedef scitbx::vec3<int> sg_vec3;
//! Shorthand for default mat3 type in space group toolbox.
t... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/rt_mx.h | .h | 20,588 | 673 | #ifndef CCTBX_SGTBX_RT_MX_H
#define CCTBX_SGTBX_RT_MX_H
#include <cctbx/sgtbx/rot_mx.h>
#include <cctbx/sgtbx/parse_string.h>
#include <cctbx/coordinates.h>
#include <scitbx/sym_mat3.h>
#include <scitbx/math/gcd.h>
#include <scitbx/array_family/tiny_types.h>
#include <cctbx/import_scitbx_af.h>
namespace cctbx { names... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/sgtbx/tr_vec.h | .h | 6,560 | 236 | #ifndef CCTBX_SGTBX_TR_VEC_H
#define CCTBX_SGTBX_TR_VEC_H
#include <cctbx/sgtbx/basic.h>
#include <scitbx/math/modulo.h>
#include <scitbx/array_family/tiny.h>
#include <scitbx/type_holder.h>
#include <cctbx/import_scitbx_af.h>
namespace cctbx { namespace sgtbx {
void throw_unsuitable_tr_vec(const char* file, long ... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/uctbx/crystal_orientation.cpp | .cpp | 2,295 | 75 | #include <cctbx/crystal_orientation.h>
#include <scitbx/math/unimodular_generator.h>
namespace cctbx {
cctbx::crystal_orientation::crystal_orientation(
oc_mat3 const& matrix, bool const& reciprocal_flag):
Astar_(reciprocal_flag?matrix:matrix.inverse()){}
cctbx::uctbx::unit_cell
cctbx::crystal_orientation::unit_c... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/uctbx/fast_minimum_reduction.h | .h | 11,698 | 401 | #ifndef CCTBX_UCTBX_FAST_MINIMUM_REDUCTION_H
#define CCTBX_UCTBX_FAST_MINIMUM_REDUCTION_H
#include <cctbx/uctbx.h>
#include <cctbx/error.h>
#if !defined(CCTBX_UCTBX_FAST_MINIMUM_REDUCTION_OVERZEALOUS_OPTIMIZER)
# if defined(__GNUC__) && __GNUC__ == 2 && __GNUC_MINOR__ == 96
# define CCTBX_UCTBX_FAST_MINIMUM_REDUCTIO... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/uctbx/uctbx.cpp | .cpp | 16,963 | 559 | #include <cctbx/uctbx/fast_minimum_reduction.h>
#include <cctbx/sgtbx/change_of_basis_op.h>
#include <scitbx/math/unimodular_generator.h>
#include <scitbx/array_family/tiny_algebra.h>
namespace cctbx { namespace uctbx {
bool
unit_cell_angles_are_feasible(
scitbx::vec3<double> const& values_deg,
double tol... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/uctbx/spoil_optimization.cpp | .cpp | 185 | 7 | namespace cctbx { namespace uctbx {
float spoil_optimization(float value) { return value; }
double spoil_optimization(double value) { return value; }
}} // namespace cctbx::uctbx
| C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/neutron.h | .h | 3,514 | 132 | #ifndef CCTBX_ELTBX_NEUTRON_H
#define CCTBX_ELTBX_NEUTRON_H
#include <string>
#include <complex>
#include <cctbx/eltbx/xray_scattering/gaussian.h>
namespace cctbx { namespace eltbx { namespace neutron {
namespace detail
{
struct raw_record_neutron_news_1992
{
const char* label;
float bo... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/xray_scattering.h | .h | 11,461 | 354 | #ifndef CCTBX_ELTBX_XRAY_SCATTERING_H
#define CCTBX_ELTBX_XRAY_SCATTERING_H
#include <cctbx/eltbx/basic.h>
#include <cctbx/eltbx/xray_scattering/gaussian.h>
#include <boost/optional.hpp>
#include <boost/config.hpp>
#include <stdexcept>
#include <ctype.h>
namespace cctbx { namespace eltbx { namespace xray_scattering {... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/electron_scattering.h | .h | 2,870 | 91 | #ifndef CCTBX_ELECTRON_SCATTERING_H
#define CCTBX_ELECTRON_SCATTERING_H
#include <cctbx/eltbx/basic.h>
#include <cctbx/eltbx/xray_scattering.h>
#include <boost/optional.hpp>
#include <boost/config.hpp>
#include <stdexcept>
#include <ctype.h>
namespace cctbx { namespace eltbx { namespace electron_scattering {
//! C... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/basic.cpp | .cpp | 1,293 | 54 | #include <cctbx/eltbx/basic.h>
#include <cstddef>
#include <ctype.h>
namespace cctbx { namespace eltbx { namespace basic {
std::string strip_label(std::string const& label, bool exact)
{
std::string result;
std::string::const_iterator l;
for (l = label.begin(); l != label.end(); l++) {
if (!issp... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/neutron.cpp | .cpp | 4,453 | 154 | #include <cctbx/eltbx/neutron.h>
#include <cctbx/eltbx/basic.h>
namespace cctbx { namespace eltbx { namespace neutron {
namespace detail {
namespace {
/*
Neutron bound scattering lengths & cross-sections
Data from: http://www.ncnr.nist.gov/resources/n-lengths/list.html
All of this data was ta... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/basic.h | .h | 1,863 | 50 | #ifndef CCTBX_ELTBX_BASIC_H
#define CCTBX_ELTBX_BASIC_H
#include <cctbx/error.h>
namespace cctbx {
//! Element Toolbox namespace.
/*! The eltbx is a collection of tables of various x-ray and
neutron scattering factors, element names, atomic numbers,
atomic weights, ionic radii, and characteristic x-ra... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/electron_scattering/peng1996.cpp | .cpp | 32,880 | 671 | #include <cctbx/eltbx/electron_scattering.h>
namespace cctbx { namespace eltbx { namespace electron_scattering {
namespace {
/*
peng1996_raw_table contains the reformatted data
2008-06-30, translated by L. Lutterotti from
L.-M. PENG, G. REN, S. L. DUDAREV & M. J. WHELAN
Robust Parameteriza... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/xray_scattering/form_factor.h | .h | 2,284 | 89 | #ifndef CCTBX_ELTBX_XRAY_SCATTERING_FORM_FACTOR_H
#define CCTBX_ELTBX_XRAY_SCATTERING_FORM_FACTOR_H
#include <scitbx/array_family/shared.h>
#include <cctbx/import_scitbx_af.h>
namespace cctbx { namespace eltbx {
//! X-ray scattering tables.
namespace xray_scattering {
//! Helper.
template<class Derived>
class... | Unknown |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/xray_scattering/wk1995.cpp | .cpp | 38,938 | 693 | #include <cctbx/eltbx/xray_scattering.h>
namespace cctbx { namespace eltbx { namespace xray_scattering {
namespace {
/*
wk1995_raw_table contains the reformatted data found in
ftp://wrzx02.rz.uni-wuerzburg.de/pub/local/Crystallography/sfac.dat
File picked up Jul 4, 1995.
File ver... | C++ |
3D | YellProgram/Yell | lib/cctbx_stubs/cctbx/eltbx/xray_scattering/gaussian.h | .h | 1,664 | 62 | #ifndef CCTBX_ELTBX_XRAY_SCATTERING_GAUSSIAN_H
#define CCTBX_ELTBX_XRAY_SCATTERING_GAUSSIAN_H
#include <cctbx/eltbx/xray_scattering/form_factor.h>
#include <scitbx/math/gaussian/sum.h>
#include <cctbx/import_scitbx_af.h>
namespace cctbx { namespace eltbx { namespace xray_scattering {
class gaussian
: public sc... | Unknown |
3D | pymodproject/pymod | CHANGELOG.md | .md | 2,585 | 46 | # PyMod 3 Changelog
This file contains descriptions of changes of new PyMod 3 releases.
## Version 3.0.2 (17/8/2020)
- Added the possibility to import results from HH-suite output files (HHR and A3M).
- Added compatibility for pyside2 (thanks to Thomas Holder).
- Fixed the requirements for fully compatible PyMOL versi... | Markdown |
3D | pymodproject/pymod | scripts/build_pymol_plugin.py | .py | 1,512 | 43 | """
Script for building a PyMOL plugin ZIP file for PyMod 3. You must run this in the
root folder of the repository.
"""
import os
import argparse
import datetime
import zipfile
# Parses the commandline.
parser = argparse.ArgumentParser()
parser.add_argument("-r", "--revision", help="Number of the plugin revision fo... | Python |
3D | pymodproject/pymod | pymod3/__init__.py | .py | 12,531 | 305 | ###########################################################################
# Copyright (C) 2020 Giacomo Janson, Alessandro Paiardini
# Copyright (C) 2016-2019 Giacomo Janson, Chengxin Zhang, Alessandro Paiardini
# Copyright (C) 2011-2012 Emanuele Bramucci & Alessandro Paiardini,
# Francesco Bos... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_os_specific.py | .py | 14,317 | 406 | # Copyright 2016 by Chengxin Zhang, Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module for cross-platform compatib... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_residue.py | .py | 4,524 | 139 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Residues of sequences and structures in PymMod.
""... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/__init__.py | .py | 0 | 0 | null | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_exceptions.py | .py | 2,028 | 74 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Exceptions to be used within PyMod.
"""
class PyM... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_element_feature.py | .py | 2,660 | 72 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
class Element_feature:
def __init__(self, id, nam... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_vars.py | .py | 44,711 | 812 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module contaning variables and function used throu... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_tool.py | .py | 13,763 | 359 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Classes used to control PyMod tools (the external ... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_element.py | .py | 35,954 | 955 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module implementing classes to represent "PyMod el... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_threading.py | .py | 9,130 | 267 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module to display a dialog with a progressbar used... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/seq_star_alignment.py | .py | 17,236 | 488 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module implementing functions to merge alignments ... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/__init__.py | .py | 0 | 0 | null | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/seq_io.py | .py | 5,243 | 129 | # Copyright 2016 by Chengxin Zhang, Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Sequences input and output.
"""
i... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/seq_manipulation.py | .py | 10,155 | 282 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
import re
import Bio
from pymod_lib import pymod_var... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/seq_conservation.py | .py | 3,888 | 111 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Methods to compute conservation values in an align... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_seq/seq_headers.py | .py | 3,994 | 112 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Operations on the names and ids of the sequences l... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_structure/__init__.py | .py | 28,889 | 595 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module with classes to represent the 3D structures... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_main/_installer.py | .py | 57,791 | 1,361 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module for automatically downloading and installin... | Python |
3D | pymodproject/pymod | pymod3/pymod_lib/pymod_main/__init__.py | .py | 33,413 | 711 | # Copyright 2020 by Giacomo Janson. All rights reserved.
# This code is part of the PyMod package and governed by its license. Please
# see the LICENSE file that should have been included as part of this package
# or the main __init__.py file in the pymod3 folder.
"""
Module implementing a class to represent the PyMod... | Python |
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