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Returns cell content
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Draw a networkx graph with Pygraphviz.
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Merges another track with this one, ordering the points based on a distance heuristic Args: track (:obj:`Track`): Track to merge with pairings Returns: :obj:`Segment`: self
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Given an iterable collection of block_keys in the course, returns a mapping of the block_keys to the present completion values of their associated blocks. If a completion is not found for a given block in the current course, 0.0 is returned. The service does not attempt to verify that ...
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Filters variants down to those which have overlap a gene whose expression value in the transcript_expression_dict argument is greater than min_expression_value. Parameters ---------- gene_expression_dict : dict Dictionary mapping Ensembl gene IDs to expression estima...
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Get feature names for transformer output as a function of input names. Used by :func:`explain_weights` when applied to a scikit-learn Pipeline, this ``singledispatch`` should be registered with custom name transformations for each class of transformer. If there is no ``singledispatch`` handler reg...
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Search for a specific sequence on disk. The padding characters used in the `pattern` are used to filter the frame values of the files on disk (if `strictPadding` is True). Examples: Find sequence matching basename and extension, and a wildcard for any frame. ...
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Perform magnetometer calibration for current IMU.
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Return a printable string from the input ``sequence`` :param sequence: byte or string sequence >>> print(printable('\\x1b[1;34mtest\\x1b[0m')) .[1;34mtest.[0m >>> printable('\\x00\\x01\\x02\\x03\\x04\\x05\\x06\\x06') == '........' True >>> print(printable('12345678')) 12345678 >>> pri...
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Returns a vault_id string or None
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Return statements sampled according to belief. Statements are sampled independently according to their belief scores. For instance, a Staement with a belief score of 0.7 will end up in the returned Statement list with probability 0.7. Parameters ---------- stmts : list[indra.statements.Sta...
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Alter the point stored in the location while preserving the labware. This returns a new Location and does not alter the current one. It should be used like .. code-block:: python >>> loc = Location(Point(1, 1, 1), 'Hi') >>> new_loc = loc.move(Point(1, 1, 1)) ...
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Send verification email to this users email address. Remember that the verification email may end up in the users spam folder.
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Called when count if finished
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Convert a numpy structured array into a ROOT TTree. Fields of basic types, strings, and fixed-size subarrays of basic types are supported. ``np.object`` and ``np.float16`` are currently not supported. Parameters ---------- arr : array A numpy structured array name : str (optional, defa...
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Display records for a domain.
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lmfit tilt model
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Combine attributes in multiple columns into single named tuple.
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Load memory objects from paged memory. :param addr: Address to start loading. :param num_bytes: Number of bytes to load. :param bool ret_on_segv: True if you want load_bytes to return directly when a SIGSEV is triggered, otherwise a SimSegfaultError will be rais...
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Convert det OID or ID to det OID
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Build argument docs in python style. arg_names : list of str Argument names. arg_types : list of str Argument type information. arg_descs : list of str Argument description information. remove_dup : boolean, optional Whether remove duplication or not. Returns ...
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Run it and collect output. Returns: 1 (true) If everything went well. 0 (false) If there were problems.
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Gets the transform if it is absolute. Returns an error if the transform is some other type.
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Entry point when used via command line. Features are given using the environment variable ``PRODUCT_EQUATION``. If it is not set, ``PRODUCT_EQUATION_FILENAME`` is tried: if it points to an existing equation file that selection is used. (if ``APE_PREPEND_FEATURES`` is given, those features are prepende...
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Write the index of all our files to the MAR file.
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Updates code in pys code_array
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Setting up a user session :param endpoint_context: :param areq: :param uid: :param acr: :param client_id: :param salt: :param authn_event: A already made AuthnEvent :return:
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Sets document metadata. The ``PDF_METADATA_CREATE_DATE`` and ``PDF_METADATA_MOD_DATE`` values must be in ISO-8601 format: YYYY-MM-DDThh:mm:ss. An optional timezone of the form "[+/-]hh:mm" or "Z" for UTC time can be appended. All other metadata values can be any UTF-8 string. :...
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Method to set user status
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Writes the complete Morse-Smale merge hierarchy to a string object. @ Out, a string object storing the entire merge hierarchy of all minima and maxima.
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this function allows a default to be set on an option that dosen't have one. It is used when a base class defines an Option for use in derived classes but cannot predict what value would useful to the derived classes. This gives the derived classes the opportunity to set a logical defa...
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Returns True if the expression `e` has only one solution by querying the constraint solver. It does also add that unique solution to the solver's constraints.
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Returns the instance of the related object linked by the field.
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Checks that value-string is a valid value-string for the given feature.
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Add a device override to the PLM.
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Create a directory in etcd. name The etcd directory name, for example: ``/foo/bar/baz``. profile Optional, defaults to ``None``. Sets the etcd profile to use which has been defined in the Salt Master config. .. code-block:: yaml my_etd_config: etcd.ho...
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Performs pseudo-localization on a string. The specific transforms to be applied to the string is defined in the transforms field of the object. :param s: String to pseudo-localize. :returns: Copy of the string s with the transforms applied. If the input string is an empty st...
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Highlights given file occurence. :param file: File containing the occurence. :type file: unicode :param occurence: Occurence to highlight. :type occurence: Occurence or SearchOccurenceNode
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Helper function to persist a configuration in the ini file
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Convert the raw_data to an integer.
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Enqueues the instantiation of the given component :param factory: Factory name :param component: Component name :param properties: Component properties :raise ValueError: Component name already reserved in the queue :raise Exception: Error instantiating the component
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Sign the given message with the RSA key.
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Calculates the charge for pH 1-13. Parameters ---------- seq : str Sequence of amino acids. granularity : float, optional Granularity of pH values i.e. if 0.1 pH = [1.0, 1.1, 1.2...]
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Return various properties of the binary tree. :return: Binary tree properties. :rtype: dict **Example**: .. doctest:: >>> from binarytree import Node >>> >>> root = Node(1) >>> root.left = Node(2) >>> root.right = Node(3) ...
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Calculate how much variance in returns do the values explain
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Disconnect an observer from this subject
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Fit the clustering on the data Parameters ---------- sequences : list of array-like, each of shape [sequence_length, n_features] A list of multivariate timeseries. Each sequence may have a different length, but they all must have the same number of features....
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Adds the specified data frame to the display in a nicely formatted scrolling table. :param data_frame: The pandas data frame to be rendered to a table. :param scale: The display scale with units of fractional screen height. A value of 0.5 constrains the output to a maximum height eq...
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Gets the assessment form for creating new assessments. A new form should be requested for each create transaction. arg: assessment_record_types (osid.type.Type[]): array of assessment record types to be included in the create operation or an empty list if none ...
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Find any missing environment variables
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Shift index by desired number of time frequency increments. This method is for shifting the values of datetime-like indexes by a specified time increment a given number of times. Parameters ---------- periods : int Number of periods (or increments) to shift by, ...
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Closes the socket server and any associated resources.
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return a context manager wrapping postgres savepoints
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Print all available maps of a given type. Parameters ---------- map_type : {'Sequential', 'Diverging', 'Qualitative'} Select map type to print. number : int, optional Filter output by number of defined colors. By default there is no numeric filtering.
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r""" Write a plotly scatter plot to HTML file that doesn't require server >>> from nlpia.loaders import get_data >>> df = get_data('etpinard') # pd.read_csv('https://plot.ly/~etpinard/191.csv') >>> df.columns = [eval(c) if c[0] in '"\'' else str(c) for c in df.columns] >>> data = {'data': [ ... ...
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Enable Arp Suppression on a Vlan. Args: name:Vlan name on which the Arp suppression needs to be enabled. enable (bool): If arp suppression should be enabled or disabled.Default:``True``. get (bool) : Get config instead of editing config. (True, False) ...
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Load the module. Required for the Python meta-loading mechanism.
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Set a stack policy when using changesets. ChangeSets don't allow you to set stack policies in the same call to update them. This sets it before executing the changeset if the stack policy is passed in. Args: stack_policy (:class:`stacker.providers.base.Template`): A templat...
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Checking packages for upgrade
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Create custom Domain Settings Domain settings are referenced by an OSPFProfile :param str name: name of custom domain settings :param str abr_type: cisco|shortcut|standard :param int auto_cost_bandwidth: Mbits/s :param bool deprecated_algorithm: RFC 1518 compatibility :...
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Tidy the given eggs list
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Returns the list of Tracks on this album.
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Whitelist domains for the messenger extensions
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STXB Ra, Rb Sign extend the byte in Rb and store the result in Ra
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Ensures that all rows pertaining to a given choice situation are located next to one another. Raises a helpful ValueError otherwise. This check is needed because the hessian calculation function requires the design matrix to have contiguity in rows with the same observation id. Parameters ---------...
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Returns MultiIndex without any rows containing null values according to Baloo's convention. Returns ------- MultiIndex MultiIndex with no null values.
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Electron-electron bremsstrahlung emissivity per unit photon energy
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Parse the given argument vector.
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Executes a command returning its exit code and output.
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Multiply two values, ignoring None
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Save items from list to the file.
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Load sensors from pickle file.
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Add the specified COMMIT to this replica's list of received commit requests. :param commit: the COMMIT to add to the list :param sender: the name of the node that sent the COMMIT
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Prompts user to pick from provided options. It is possible to provide a function as an option although it is not yet tested. This could allow a user to be prompted to provide their own value rather than the listed options. Args: field_name (string): Name of the field. context_str (string)...
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Fit a VAR model to the source activations. Returns ------- self : Workspace The Workspace object. Raises ------ RuntimeError If the :class:`Workspace` instance does not contain source activations.
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Get an identicon configuration parameter. Precedance order is: - application config (`udata.cfg`) - theme config - default
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Iterates through the passed in `list_of_objs` and calls the `_render_serializable` method of each object's Resource type. This will probably support heterogeneous types at some point (hence the `item_types` initialization, as opposed to just item_type), but that might be better suited t...
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Make a copy of this SimLibrary, allowing it to be mutated without affecting the global version. :return: A new SimLibrary object with the same library references but different dict/list references
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Verify an M2Crypto-compatible signature :param Crypto.PublicKey.RSA._RSAobj key: The RSA public key object :param str message: The signed message to verify :rtype: str :return: The message (or digest) recovered from the signature, or an empty string if the verification failed
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Delete a resource file :param pid: The HydroShare ID of the resource :param filename: String representing the name of the resource file to delete :return: Dictionary containing 'resource_id' the ID of the resource from which the file was deleted, and 'file_name' the filename of the...
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Invokes the CO Index endpoint :param params_dict: dict of parameters :returns: a string containing raw JSON data :raises: *ValueError*, *APICallError*
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Deploy the best trained or user specified model to an Amazon SageMaker endpoint and return a ``sagemaker.RealTimePredictor`` object. For more information: http://docs.aws.amazon.com/sagemaker/latest/dg/how-it-works-training.html Args: initial_instance_count (int): Minimum number of...
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Filters out duplicates from passed PathInfo objects. Args: path_infos: An iterable with PathInfo objects. Returns: A list of PathInfo objects with duplicates removed. Duplicates are removed following this logic: they're sorted by (ctime, mtime, atime, inode number) in the descending order and then...
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Transform an entry point name into an identifier suitable for inclusion in a PyPI package name.
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Load and validate an experimental data configuration.
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Update a particular version for a particular service.
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Assume the identity of another target. This can be useful to make the global target assume the identity of an ELF executable. Arguments: other(:class:`Target`): The target whose identity to assume. Example: >>> from pwny import * >>> target.assume(ELF('my-ex...
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Helper function to unpickle data from `picklefile`.
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Send an RPC to a service using its registered agent. Args: short_name (str): The name of the service we would like to send and RPC to rpc_id (int): The rpc id that we would like to call payload (bytes): The raw bytes that we would like to send as an ...
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Add an operation to this Run instance. :Parameters: - `original_index`: The original index of this operation within a larger bulk operation. - `operation`: The operation document.
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much simpler as we only have to deal with our valid types
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Request network information. :param blink: Blink instance. :param network: Sync module network id.
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Refill the Federation wallet with tokens and fees. This keeps the federation wallet clean. Dealing with exact values simplifies the transactions. No need to calculate change. Easier to keep track of the unspents and prevent double spends that would result in transactions being rejected by the bitcoin ne...
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Compute the index in `dates` where the split-adjusted-asof-date falls. This is the date up to which, and including which, we will need to unapply all adjustments for and then re-apply them as they come in. After this date, adjustments are applied as normal. Parameters ----------...
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Build `ChannelNode` from json data provided in `json_tree`.
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Generates tuples of specfile and quant element for general formats
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Cleans a value, using either the user provided clean_value, or cls.reduce_value.
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Creates a new organization, and returns the created organization. :param auth.Authentication auth: authentication object, must be admin-level :param str owner_name: Username of organization owner :param str org_name: Organization name :param str full_name: Full name of organization ...
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Splits the `Collection` into _maxSize_ size or smaller `Collections` # Parameters _maxSize_ : `int` > The maximum number of elements in a retuned `Collection` # Returns `list [Collection]` > A list of `Collections` that if all merged (`|` operator) would create the...
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Creates a MissionTime instance from a string Format: YYYYMMDDHHMMSS Args: input_str: string to parse Returns: MissionTime instance