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Contact frequency matrix when contigs are already oriented. This is s a similar matrix as M, but rather than having the number of links in the cell, it points to an array that has the actual distances.
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Create a new DependentGraph from an iterable of TargetAdaptor subclasses.
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Comments on an issue, not on a particular line.
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Given _id, search the DB for the file which contains the data :param _id: The id to search (int) :param language: The user's language (en, es, etc.) :return: The filename
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Given a trail name, check to see if the given trail exists. Returns True if the given trail exists and returns False if the given trail does not exist. CLI Example: .. code-block:: bash salt myminion boto_cloudtrail.exists mytrail
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This interface is used to get the corresponding stored value based on hexadecimal contract address and stored key. :param hex_contract_address: hexadecimal contract address. :param hex_key: a hexadecimal stored key. :param is_full: :return: the information of contract storage.
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Ensures that the screen is always cleared, even on fatal errors in code that uses this renderer.
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Summarize the alignments for this subject. @return: A C{dict} with C{str} keys: bestScore: The C{float} best score of the matching reads. coverage: The C{float} fraction of the subject genome that is matched by at least one read. hspCount: The C{int} number o...
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Check if two date objects are within a specific range
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Convert a .TXT filename to a Therion .TH filename
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r""" Estimates a non-reversible transition matrix from count matrix C T_ij = c_ij / c_i where c_i = sum_j c_ij Parameters ---------- C: ndarray, shape (n,n) count matrix Returns ------- T: Estimated transition matrix
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Apply `func` to all fundamental types of `instance`. Parameters ---------- instance : dict instance to apply functions to func : callable function with two arguments (instance, path) to apply to all fundamental types recursively path : str path in the document (defaults to '...
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Forward of Decomposable Attention layer
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Draws the checkbox.
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Make sure the replay isn't corrupt, and is worth looking at.
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Restore watched status from the specified filepath.
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Initializes event for GSSHA model
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Exposes the jupyter notebook renderer to the command line Takes the same arguments as ArgumentParser.parse_args
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Remove an authorized key from the specified user's authorized key file, using a file as source CLI Example: .. code-block:: bash salt '*' ssh.rm_auth_key_from_file <user> salt://ssh_keys/<user>.id_rsa.pub
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Messages received in the channel - send them to the WebSocket.
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Return a list of starting consonant positions.
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A boolean flag. ``True`` if frame is in stdlib. :type: bool
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Coroutine that writes the next packet.
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Reset shader source if necesssary.
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Emit Python code generating the metadata for the given region
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Return whether a callback is currently registered for an object.
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Gets the metadata for children. return: (osid.Metadata) - metadata for the children *compliance: mandatory -- This method must be implemented.*
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Add an es_dsl inverse query object to the es_dsl Search object :param key_val: a key-value pair(dict) containing the query to be added to the search object :returns: self, which allows the method to be chainable with the other methods
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Check if notes exist for a given family Returns True if they exist, false otherwise
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Patch aiobotocore client so it generates subsegments when calling AWS services.
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Adds the resource to dictionary with given logical Id. It will overwrite, if the logicalId is already used. :param string logicalId: Logical Id to set to :param SamResource or dict resource: The actual resource data
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Get lower bound and upper bound for `self` in unsigned arithmetic. :return: a list of (lower_bound, upper_bound) tuples.
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Rectangle with a solid central region, then Gaussian fall-off at the edges.
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Returns a view that does on the fly type conversion of the underlying data. Parameters ---------- dtype : string or dtype NumPy dtype. Notes ----- This method returns a new Array object which is a view on the same underlying chunk data. Modifying any...
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Performs an ICMP ping to a host .. versionchanged:: 2015.8.0 Added support for SunOS CLI Example: .. code-block:: bash salt '*' network.ping archlinux.org .. versionadded:: 2015.5.0 Return a True or False instead of ping output. .. code-block:: bash salt '*' netwo...
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Given a path to a filename, make sure the directory exists
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Remove data item from document model. This method is NOT threadsafe.
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Returns the identity factor. Def: The identity factor of a factor has the same scope and cardinality as the original factor, but the values for all the assignments is 1. When the identity factor is multiplied with the factor it returns the factor itself. Returns -----...
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Generate a card pool with all cards matching specified filters
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Converts an rpc call into an API call governed by the settings. In typical usage, ``func`` will be a callable used to make an rpc request. This will mostly likely be a bound method from a request stub used to make an rpc call. The result is created by applying a series of function decorators defined ...
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Change the password of an existing user. :param username: the username who's password is being changed :type username: str :param password: the new password for the user :type password: str
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The method called by the threading library to start the thread.
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Retrieve a single note Returns a single note available to the user, according to the unique note ID provided If the note ID does not exist, this request will return an error :calls: ``get /notes/{id}`` :param int id: Unique identifier of a Note. :return: Dictionary that support...
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Handle frames sent to Channel0. :param frame_in: Amqp frame. :return:
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Add a mismatching entity to the index. We do this by simply adding the mismatch to the index. :param collections.Hashable entity: an object to be mismatching the values of `traits_indexed_by` :param list traits: a list of hashable traits to index the entity with
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Get a specific device configuration. A device can have at most one loaded and one pending device configuration. This returns that device_configuration based on a given flag. Keyword Args: pending(bool): Fetch the pending configuration or return the loaded o...
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compile list of all headers belonging to all specified groups eliminate all headers that are already included add any req'd drop-down menus return errors
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Create tube object, if not created before. Returns `Tube` object.
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As per the law, anonymize user identifier before sending it.
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Indicate whether ``value`` is empty. :param value: The value to evaluate. :returns: ``True`` if ``value`` is empty, ``False`` if it is not. :rtype: :class:`bool <python:bool>` :raises SyntaxError: if ``kwargs`` contains duplicate keyword parameters or duplicates keyword parameters passed to the...
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Increase a logger's verbosity up to the requested level. :param logger: The logger to change (a :class:`~logging.Logger` object). :param level: The log level to enable (a string or number). This function is used by functions like :func:`install()`, :func:`increase_verbosity()` and :func:`.enable_syste...
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Patch the current RAML ResourceNode by the resource with the correct method if it exists If the resource with the specified method does not exist an exception is raised. :param str method: the method of the resource :raises UnsupportedResourceMethodError: i...
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A method that creates the pLvlNextFunc attribute as a sequence of AR1-style functions. Draws on the attributes PermGroFac and PrstIncCorr. If cycles=0, the product of PermGroFac across all periods must be 1.0, otherwise this method is invalid. Parameters ---------- None...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'wxcode'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']}; ...
Translates weather codes into readable strings Returns translated string of variable length
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Registers a flag whose value parses as a point.
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Return the parent applet of ``widgetObj``. |Args| * ``widgetObj`` (**QWidget**): widget (if any) for which the containing applet is requested. |Returns| * **QtmacsApplet**: the applet containing ``widgetObj`` or **None**. |Raises| * **None**
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Write a data block without integrity check. This is the standard write method for a FeliCa Lite. The 16-byte string or bytearray *data* is written to the numbered *block* in service 0x0009 (NDEF write service). :: data = bytearray(range(16)) # 0x00, 0x01, ... 0x0F try: ...
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Return the current umask.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_SetPath'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sel...
Sets the current path to watch for new events. This also records the size of the old path, if any. If the size can't be found, an error is logged. Args: path: The full path of the file to watch.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'plot_vxx'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23']}; {'id': '4', 'type': 'identi...
Plot the Vxx component of the tensor. Usage ----- x.plot_vxx([tick_interval, xlabel, ylabel, ax, colorbar, cb_orientation, cb_label, show, fname]) Parameters ---------- tick_interval : list or tuple, optional, default = [30, 30] Intervals...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'register_host'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '14', '23']}; {'id'...
Register supported hosts
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}; {'id': '3', 'type': 'parameters', 'children': ['4', '8']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']...
Runs the markdown file and renders the contents to the notebook display :param project: :param step: :return: A run response dictionary containing
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Input can be either a file or directory or a list of files or directory. A directory will be parsed recursively. The function returns the resulting system. Stores the result of the run in the domain cache named after the identifier. :param path: directory to parse :param identifier: ide...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'can_process'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Determines whether it is appropriate for this adapter to respond to the user input.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'qr'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
Print QR Code for the provided string
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'xpath'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}...
Finds another node by XPath originating at the current node.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'grid_select'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Selects cells of grid with selection content
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getSuccessors'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
Gets successors of the given job by walking the job graph recursively. Any successor in alreadySeenSuccessors is ignored and not traversed. Returns the set of found successors. This set is added to alreadySeenSuccessors.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compare_version'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Compare two version number strings of the form W.X.Y.Z. The numbers are compared most-significant to least-significant. For example, 12.345.67.89 > 2.987.88.99. Args: a: First version number string to compare b: Second version number string to compare Returns: 0 if the numbers are identical, a po...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_filenames'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fi...
sort a list of files by filename only, ignoring the directory names
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_ready'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Save an indicator that the given service is now data_ready.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_invite'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10']}; {'id': '4', 'type': 'identifier', 'ch...
Actually invite a given user
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'bin_hex_type'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'arg'...
An argparse type representing binary data encoded in hex.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'makedirs'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'p'}; {'i...
A makedirs that avoids a race conditions for multiple processes attempting to create the same directory.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'output'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'...
Returns a ElasticsearchTarget representing the inserted dataset. Normally you don't override this.
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Check if the regular expression generates the value
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Return the full path of the current object.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_full_path'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Return the full path from which to read.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'src...
Validate OCRD-ZIP SRC must exist an be an OCRD-ZIP, either a ZIP file or a directory.
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Create user role
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Function for parallel evaluation of the acquisition function
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Add more users to the project. :returns: None :rtype: None :raises: None
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Blend a recipe into the base recipe. This performs an inner join of the blend_recipe to the base recipe's SQL.
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Formats value list from Munin Graph and returns multi-line value entries for the plugin fetch cycle. @param val_list: List of name-value pairs. @return: Multi-line text.
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Generate examples.
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Handle HTTP GET request. Returns template and context from generate_page_title and generate_sections to populate template.
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Returns a matching target object for the given source ID.
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A custom getter function for float32 parameters and float16 activations. This function ensures the following: 1. All variables requested with type fp16 are stored as type fp32. 2. All variables requested with type fp32 are returned as type fp16. See https://docs.nvidia.com/deeplearning/sdk/mixed-precision-...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unicode'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
Convert a string to unicode using the given encoding, and return it. This function uses the underlying to_unicode attribute. Arguments: s: a basestring instance to convert to unicode. Unlike Python's built-in unicode() function, it is okay to pass unicode strings to...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fetch_data'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}...
Fetch the latest data from Fido.
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parse command line options and run commands.
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Helper to figure out encoding setting inside constructors.
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Register a component with ComponentRegistry. Component must be a buildable object with a module_settings.json file that describes its name and the domain that it is part of. By default, this component is saved in the permanent registry associated with this environment and will remain r...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__query'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'doma...
Using the shell script to query pdns.cert.at is a hack, but python raises an error every time using subprocess functions to call whois. So this hack is avoiding calling whois directly. Ugly, but works. :param domain: The domain pdns is queried with. :type domain: str :param limit: Maximum number of res...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'print_modified_files'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Prints out which files were modified amongst those looked at :param anchors: Dictionary mapping file path strings to dictionaries containing AnchorHub tag/generated header key-value pairs
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Remove a server from the server data Args: server_id (int): The server to remove from the server data
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Creates the complete argument parser for the decorated class. Args: init_parser: argument parser for the __init__ method or None methods_to_parse: dict of method name pointing to their associated argument parser cls: the class we are decorating Returns: ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'csv'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id'...
Returns the security rules as a CSV. CSV format: - id - name - description - rules_direction - rules_ip_protocol - rules_from_port - rules_to_port - rules_grants_group_id - rules_grants_name - rules_grants_cidr_ip - rules_d...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'wiki_versions_list'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': []...
Return a list of wiki page version. Parameters: page_id (int): updater_id (int):
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Download streaming data from a URL, printing progress information to the terminal. Parameters ---------- url : str A URL that can be understood by ``requests.get``. chunk_size : int Number of bytes to read at a time from requests. **progress_kwargs Forwarded to click.pro...