code
stringlengths
51
2.38k
docstring
stringlengths
4
15.2k
def islice(self, start=None, stop=None, reverse=False): _len = self._len if not _len: return iter(()) start, stop, step = self._slice(slice(start, stop)) if start >= stop: return iter(()) _pos = self._pos min_pos, min_idx = _pos(start) if s...
Returns an iterator that slices `self` from `start` to `stop` index, inclusive and exclusive respectively. When `reverse` is `True`, values are yielded from the iterator in reverse order. Both `start` and `stop` default to `None` which is automatically inclusive of the beginnin...
def resolve(self, ref, document=None): try: url = self._urljoin_cache(self.resolution_scope, ref) if document is None: resolved = self._remote_cache(url) else: _, fragment = urldefrag(url) resolved = self.resolve_fragment(docume...
Resolve a fragment within the schema. If the resolved value contains a $ref, it will attempt to resolve that as well, until it gets something that is not a reference. Circular references will raise a SchemaError. :param str ref: URI to resolve. :param dict document: Optional sc...
def _validate_mandatory_keys(mandatory, validated, data, to_validate): errors = [] for key, sub_schema in mandatory.items(): if key not in data: errors.append('missing key: %r' % (key,)) continue try: validated[key] = sub_schema(data[key]) except NotVa...
Validate the manditory keys.
async def unignore_all(self, ctx): channels = [c for c in ctx.message.server.channels if c.type is discord.ChannelType.text] await ctx.invoke(self.unignore, *channels)
Unignores all channels in this server from being processed. To use this command you must have the Manage Channels permission or have the Bot Admin role.
def param_describe(params, quant=95, axis=0): par = np.mean(params, axis=axis) lo, up = perc(quant) p_up = np.percentile(params, up, axis=axis) p_lo = np.percentile(params, lo, axis=axis) return par, p_lo, p_up
Get mean + quantile range from bootstrapped params.
def appendDatastore(self, store): if not isinstance(store, Datastore): raise TypeError("stores must be of type %s" % Datastore) self._stores.append(store)
Appends datastore `store` to this collection.
def chi_perp_from_mass1_mass2_xi2(mass1, mass2, xi2): q = q_from_mass1_mass2(mass1, mass2) a1 = 2 + 3 * q / 2 a2 = 2 + 3 / (2 * q) return q**2 * a2 / a1 * xi2
Returns the in-plane spin from mass1, mass2, and xi2 for the secondary mass.
def tail(self, path, tail_length=1024, append=False): if not path: raise InvalidInputException("tail: no path given") block_size = self.serverdefaults()['blockSize'] if tail_length > block_size: raise InvalidInputException("tail: currently supports length up to the block ...
Show the end of the file - default 1KB, supports up to the Hadoop block size. :param path: Path to read :type path: string :param tail_length: The length to read from the end of the file - default 1KB, up to block size. :type tail_length: int :param append: Currently not impleme...
def raw_command(self, lun, netfn, raw_bytes): return self.interface.send_and_receive_raw(self.target, lun, netfn, raw_bytes)
Send the raw command data and return the raw response. lun: the logical unit number netfn: the network function raw_bytes: the raw message as bytestring Returns the response as bytestring.
def admin_tools_render_menu_css(context, menu=None): if menu is None: menu = get_admin_menu(context) context.update({ 'template': 'admin_tools/menu/css.html', 'css_files': menu.Media.css, }) return context
Template tag that renders the menu css files,, it takes an optional ``Menu`` instance as unique argument, if not given, the menu will be retrieved with the ``get_admin_menu`` function.
def _tree_view_builder(self, indent=0, is_root=True): def pad_text(indent): return " " * indent + "|-- " lines = list() if is_root: lines.append(SP_DIR) lines.append( "%s%s (%s)" % (pad_text(indent), self.shortname, self.fullname) ) ...
Build a text to represent the package structure.
def rename(args): p = OptionParser(rename.__doc__) opts, args = p.parse_args(args) if len(args) != 2: sys.exit(not p.print_help()) ingff3, switch = args switch = DictFile(switch) gff = Gff(ingff3) for g in gff: id, = g.attributes["ID"] newname = switch.get(id, id) ...
%prog rename in.gff3 switch.ids > reindexed.gff3 Change the IDs within the gff3.
def sort_values(expr, by, ascending=True): if not isinstance(by, list): by = [by, ] by = [it(expr) if inspect.isfunction(it) else it for it in by] return SortedCollectionExpr(expr, _sorted_fields=by, _ascending=ascending, _schema=expr._schema)
Sort the collection by values. `sort` is an alias name for `sort_values` :param expr: collection :param by: the sequence or sequences to sort :param ascending: Sort ascending vs. descending. Sepecify list for multiple sort orders. If this is a list of bools, must match the length of t...
def _get(self): c = self.theLookahead self.theLookahead = None if c == None: c = self.instream.read(1) if c >= ' ' or c == '\n': return c if c == '': return '\000' if c == '\r': return '\n' return ' '
return the next character from stdin. Watch out for lookahead. If the character is a control character, translate it to a space or linefeed.
def unwrap(self, value, session=None): self.validate_unwrap(value) ret = [] for field, value in izip(self.types, value): ret.append(field.unwrap(value, session=session)) return tuple(ret)
Validate and then unwrap ``value`` for object creation. :param value: list returned from the database.
def _load_significant_pathways_file(path_to_file): feature_pathway_df = pd.read_table( path_to_file, header=0, usecols=["feature", "side", "pathway"]) feature_pathway_df = feature_pathway_df.sort_values( by=["feature", "side"]) return feature_pathway_df
Read in the significant pathways file as a pandas.DataFrame.
def policy_net(rng_key, batch_observations_shape, num_actions, bottom_layers=None): if bottom_layers is None: bottom_layers = [] bottom_layers.extend([layers.Dense(num_actions), layers.LogSoftmax()]) net = layers.Serial(*bottom_layers) return net.initialize(batch...
A policy net function.
def _times_to_hours_after_local_midnight(times): times = times.tz_localize(None) hrs = 1 / NS_PER_HR * ( times.astype(np.int64) - times.normalize().astype(np.int64)) return np.array(hrs)
convert local pandas datetime indices to array of hours as floats
def on_open(self, info): self.ip = info.ip self.request = info self.open()
sockjs-tornado on_open handler
def strip_ip_port(ip_address): if '.' in ip_address: cleaned_ip = ip_address.split(':')[0] elif ']:' in ip_address: cleaned_ip = ip_address.rpartition(':')[0][1:-1] else: cleaned_ip = ip_address return cleaned_ip
Strips the port from an IPv4 or IPv6 address, returns a unicode object.
def get_attribute(self): attributes = ['dependencies', 'publics', 'members', 'types', 'executables'] if self.context.el_type in [Function, Subroutine]: attribute = attributes[4] elif self.context.el_type == CustomType: attribute = attributes[3] ...
Gets the appropriate module attribute name for a collection corresponding to the context's element type.
def insert_text(self, s, from_undo=False): return super().insert_text( ''.join(c for c in s if c in '0123456789'), from_undo )
Natural numbers only.
def currentSelected(self): if self.commaRadioButton.isChecked(): return ',' elif self.semicolonRadioButton.isChecked(): return ';' elif self.tabRadioButton.isChecked(): return '\t' elif self.otherRadioButton.isChecked(): return self.otherSe...
Returns the currently selected delimiter character. Returns: str: One of `,`, `;`, `\t`, `*other*`.
def cli(env): manager = AccountManager(env.client) summary = manager.get_summary() env.fout(get_snapshot_table(summary))
Prints some various bits of information about an account
def process(self): var_name = self.name_edt.text() try: self.var_name = str(var_name) except UnicodeEncodeError: self.var_name = to_text_string(var_name) if self.text_widget.get_as_data(): self.clip_data = self._get_table_data() elif se...
Process the data from clipboard
def parts(self): try: return self._pparts except AttributeError: self._pparts = tuple(self._parts) return self._pparts
An object providing sequence-like access to the components in the filesystem path.
def find_parent_split(node, orientation): if (node and node.orientation == orientation and len(node.children) > 1): return node if not node or node.type == "workspace": return None return find_parent_split(node.parent, orientation)
Find the first parent split relative to the given node according to the desired orientation
def filtre(liste_base, criteres) -> groups.Collection: def choisi(ac): for cat, li in criteres.items(): v = ac[cat] if not (v in li): return False return True return groups.Collection(a for a in liste_base if choisi(a))
Return a filter list, bases on criteres :param liste_base: Acces list :param criteres: Criteria { `attribut`:[valeurs,...] }
def _schemaPrepareInsert(self, store): for name, atr in self.getSchema(): atr.prepareInsert(self, store)
Prepare each attribute in my schema for insertion into a given store, either by upgrade or by creation. This makes sure all references point to this store and all relative paths point to this store's files directory.
def set(self, value: Optional[bool]): prev_value = self._value self._value = value if self._value != prev_value: for event in self._events: event.set()
Sets current status of a check :param value: ``True`` (healthy), ``False`` (unhealthy), or ``None`` (unknown)
def mapping(self): return ( self._user_id_mapping, self._user_feature_mapping, self._item_id_mapping, self._item_feature_mapping, )
Return the constructed mappings. Invert these to map internal indices to external ids. Returns ------- (user id map, user feature map, item id map, item id map): tuple of dictionaries
def pmag_angle(D1,D2): D1 = numpy.array(D1) if len(D1.shape) > 1: D1 = D1[:,0:2] else: D1 = D1[:2] D2 = numpy.array(D2) if len(D2.shape) > 1: D2 = D2[:,0:2] else: D2 = D2[:2] X1 = dir2cart(D1) X2 = dir2cart(D2) angles = [] for k in range(X1.shape[0]): angl...
finds the angle between lists of two directions D1,D2
def get_schema_type_name(node, context): query_path = node.query_path if query_path not in context.query_path_to_location_info: raise AssertionError( u'Unable to find type name for query path {} with context {}.'.format( query_path, context)) location_info = context.query...
Return the GraphQL type name of a node.
def timedelta_to_days(td): seconds_in_day = 24. * 3600. days = td.days + (td.seconds + (td.microseconds * 10.e6)) / seconds_in_day return days
Convert a `datetime.timedelta` object to a total number of days. Parameters ---------- td : `datetime.timedelta` instance Returns ------- days : float Total number of days in the `datetime.timedelta` object. Examples -------- >>> td = datetime.timedelta(4.5) >>> td ...
def h5ToDict(h5, readH5pyDataset=True): h = h5py.File(h5, "r") ret = unwrapArray(h, recursive=True, readH5pyDataset=readH5pyDataset) if readH5pyDataset: h.close() return ret
Read a hdf5 file into a dictionary
def _is_valid_api_url(self, url): data = {} try: r = requests.get(url, proxies=self.proxy_servers) content = to_text_string(r.content, encoding='utf-8') data = json.loads(content) except Exception as error: logger.error(str(error)) return d...
Callback for is_valid_api_url.
def pagerank_lazy_push(s, r, w_i, a_i, push_node, rho, lazy): A = rho*r[push_node] B = (1-rho)*(1 - lazy)*r[push_node] C = (1-rho)*lazy*(r[push_node]) s[push_node] += A r[push_node] = C r[a_i] += B * w_i
Performs a random step with a self-loop. Introduced in: Andersen, R., Chung, F., & Lang, K. (2006, October). Local graph partitioning using pagerank vectors. In Foundations of Computer Science, 2006. FOCS'06. 47th Annual IEEE Symposium on (pp. 475-486). IEEE.
def compose(*functions): return functools.reduce(lambda f, g: lambda x: f(g(x)), functions, identity)
Function composition on a series of functions. Remember that function composition runs right-to-left: `f . g . h = f(g(h(x)))`. As a unix pipeline, it would be written: `h | g | f`. From https://mathieularose.com/function-composition-in-python/.
def get_slice(self, thin_start=None, thin_interval=None, thin_end=None): if thin_start is None: thin_start = int(self.thin_start) else: thin_start = int(thin_start) if thin_interval is None: thin_interval = self.thin_interval else: thin_int...
Formats a slice using the given arguments that can be used to retrieve a thinned array from an InferenceFile. Parameters ---------- thin_start : int, optional The starting index to use. If None, will use the ``thin_start`` attribute. thin_interval : int, ...
def _request_address(self): if not self._request_address_val: template = ( 'https://sb-ssl.google.com/safebrowsing/api/lookup' '?client={0}&key={1}&appver={2}&pver={3}' ) self._request_address_val = template.format( self.client_...
Get address of a POST request to the service.
def connect(self, timeout=None): assert not self._running maybe_timeout = future_timeout_manager(timeout) self._logger.debug('Starting katcp client') self.katcp_client.start() try: yield maybe_timeout(self.katcp_client.until_running()) self._logger.debug('...
Connect to KATCP interface, starting what is needed Parameters ---------- timeout : float, None Time to wait until connected. No waiting if None. Raises ------ :class:`tornado.gen.TimeoutError` if the connect timeout expires
def _invert_all(self): set = self._datastore.setbyte get = self._datastore.getbyte for p in xrange(self._datastore.byteoffset, self._datastore.byteoffset + self._datastore.bytelength): set(p, 256 + ~get(p))
Invert every bit.
def get_entry_text(self, fname): if fname.split('.')[-1] == 'gz': with gz.open(fname, 'rt') as f: filetext = f.read() else: with codecs.open(fname, 'r') as f: filetext = f.read() return filetext
Retrieve the raw text from a file.
def generate_megaman_data(sampling=2): data = get_megaman_image() x = np.arange(sampling * data.shape[1]) / float(sampling) y = np.arange(sampling * data.shape[0]) / float(sampling) X, Y = map(np.ravel, np.meshgrid(x, y)) C = data[np.floor(Y.max() - Y).astype(int), np.floor(X).astype(in...
Generate 2D point data of the megaman image
def remove(self, workflow_id): try: db = self._client[self.database] fs = GridFSProxy(GridFS(db.unproxied_object)) for grid_doc in fs.find({"workflow_id": workflow_id}, no_cursor_timeout=True): fs.delete(grid_doc._id) ...
Removes a document specified by its id from the data store. All associated GridFs documents are deleted as well. Args: workflow_id (str): The id of the document that represents a workflow run. Raises: DataStoreNotConnected: If the data store is not connected to the ser...
def get_home_position(boatd=None): if boatd is None: boatd = Boatd() content = boatd.get('/waypoints') home = content.get('home', None) if home is not None: lat, lon = home return Point(lat, lon) else: return None
Get the current home position from boatd. :returns: The configured home position :rtype: Points
def block_stat(self, multihash, **kwargs): args = (multihash,) return self._client.request('/block/stat', args, decoder='json', **kwargs)
Returns a dict with the size of the block with the given hash. .. code-block:: python >>> c.block_stat('QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDxdXBFca7D') {'Key': 'QmTkzDwWqPbnAh5YiV5VwcTLnGdwSNsNTn2aDxdXBFca7D', 'Size': 258} Parameters ---------- m...
def bootstrap_css(): rendered_urls = [render_link_tag(bootstrap_css_url())] if bootstrap_theme_url(): rendered_urls.append(render_link_tag(bootstrap_theme_url())) return mark_safe("".join([url for url in rendered_urls]))
Return HTML for Bootstrap CSS. Adjust url in settings. If no url is returned, we don't want this statement to return any HTML. This is intended behavior. Default value: ``None`` This value is configurable, see Settings section **Tag name**:: bootstrap_css **Usage**:: {%...
def _convert_from(data): try: module, klass_name = data['__class__'].rsplit('.', 1) klass = getattr(import_module(module), klass_name) except (ImportError, AttributeError, KeyError): return data return deserialize(klass, data['__value__'])
Internal function that will be hooked to the native `json.loads` Find the right deserializer for a given value, taking into account the internal deserializer registry.
def format_usage(self, usage): msg = '\nUsage: %s\n' % self.indent_lines(textwrap.dedent(usage), " ") return msg
Ensure there is only one newline between usage and the first heading if there is no description.
def set_is_valid_rss(self): if self.title and self.link and self.description: self.is_valid_rss = True else: self.is_valid_rss = False
Check to if this is actually a valid RSS feed
def execute(self, command): pData = c_char_p(command) cbData = DWORD(len(command) + 1) hDdeData = DDE.ClientTransaction(pData, cbData, self._hConv, HSZ(), CF_TEXT, XTYP_EXECUTE, TIMEOUT_ASYNC, LPDWORD()) if not hDdeData: raise DDEError("Unable to send command", self._idInst) ...
Execute a DDE command.
def inflect(self): if self._inflect is None: import inflect self._inflect = inflect.engine() return self._inflect
Return instance of inflect.
def primitives(): z = randomZ(orderG1()) P,Q = randomG1(),randomG1() R = generatorG1() g1Add = P + Q g1ScalarMultiply = z*P g1GeneratorMultiply = z*R g1Hash = hashG1(hash_in) P,Q = randomG2(),randomG2() R = generatorG2() g2Add = P + Q g2ScalarMultiply = z*P g2GeneratorMul...
Perform primitive operations for profiling
def pipeline_name(self): if 'pipeline_name' in self.data and self.data.pipeline_name: return self.data.get('pipeline_name') elif self.stage.pipeline is not None: return self.stage.pipeline.data.name else: return self.stage.data.pipeline_name
Get pipeline name of current job instance. Because instantiating job instance could be performed in different ways and those return different results, we have to check where from to get name of the pipeline. :return: pipeline name.
def save(self, path): with io.open(path, 'wb') as fout: return pickle.dump(dict(self.weights), fout)
Save the pickled model weights.
def _validate_edata(self, edata): if edata is None: return True if not (isinstance(edata, dict) or _isiterable(edata)): return False edata = [edata] if isinstance(edata, dict) else edata for edict in edata: if (not isinstance(edict, dict)) or ( ...
Validate edata argument of raise_exception_if method.
def lte(max_value): def validate(value): if value > max_value: return e("{} is not less than or equal to {}", value, max_value) return validate
Validates that a field value is less than or equal to the value given to this validator.
def disconnect(self, func=None): if func is None: self._connections = [] else: self._connections.remove(func)
Disconnect a function call to the signal. If None, all connections are disconnected
def blend(self, other, percent=0.5): dest = 1.0 - percent rgb = tuple(((u * percent) + (v * dest) for u, v in zip(self.__rgb, other.__rgb))) a = (self.__a * percent) + (other.__a * dest) return Color(rgb, 'rgb', a, self.__wref)
blend this color with the other one. Args: :other: the grapefruit.Color to blend with this one. Returns: A grapefruit.Color instance which is the result of blending this color on the other one. >>> c1 = Color.from_rgb(1, 0.5, 0, 0.2) >>> c2 = Color.from_rgb(1, 1, 1, 0.6) ...
def in_chain(cls, client, chain_id, expiration_dates=[]): request_url = "https://api.robinhood.com/options/instruments/" params = { "chain_id": chain_id, "expiration_dates": ",".join(expiration_dates) } data = client.get(request_url, params=params) results...
fetch all option instruments in an options chain - expiration_dates = optionally scope
def _special_value_rows(em): if em.tagName == 'textarea': return convertToIntRange(em.getAttribute('rows', 2), minValue=1, maxValue=None, invalidDefault=2) else: return em.getAttribute('rows', '')
_special_value_rows - Handle "rows" special attribute, which differs if tagName is a textarea or frameset
def _constrain_L2_grad(op, grad): inp = op.inputs[0] inp_norm = tf.norm(inp) unit_inp = inp / inp_norm grad_projection = dot(unit_inp, grad) parallel_grad = unit_inp * grad_projection is_in_ball = tf.less_equal(inp_norm, 1) is_pointed_inward = tf.less(grad_projection, 0) allow_grad = tf.logical_or(is_in...
Gradient for constrained optimization on an L2 unit ball. This function projects the gradient onto the ball if you are on the boundary (or outside!), but leaves it untouched if you are inside the ball. Args: op: the tensorflow op we're computing the gradient for. grad: gradient we need to backprop Re...
def thumbnail_url(source, alias): try: thumb = get_thumbnailer(source)[alias] except Exception: return '' return thumb.url
Return the thumbnail url for a source file using an aliased set of thumbnail options. If no matching alias is found, returns an empty string. Example usage:: <img src="{{ person.photo|thumbnail_url:'small' }}" alt="">
def load_weight(weight_file: str, weight_name: str, weight_file_cache: Dict[str, Dict]) -> mx.nd.NDArray: logger.info('Loading input weight file: %s', weight_file) if weight_file.endswith(".npy"): return np.load(weight_file) elif weight_file.endswith(".npz"): ...
Load wight fron a file or the cache if it was loaded before. :param weight_file: Weight file. :param weight_name: Weight name. :param weight_file_cache: Cache of loaded files. :return: Loaded weight.
def _getResourceClass(self): if self.fromVirtualEnv: subcls = VirtualEnvResource elif os.path.isdir(self._resourcePath): subcls = DirectoryResource elif os.path.isfile(self._resourcePath): subcls = FileResource elif os.path.exists(self._resourcePath): ...
Return the concrete subclass of Resource that's appropriate for auto-deploying this module.
def merge_list_members(self, list_, record_data, merge_rule): list_ = list_.get_soap_object(self.client) record_data = record_data.get_soap_object(self.client) merge_rule = merge_rule.get_soap_object(self.client) return MergeResult(self.call('mergeListMembers', list_, record_data, merge_...
Responsys.mergeListMembers call Accepts: InteractObject list_ RecordData record_data ListMergeRule merge_rule Returns a MergeResult
def _doIdRes(self, message, endpoint, return_to): self._idResCheckForFields(message) if not self._checkReturnTo(message, return_to): raise ProtocolError( "return_to does not match return URL. Expected %r, got %r" % (return_to, message.getArg(OPENID_NS, 'return...
Handle id_res responses that are not cancellations of immediate mode requests. @param message: the response paramaters. @param endpoint: the discovered endpoint object. May be None. @raises ProtocolError: If the message contents are not well-formed according to the OpenID s...
def remove(self, *values): for value in objecttools.extract(values, (str, variabletools.Variable)): try: deleted_something = False for fn2var in list(self._type2filename2variable.values()): for fn_, var in list(fn2var.items()): ...
Remove the defined variables. The variables to be removed can be selected in two ways. But the first example shows that passing nothing or an empty iterable to method |Variable2Auxfile.remove| does not remove any variable: >>> from hydpy import dummies >>> v2af = dummies.v2af ...
def add_effect(self, effect): effect.register_scene(self._scene) self._effects.append(effect)
Add an Effect to the Frame. :param effect: The Effect to be added.
def clear_repository_helper(reserve_fn, clear_fn, retry=5, reservation=None): if reservation is None: reservation = reserve_fn() reservation = _clear_repository(reserve_fn, clear_fn, INITIATE_ERASE, retry, reservation) time.sleep(0.5) reservation = _clear_repo...
Helper function to start repository erasure and wait until finish. This helper is used by clear_sel and clear_sdr_repository.
def wait_for_ajax_calls_to_complete(self, timeout=5): from selenium.webdriver.support.ui import WebDriverWait WebDriverWait(self.driver, timeout).until(lambda s: s.execute_script("return jQuery.active === 0"))
Waits until there are no active or pending ajax requests. Raises TimeoutException should silence not be had. :param timeout: time to wait for silence (default: 5 seconds) :return: None
def url_param(param, default=None): if request.args.get(param): return request.args.get(param, default) if request.form.get('form_data'): form_data = json.loads(request.form.get('form_data')) url_params = form_data.get('url_params') or {} return url_params.get(param, default) ...
Read a url or post parameter and use it in your SQL Lab query When in SQL Lab, it's possible to add arbitrary URL "query string" parameters, and use those in your SQL code. For instance you can alter your url and add `?foo=bar`, as in `{domain}/superset/sqllab?foo=bar`. Then if your query is something ...
def sign_message(body: ByteString, secret: Text) -> Text: return 'sha1={}'.format( hmac.new(secret.encode(), body, sha1).hexdigest() )
Compute a message's signature.
def register_lookup_handler(lookup_type, handler_or_path): handler = handler_or_path if isinstance(handler_or_path, basestring): handler = load_object_from_string(handler_or_path) LOOKUP_HANDLERS[lookup_type] = handler if type(handler) != type: logger = logging.getLogger(__name__) ...
Register a lookup handler. Args: lookup_type (str): Name to register the handler under handler_or_path (OneOf[func, str]): a function or a path to a handler
def edit(self, layer, item, delete=False): if hasattr(self, layer): layer_obj = getattr(self, layer) else: raise AttributeError('missing layer: %s', layer) if delete: return layer_obj for k, v in item.iteritems(): if k in layer_obj.layer: ...
Edit model. :param layer: Layer of model to edit :type layer: str :param item: Items to edit. :type item: dict :param delete: Flag to return :class:`~simkit.core.layers.Layer` to delete item. :type delete: bool
def delete(args): with _catalog(args) as cat: n = len(cat) cat.delete(args.args[0]) args.log.info('{0} objects deleted'.format(n - len(cat))) return n - len(cat)
cdstarcat delete OID Delete an object specified by OID from CDSTAR.
def find_executable(name): for pt in os.environ.get('PATH', '').split(':'): candidate = os.path.join(pt, name) if os.path.exists(candidate): return candidate
Finds the actual path to a named command. The first one on $PATH wins.
def _add_filestore_resources(self, filestore_resources, create_default_views, hxl_update): for resource in filestore_resources: for created_resource in self.data['resources']: if resource['name'] == created_resource['name']: merge_two_dictionaries(resource.data, c...
Helper method to create files in filestore by updating resources. Args: filestore_resources (List[hdx.data.Resource]): List of resources that use filestore (to be appended to) create_default_views (bool): Whether to call package_create_default_resource_views. hxl_update (boo...
def get_ploidy(items, region=None): chrom = chromosome_special_cases(region[0] if isinstance(region, (list, tuple)) else None) ploidy = _configured_ploidy(items) sexes = _configured_genders(items) if chrom == "mitochondrial": return ploidy.get("mitochondrial"...
Retrieve ploidy of a region, handling special cases.
def custom_object_prefix_strict(instance): if (instance['type'] not in enums.TYPES and instance['type'] not in enums.RESERVED_OBJECTS and not CUSTOM_TYPE_PREFIX_RE.match(instance['type'])): yield JSONError("Custom object type '%s' should start with 'x-' " "fol...
Ensure custom objects follow strict naming style conventions.
def upsert(self, insert_index, val, fn=None): fn = fn or (lambda current, passed: passed) self._magnitude = 0 position = self.position_for_index(insert_index) if position < len(self.elements) and self.elements[position] == insert_index: self.elements[position + 1] = fn(self.e...
Inserts or updates an existing index within the vector. Args: - insert_index (int): The index at which the element should be inserted. - val (int|float): The value to be inserted into the vector. - fn (callable, optional): An optional callable taking two ...
def peek(self, session, address, width): if width == 8: return self.peek_8(session, address) elif width == 16: return self.peek_16(session, address) elif width == 32: return self.peek_32(session, address) elif width == 64: return self.peek_...
Read an 8, 16, 32, or 64-bit value from the specified address. Corresponds to viPeek* functions of the VISA library. :param session: Unique logical identifier to a session. :param address: Source address to read the value. :param width: Number of bits to read. :return: Data rea...
def _auth(url, user, passwd, realm): basic = _HTTPBasicAuthHandler() basic.add_password(realm=realm, uri=url, user=user, passwd=passwd) digest = _HTTPDigestAuthHandler() digest.add_password(realm=realm, uri=url, user=user, passwd=passwd) return _build_opener(basic, digest)
returns a authentication handler.
def process_alt(header, ref, alt_str): if "]" in alt_str or "[" in alt_str: return record.BreakEnd(*parse_breakend(alt_str)) elif alt_str[0] == "." and len(alt_str) > 0: return record.SingleBreakEnd(record.FORWARD, alt_str[1:]) elif alt_str[-1] == "." and len(alt_str) > 0: return rec...
Process alternative value using Header in ``header``
def isscalar(cls, dataset, dim): if not dataset.data: return True ds = cls._inner_dataset_template(dataset) isscalar = [] for d in dataset.data: ds.data = d isscalar.append(ds.interface.isscalar(ds, dim)) return all(isscalar)
Tests if dimension is scalar in each subpath.
def get_requires(self, profile=None): out = [] for req in self.requires: if ((req.profile and not profile) or (req.profile and profile and req.profile != profile)): continue out.append(req) return out
Get filtered list of Require objects in this Feature :param str profile: Return Require objects with this profile or None to return all Require objects. :return: list of Require objects
def view_dupl_sources_time(token, dstore): info = dstore['source_info'] items = sorted(group_array(info.value, 'source_id').items()) tbl = [] tot_time = 0 for source_id, records in items: if len(records) > 1: calc_time = records['calc_time'].sum() tot_time += calc_tim...
Display the time spent computing duplicated sources
def add_children(d, key, **kwarg): if kwarg: d[key] = {_meta: kwarg} else: d[key] = dict()
Add a children with key and attributes. If children already EXISTS, OVERWRITE it. Usage:: >>> from pprint import pprint as ppt >>> DT.add_children(d, "VA", name="virginia", population=100*1000) >>> DT.add_children(d, "MD", name="maryland", population=200*1000) ...
def _responsify(api_spec, error, status): result_json = api_spec.model_to_json(error) r = jsonify(result_json) r.status_code = status return r
Take a bravado-core model representing an error, and return a Flask Response with the given error code and error instance as body
def dbfpack(fn, usecols=None): loadfunc = pulldbf.dbf_asdict cp = ChannelPack(loadfunc) cp.load(fn, usecols) names = pulldbf.channel_names(fn, usecols) cp.set_channel_names(names) return cp
Return a ChannelPack instance loaded with dbf data file fn. This is a lazy function to get a loaded instance, using pulldbf module.
def call(self, additional_fields, restriction, shape, depth, max_items, offset): from .folders import Folder roots = {f.root for f in self.folders} if len(roots) != 1: raise ValueError('FindFolder must be called with folders in the same root hierarchy (%r)' % roots) root = ro...
Find subfolders of a folder. :param additional_fields: the extra fields that should be returned with the folder, as FieldPath objects :param shape: The set of attributes to return :param depth: How deep in the folder structure to search for folders :param max_items: The maximum number o...
def edit_block(object): @functools.wraps(object) def edit_block_wrapper(*args, **kwargs): if args: cursor = foundations.common.get_first_item(args).textCursor() cursor.beginEditBlock() value = None try: value = object(*args, **kwargs) finally: ...
Handles edit blocks undo states. :param object: Object to decorate. :type object: object :return: Object. :rtype: object
def downsample_completeness_table(comp_table, sample_width=0.1, mmax=None): new_comp_table = [] for i in range(comp_table.shape[0] - 1): mvals = np.arange(comp_table[i, 1], comp_table[i + 1, 1], d_m) new_comp_table.extend([[comp_table[i, 0], mval] for mval in mvals]) ...
Re-sample the completeness table to a specified sample_width
def find_cuda(): for fldr in os.environ['PATH'].split(os.pathsep): cuda_path = join(fldr, 'nvcc') if os.path.exists(cuda_path): cuda_path = os.path.dirname(os.path.dirname(cuda_path)) break cuda_path = None if cuda_path is None: print 'w> nvcc compiler cou...
Locate the CUDA environment on the system.
def _fail_early(message, **kwds): import json output = dict(kwds) output.update({ 'msg': message, 'failed': True, }) print(json.dumps(output)) sys.exit(1)
The module arguments are dynamically generated based on the Opsview version. This means that fail_json isn't available until after the module has been properly initialized and the schemas have been loaded.
def _search(self, limit, format): url = self.QUERY_URL.format(requests.utils.quote("'{}'".format(self.query)), min(50, limit), self.current_offset, format) r = requests.get(url, auth=("", self.api_key)) try: json_results = r.json() except ValueError as vE: if not ...
Returns a list of result objects, with the url for the next page bing search url.
def presets_dir(): default_presets_dir = os.path.join( os.path.expanduser("~"), ".be", "presets") presets_dir = os.environ.get(BE_PRESETSDIR) or default_presets_dir if not os.path.exists(presets_dir): os.makedirs(presets_dir) return presets_dir
Return presets directory
def build_reduce(function: Callable[[Any, Any], Any] = None, *, init: Any = NONE): _init = init def _build_reduce(function: Callable[[Any, Any], Any]): @wraps(function) def _wrapper(init=NONE) -> Reduce: init = _init if init is NONE else init if init is N...
Decorator to wrap a function to return a Reduce operator. :param function: function to be wrapped :param init: optional initialization for state
def get_servo_angle(self): servoposition = self.get_servo_position() if (self.servomodel==0x06) or (self.servomodel == 0x04): return scale(servoposition, 10627, 22129, -159.9, 159.6) else: return scale(servoposition, 21, 1002, -150, 150)
Gets the current angle of the servo in degrees Args: none Returns: int : the current servo angle