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(module (function_definition (function_name_get) function_name_get (parameters (identifier_self) identifier_self (identifier_key) identifier_key )parameters (block (try_statement (block (expression_statement (assignment (identifier_layers) identifier_layers (call (attribute (identifier_key) identifier_key (identifier_split) identifier_split )attribute (argument_list (string_'.') string_'.' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_value) identifier_value (attribute (identifier_self) identifier_self (identifier_registrar) identifier_registrar )attribute )assignment )expression_statement (for_statement (identifier_key) identifier_key (identifier_layers) identifier_layers (block (expression_statement (assignment (identifier_value) identifier_value (subscript (identifier_value) identifier_value (identifier_key) identifier_key )subscript )assignment )expression_statement )block )for_statement (return_statement (identifier_value) identifier_value )return_statement )block (except_clause (block (return_statement (None) None )return_statement )block )except_clause )try_statement )block )function_definition )module
Function deeply gets the key with "." notation Args ---- key (string): A key with the "." notation. Returns ------- reg (unknown type): Returns a dict or a primitive type.
(module (function_definition (function_name_set_timestamp) function_name_set_timestamp (parameters (identifier_self) identifier_self (default_parameter (identifier_timestamp) identifier_timestamp (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_timestamp) identifier_timestamp (None) None )comparison_operator (block (import_statement (dotted_name (identifier_time) identifier_time )dotted_name )import_statement (expression_statement (assignment (identifier_timestamp) identifier_timestamp (call (attribute (identifier_time) identifier_time (identifier_strftime) identifier_strftime )attribute (argument_list (string_'%Y-%m-%dT%H:%M:%S%Z') string_'%Y-%m-%dT%H:%M:%S%Z' )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_node) identifier_node )attribute (identifier_set) identifier_set )attribute (argument_list (string_'timestamp') string_'timestamp' (identifier_timestamp) identifier_timestamp )argument_list )call )expression_statement )block )function_definition )module
Set the timestamp of the linguistic processor, set to None for the current time @type timestamp:string @param timestamp: version of the linguistic processor
(module (function_definition (function_name_upload) function_name_upload (parameters (identifier_self) identifier_self (identifier_local_path) identifier_local_path )parameters (block (expression_statement (assignment (identifier_camerafile_p) identifier_camerafile_p (call (attribute (identifier_ffi) identifier_ffi (identifier_new) identifier_new )attribute (argument_list (string_"CameraFile**") string_"CameraFile**" )argument_list )call )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_local_path) identifier_local_path (string_'rb') string_'rb' )argument_list )call (as_pattern_target (identifier_fp) identifier_fp )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_lib) identifier_lib (identifier_gp_file_new_from_fd) identifier_gp_file_new_from_fd )attribute (argument_list (identifier_camerafile_p) identifier_camerafile_p (call (attribute (identifier_fp) identifier_fp (identifier_fileno) identifier_fileno )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_lib) identifier_lib (identifier_gp_camera_folder_put_file) identifier_gp_camera_folder_put_file )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier__cam) identifier__cam )attribute (identifier__cam) identifier__cam )attribute (binary_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_path) identifier_path )attribute (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call (string_b"/") string_b"/" )binary_operator (call (attribute (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_basename) identifier_basename )attribute (argument_list (identifier_local_path) identifier_local_path )argument_list )call (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call (subscript (attribute (identifier_backend) identifier_backend (identifier_FILE_TYPES) identifier_FILE_TYPES )attribute (string_'normal') string_'normal' )subscript (subscript (identifier_camerafile_p) identifier_camerafile_p (integer_0) integer_0 )subscript (attribute (attribute (identifier_self) identifier_self (identifier__cam) identifier__cam )attribute (identifier_ctx) identifier_ctx )attribute )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Upload a file to the camera's permanent storage. :param local_path: Path to file to copy :type local_path: str/unicode
(module (function_definition (function_name_mcscanx) function_name_mcscanx (parameters (identifier_args) identifier_args )parameters (block (expression_statement (assignment (identifier_p) identifier_p (call (identifier_OptionParser) identifier_OptionParser (argument_list (attribute (identifier_mcscanx) identifier_mcscanx (identifier___doc__) identifier___doc__ )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_opts) identifier_opts (identifier_args) identifier_args )pattern_list (call (attribute (identifier_p) identifier_p (identifier_parse_args) identifier_parse_args )attribute (argument_list (identifier_args) identifier_args )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call (integer_2) integer_2 )comparison_operator (block (expression_statement (call (attribute (identifier_sys) identifier_sys (identifier_exit) identifier_exit )attribute (argument_list (not_operator (call (attribute (identifier_p) identifier_p (identifier_print_help) identifier_print_help )attribute (argument_list )argument_list )call )not_operator )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_blastfile) identifier_blastfile (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_bedfiles) identifier_bedfiles (subscript (identifier_args) identifier_args (slice (integer_1) integer_1 (colon) colon )slice )subscript )assignment )expression_statement (expression_statement (assignment (identifier_prefix) identifier_prefix (call (attribute (string_"_") string_"_" (identifier_join) identifier_join )attribute (generator_expression (subscript (call (attribute (identifier_op) identifier_op (identifier_basename) identifier_basename )attribute (argument_list (identifier_x) identifier_x )argument_list )call (slice (colon) colon (integer_2) integer_2 )slice )subscript (for_in_clause (identifier_x) identifier_x (identifier_bedfiles) identifier_bedfiles )for_in_clause )generator_expression )call )assignment )expression_statement (expression_statement (call (identifier_symlink) identifier_symlink (argument_list (identifier_blastfile) identifier_blastfile (binary_operator (identifier_prefix) identifier_prefix (string_".blast") string_".blast" )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_allbedfile) identifier_allbedfile (binary_operator (identifier_prefix) identifier_prefix (string_".gff") string_".gff" )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_fw) identifier_fw (call (identifier_open) identifier_open (argument_list (identifier_allbedfile) identifier_allbedfile (string_"w") string_"w" )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_bedfile) identifier_bedfile )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_bedfiles) identifier_bedfiles )argument_list )call (block (expression_statement (assignment (identifier_prefix) identifier_prefix (call (identifier_chr) identifier_chr (argument_list (binary_operator (call (identifier_ord) identifier_ord (argument_list (string_'A') string_'A' )argument_list )call (identifier_i) identifier_i )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_make_gff) identifier_make_gff (argument_list (identifier_bedfile) identifier_bedfile (identifier_prefix) identifier_prefix (identifier_fw) identifier_fw )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_fw) identifier_fw (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
%prog mcscanx athaliana.athaliana.last athaliana.bed Wrap around MCScanX.
(module (function_definition (function_name_parse_line) function_name_parse_line (parameters (identifier_self) identifier_self (identifier_line) identifier_line )parameters (block (expression_statement (assignment (identifier_prefix) identifier_prefix (string_"") string_"" )assignment )expression_statement (if_statement (call (attribute (identifier_line) identifier_line (identifier_startswith) identifier_startswith )attribute (argument_list (string_",") string_"," )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_line) identifier_line (identifier_prefix) identifier_prefix )pattern_list (expression_list (subscript (identifier_line) identifier_line (slice (integer_1) integer_1 (colon) colon )slice )subscript (string_",") string_"," )expression_list )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_j) identifier_j (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (identifier_line) identifier_line )argument_list )call )assignment )expression_statement (expression_statement (yield (identifier_j) identifier_j )yield )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_io) identifier_io )attribute (identifier_write_line) identifier_write_line )attribute (argument_list (binary_operator (identifier_prefix) identifier_prefix (call (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (argument_list (identifier_j) identifier_j )argument_list )call )binary_operator )argument_list )call )expression_statement )block )function_definition )module
Parse a single line of JSON and write modified JSON back.
(module (function_definition (function_name_singularize) function_name_singularize (parameters (identifier_word) identifier_word (default_parameter (identifier_pos) identifier_pos (identifier_NOUN) identifier_NOUN )default_parameter (default_parameter (identifier_gender) identifier_gender (identifier_MALE) identifier_MALE )default_parameter (default_parameter (identifier_role) identifier_role (identifier_SUBJECT) identifier_SUBJECT )default_parameter (default_parameter (identifier_custom) identifier_custom (dictionary )dictionary )default_parameter )parameters (block (expression_statement (assignment (identifier_w) identifier_w (call (attribute (call (attribute (identifier_word) identifier_word (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (identifier_capitalize) identifier_capitalize )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_word) identifier_word (identifier_custom) identifier_custom )comparison_operator (block (return_statement (subscript (identifier_custom) identifier_custom (identifier_word) identifier_word )subscript )return_statement )block )if_statement (if_statement (comparison_operator (identifier_word) identifier_word (identifier_singular) identifier_singular )comparison_operator (block (return_statement (subscript (identifier_singular) identifier_singular (identifier_word) identifier_word )subscript )return_statement )block )if_statement (if_statement (comparison_operator (identifier_pos) identifier_pos (identifier_NOUN) identifier_NOUN )comparison_operator (block (for_statement (pattern_list (identifier_a) identifier_a (identifier_b) identifier_b )pattern_list (identifier_singular_inflections) identifier_singular_inflections (block (if_statement (call (attribute (identifier_w) identifier_w (identifier_endswith) identifier_endswith )attribute (argument_list (identifier_a) identifier_a )argument_list )call (block (return_statement (binary_operator (subscript (identifier_w) identifier_w (slice (colon) colon (unary_operator (call (identifier_len) identifier_len (argument_list (identifier_a) identifier_a )argument_list )call )unary_operator )slice )subscript (identifier_b) identifier_b )binary_operator )return_statement )block )if_statement )block )for_statement (for_statement (identifier_suffix) identifier_suffix (tuple (string_"nen") string_"nen" (string_"en") string_"en" (string_"n") string_"n" (string_"e") string_"e" (string_"er") string_"er" (string_"s") string_"s" )tuple (block (if_statement (call (attribute (identifier_w) identifier_w (identifier_endswith) identifier_endswith )attribute (argument_list (identifier_suffix) identifier_suffix )argument_list )call (block (expression_statement (assignment (identifier_w) identifier_w (subscript (identifier_w) identifier_w (slice (colon) colon (unary_operator (call (identifier_len) identifier_len (argument_list (identifier_suffix) identifier_suffix )argument_list )call )unary_operator )slice )subscript )assignment )expression_statement (break_statement )break_statement )block )if_statement )block )for_statement (if_statement (call (attribute (identifier_w) identifier_w (identifier_endswith) identifier_endswith )attribute (argument_list (tuple (string_"rr") string_"rr" (string_"rv") string_"rv" (string_"nz") string_"nz" )tuple )argument_list )call (block (return_statement (binary_operator (identifier_w) identifier_w (string_"e") string_"e" )binary_operator )return_statement )block )if_statement (return_statement (identifier_w) identifier_w )return_statement )block )if_statement (return_statement (identifier_w) identifier_w )return_statement )block )function_definition )module
Returns the singular of a given word. The inflection is based on probability rather than gender and role.
(module (function_definition (function_name_record) function_name_record (parameters (identifier_self) identifier_self )parameters (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier__initialized) identifier__initialized )attribute )not_operator (block (raise_statement (call (attribute (identifier_pycdlibexception) identifier_pycdlibexception (identifier_PyCdlibInternalError) identifier_PyCdlibInternalError )attribute (argument_list (string_'SF record not yet initialized!') string_'SF record not yet initialized!' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_length) identifier_length (integer_12) integer_12 )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_virtual_file_size_high) identifier_virtual_file_size_high )attribute (None) None )comparison_operator (block (expression_statement (assignment (identifier_length) identifier_length (integer_21) integer_21 )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_ret) identifier_ret (binary_operator (string_b'SF') string_b'SF' (call (attribute (identifier_struct) identifier_struct (identifier_pack) identifier_pack )attribute (argument_list (string_'=BB') string_'=BB' (identifier_length) identifier_length (identifier_SU_ENTRY_VERSION) identifier_SU_ENTRY_VERSION )argument_list )call )binary_operator )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (attribute (identifier_self) identifier_self (identifier_virtual_file_size_high) identifier_virtual_file_size_high )attribute (None) None )comparison_operator (comparison_operator (attribute (identifier_self) identifier_self (identifier_table_depth) identifier_table_depth )attribute (None) None )comparison_operator )boolean_operator (block (expression_statement (augmented_assignment (identifier_ret) identifier_ret (call (attribute (identifier_struct) identifier_struct (identifier_pack) identifier_pack )attribute (argument_list (string_'=LLLLB') string_'=LLLLB' (attribute (identifier_self) identifier_self (identifier_virtual_file_size_high) identifier_virtual_file_size_high )attribute (call (attribute (identifier_utils) identifier_utils (identifier_swab_32bit) identifier_swab_32bit )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_virtual_file_size_high) identifier_virtual_file_size_high )attribute )argument_list )call (attribute (identifier_self) identifier_self (identifier_virtual_file_size_low) identifier_virtual_file_size_low )attribute (call (attribute (identifier_utils) identifier_utils (identifier_swab_32bit) identifier_swab_32bit )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_virtual_file_size_low) identifier_virtual_file_size_low )attribute )argument_list )call (attribute (identifier_self) identifier_self (identifier_table_depth) identifier_table_depth )attribute )argument_list )call )augmented_assignment )expression_statement )block (else_clause (block (expression_statement (augmented_assignment (identifier_ret) identifier_ret (call (attribute (identifier_struct) identifier_struct (identifier_pack) identifier_pack )attribute (argument_list (string_'=LL') string_'=LL' (attribute (identifier_self) identifier_self (identifier_virtual_file_size_low) identifier_virtual_file_size_low )attribute (call (attribute (identifier_utils) identifier_utils (identifier_swab_32bit) identifier_swab_32bit )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_virtual_file_size_low) identifier_virtual_file_size_low )attribute )argument_list )call )argument_list )call )augmented_assignment )expression_statement )block )else_clause )if_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Generate a string representing the Rock Ridge Sparse File record. Parameters: None. Returns: String containing the Rock Ridge record.
(module (function_definition (function_name__load_history_from_file) function_name__load_history_from_file (parameters (identifier_path) identifier_path (default_parameter (identifier_size) identifier_size (unary_operator (integer_1) integer_1 )unary_operator )default_parameter )parameters (block (if_statement (comparison_operator (identifier_size) identifier_size (integer_0) integer_0 )comparison_operator (block (return_statement (list )list )return_statement )block )if_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_path) identifier_path )argument_list )call (block (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_codecs) identifier_codecs (identifier_open) identifier_open )attribute (argument_list (identifier_path) identifier_path (string_'r') string_'r' (keyword_argument (identifier_encoding) identifier_encoding (string_'utf-8') string_'utf-8' )keyword_argument )argument_list )call (as_pattern_target (identifier_histfile) identifier_histfile )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_lines) identifier_lines (list_comprehension (call (attribute (identifier_line) identifier_line (identifier_rstrip) identifier_rstrip )attribute (argument_list (string_'\n') string_'\n' )argument_list )call (for_in_clause (identifier_line) identifier_line (identifier_histfile) identifier_histfile )for_in_clause )list_comprehension )assignment )expression_statement )block )with_statement (if_statement (comparison_operator (identifier_size) identifier_size (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (identifier_lines) identifier_lines (subscript (identifier_lines) identifier_lines (slice (unary_operator (identifier_size) identifier_size )unary_operator (colon) colon )slice )subscript )assignment )expression_statement )block )if_statement (return_statement (identifier_lines) identifier_lines )return_statement )block (else_clause (block (return_statement (list )list )return_statement )block )else_clause )if_statement )block )function_definition )module
Load a history list from a file and split it into lines. :param path: the path to the file that should be loaded :type path: str :param size: the number of lines to load (0 means no lines, < 0 means all lines) :type size: int :returns: a list of history items (the lines of the file) :rtype: list(str)
(module (function_definition (function_name__is_num_param) function_name__is_num_param (parameters (identifier_names) identifier_names (identifier_values) identifier_values (default_parameter (identifier_to_float) identifier_to_float (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_fun) identifier_fun (boolean_operator (boolean_operator (identifier_to_float) identifier_to_float (identifier_float) identifier_float )boolean_operator (identifier_int) identifier_int )boolean_operator )assignment )expression_statement (expression_statement (assignment (identifier_out_params) identifier_out_params (list )list )assignment )expression_statement (for_statement (tuple_pattern (identifier_name) identifier_name (identifier_val) identifier_val )tuple_pattern (call (identifier_zip) identifier_zip (argument_list (identifier_names) identifier_names (identifier_values) identifier_values )argument_list )call (block (if_statement (comparison_operator (identifier_val) identifier_val (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_out_params) identifier_out_params (identifier_append) identifier_append )attribute (argument_list (identifier_val) identifier_val )argument_list )call )expression_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_val) identifier_val (identifier_number_or_string_types) identifier_number_or_string_types )argument_list )call (block (try_statement (block (expression_statement (call (attribute (identifier_out_params) identifier_out_params (identifier_append) identifier_append )attribute (argument_list (call (identifier_fun) identifier_fun (argument_list (identifier_val) identifier_val )argument_list )call )argument_list )call )expression_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (raise_statement (call (identifier_VdtParamError) identifier_VdtParamError (argument_list (identifier_name) identifier_name (identifier_val) identifier_val )argument_list )call )raise_statement )block )except_clause )try_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_VdtParamError) identifier_VdtParamError (argument_list (identifier_name) identifier_name (identifier_val) identifier_val )argument_list )call )raise_statement )block )else_clause )if_statement )block )for_statement (return_statement (identifier_out_params) identifier_out_params )return_statement )block )function_definition )module
Return numbers from inputs or raise VdtParamError. Lets ``None`` pass through. Pass in keyword argument ``to_float=True`` to use float for the conversion rather than int. >>> _is_num_param(('', ''), (0, 1.0)) [0, 1] >>> _is_num_param(('', ''), (0, 1.0), to_float=True) [0.0, 1.0] >>> _is_num_param(('a'), ('a')) # doctest: +SKIP Traceback (most recent call last): VdtParamError: passed an incorrect value "a" for parameter "a".
(module (function_definition (function_name_cmd_gimbal_mode) function_name_cmd_gimbal_mode (parameters (identifier_self) identifier_self (identifier_args) identifier_args )parameters (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call (integer_1) integer_1 )comparison_operator (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"usage: gimbal mode <GPS|MAVLink>") string_"usage: gimbal mode <GPS|MAVLink>" )argument_list )call )expression_statement (return_statement )return_statement )block )if_statement (if_statement (comparison_operator (call (attribute (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (string_'GPS') string_'GPS' )comparison_operator (block (expression_statement (assignment (identifier_mode) identifier_mode (attribute (attribute (identifier_mavutil) identifier_mavutil (identifier_mavlink) identifier_mavlink )attribute (identifier_MAV_MOUNT_MODE_GPS_POINT) identifier_MAV_MOUNT_MODE_GPS_POINT )attribute )assignment )expression_statement )block (elif_clause (comparison_operator (call (attribute (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (string_'MAVLINK') string_'MAVLINK' )comparison_operator (block (expression_statement (assignment (identifier_mode) identifier_mode (attribute (attribute (identifier_mavutil) identifier_mavutil (identifier_mavlink) identifier_mavlink )attribute (identifier_MAV_MOUNT_MODE_MAVLINK_TARGETING) identifier_MAV_MOUNT_MODE_MAVLINK_TARGETING )attribute )assignment )expression_statement )block )elif_clause (elif_clause (comparison_operator (call (attribute (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (string_'RC') string_'RC' )comparison_operator (block (expression_statement (assignment (identifier_mode) identifier_mode (attribute (attribute (identifier_mavutil) identifier_mavutil (identifier_mavlink) identifier_mavlink )attribute (identifier_MAV_MOUNT_MODE_RC_TARGETING) identifier_MAV_MOUNT_MODE_RC_TARGETING )attribute )assignment )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (identifier_print) identifier_print (argument_list (binary_operator (string_"Unsupported mode %s") string_"Unsupported mode %s" (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_master) identifier_master )attribute (identifier_mav) identifier_mav )attribute (identifier_mount_configure_send) identifier_mount_configure_send )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_target_system) identifier_target_system )attribute (attribute (identifier_self) identifier_self (identifier_target_component) identifier_target_component )attribute (identifier_mode) identifier_mode (integer_1) integer_1 (integer_1) integer_1 (integer_1) integer_1 )argument_list )call )expression_statement )block )function_definition )module
control gimbal mode
(module (function_definition (function_name_match) function_name_match (parameters (identifier_self) identifier_self (identifier_location) identifier_location )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_ssh_alias) identifier_ssh_alias )attribute (attribute (identifier_location) identifier_location (identifier_ssh_alias) identifier_ssh_alias )attribute )comparison_operator (block (return_statement (False) False )return_statement )block (elif_clause (attribute (identifier_self) identifier_self (identifier_have_wildcards) identifier_have_wildcards )attribute (block (return_statement (call (attribute (identifier_fnmatch) identifier_fnmatch (identifier_fnmatch) identifier_fnmatch )attribute (argument_list (attribute (identifier_location) identifier_location (identifier_directory) identifier_directory )attribute (attribute (identifier_self) identifier_self (identifier_directory) identifier_directory )attribute )argument_list )call )return_statement )block )elif_clause (else_clause (block (expression_statement (assignment (identifier_self) identifier_self (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_normpath) identifier_normpath )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_directory) identifier_directory )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_other) identifier_other (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_normpath) identifier_normpath )attribute (argument_list (attribute (identifier_location) identifier_location (identifier_directory) identifier_directory )attribute )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (identifier_self) identifier_self (identifier_other) identifier_other )comparison_operator )return_statement )block )else_clause )if_statement )block )function_definition )module
Check if the given location "matches". :param location: The :class:`Location` object to try to match. :returns: :data:`True` if the two locations are on the same system and the :attr:`directory` can be matched as a filename pattern or a literal match on the normalized pathname.
(module (function_definition (function_name_memory_read_bytes) function_name_memory_read_bytes (parameters (identifier_self) identifier_self (typed_parameter (identifier_start_position) identifier_start_position (type (identifier_int) identifier_int )type )typed_parameter (typed_parameter (identifier_size) identifier_size (type (identifier_int) identifier_int )type )typed_parameter )parameters (type (identifier_bytes) identifier_bytes )type (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__memory) identifier__memory )attribute (identifier_read_bytes) identifier_read_bytes )attribute (argument_list (identifier_start_position) identifier_start_position (identifier_size) identifier_size )argument_list )call )return_statement )block )function_definition )module
Read and return ``size`` bytes from memory starting at ``start_position``.
(module (function_definition (function_name_build_get_revoc_reg_request) function_name_build_get_revoc_reg_request (parameters (typed_parameter (identifier_submitter_did) identifier_submitter_did (type (generic_type (identifier_Optional) identifier_Optional (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_revoc_reg_def_id) identifier_revoc_reg_def_id (type (identifier_str) identifier_str )type )typed_parameter (typed_parameter (identifier_timestamp) identifier_timestamp (type (identifier_int) identifier_int )type )typed_parameter )parameters (type (identifier_str) identifier_str )type (block (expression_statement (assignment (identifier_logger) identifier_logger (call (attribute (identifier_logging) identifier_logging (identifier_getLogger) identifier_getLogger )attribute (argument_list (identifier___name__) identifier___name__ )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (string_"build_get_revoc_reg_request: >>> submitter_did: %r, revoc_reg_def_id: %r, timestamp: %r") string_"build_get_revoc_reg_request: >>> submitter_did: %r, revoc_reg_def_id: %r, timestamp: %r" (identifier_submitter_did) identifier_submitter_did (identifier_revoc_reg_def_id) identifier_revoc_reg_def_id (identifier_timestamp) identifier_timestamp )argument_list )call )expression_statement (if_statement (not_operator (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_build_get_revoc_reg_request) identifier_build_get_revoc_reg_request (string_"cb") string_"cb" )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (string_"build_get_revoc_reg_request: Creating callback") string_"build_get_revoc_reg_request: Creating callback" )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_build_get_revoc_reg_request) identifier_build_get_revoc_reg_request (identifier_cb) identifier_cb )attribute (call (identifier_create_cb) identifier_create_cb (argument_list (call (identifier_CFUNCTYPE) identifier_CFUNCTYPE (argument_list (None) None (identifier_c_int32) identifier_c_int32 (identifier_c_int32) identifier_c_int32 (identifier_c_char_p) identifier_c_char_p )argument_list )call )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_c_submitter_did) identifier_c_submitter_did (conditional_expression (call (identifier_c_char_p) identifier_c_char_p (argument_list (call (attribute (identifier_submitter_did) identifier_submitter_did (identifier_encode) identifier_encode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )argument_list )call (comparison_operator (identifier_submitter_did) identifier_submitter_did (None) None )comparison_operator (None) None )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_c_revoc_reg_def_id) identifier_c_revoc_reg_def_id (call (identifier_c_char_p) identifier_c_char_p (argument_list (call (attribute (identifier_revoc_reg_def_id) identifier_revoc_reg_def_id (identifier_encode) identifier_encode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_c_timestamp) identifier_c_timestamp (call (identifier_c_int64) identifier_c_int64 (argument_list (identifier_timestamp) identifier_timestamp )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_request_json) identifier_request_json (await (call (identifier_do_call) identifier_do_call (argument_list (string_'indy_build_get_revoc_reg_request') string_'indy_build_get_revoc_reg_request' (identifier_c_submitter_did) identifier_c_submitter_did (identifier_c_revoc_reg_def_id) identifier_c_revoc_reg_def_id (identifier_c_timestamp) identifier_c_timestamp (attribute (identifier_build_get_revoc_reg_request) identifier_build_get_revoc_reg_request (identifier_cb) identifier_cb )attribute )argument_list )call )await )assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (call (attribute (identifier_request_json) identifier_request_json (identifier_decode) identifier_decode )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (string_"build_get_revoc_reg_request: <<< res: %r") string_"build_get_revoc_reg_request: <<< res: %r" (identifier_res) identifier_res )argument_list )call )expression_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
Builds a GET_REVOC_REG request. Request to get the accumulated state of the Revocation Registry by ID. The state is defined by the given timestamp. :param submitter_did: (Optional) DID of the read request sender (if not provided then default Libindy DID will be used). :param revoc_reg_def_id: ID of the corresponding Revocation Registry Definition in ledger. :param timestamp: Requested time represented as a total number of seconds from Unix Epoch :return: Request result as json.
(module (function_definition (function_name_assign_operation_ids) function_name_assign_operation_ids (parameters (identifier_spec) identifier_spec (identifier_operids) identifier_operids )parameters (block (expression_statement (assignment (identifier_empty_dict) identifier_empty_dict (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_path_name) identifier_path_name (identifier_path_data) identifier_path_data )pattern_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (subscript (identifier_spec) identifier_spec (string_'paths') string_'paths' )subscript )argument_list )call (block (for_statement (pattern_list (identifier_method) identifier_method (identifier_method_data) identifier_method_data )pattern_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (identifier_path_data) identifier_path_data )argument_list )call (block (expression_statement (assignment (identifier_oper_id) identifier_oper_id (call (attribute (call (attribute (identifier_operids) identifier_operids (identifier_get) identifier_get )attribute (argument_list (identifier_path_name) identifier_path_name (identifier_empty_dict) identifier_empty_dict )argument_list )call (identifier_get) identifier_get )attribute (argument_list (identifier_method) identifier_method )argument_list )call )assignment )expression_statement (if_statement (identifier_oper_id) identifier_oper_id (block (expression_statement (assignment (subscript (identifier_method_data) identifier_method_data (string_'operationId') string_'operationId' )subscript (identifier_oper_id) identifier_oper_id )assignment )expression_statement )block )if_statement )block )for_statement )block )for_statement )block )function_definition )module
used to assign caller provided operationId values into a spec
(module (function_definition (function_name_kernel) function_name_kernel (parameters )parameters (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'================================') string_'================================' )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (string_' WARNING: upgrading the kernel') string_' WARNING: upgrading the kernel' )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (string_'================================') string_'================================' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_time) identifier_time (identifier_sleep) identifier_sleep )attribute (argument_list (integer_5) integer_5 )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (string_'-[kernel]----------') string_'-[kernel]----------' )argument_list )call )expression_statement (expression_statement (call (identifier_cmd) identifier_cmd (argument_list (string_'rpi-update') string_'rpi-update' (True) True )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (string_' >> You MUST reboot to load the new kernel <<') string_' >> You MUST reboot to load the new kernel <<' )argument_list )call )expression_statement )block )function_definition )module
Handle linux kernel update
(module (function_definition (function_name_disassociate_route_table) function_name_disassociate_route_table (parameters (identifier_association_id) identifier_association_id (default_parameter (identifier_region) identifier_region (None) None )default_parameter (default_parameter (identifier_key) identifier_key (None) None )default_parameter (default_parameter (identifier_keyid) identifier_keyid (None) None )default_parameter (default_parameter (identifier_profile) identifier_profile (None) None )default_parameter )parameters (block (try_statement (block (expression_statement (assignment (identifier_conn) identifier_conn (call (identifier__get_conn) identifier__get_conn (argument_list (keyword_argument (identifier_region) identifier_region (identifier_region) identifier_region )keyword_argument (keyword_argument (identifier_key) identifier_key (identifier_key) identifier_key )keyword_argument (keyword_argument (identifier_keyid) identifier_keyid (identifier_keyid) identifier_keyid )keyword_argument (keyword_argument (identifier_profile) identifier_profile (identifier_profile) identifier_profile )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_conn) identifier_conn (identifier_disassociate_route_table) identifier_disassociate_route_table )attribute (argument_list (identifier_association_id) identifier_association_id )argument_list )call (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_'Route table with association id %s has been disassociated.') string_'Route table with association id %s has been disassociated.' (identifier_association_id) identifier_association_id )argument_list )call )expression_statement (return_statement (dictionary (pair (string_'disassociated') string_'disassociated' (True) True )pair )dictionary )return_statement )block (else_clause (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_warning) identifier_warning )attribute (argument_list (string_'Route table with association id %s has not been disassociated.') string_'Route table with association id %s has not been disassociated.' (identifier_association_id) identifier_association_id )argument_list )call )expression_statement (return_statement (dictionary (pair (string_'disassociated') string_'disassociated' (False) False )pair )dictionary )return_statement )block )else_clause )if_statement )block (except_clause (as_pattern (identifier_BotoServerError) identifier_BotoServerError (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (return_statement (dictionary (pair (string_'disassociated') string_'disassociated' (False) False )pair (pair (string_'error') string_'error' (call (subscript (identifier___utils__) identifier___utils__ (string_'boto.get_error') string_'boto.get_error' )subscript (argument_list (identifier_e) identifier_e )argument_list )call )pair )dictionary )return_statement )block )except_clause )try_statement )block )function_definition )module
Dissassociates a route table. association_id The Route Table Association ID to disassociate CLI Example: .. code-block:: bash salt myminion boto_vpc.disassociate_route_table 'rtbassoc-d8ccddba'
(module (function_definition (function_name_wrapper) function_name_wrapper (parameters (identifier_cls) identifier_cls (identifier_func) identifier_func (default_parameter (identifier_height) identifier_height (None) None )default_parameter (default_parameter (identifier_catch_interrupt) identifier_catch_interrupt (False) False )default_parameter (default_parameter (identifier_arguments) identifier_arguments (None) None )default_parameter (default_parameter (identifier_unicode_aware) identifier_unicode_aware (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_screen) identifier_screen (call (attribute (identifier_Screen) identifier_Screen (identifier_open) identifier_open )attribute (argument_list (identifier_height) identifier_height (keyword_argument (identifier_catch_interrupt) identifier_catch_interrupt (identifier_catch_interrupt) identifier_catch_interrupt )keyword_argument (keyword_argument (identifier_unicode_aware) identifier_unicode_aware (identifier_unicode_aware) identifier_unicode_aware )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_restore) identifier_restore (True) True )assignment )expression_statement (try_statement (block (try_statement (block (if_statement (identifier_arguments) identifier_arguments (block (return_statement (call (identifier_func) identifier_func (argument_list (identifier_screen) identifier_screen (list_splat (identifier_arguments) identifier_arguments )list_splat )argument_list )call )return_statement )block (else_clause (block (return_statement (call (identifier_func) identifier_func (argument_list (identifier_screen) identifier_screen )argument_list )call )return_statement )block )else_clause )if_statement )block (except_clause (identifier_ResizeScreenError) identifier_ResizeScreenError (block (expression_statement (assignment (identifier_restore) identifier_restore (False) False )assignment )expression_statement (raise_statement )raise_statement )block )except_clause )try_statement )block (finally_clause (block (expression_statement (call (attribute (identifier_screen) identifier_screen (identifier_close) identifier_close )attribute (argument_list (identifier_restore) identifier_restore )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Construct a new Screen for any platform. This will initialize the Screen, call the specified function and then tidy up the system as required when the function exits. :param func: The function to call once the Screen has been created. :param height: The buffer height for this Screen (only for test purposes). :param catch_interrupt: Whether to catch and prevent keyboard interrupts. Defaults to False to maintain backwards compatibility. :param arguments: Optional arguments list to pass to func (after the Screen object). :param unicode_aware: Whether the application can use unicode or not. If None, try to detect from the environment if UTF-8 is enabled.
(module (function_definition (function_name_map_) function_name_map_ (parameters (identifier_input_layer) identifier_input_layer (identifier_fn) identifier_fn )parameters (block (if_statement (not_operator (call (attribute (identifier_input_layer) identifier_input_layer (identifier_is_sequence) identifier_is_sequence )attribute (argument_list )argument_list )call )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Can only map a sequence.') string_'Can only map a sequence.' )argument_list )call )raise_statement )block )if_statement (return_statement (list_comprehension (call (identifier_fn) identifier_fn (argument_list (identifier_x) identifier_x )argument_list )call (for_in_clause (identifier_x) identifier_x (identifier_input_layer) identifier_input_layer )for_in_clause )list_comprehension )return_statement )block )function_definition )module
Maps the given function across this sequence. To map an entire template across the sequence, use the `as_fn` method on the template. Args: input_layer: The input tensor. fn: A function of 1 argument that is applied to each item in the sequence. Returns: A new sequence Pretty Tensor. Raises: ValueError: If the input_layer does not hold a sequence.
(module (function_definition (function_name__get_auth_challenge) function_name__get_auth_challenge (parameters (identifier_self) identifier_self (identifier_exc) identifier_exc )parameters (block (expression_statement (assignment (identifier_response) identifier_response (call (identifier_HttpResponse) identifier_HttpResponse (argument_list (keyword_argument (identifier_content) identifier_content (attribute (identifier_exc) identifier_exc (identifier_content) identifier_content )attribute )keyword_argument (keyword_argument (identifier_status) identifier_status (call (attribute (identifier_exc) identifier_exc (identifier_get_code_num) identifier_get_code_num )attribute (argument_list )argument_list )call )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_response) identifier_response (string_'WWW-Authenticate') string_'WWW-Authenticate' )subscript (binary_operator (string_'Basic realm="%s"') string_'Basic realm="%s"' (identifier_REALM) identifier_REALM )binary_operator )assignment )expression_statement (return_statement (identifier_response) identifier_response )return_statement )block )function_definition )module
Returns HttpResponse for the client.
(module (function_definition (function_name_get_saver) function_name_get_saver (parameters (identifier_scope) identifier_scope (default_parameter (identifier_collections) identifier_collections (tuple (attribute (attribute (identifier_tf) identifier_tf (identifier_GraphKeys) identifier_GraphKeys )attribute (identifier_GLOBAL_VARIABLES) identifier_GLOBAL_VARIABLES )attribute )tuple )default_parameter (default_parameter (identifier_context) identifier_context (None) None )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_variable_map) identifier_variable_map (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_collection) identifier_collection (identifier_collections) identifier_collections (block (expression_statement (call (attribute (identifier_variable_map) identifier_variable_map (identifier_update) identifier_update )attribute (argument_list (call (identifier_get_normalized_variable_map) identifier_get_normalized_variable_map (argument_list (identifier_scope) identifier_scope (identifier_collection) identifier_collection (identifier_context) identifier_context )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (call (attribute (attribute (identifier_tf) identifier_tf (identifier_train) identifier_train )attribute (identifier_Saver) identifier_Saver )attribute (argument_list (keyword_argument (identifier_var_list) identifier_var_list (identifier_variable_map) identifier_variable_map )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Builds a `tf.train.Saver` for the scope or module, with normalized names. The names of the variables are normalized to remove the scope prefix. This allows the same variables to be restored into another similar scope or module using a complementary `tf.train.Saver` object. Args: scope: Scope or module. Variables within will be saved or restored. collections: Sequence of collections of variables to restrict `tf.train.Saver` to. By default this is `tf.GraphKeys.GLOBAL_VARIABLES` which includes moving averages variables as well as trainable variables. context: Scope or module, identical to or parent of `scope`. If given, this will be used as the stripped prefix. **kwargs: Extra keyword arguments to pass to tf.train.Saver. Returns: A `tf.train.Saver` object for Variables in the scope or module.
(module (function_definition (function_name_disenriched) function_name_disenriched (parameters (identifier_self) identifier_self (default_parameter (identifier_thresh) identifier_thresh (float_0.05) float_0.05 )default_parameter (default_parameter (identifier_idx) identifier_idx (True) True )default_parameter )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_downregulated) identifier_downregulated )attribute (argument_list (keyword_argument (identifier_thresh) identifier_thresh (identifier_thresh) identifier_thresh )keyword_argument (keyword_argument (identifier_idx) identifier_idx (identifier_idx) identifier_idx )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Disenriched features. {threshdoc}
(module (function_definition (function_name_get_installed_packages) function_name_get_installed_packages (parameters (identifier_site_packages) identifier_site_packages (identifier_site_packages_64) identifier_site_packages_64 )parameters (block (import_statement (dotted_name (identifier_pkg_resources) identifier_pkg_resources )dotted_name )import_statement (expression_statement (assignment (identifier_package_to_keep) identifier_package_to_keep (list )list )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_site_packages) identifier_site_packages )argument_list )call (block (expression_statement (augmented_assignment (identifier_package_to_keep) identifier_package_to_keep (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_site_packages) identifier_site_packages )argument_list )call )augmented_assignment )expression_statement )block )if_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_site_packages_64) identifier_site_packages_64 )argument_list )call (block (expression_statement (augmented_assignment (identifier_package_to_keep) identifier_package_to_keep (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_site_packages_64) identifier_site_packages_64 )argument_list )call )augmented_assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_package_to_keep) identifier_package_to_keep (list_comprehension (call (attribute (identifier_x) identifier_x (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (for_in_clause (identifier_x) identifier_x (identifier_package_to_keep) identifier_package_to_keep )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_installed_packages) identifier_installed_packages (dictionary_comprehension (pair (call (attribute (attribute (identifier_package) identifier_package (identifier_project_name) identifier_project_name )attribute (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (attribute (identifier_package) identifier_package (identifier_version) identifier_version )attribute )pair (for_in_clause (identifier_package) identifier_package (call (attribute (identifier_pkg_resources) identifier_pkg_resources (identifier_WorkingSet) identifier_WorkingSet )attribute (argument_list )argument_list )call )for_in_clause (if_clause (boolean_operator (comparison_operator (call (attribute (attribute (identifier_package) identifier_package (identifier_project_name) identifier_project_name )attribute (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (identifier_package_to_keep) identifier_package_to_keep )comparison_operator (comparison_operator (call (attribute (attribute (identifier_package) identifier_package (identifier_location) identifier_location )attribute (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (list (call (attribute (identifier_site_packages) identifier_site_packages (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (call (attribute (identifier_site_packages_64) identifier_site_packages_64 (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )list )comparison_operator )boolean_operator )if_clause )dictionary_comprehension )assignment )expression_statement (return_statement (identifier_installed_packages) identifier_installed_packages )return_statement )block )function_definition )module
Returns a dict of installed packages that Zappa cares about.
(module (function_definition (function_name_pretty_objname) function_name_pretty_objname (parameters (identifier_self) identifier_self (default_parameter (identifier_obj) identifier_obj (None) None )default_parameter (default_parameter (identifier_maxlen) identifier_maxlen (integer_50) integer_50 )default_parameter (default_parameter (identifier_color) identifier_color (string_"boldcyan") string_"boldcyan" )default_parameter )parameters (block (expression_statement (assignment (identifier_parent_name) identifier_parent_name (call (identifier_lambda_sub) identifier_lambda_sub (argument_list (string_"") string_"" (boolean_operator (call (identifier_get_parent_name) identifier_get_parent_name (argument_list (identifier_obj) identifier_obj )argument_list )call (string_"") string_"" )boolean_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_objname) identifier_objname (call (identifier_get_obj_name) identifier_get_obj_name (argument_list (identifier_obj) identifier_obj )argument_list )call )assignment )expression_statement (if_statement (identifier_color) identifier_color (block (expression_statement (augmented_assignment (identifier_objname) identifier_objname (call (identifier_colorize) identifier_colorize (argument_list (call (attribute (string_"<{}>") string_"<{}>" (identifier_format) identifier_format )attribute (argument_list (identifier_parent_name) identifier_parent_name )argument_list )call (identifier_color) identifier_color (keyword_argument (identifier_close) identifier_close (False) False )keyword_argument )argument_list )call )augmented_assignment )expression_statement )block (else_clause (block (expression_statement (augmented_assignment (identifier_objname) identifier_objname (call (attribute (string_"<{}>") string_"<{}>" (identifier_format) identifier_format )attribute (argument_list (identifier_parent_name) identifier_parent_name )argument_list )call )augmented_assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_objname) identifier_objname (conditional_expression (identifier_objname) identifier_objname (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_objname) identifier_objname )argument_list )call (identifier_maxlen) identifier_maxlen )comparison_operator (line_continuation_\) line_continuation_\ (binary_operator (subscript (identifier_objname) identifier_objname (slice (colon) colon (parenthesized_expression (binary_operator (identifier_maxlen) identifier_maxlen (integer_1) integer_1 )binary_operator )parenthesized_expression )slice )subscript (string_"…>") string_"…>" )binary_operator )conditional_expression )assignment )expression_statement (if_statement (identifier_color) identifier_color (block (expression_statement (augmented_assignment (identifier_objname) identifier_objname (attribute (identifier_colors) identifier_colors (identifier_RESET) identifier_RESET )attribute )augmented_assignment )expression_statement )block )if_statement (return_statement (identifier_objname) identifier_objname )return_statement )block )function_definition )module
Pretty prints object name @obj: the object whose name you want to pretty print @maxlen: #int maximum length of an object name to print @color: your choice of :mod:colors or |None| -> #str pretty object name .. from vital.debug import Look print(Look.pretty_objname(dict)) # -> 'dict\x1b[1;36m<builtins>\x1b[1;m' ..
(module (function_definition (function_name_get_path_matching) function_name_get_path_matching (parameters (identifier_name) identifier_name )parameters (block (expression_statement (assignment (identifier_p) identifier_p (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_expanduser) identifier_expanduser )attribute (argument_list (string_"~") string_"~" )argument_list )call (identifier_name) identifier_name )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_p) identifier_p )argument_list )call )not_operator (block (expression_statement (assignment (identifier_p) identifier_p (None) None )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_drive) identifier_drive (identifier_folders) identifier_folders )pattern_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_splitdrive) identifier_splitdrive )attribute (argument_list (call (attribute (identifier_os) identifier_os (identifier_getcwd) identifier_getcwd )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_folders) identifier_folders (call (attribute (identifier_folders) identifier_folders (identifier_split) identifier_split )attribute (argument_list (attribute (identifier_os) identifier_os (identifier_sep) identifier_sep )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_folders) identifier_folders (identifier_insert) identifier_insert )attribute (argument_list (integer_0) integer_0 (attribute (identifier_os) identifier_os (identifier_sep) identifier_sep )attribute )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_name) identifier_name (identifier_folders) identifier_folders )comparison_operator (block (expression_statement (assignment (identifier_p) identifier_p (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_drive) identifier_drive (list_splat (subscript (identifier_folders) identifier_folders (slice (colon) colon (binary_operator (call (attribute (identifier_folders) identifier_folders (identifier_index) identifier_index )attribute (argument_list (identifier_name) identifier_name )argument_list )call (integer_1) integer_1 )binary_operator )slice )subscript )list_splat )argument_list )call )assignment )expression_statement )block )if_statement )block )if_statement (return_statement (identifier_p) identifier_p )return_statement )block )function_definition )module
Get path matching a name. Parameters ---------- name : string Name to search for. Returns ------- string Full filepath.
(module (function_definition (function_name__get_domain) function_name__get_domain (parameters (identifier_conn) identifier_conn (list_splat_pattern (identifier_vms) identifier_vms )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (call (identifier_list) identifier_list (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_lookup_vms) identifier_lookup_vms (call (identifier_list) identifier_list (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_all_vms) identifier_all_vms (list )list )assignment )expression_statement (if_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'active') string_'active' (True) True )argument_list )call (block (for_statement (identifier_id_) identifier_id_ (call (attribute (identifier_conn) identifier_conn (identifier_listDomainsID) identifier_listDomainsID )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_all_vms) identifier_all_vms (identifier_append) identifier_append )attribute (argument_list (call (attribute (call (attribute (identifier_conn) identifier_conn (identifier_lookupByID) identifier_lookupByID )attribute (argument_list (identifier_id_) identifier_id_ )argument_list )call (identifier_name) identifier_name )attribute (argument_list )argument_list )call )argument_list )call )expression_statement )block )for_statement )block )if_statement (if_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'inactive') string_'inactive' (True) True )argument_list )call (block (for_statement (identifier_id_) identifier_id_ (call (attribute (identifier_conn) identifier_conn (identifier_listDefinedDomains) identifier_listDefinedDomains )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_all_vms) identifier_all_vms (identifier_append) identifier_append )attribute (argument_list (identifier_id_) identifier_id_ )argument_list )call )expression_statement )block )for_statement )block )if_statement (if_statement (not_operator (identifier_all_vms) identifier_all_vms )not_operator (block (raise_statement (call (identifier_CommandExecutionError) identifier_CommandExecutionError (argument_list (string_'No virtual machines found.') string_'No virtual machines found.' )argument_list )call )raise_statement )block )if_statement (if_statement (identifier_vms) identifier_vms (block (for_statement (identifier_name) identifier_name (identifier_vms) identifier_vms (block (if_statement (comparison_operator (identifier_name) identifier_name (identifier_all_vms) identifier_all_vms )comparison_operator (block (raise_statement (call (identifier_CommandExecutionError) identifier_CommandExecutionError (argument_list (call (attribute (string_'The VM "{name}" is not present') string_'The VM "{name}" is not present' (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument )argument_list )call )argument_list )call )raise_statement )block (else_clause (block (expression_statement (call (attribute (identifier_lookup_vms) identifier_lookup_vms (identifier_append) identifier_append )attribute (argument_list (identifier_name) identifier_name )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block (else_clause (block (expression_statement (assignment (identifier_lookup_vms) identifier_lookup_vms (call (identifier_list) identifier_list (argument_list (identifier_all_vms) identifier_all_vms )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (for_statement (identifier_name) identifier_name (identifier_lookup_vms) identifier_lookup_vms (block (expression_statement (call (attribute (identifier_ret) identifier_ret (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_conn) identifier_conn (identifier_lookupByName) identifier_lookupByName )attribute (argument_list (identifier_name) identifier_name )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (boolean_operator (boolean_operator (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_ret) identifier_ret )argument_list )call (integer_1) integer_1 )comparison_operator (not_operator (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'iterable') string_'iterable' )argument_list )call )not_operator )boolean_operator (subscript (identifier_ret) identifier_ret (integer_0) integer_0 )subscript )boolean_operator (identifier_ret) identifier_ret )boolean_operator )return_statement )block )function_definition )module
Return a domain object for the named VM or return domain object for all VMs. :params conn: libvirt connection object :param vms: list of domain names to look for :param iterable: True to return an array in all cases
(module (function_definition (function_name_create_model_package_from_algorithm) function_name_create_model_package_from_algorithm (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_description) identifier_description (identifier_algorithm_arn) identifier_algorithm_arn (identifier_model_data) identifier_model_data )parameters (block (expression_statement (assignment (identifier_request) identifier_request (dictionary (pair (string_'ModelPackageName') string_'ModelPackageName' (identifier_name) identifier_name )pair (pair (string_'ModelPackageDescription') string_'ModelPackageDescription' (identifier_description) identifier_description )pair (pair (string_'SourceAlgorithmSpecification') string_'SourceAlgorithmSpecification' (dictionary (pair (string_'SourceAlgorithms') string_'SourceAlgorithms' (list (dictionary (pair (string_'AlgorithmName') string_'AlgorithmName' (identifier_algorithm_arn) identifier_algorithm_arn )pair (pair (string_'ModelDataUrl') string_'ModelDataUrl' (identifier_model_data) identifier_model_data )pair )dictionary )list )pair )dictionary )pair )dictionary )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_LOGGER) identifier_LOGGER (identifier_info) identifier_info )attribute (argument_list (call (attribute (string_'Creating model package with name: {}') string_'Creating model package with name: {}' (identifier_format) identifier_format )attribute (argument_list (identifier_name) identifier_name )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_sagemaker_client) identifier_sagemaker_client )attribute (identifier_create_model_package) identifier_create_model_package )attribute (argument_list (dictionary_splat (identifier_request) identifier_request )dictionary_splat )argument_list )call )expression_statement )block (except_clause (as_pattern (identifier_ClientError) identifier_ClientError (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (assignment (identifier_error_code) identifier_error_code (subscript (subscript (attribute (identifier_e) identifier_e (identifier_response) identifier_response )attribute (string_'Error') string_'Error' )subscript (string_'Code') string_'Code' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_message) identifier_message (subscript (subscript (attribute (identifier_e) identifier_e (identifier_response) identifier_response )attribute (string_'Error') string_'Error' )subscript (string_'Message') string_'Message' )subscript )assignment )expression_statement (if_statement (parenthesized_expression (boolean_operator (comparison_operator (identifier_error_code) identifier_error_code (string_'ValidationException') string_'ValidationException' )comparison_operator (comparison_operator (string_'ModelPackage already exists') string_'ModelPackage already exists' (identifier_message) identifier_message )comparison_operator )boolean_operator )parenthesized_expression (block (expression_statement (call (attribute (identifier_LOGGER) identifier_LOGGER (identifier_warning) identifier_warning )attribute (argument_list (call (attribute (string_'Using already existing model package: {}') string_'Using already existing model package: {}' (identifier_format) identifier_format )attribute (argument_list (identifier_name) identifier_name )argument_list )call )argument_list )call )expression_statement )block (else_clause (block (raise_statement )raise_statement )block )else_clause )if_statement )block )except_clause )try_statement )block )function_definition )module
Create a SageMaker Model Package from the results of training with an Algorithm Package Args: name (str): ModelPackage name description (str): Model Package description algorithm_arn (str): arn or name of the algorithm used for training. model_data (str): s3 URI to the model artifacts produced by training
(module (function_definition (function_name_get_host) function_name_get_host (parameters (identifier_self) identifier_self (identifier_hostname) identifier_hostname )parameters (block (if_statement (comparison_operator (identifier_hostname) identifier_hostname (call (attribute (identifier_self) identifier_self (identifier_get_hosts) identifier_get_hosts )attribute (argument_list )argument_list )call )comparison_operator (block (return_statement (call (attribute (call (attribute (identifier_self) identifier_self (identifier_load_ssh_conf) identifier_load_ssh_conf )attribute (argument_list )argument_list )call (identifier_lookup) identifier_lookup )attribute (argument_list (identifier_hostname) identifier_hostname )argument_list )call )return_statement )block )if_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_warn) identifier_warn )attribute (argument_list (call (attribute (string_'Tried to find host with name {0}, but host not found') string_'Tried to find host with name {0}, but host not found' (identifier_format) identifier_format )attribute (argument_list (identifier_hostname) identifier_hostname )argument_list )call )argument_list )call )expression_statement (return_statement (None) None )return_statement )block )function_definition )module
Returns a Host dict with config options, or None if none exists
(module (function_definition (function_name_get_contract_by_hash) function_name_get_contract_by_hash (parameters (identifier_self) identifier_self (identifier_contract_hash) identifier_contract_hash )parameters (block (expression_statement (assignment (identifier_contract_address) identifier_contract_address (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_db) identifier_db )attribute (identifier_reader) identifier_reader )attribute (identifier__get_address_by_hash) identifier__get_address_by_hash )attribute (argument_list (identifier_contract_hash) identifier_contract_hash )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_contract_address) identifier_contract_address (None) None )comparison_operator (block (return_statement (identifier_contract_address) identifier_contract_address )return_statement )block (else_clause (block (raise_statement (identifier_AddressNotFoundError) identifier_AddressNotFoundError )raise_statement )block )else_clause )if_statement )block )function_definition )module
get mapped contract_address by its hash, if not found try indexing.
(module (function_definition (function_name__write_field) function_name__write_field (parameters (identifier_self) identifier_self (identifier_value) identifier_value )parameters (block (expression_statement (assignment (identifier_class_name) identifier_class_name (call (identifier_str) identifier_str (argument_list (attribute (identifier_value) identifier_value (identifier___class__) identifier___class__ )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_class_name) identifier_class_name (attribute (identifier_self) identifier_self (identifier_handlers) identifier_handlers )attribute )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_'No handler has been registered for class: {0!s}') string_'No handler has been registered for class: {0!s}' (identifier_format) identifier_format )attribute (argument_list (identifier_class_name) identifier_class_name )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_handler) identifier_handler (subscript (attribute (identifier_self) identifier_self (identifier_handlers) identifier_handlers )attribute (identifier_class_name) identifier_class_name )subscript )assignment )expression_statement (expression_statement (call (identifier_handler) identifier_handler (argument_list (identifier_value) identifier_value (attribute (identifier_self) identifier_self (identifier__file) identifier__file )attribute )argument_list )call )expression_statement )block )function_definition )module
Write a single field to the destination file. :param T value: The value of the field.
(module (function_definition (function_name__do_merge) function_name__do_merge (parameters (identifier_orig_files) identifier_orig_files (identifier_out_file) identifier_out_file (identifier_config) identifier_config (identifier_region) identifier_region )parameters (block (if_statement (not_operator (call (attribute (identifier_utils) identifier_utils (identifier_file_exists) identifier_file_exists )attribute (argument_list (identifier_out_file) identifier_out_file )argument_list )call )not_operator (block (with_statement (with_clause (with_item (as_pattern (call (identifier_file_transaction) identifier_file_transaction (argument_list (identifier_config) identifier_config (identifier_out_file) identifier_out_file )argument_list )call (as_pattern_target (identifier_tx_out_file) identifier_tx_out_file )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (identifier__check_samples_nodups) identifier__check_samples_nodups (argument_list (identifier_orig_files) identifier_orig_files )argument_list )call )expression_statement (expression_statement (assignment (identifier_prep_files) identifier_prep_files (call (identifier_run_multicore) identifier_run_multicore (argument_list (identifier_p_bgzip_and_index) identifier_p_bgzip_and_index (list_comprehension (list (identifier_x) identifier_x (identifier_config) identifier_config )list (for_in_clause (identifier_x) identifier_x (identifier_orig_files) identifier_orig_files )for_in_clause )list_comprehension (identifier_config) identifier_config )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_input_vcf_file) identifier_input_vcf_file (binary_operator (string_"%s-files.txt") string_"%s-files.txt" (subscript (call (attribute (identifier_utils) identifier_utils (identifier_splitext_plus) identifier_splitext_plus )attribute (argument_list (identifier_out_file) identifier_out_file )argument_list )call (integer_0) integer_0 )subscript )binary_operator )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_input_vcf_file) identifier_input_vcf_file (string_"w") string_"w" )argument_list )call (as_pattern_target (identifier_out_handle) identifier_out_handle )as_pattern_target )as_pattern )with_item )with_clause (block (for_statement (identifier_fname) identifier_fname (identifier_prep_files) identifier_prep_files (block (expression_statement (call (attribute (identifier_out_handle) identifier_out_handle (identifier_write) identifier_write )attribute (argument_list (binary_operator (identifier_fname) identifier_fname (string_"\n") string_"\n" )binary_operator )argument_list )call )expression_statement )block )for_statement )block )with_statement (expression_statement (assignment (identifier_bcftools) identifier_bcftools (call (attribute (identifier_config_utils) identifier_config_utils (identifier_get_program) identifier_get_program )attribute (argument_list (string_"bcftools") string_"bcftools" (identifier_config) identifier_config )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_output_type) identifier_output_type (conditional_expression (string_"z") string_"z" (call (attribute (identifier_out_file) identifier_out_file (identifier_endswith) identifier_endswith )attribute (argument_list (string_".gz") string_".gz" )argument_list )call (string_"v") string_"v" )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_region_str) identifier_region_str (conditional_expression (call (attribute (string_"-r {}") string_"-r {}" (identifier_format) identifier_format )attribute (argument_list (identifier_region) identifier_region )argument_list )call (identifier_region) identifier_region (string_"") string_"" )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_cmd) identifier_cmd (string_"{bcftools} merge -O {output_type} {region_str} `cat {input_vcf_file}` > {tx_out_file}") string_"{bcftools} merge -O {output_type} {region_str} `cat {input_vcf_file}` > {tx_out_file}" )assignment )expression_statement (expression_statement (call (attribute (identifier_do) identifier_do (identifier_run) identifier_run )attribute (argument_list (call (attribute (identifier_cmd) identifier_cmd (identifier_format) identifier_format )attribute (argument_list (dictionary_splat (call (identifier_locals) identifier_locals (argument_list )argument_list )call )dictionary_splat )argument_list )call (string_"Merge variants") string_"Merge variants" )argument_list )call )expression_statement )block )with_statement )block )if_statement (if_statement (call (attribute (identifier_out_file) identifier_out_file (identifier_endswith) identifier_endswith )attribute (argument_list (string_".gz") string_".gz" )argument_list )call (block (expression_statement (call (identifier_bgzip_and_index) identifier_bgzip_and_index (argument_list (identifier_out_file) identifier_out_file (identifier_config) identifier_config )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_out_file) identifier_out_file )return_statement )block )function_definition )module
Do the actual work of merging with bcftools merge.
(module (function_definition (function_name__run_module_code) function_name__run_module_code (parameters (identifier_code) identifier_code (default_parameter (identifier_init_globals) identifier_init_globals (None) None )default_parameter (default_parameter (identifier_mod_name) identifier_mod_name (None) None )default_parameter (default_parameter (identifier_mod_fname) identifier_mod_fname (None) None )default_parameter (default_parameter (identifier_mod_loader) identifier_mod_loader (None) None )default_parameter (default_parameter (identifier_pkg_name) identifier_pkg_name (None) None )default_parameter )parameters (block (with_statement (with_clause (with_item (call (identifier__ModifiedArgv0) identifier__ModifiedArgv0 (argument_list (identifier_mod_fname) identifier_mod_fname )argument_list )call )with_item )with_clause (block (with_statement (with_clause (with_item (as_pattern (call (identifier__TempModule) identifier__TempModule (argument_list (identifier_mod_name) identifier_mod_name )argument_list )call (as_pattern_target (identifier_temp_module) identifier_temp_module )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_mod_globals) identifier_mod_globals (attribute (attribute (identifier_temp_module) identifier_temp_module (identifier_module) identifier_module )attribute (identifier___dict__) identifier___dict__ )attribute )assignment )expression_statement (expression_statement (call (identifier__run_code) identifier__run_code (argument_list (identifier_code) identifier_code (identifier_mod_globals) identifier_mod_globals (identifier_init_globals) identifier_init_globals (identifier_mod_name) identifier_mod_name (identifier_mod_fname) identifier_mod_fname (identifier_mod_loader) identifier_mod_loader (identifier_pkg_name) identifier_pkg_name )argument_list )call )expression_statement )block )with_statement )block )with_statement (return_statement (call (attribute (identifier_mod_globals) identifier_mod_globals (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
Helper to run code in new namespace with sys modified
(module (function_definition (function_name__run_node_distribution_command) function_name__run_node_distribution_command (parameters (identifier_self) identifier_self (identifier_command) identifier_command (identifier_workunit) identifier_workunit )parameters (block (expression_statement (assignment (identifier_process) identifier_process (call (attribute (identifier_command) identifier_command (identifier_run) identifier_run )attribute (argument_list (keyword_argument (identifier_stdout) identifier_stdout (call (attribute (identifier_workunit) identifier_workunit (identifier_output) identifier_output )attribute (argument_list (string_'stdout') string_'stdout' )argument_list )call )keyword_argument (keyword_argument (identifier_stderr) identifier_stderr (call (attribute (identifier_workunit) identifier_workunit (identifier_output) identifier_output )attribute (argument_list (string_'stderr') string_'stderr' )argument_list )call )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_process) identifier_process (identifier_wait) identifier_wait )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
Runs a NodeDistribution.Command for _execute_command and returns its return code. Passes any additional kwargs to command.run (which passes them, modified, to subprocess.Popen). Override this in a Task subclass to do something more complicated than just calling command.run() and returning the result of wait(). :param NodeDistribution.Command command: The command to run. :param WorkUnit workunit: The WorkUnit the command is running under. :returns: returncode :rtype: int
(module (function_definition (function_name_deleteICM) function_name_deleteICM (parameters (typed_parameter (identifier_uuid) identifier_uuid (type (identifier_str) identifier_str )type )typed_parameter )parameters (block (expression_statement (assignment (identifier__metadata) identifier__metadata (call (attribute (call (attribute (attribute (identifier_ICMMetadata) identifier_ICMMetadata (identifier_query) identifier_query )attribute (identifier_filter_by) identifier_filter_by )attribute (argument_list (keyword_argument (identifier_id) identifier_id (identifier_uuid) identifier_uuid )keyword_argument )argument_list )call (identifier_first) identifier_first )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_db) identifier_db (identifier_session) identifier_session )attribute (identifier_delete) identifier_delete )attribute (argument_list (identifier__metadata) identifier__metadata )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_db) identifier_db (identifier_session) identifier_session )attribute (identifier_commit) identifier_commit )attribute (argument_list )argument_list )call )expression_statement (return_statement (tuple (string_"") string_"" (integer_204) integer_204 )tuple )return_statement )block )function_definition )module
Deletes an ICM
(module (function_definition (function_name_marketPrice) function_name_marketPrice (parameters (identifier_self) identifier_self )parameters (type (identifier_float) identifier_float )type (block (expression_statement (assignment (identifier_price) identifier_price (conditional_expression (attribute (identifier_self) identifier_self (identifier_last) identifier_last )attribute (parenthesized_expression (boolean_operator (call (attribute (identifier_self) identifier_self (identifier_hasBidAsk) identifier_hasBidAsk )attribute (argument_list )argument_list )call (comparison_operator (attribute (identifier_self) identifier_self (identifier_bid) identifier_bid )attribute (attribute (identifier_self) identifier_self (identifier_last) identifier_last )attribute (attribute (identifier_self) identifier_self (identifier_ask) identifier_ask )attribute )comparison_operator )boolean_operator )parenthesized_expression (line_continuation_\) line_continuation_\ (call (attribute (identifier_self) identifier_self (identifier_midpoint) identifier_midpoint )attribute (argument_list )argument_list )call )conditional_expression )assignment )expression_statement (if_statement (call (identifier_isNan) identifier_isNan (argument_list (identifier_price) identifier_price )argument_list )call (block (expression_statement (assignment (identifier_price) identifier_price (attribute (identifier_self) identifier_self (identifier_close) identifier_close )attribute )assignment )expression_statement )block )if_statement (return_statement (identifier_price) identifier_price )return_statement )block )function_definition )module
Return the first available one of * last price if within current bid/ask; * average of bid and ask (midpoint); * close price.
(module (function_definition (function_name_get_tags) function_name_get_tags (parameters )parameters (block (expression_statement (assignment (identifier_tags) identifier_tags (call (attribute (call (identifier_getattr) identifier_getattr (argument_list (attribute (identifier_flask) identifier_flask (identifier_g) identifier_g )attribute (string_'bukudb') string_'bukudb' (call (identifier_get_bukudb) identifier_get_bukudb (argument_list )argument_list )call )argument_list )call (identifier_get_tag_all) identifier_get_tag_all )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (dictionary (pair (string_'tags') string_'tags' (subscript (identifier_tags) identifier_tags (integer_0) integer_0 )subscript )pair )dictionary )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_request) identifier_request (identifier_path) identifier_path )attribute (identifier_startswith) identifier_startswith )attribute (argument_list (string_'/api/') string_'/api/' )argument_list )call (block (expression_statement (assignment (identifier_res) identifier_res (call (identifier_jsonify) identifier_jsonify (argument_list (identifier_result) identifier_result )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_res) identifier_res (call (identifier_render_template) identifier_render_template (argument_list (string_'bukuserver/tags.html') string_'bukuserver/tags.html' (keyword_argument (identifier_result) identifier_result (identifier_result) identifier_result )keyword_argument )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
get tags.
(module (function_definition (function_name__read_nowait) function_name__read_nowait (parameters (identifier_self) identifier_self (typed_parameter (identifier_n) identifier_n (type (identifier_int) identifier_int )type )typed_parameter )parameters (type (identifier_bytes) identifier_bytes )type (block (expression_statement (assignment (identifier_chunks) identifier_chunks (list )list )assignment )expression_statement (while_statement (attribute (identifier_self) identifier_self (identifier__buffer) identifier__buffer )attribute (block (expression_statement (assignment (identifier_chunk) identifier_chunk (call (attribute (identifier_self) identifier_self (identifier__read_nowait_chunk) identifier__read_nowait_chunk )attribute (argument_list (identifier_n) identifier_n )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_chunks) identifier_chunks (identifier_append) identifier_append )attribute (argument_list (identifier_chunk) identifier_chunk )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_n) identifier_n (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator (block (expression_statement (augmented_assignment (identifier_n) identifier_n (call (identifier_len) identifier_len (argument_list (identifier_chunk) identifier_chunk )argument_list )call )augmented_assignment )expression_statement (if_statement (comparison_operator (identifier_n) identifier_n (integer_0) integer_0 )comparison_operator (block (break_statement )break_statement )block )if_statement )block )if_statement )block )while_statement (return_statement (conditional_expression (call (attribute (string_b'') string_b'' (identifier_join) identifier_join )attribute (argument_list (identifier_chunks) identifier_chunks )argument_list )call (identifier_chunks) identifier_chunks (string_b'') string_b'' )conditional_expression )return_statement )block )function_definition )module
Read not more than n bytes, or whole buffer is n == -1
(module (function_definition (function_name_firstAttr) function_name_firstAttr (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_attrs) identifier_attrs )list_splat_pattern )parameters (block (for_statement (identifier_attr) identifier_attr (identifier_attrs) identifier_attrs (block (expression_statement (assignment (identifier_value) identifier_value (call (attribute (attribute (identifier_self) identifier_self (identifier___dict__) identifier___dict__ )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_attr) identifier_attr )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_value) identifier_value (None) None )comparison_operator (block (return_statement (identifier_value) identifier_value )return_statement )block )if_statement )block )for_statement )block )function_definition )module
Return the first attribute in attrs that is not None.
(module (function_definition (function_name_fixchars) function_name_fixchars (parameters (identifier_self) identifier_self (identifier_text) identifier_text )parameters (block (expression_statement (assignment (identifier_keys) identifier_keys (call (attribute (string_'') string_'' (identifier_join) identifier_join )attribute (argument_list (call (attribute (attribute (identifier_Config) identifier_Config (identifier_CHARFIXES) identifier_CHARFIXES )attribute (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_values) identifier_values (call (attribute (string_'') string_'' (identifier_join) identifier_join )attribute (argument_list (call (attribute (attribute (identifier_Config) identifier_Config (identifier_CHARFIXES) identifier_CHARFIXES )attribute (identifier_values) identifier_values )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_fixed) identifier_fixed (call (attribute (identifier_text) identifier_text (identifier_translate) identifier_translate )attribute (argument_list (call (attribute (identifier_str) identifier_str (identifier_maketrans) identifier_maketrans )attribute (argument_list (identifier_keys) identifier_keys (identifier_values) identifier_values )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_fixed) identifier_fixed (identifier_text) identifier_text )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_modified) identifier_modified )attribute (True) True )assignment )expression_statement )block )if_statement (return_statement (identifier_fixed) identifier_fixed )return_statement )block )function_definition )module
Find and replace problematic characters.
(module (function_definition (function_name_get_logger) function_name_get_logger (parameters (identifier_name) identifier_name )parameters (block (expression_statement (assignment (identifier_logger) identifier_logger (call (attribute (identifier_logging) identifier_logging (identifier_getLogger) identifier_getLogger )attribute (argument_list (identifier_name) identifier_name )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_setLevel) identifier_setLevel )attribute (argument_list (attribute (identifier_logging) identifier_logging (identifier_INFO) identifier_INFO )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_file_handler) identifier_file_handler (call (attribute (identifier_logging) identifier_logging (identifier_FileHandler) identifier_FileHandler )attribute (argument_list (identifier_log_path) identifier_log_path )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_file_handler) identifier_file_handler (identifier_setLevel) identifier_setLevel )attribute (argument_list (attribute (identifier_logging) identifier_logging (identifier_INFO) identifier_INFO )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_formatter) identifier_formatter (call (attribute (identifier_logging) identifier_logging (identifier_Formatter) identifier_Formatter )attribute (argument_list (string_'%(asctime)s %(name)12s %(levelname)8s %(lineno)s %(message)s') string_'%(asctime)s %(name)12s %(levelname)8s %(lineno)s %(message)s' (keyword_argument (identifier_datefmt) identifier_datefmt (string_'%m/%d/%Y %I:%M:%S %p') string_'%m/%d/%Y %I:%M:%S %p' )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_file_handler) identifier_file_handler (identifier_setFormatter) identifier_setFormatter )attribute (argument_list (identifier_formatter) identifier_formatter )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_addHandler) identifier_addHandler )attribute (argument_list (identifier_file_handler) identifier_file_handler )argument_list )call )expression_statement (return_statement (identifier_logger) identifier_logger )return_statement )block )function_definition )module
Return a logger with a file handler.
(module (function_definition (function_name_on_right_click_listctrl) function_name_on_right_click_listctrl (parameters (identifier_self) identifier_self (identifier_event) identifier_event )parameters (block (expression_statement (assignment (identifier_g_index) identifier_g_index (call (attribute (identifier_event) identifier_event (identifier_GetIndex) identifier_GetIndex )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (subscript (subscript (subscript (attribute (identifier_self) identifier_self (identifier_Data) identifier_Data )attribute (attribute (identifier_self) identifier_self (identifier_s) identifier_s )attribute )subscript (string_'measurement_flag') string_'measurement_flag' )subscript (identifier_g_index) identifier_g_index )subscript (string_'g') string_'g' )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_mark_meas_bad) identifier_mark_meas_bad )attribute (argument_list (identifier_g_index) identifier_g_index )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_mark_meas_good) identifier_mark_meas_good )attribute (argument_list (identifier_g_index) identifier_g_index )argument_list )call )expression_statement )block )else_clause )if_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_data_model) identifier_data_model )attribute (float_3.0) float_3.0 )comparison_operator (block (expression_statement (call (attribute (subscript (attribute (attribute (identifier_self) identifier_self (identifier_con) identifier_con )attribute (identifier_tables) identifier_tables )attribute (string_'measurements') string_'measurements' )subscript (identifier_write_magic_file) identifier_write_magic_file )attribute (argument_list (keyword_argument (identifier_dir_path) identifier_dir_path (attribute (identifier_self) identifier_self (identifier_WD) identifier_WD )attribute )keyword_argument )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_pmag) identifier_pmag (identifier_magic_write) identifier_magic_write )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_WD) identifier_WD )attribute (string_"magic_measurements.txt") string_"magic_measurements.txt" )argument_list )call (attribute (identifier_self) identifier_self (identifier_mag_meas_data) identifier_mag_meas_data )attribute (string_"magic_measurements") string_"magic_measurements" )argument_list )call )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_recalculate_current_specimen_interpreatations) identifier_recalculate_current_specimen_interpreatations )attribute (argument_list )argument_list )call )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_ie_open) identifier_ie_open )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_ie) identifier_ie )attribute (identifier_update_current_fit_data) identifier_update_current_fit_data )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_calculate_high_levels_data) identifier_calculate_high_levels_data )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_update_selection) identifier_update_selection )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
right click on the listctrl toggles measurement bad
(module (function_definition (function_name_delete_service) function_name_delete_service (parameters (identifier_resource_root) identifier_resource_root (identifier_name) identifier_name (default_parameter (identifier_cluster_name) identifier_cluster_name (string_"default") string_"default" )default_parameter )parameters (block (return_statement (call (identifier_call) identifier_call (argument_list (attribute (identifier_resource_root) identifier_resource_root (identifier_delete) identifier_delete )attribute (binary_operator (string_"%s/%s") string_"%s/%s" (tuple (binary_operator (identifier_SERVICES_PATH) identifier_SERVICES_PATH (tuple (identifier_cluster_name) identifier_cluster_name )tuple )binary_operator (identifier_name) identifier_name )tuple )binary_operator (identifier_ApiService) identifier_ApiService )argument_list )call )return_statement )block )function_definition )module
Delete a service by name @param resource_root: The root Resource object. @param name: Service name @param cluster_name: Cluster name @return: The deleted ApiService object
(module (function_definition (function_name__read_and_batch_from_files) function_name__read_and_batch_from_files (parameters (identifier_file_pattern) identifier_file_pattern (identifier_batch_size) identifier_batch_size (identifier_max_length) identifier_max_length (identifier_num_cpu_cores) identifier_num_cpu_cores (identifier_shuffle) identifier_shuffle (identifier_repeat) identifier_repeat )parameters (block (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (attribute (attribute (identifier_tf) identifier_tf (identifier_data) identifier_data )attribute (identifier_Dataset) identifier_Dataset )attribute (identifier_list_files) identifier_list_files )attribute (argument_list (identifier_file_pattern) identifier_file_pattern )argument_list )call )assignment )expression_statement (if_statement (identifier_shuffle) identifier_shuffle (block (expression_statement (call (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_transformer_print) identifier_transformer_print )attribute (argument_list (keyword_argument (identifier_key) identifier_key (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_INPUT_ORDER) identifier_INPUT_ORDER )attribute )keyword_argument )argument_list )call )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_shuffle) identifier_shuffle )attribute (argument_list (keyword_argument (identifier_buffer_size) identifier_buffer_size (identifier__FILE_SHUFFLE_BUFFER) identifier__FILE_SHUFFLE_BUFFER )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_apply) identifier_apply )attribute (argument_list (call (attribute (attribute (attribute (identifier_tf) identifier_tf (identifier_contrib) identifier_contrib )attribute (identifier_data) identifier_data )attribute (identifier_parallel_interleave) identifier_parallel_interleave )attribute (argument_list (identifier__load_records) identifier__load_records (keyword_argument (identifier_sloppy) identifier_sloppy (identifier_shuffle) identifier_shuffle )keyword_argument (keyword_argument (identifier_cycle_length) identifier_cycle_length (identifier_num_cpu_cores) identifier_num_cpu_cores )keyword_argument )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_map) identifier_map )attribute (argument_list (identifier__parse_example) identifier__parse_example (keyword_argument (identifier_num_parallel_calls) identifier_num_parallel_calls (identifier_num_cpu_cores) identifier_num_cpu_cores )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_filter) identifier_filter )attribute (argument_list (lambda (lambda_parameters (identifier_x) identifier_x (identifier_y) identifier_y )lambda_parameters (call (identifier__filter_max_length) identifier__filter_max_length (argument_list (tuple (identifier_x) identifier_x (identifier_y) identifier_y )tuple (identifier_max_length) identifier_max_length )argument_list )call )lambda )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_transformer_print) identifier_transformer_print )attribute (argument_list (keyword_argument (identifier_key) identifier_key (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_INPUT_BATCH_SIZE) identifier_INPUT_BATCH_SIZE )attribute )keyword_argument (keyword_argument (identifier_value) identifier_value (identifier_batch_size) identifier_batch_size )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_transformer_print) identifier_transformer_print )attribute (argument_list (keyword_argument (identifier_key) identifier_key (attribute (identifier_mlperf_log) identifier_mlperf_log (identifier_INPUT_MAX_LENGTH) identifier_INPUT_MAX_LENGTH )attribute )keyword_argument (keyword_argument (identifier_value) identifier_value (identifier_max_length) identifier_max_length )keyword_argument )argument_list )call )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (identifier__batch_examples) identifier__batch_examples (argument_list (identifier_dataset) identifier_dataset (identifier_batch_size) identifier_batch_size (identifier_max_length) identifier_max_length )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_repeat) identifier_repeat )attribute (argument_list (identifier_repeat) identifier_repeat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dataset) identifier_dataset (call (attribute (identifier_dataset) identifier_dataset (identifier_prefetch) identifier_prefetch )attribute (argument_list (integer_1) integer_1 )argument_list )call )assignment )expression_statement (return_statement (identifier_dataset) identifier_dataset )return_statement )block )function_definition )module
Create dataset where each item is a dict of "inputs" and "targets". Args: file_pattern: String used to match the input TFRecord files. batch_size: Maximum number of tokens per batch of examples max_length: Maximum number of tokens per example num_cpu_cores: Number of cpu cores for parallel input processing. shuffle: If true, randomizes order of elements. repeat: Number of times to repeat the dataset. If None, the dataset is repeated forever. Returns: tf.data.Dataset object containing examples loaded from the files.
(module (function_definition (function_name_add_leaves) function_name_add_leaves (parameters (identifier_self) identifier_self (identifier_values_array) identifier_values_array (default_parameter (identifier_do_hash) identifier_do_hash (False) False )default_parameter )parameters (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_tree) identifier_tree )attribute (string_'is_ready') string_'is_ready' )subscript (False) False )assignment )expression_statement (expression_statement (list_comprehension (call (attribute (identifier_self) identifier_self (identifier__add_leaf) identifier__add_leaf )attribute (argument_list (identifier_value) identifier_value (identifier_do_hash) identifier_do_hash )argument_list )call (for_in_clause (identifier_value) identifier_value (identifier_values_array) identifier_values_array )for_in_clause )list_comprehension )expression_statement )block )function_definition )module
Add leaves to the tree. Similar to chainpoint merkle tree library, this accepts hash values as an array of Buffers or hex strings. :param values_array: array of values to add :param do_hash: whether to hash the values before inserting
(module (function_definition (function_name_get_default_config) function_name_get_default_config (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_config) identifier_config (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_XFSCollector) identifier_XFSCollector (identifier_self) identifier_self )argument_list )call (identifier_get_default_config) identifier_get_default_config )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_config) identifier_config (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'path') string_'path' (string_'xfs') string_'xfs' )pair )dictionary )argument_list )call )expression_statement (return_statement (identifier_config) identifier_config )return_statement )block )function_definition )module
Returns the xfs collector settings
(module (function_definition (function_name_push_reindex_to_actions_pool) function_name_push_reindex_to_actions_pool (parameters (identifier_obj) identifier_obj (default_parameter (identifier_idxs) identifier_idxs (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_indexes) identifier_indexes (boolean_operator (boolean_operator (identifier_idxs) identifier_idxs (identifier_idxs) identifier_idxs )boolean_operator (list )list )boolean_operator )assignment )expression_statement (expression_statement (assignment (identifier_pool) identifier_pool (call (attribute (identifier_ActionHandlerPool) identifier_ActionHandlerPool (identifier_get_instance) identifier_get_instance )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_pool) identifier_pool (identifier_push) identifier_push )attribute (argument_list (identifier_obj) identifier_obj (string_"reindex") string_"reindex" (keyword_argument (identifier_success) identifier_success (True) True )keyword_argument (keyword_argument (identifier_idxs) identifier_idxs (identifier_indexes) identifier_indexes )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Push a reindex job to the actions handler pool
(module (function_definition (function_name_map_sequence) function_name_map_sequence (parameters (identifier_stmts_in) identifier_stmts_in (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (import_from_statement (dotted_name (identifier_indra) identifier_indra (identifier_preassembler) identifier_preassembler (identifier_sitemapper) identifier_sitemapper )dotted_name (dotted_name (identifier_SiteMapper) identifier_SiteMapper )dotted_name (dotted_name (identifier_default_site_map) identifier_default_site_map )dotted_name )import_from_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_'Mapping sites on %d statements...') string_'Mapping sites on %d statements...' (call (identifier_len) identifier_len (argument_list (identifier_stmts_in) identifier_stmts_in )argument_list )call )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_kwarg_list) identifier_kwarg_list (list (string_'do_methionine_offset') string_'do_methionine_offset' (string_'do_orthology_mapping') string_'do_orthology_mapping' (string_'do_isoform_mapping') string_'do_isoform_mapping' )list )assignment )expression_statement (expression_statement (assignment (identifier_sm) identifier_sm (call (identifier_SiteMapper) identifier_SiteMapper (argument_list (identifier_default_site_map) identifier_default_site_map (keyword_argument (identifier_use_cache) identifier_use_cache (call (attribute (identifier_kwargs) identifier_kwargs (identifier_pop) identifier_pop )attribute (argument_list (string_'use_cache') string_'use_cache' (False) False )argument_list )call )keyword_argument (dictionary_splat (call (identifier__filter) identifier__filter (argument_list (identifier_kwargs) identifier_kwargs (identifier_kwarg_list) identifier_kwarg_list )argument_list )call )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_valid) identifier_valid (identifier_mapped) identifier_mapped )pattern_list (call (attribute (identifier_sm) identifier_sm (identifier_map_sites) identifier_map_sites )attribute (argument_list (identifier_stmts_in) identifier_stmts_in )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_correctly_mapped_stmts) identifier_correctly_mapped_stmts (list )list )assignment )expression_statement (for_statement (identifier_ms) identifier_ms (identifier_mapped) identifier_mapped (block (expression_statement (assignment (identifier_correctly_mapped) identifier_correctly_mapped (call (identifier_all) identifier_all (argument_list (list_comprehension (call (attribute (identifier_mm) identifier_mm (identifier_has_mapping) identifier_has_mapping )attribute (argument_list )argument_list )call (for_in_clause (identifier_mm) identifier_mm (attribute (identifier_ms) identifier_ms (identifier_mapped_mods) identifier_mapped_mods )attribute )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (if_statement (identifier_correctly_mapped) identifier_correctly_mapped (block (expression_statement (call (attribute (identifier_correctly_mapped_stmts) identifier_correctly_mapped_stmts (identifier_append) identifier_append )attribute (argument_list (attribute (identifier_ms) identifier_ms (identifier_mapped_stmt) identifier_mapped_stmt )attribute )argument_list )call )expression_statement )block )if_statement )block )for_statement (expression_statement (assignment (identifier_stmts_out) identifier_stmts_out (binary_operator (identifier_valid) identifier_valid (identifier_correctly_mapped_stmts) identifier_correctly_mapped_stmts )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_'%d statements with valid sites') string_'%d statements with valid sites' (call (identifier_len) identifier_len (argument_list (identifier_stmts_out) identifier_stmts_out )argument_list )call )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_dump_pkl) identifier_dump_pkl (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'save') string_'save' )argument_list )call )assignment )expression_statement (if_statement (identifier_dump_pkl) identifier_dump_pkl (block (expression_statement (call (identifier_dump_statements) identifier_dump_statements (argument_list (identifier_stmts_out) identifier_stmts_out (identifier_dump_pkl) identifier_dump_pkl )argument_list )call )expression_statement )block )if_statement (delete_statement (identifier_sm) identifier_sm )delete_statement (return_statement (identifier_stmts_out) identifier_stmts_out )return_statement )block )function_definition )module
Map sequences using the SiteMapper. Parameters ---------- stmts_in : list[indra.statements.Statement] A list of statements to map. do_methionine_offset : boolean Whether to check for off-by-one errors in site position (possibly) attributable to site numbering from mature proteins after cleavage of the initial methionine. If True, checks the reference sequence for a known modification at 1 site position greater than the given one; if there exists such a site, creates the mapping. Default is True. do_orthology_mapping : boolean Whether to check sequence positions for known modification sites in mouse or rat sequences (based on PhosphoSitePlus data). If a mouse/rat site is found that is linked to a site in the human reference sequence, a mapping is created. Default is True. do_isoform_mapping : boolean Whether to check sequence positions for known modifications in other human isoforms of the protein (based on PhosphoSitePlus data). If a site is found that is linked to a site in the human reference sequence, a mapping is created. Default is True. use_cache : boolean If True, a cache will be created/used from the laction specified by SITEMAPPER_CACHE_PATH, defined in your INDRA config or the environment. If False, no cache is used. For more details on the cache, see the SiteMapper class definition. save : Optional[str] The name of a pickle file to save the results (stmts_out) into. Returns ------- stmts_out : list[indra.statements.Statement] A list of mapped statements.
(module (function_definition (function_name_load) function_name_load (parameters (identifier_path) identifier_path (default_parameter (identifier_use_nep8) identifier_use_nep8 (True) True )default_parameter )parameters (block (expression_statement (assignment (attribute (identifier_Compiler) identifier_Compiler (identifier___instance) identifier___instance )attribute (None) None )assignment )expression_statement (expression_statement (assignment (identifier_compiler) identifier_compiler (call (attribute (identifier_Compiler) identifier_Compiler (identifier_instance) identifier_instance )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_compiler) identifier_compiler (identifier_nep8) identifier_nep8 )attribute (identifier_use_nep8) identifier_use_nep8 )assignment )expression_statement (expression_statement (assignment (attribute (identifier_compiler) identifier_compiler (identifier_entry_module) identifier_entry_module )attribute (call (identifier_Module) identifier_Module (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (return_statement (identifier_compiler) identifier_compiler )return_statement )block )function_definition )module
Call `load` to load a Python file to be compiled but not to write to .avm :param path: the path of the Python file to compile :return: The instance of the compiler The following returns the compiler object for inspection. .. code-block:: python from boa.compiler import Compiler compiler = Compiler.load('path/to/your/file.py')
(module (function_definition (function_name__update_context_field_binary_composition) function_name__update_context_field_binary_composition (parameters (identifier_present_locations) identifier_present_locations (identifier_expression) identifier_expression )parameters (block (if_statement (not_operator (call (identifier_any) identifier_any (argument_list (tuple (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_expression) identifier_expression (identifier_left) identifier_left )attribute (identifier_ContextField) identifier_ContextField )argument_list )call (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_expression) identifier_expression (identifier_right) identifier_right )attribute (identifier_ContextField) identifier_ContextField )argument_list )call )tuple )argument_list )call )not_operator (block (raise_statement (call (identifier_AssertionError) identifier_AssertionError (argument_list (call (attribute (concatenated_string (string_u'Received a BinaryComposition {} without any ContextField ') string_u'Received a BinaryComposition {} without any ContextField ' (string_u'operands. This should never happen.') string_u'operands. This should never happen.' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (identifier_expression) identifier_expression )argument_list )call )argument_list )call )raise_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_expression) identifier_expression (identifier_left) identifier_left )attribute (identifier_ContextField) identifier_ContextField )argument_list )call (block (expression_statement (assignment (identifier_context_field) identifier_context_field (attribute (identifier_expression) identifier_expression (identifier_left) identifier_left )attribute )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_location_name) identifier_location_name (identifier__) identifier__ )pattern_list (call (attribute (attribute (identifier_context_field) identifier_context_field (identifier_location) identifier_location )attribute (identifier_get_location_name) identifier_get_location_name )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_location_name) identifier_location_name (identifier_present_locations) identifier_present_locations )comparison_operator (block (return_statement (identifier_TrueLiteral) identifier_TrueLiteral )return_statement )block )if_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_expression) identifier_expression (identifier_right) identifier_right )attribute (identifier_ContextField) identifier_ContextField )argument_list )call (block (expression_statement (assignment (identifier_context_field) identifier_context_field (attribute (identifier_expression) identifier_expression (identifier_right) identifier_right )attribute )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_location_name) identifier_location_name (identifier__) identifier__ )pattern_list (call (attribute (attribute (identifier_context_field) identifier_context_field (identifier_location) identifier_location )attribute (identifier_get_location_name) identifier_get_location_name )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_location_name) identifier_location_name (identifier_present_locations) identifier_present_locations )comparison_operator (block (return_statement (identifier_TrueLiteral) identifier_TrueLiteral )return_statement )block )if_statement )block )if_statement (return_statement (identifier_expression) identifier_expression )return_statement )block )function_definition )module
Lower BinaryCompositions involving non-existent ContextFields to True. Args: present_locations: set of all locations in the current MatchQuery that have not been pruned expression: BinaryComposition with at least one ContextField operand Returns: TrueLiteral iff either ContextField operand is not in `present_locations`, and the original expression otherwise
(module (function_definition (function_name_find) function_name_find (parameters (identifier_self) identifier_self (identifier_header) identifier_header (default_parameter (identifier_list_type) identifier_list_type (None) None )default_parameter )parameters (block (for_statement (identifier_chunk) identifier_chunk (identifier_self) identifier_self (block (if_statement (boolean_operator (comparison_operator (attribute (identifier_chunk) identifier_chunk (identifier_header) identifier_header )attribute (identifier_header) identifier_header )comparison_operator (parenthesized_expression (boolean_operator (comparison_operator (identifier_list_type) identifier_list_type (None) None )comparison_operator (parenthesized_expression (boolean_operator (comparison_operator (identifier_header) identifier_header (identifier_list_headers) identifier_list_headers )comparison_operator (comparison_operator (attribute (identifier_chunk) identifier_chunk (identifier_type) identifier_type )attribute (identifier_list_type) identifier_list_type )comparison_operator )boolean_operator )parenthesized_expression )boolean_operator )parenthesized_expression )boolean_operator (block (return_statement (identifier_chunk) identifier_chunk )return_statement )block (elif_clause (comparison_operator (attribute (identifier_chunk) identifier_chunk (identifier_header) identifier_header )attribute (identifier_list_headers) identifier_list_headers )comparison_operator (block (try_statement (block (expression_statement (assignment (identifier_result) identifier_result (call (attribute (identifier_chunk) identifier_chunk (identifier_find) identifier_find )attribute (argument_list (identifier_header) identifier_header (identifier_list_type) identifier_list_type )argument_list )call )assignment )expression_statement (return_statement (identifier_result) identifier_result )return_statement )block (except_clause (attribute (identifier_chunk) identifier_chunk (identifier_NotFound) identifier_NotFound )attribute (block (pass_statement )pass_statement )block )except_clause )try_statement )block )elif_clause )if_statement )block )for_statement (if_statement (comparison_operator (identifier_list_type) identifier_list_type (None) None )comparison_operator (block (raise_statement (call (attribute (identifier_self) identifier_self (identifier_NotFound) identifier_NotFound )attribute (argument_list (call (attribute (string_'Chunk \'{0}\' not found.') string_'Chunk \'{0}\' not found.' (identifier_format) identifier_format )attribute (argument_list (identifier_header) identifier_header )argument_list )call )argument_list )call )raise_statement )block (else_clause (block (raise_statement (call (attribute (identifier_self) identifier_self (identifier_NotFound) identifier_NotFound )attribute (argument_list (call (attribute (string_'List \'{0} {1}\' not found.') string_'List \'{0} {1}\' not found.' (identifier_format) identifier_format )attribute (argument_list (identifier_header) identifier_header (identifier_list_type) identifier_list_type )argument_list )call )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Find the first chunk with specified header and optional list type.
(module (function_definition (function_name_summary) function_name_summary (parameters (identifier_app) identifier_app )parameters (block (expression_statement (assignment (identifier_r) identifier_r (call (attribute (identifier_requests) identifier_requests (identifier_get) identifier_get )attribute (argument_list (call (attribute (string_'https://{}.herokuapp.com/summary') string_'https://{}.herokuapp.com/summary' (identifier_format) identifier_format )attribute (argument_list (identifier_app) identifier_app )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_summary) identifier_summary (subscript (call (attribute (identifier_r) identifier_r (identifier_json) identifier_json )attribute (argument_list )argument_list )call (string_'summary') string_'summary' )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"\nstatus \t| count") string_"\nstatus \t| count" )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"----------------") string_"----------------" )argument_list )call )expression_statement (for_statement (identifier_s) identifier_s (identifier_summary) identifier_summary (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (call (attribute (string_"{}\t| {}") string_"{}\t| {}" (identifier_format) identifier_format )attribute (argument_list (subscript (identifier_s) identifier_s (integer_0) integer_0 )subscript (subscript (identifier_s) identifier_s (integer_1) integer_1 )subscript )argument_list )call )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_num_101s) identifier_num_101s (call (identifier_sum) identifier_sum (argument_list (list_comprehension (subscript (identifier_s) identifier_s (integer_1) integer_1 )subscript (for_in_clause (identifier_s) identifier_s (identifier_summary) identifier_summary )for_in_clause (if_clause (comparison_operator (subscript (identifier_s) identifier_s (integer_0) integer_0 )subscript (integer_101) integer_101 )comparison_operator )if_clause )list_comprehension )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_num_10xs) identifier_num_10xs (call (identifier_sum) identifier_sum (argument_list (list_comprehension (subscript (identifier_s) identifier_s (integer_1) integer_1 )subscript (for_in_clause (identifier_s) identifier_s (identifier_summary) identifier_summary )for_in_clause (if_clause (comparison_operator (subscript (identifier_s) identifier_s (integer_0) integer_0 )subscript (integer_100) integer_100 )comparison_operator )if_clause )list_comprehension )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_num_10xs) identifier_num_10xs (integer_0) integer_0 )comparison_operator (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (call (attribute (string_"\nYield: {:.2%}") string_"\nYield: {:.2%}" (identifier_format) identifier_format )attribute (argument_list (binary_operator (binary_operator (float_1.0) float_1.0 (identifier_num_101s) identifier_num_101s )binary_operator (identifier_num_10xs) identifier_num_10xs )binary_operator )argument_list )call )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Print a summary of a deployed app's status.
(module (function_definition (function_name_to_array) function_name_to_array (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_array) identifier_array (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_WebhookInfo) identifier_WebhookInfo (identifier_self) identifier_self )argument_list )call (identifier_to_array) identifier_to_array )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'url') string_'url' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_url) identifier_url )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'has_custom_certificate') string_'has_custom_certificate' )subscript (call (identifier_bool) identifier_bool (argument_list (attribute (identifier_self) identifier_self (identifier_has_custom_certificate) identifier_has_custom_certificate )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'pending_update_count') string_'pending_update_count' )subscript (call (identifier_int) identifier_int (argument_list (attribute (identifier_self) identifier_self (identifier_pending_update_count) identifier_pending_update_count )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_last_error_date) identifier_last_error_date )attribute (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'last_error_date') string_'last_error_date' )subscript (call (identifier_int) identifier_int (argument_list (attribute (identifier_self) identifier_self (identifier_last_error_date) identifier_last_error_date )attribute )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_last_error_message) identifier_last_error_message )attribute (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'last_error_message') string_'last_error_message' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_last_error_message) identifier_last_error_message )attribute )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_max_connections) identifier_max_connections )attribute (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'max_connections') string_'max_connections' )subscript (call (identifier_int) identifier_int (argument_list (attribute (identifier_self) identifier_self (identifier_max_connections) identifier_max_connections )attribute )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_allowed_updates) identifier_allowed_updates )attribute (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'allowed_updates') string_'allowed_updates' )subscript (call (attribute (identifier_self) identifier_self (identifier__as_array) identifier__as_array )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_allowed_updates) identifier_allowed_updates )attribute )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_array) identifier_array )return_statement )block )function_definition )module
Serializes this WebhookInfo to a dictionary. :return: dictionary representation of this object. :rtype: dict
(module (function_definition (function_name_is_stalemate) function_name_is_stalemate (parameters (identifier_self) identifier_self )parameters (type (identifier_bool) identifier_bool )type (block (if_statement (call (attribute (identifier_self) identifier_self (identifier_is_check) identifier_is_check )attribute (argument_list )argument_list )call (block (return_statement (False) False )return_statement )block )if_statement (if_statement (call (attribute (identifier_self) identifier_self (identifier_is_variant_end) identifier_is_variant_end )attribute (argument_list )argument_list )call (block (return_statement (False) False )return_statement )block )if_statement (return_statement (not_operator (call (identifier_any) identifier_any (argument_list (call (attribute (identifier_self) identifier_self (identifier_generate_legal_moves) identifier_generate_legal_moves )attribute (argument_list )argument_list )call )argument_list )call )not_operator )return_statement )block )function_definition )module
Checks if the current position is a stalemate.
(module (function_definition (function_name_listen) function_name_listen (parameters (identifier_self) identifier_self )parameters (block (expression_statement (string_"Listen for messages on channels this client has been subscribed to") string_"Listen for messages on channels this client has been subscribed to" )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_subscribed) identifier_subscribed )attribute (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_handle_message) identifier_handle_message )attribute (argument_list (await (call (attribute (identifier_self) identifier_self (identifier_parse_response) identifier_parse_response )attribute (argument_list (keyword_argument (identifier_block) identifier_block (True) True )keyword_argument )argument_list )call )await )argument_list )call )return_statement )block )if_statement )block )function_definition )module
Listen for messages on channels this client has been subscribed to
(module (function_definition (function_name__symbol_bars) function_name__symbol_bars (parameters (identifier_self) identifier_self (identifier_symbols) identifier_symbols (identifier_size) identifier_size (default_parameter (identifier__from) identifier__from (None) None )default_parameter (default_parameter (identifier_to) identifier_to (None) None )default_parameter (default_parameter (identifier_limit) identifier_limit (None) None )default_parameter )parameters (block (assert_statement (comparison_operator (identifier_size) identifier_size (tuple (string_'day') string_'day' (string_'minute') string_'minute' )tuple )comparison_operator )assert_statement (expression_statement (assignment (identifier_query_limit) identifier_query_limit (identifier_limit) identifier_limit )assignment )expression_statement (if_statement (comparison_operator (identifier_query_limit) identifier_query_limit (None) None )comparison_operator (block (expression_statement (augmented_assignment (identifier_query_limit) identifier_query_limit (integer_2) integer_2 )augmented_assignment )expression_statement )block )if_statement (decorated_definition (decorator (call (identifier_skip_http_error) identifier_skip_http_error (argument_list (tuple (integer_404) integer_404 (integer_504) integer_504 )tuple )argument_list )call )decorator (function_definition (function_name_fetch) function_name_fetch (parameters (identifier_symbol) identifier_symbol )parameters (block (expression_statement (assignment (identifier_df) identifier_df (attribute (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier__api) identifier__api )attribute (identifier_polygon) identifier_polygon )attribute (identifier_historic_agg) identifier_historic_agg )attribute (argument_list (identifier_size) identifier_size (identifier_symbol) identifier_symbol (identifier__from) identifier__from (identifier_to) identifier_to (identifier_query_limit) identifier_query_limit )argument_list )call (identifier_df) identifier_df )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_size) identifier_size (string_'minute') string_'minute' )comparison_operator (block (expression_statement (augmented_assignment (attribute (identifier_df) identifier_df (identifier_index) identifier_index )attribute (call (attribute (identifier_pd) identifier_pd (identifier_Timedelta) identifier_Timedelta )attribute (argument_list (string_'1min') string_'1min' )argument_list )call )augmented_assignment )expression_statement (expression_statement (assignment (identifier_mask) identifier_mask (call (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier__cal) identifier__cal )attribute (identifier_minutes_in_range) identifier_minutes_in_range )attribute (argument_list (subscript (attribute (identifier_df) identifier_df (identifier_index) identifier_index )attribute (integer_0) integer_0 )subscript (subscript (attribute (identifier_df) identifier_df (identifier_index) identifier_index )attribute (unary_operator (integer_1) integer_1 )unary_operator )subscript )argument_list )call (identifier_tz_convert) identifier_tz_convert )attribute (argument_list (identifier_NY) identifier_NY )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_df) identifier_df (call (attribute (identifier_df) identifier_df (identifier_reindex) identifier_reindex )attribute (argument_list (identifier_mask) identifier_mask )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_limit) identifier_limit (None) None )comparison_operator (block (expression_statement (assignment (identifier_df) identifier_df (subscript (attribute (identifier_df) identifier_df (identifier_iloc) identifier_iloc )attribute (slice (unary_operator (identifier_limit) identifier_limit )unary_operator (colon) colon )slice )subscript )assignment )expression_statement )block )if_statement (return_statement (identifier_df) identifier_df )return_statement )block )function_definition )decorated_definition (return_statement (call (call (identifier_parallelize) identifier_parallelize (argument_list (identifier_fetch) identifier_fetch )argument_list )call (argument_list (identifier_symbols) identifier_symbols )argument_list )call )return_statement )block )function_definition )module
Query historic_agg either minute or day in parallel for multiple symbols, and return in dict. symbols: list[str] size: str ('day', 'minute') _from: str or pd.Timestamp to: str or pd.Timestamp limit: str or int return: dict[str -> pd.DataFrame]
(module (function_definition (function_name_encode_task) function_name_encode_task (parameters (identifier_task) identifier_task )parameters (block (expression_statement (assignment (identifier_task) identifier_task (call (attribute (identifier_task) identifier_task (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'tags') string_'tags' (identifier_task) identifier_task )comparison_operator (block (expression_statement (assignment (subscript (identifier_task) identifier_task (string_'tags') string_'tags' )subscript (call (attribute (string_',') string_',' (identifier_join) identifier_join )attribute (argument_list (subscript (identifier_task) identifier_task (string_'tags') string_'tags' )subscript )argument_list )call )assignment )expression_statement )block )if_statement (for_statement (identifier_k) identifier_k (identifier_task) identifier_task (block (for_statement (pattern_list (identifier_unsafe) identifier_unsafe (identifier_safe) identifier_safe )pattern_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (identifier_encode_replacements) identifier_encode_replacements )argument_list )call (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (attribute (identifier_six) identifier_six (identifier_string_types) identifier_string_types )attribute )argument_list )call (block (expression_statement (assignment (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (call (attribute (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (identifier_replace) identifier_replace )attribute (argument_list (identifier_unsafe) identifier_unsafe (identifier_safe) identifier_safe )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (attribute (identifier_datetime) identifier_datetime (identifier_datetime) identifier_datetime )attribute )argument_list )call (block (expression_statement (assignment (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (call (attribute (subscript (identifier_task) identifier_task (identifier_k) identifier_k )subscript (identifier_strftime) identifier_strftime )attribute (argument_list (string_"%Y%m%dT%M%H%SZ") string_"%Y%m%dT%M%H%SZ" )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (binary_operator (string_"[%s]\n") string_"[%s]\n" (call (attribute (string_" ") string_" " (identifier_join) identifier_join )attribute (argument_list (list_comprehension (binary_operator (string_"%s:\"%s\"") string_"%s:\"%s\"" (tuple (identifier_k) identifier_k (identifier_v) identifier_v )tuple )binary_operator (for_in_clause (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (identifier_sorted) identifier_sorted (argument_list (call (attribute (identifier_task) identifier_task (identifier_items) identifier_items )attribute (argument_list )argument_list )call (keyword_argument (identifier_key) identifier_key (call (identifier_itemgetter) identifier_itemgetter (argument_list (integer_0) integer_0 )argument_list )call )keyword_argument )argument_list )call )for_in_clause )list_comprehension )argument_list )call )binary_operator )return_statement )block )function_definition )module
Convert a dict-like task to its string representation
(module (function_definition (function_name_from_columns) function_name_from_columns (parameters (identifier_columns) identifier_columns )parameters (block (expression_statement (assignment (identifier_data) identifier_data (list_comprehension (list_comprehension (subscript (identifier_column) identifier_column (identifier_i) identifier_i )subscript (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (call (identifier_len) identifier_len (argument_list (identifier_column) identifier_column )argument_list )call )argument_list )call )for_in_clause )list_comprehension (for_in_clause (identifier_column) identifier_column (identifier_columns) identifier_columns )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (call (identifier_Matrix) identifier_Matrix (argument_list (identifier_data) identifier_data )argument_list )call )return_statement )block )function_definition )module
Parses raw columns :param columns: matrix divided into columns :return: Matrix: Merge the columns to form a matrix
(module (function_definition (function_name_alphabetical_sort) function_name_alphabetical_sort (parameters (typed_parameter (identifier_list_to_sort) identifier_list_to_sort (type (generic_type (identifier_Iterable) identifier_Iterable (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter )parameters (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type (block (return_statement (call (identifier_sorted) identifier_sorted (argument_list (identifier_list_to_sort) identifier_list_to_sort (keyword_argument (identifier_key) identifier_key (identifier_norm_fold) identifier_norm_fold )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Sorts a list of strings alphabetically. For example: ['a1', 'A11', 'A2', 'a22', 'a3'] To sort a list in place, don't call this method, which makes a copy. Instead, do this: my_list.sort(key=norm_fold) :param list_to_sort: the list being sorted :return: the sorted list
(module (function_definition (function_name_select) function_name_select (parameters (identifier_self) identifier_self (identifier_field_paths) identifier_field_paths )parameters (block (expression_statement (assignment (identifier_query) identifier_query (call (attribute (identifier_query_mod) identifier_query_mod (identifier_Query) identifier_Query )attribute (argument_list (identifier_self) identifier_self )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_query) identifier_query (identifier_select) identifier_select )attribute (argument_list (identifier_field_paths) identifier_field_paths )argument_list )call )return_statement )block )function_definition )module
Create a "select" query with this collection as parent. See :meth:`~.firestore_v1beta1.query.Query.select` for more information on this method. Args: field_paths (Iterable[str, ...]): An iterable of field paths (``.``-delimited list of field names) to use as a projection of document fields in the query results. Returns: ~.firestore_v1beta1.query.Query: A "projected" query.
(module (function_definition (function_name_to_text) function_name_to_text (parameters (identifier_path) identifier_path )parameters (block (import_statement (dotted_name (identifier_subprocess) identifier_subprocess )dotted_name )import_statement (import_from_statement (dotted_name (identifier_distutils) identifier_distutils )dotted_name (dotted_name (identifier_spawn) identifier_spawn )dotted_name )import_from_statement (if_statement (call (attribute (identifier_spawn) identifier_spawn (identifier_find_executable) identifier_find_executable )attribute (argument_list (string_"pdftotext") string_"pdftotext" )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_out) identifier_out (identifier_err) identifier_err )pattern_list (call (attribute (call (attribute (identifier_subprocess) identifier_subprocess (identifier_Popen) identifier_Popen )attribute (argument_list (list (string_"pdftotext") string_"pdftotext" (string_'-layout') string_'-layout' (string_'-enc') string_'-enc' (string_'UTF-8') string_'UTF-8' (identifier_path) identifier_path (string_'-') string_'-' )list (keyword_argument (identifier_stdout) identifier_stdout (attribute (identifier_subprocess) identifier_subprocess (identifier_PIPE) identifier_PIPE )attribute )keyword_argument )argument_list )call (identifier_communicate) identifier_communicate )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (identifier_out) identifier_out )return_statement )block (else_clause (block (raise_statement (call (identifier_EnvironmentError) identifier_EnvironmentError (argument_list (string_'pdftotext not installed. Can be downloaded from https://poppler.freedesktop.org/') string_'pdftotext not installed. Can be downloaded from https://poppler.freedesktop.org/' )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Wrapper around Poppler pdftotext. Parameters ---------- path : str path of electronic invoice in PDF Returns ------- out : str returns extracted text from pdf Raises ------ EnvironmentError: If pdftotext library is not found
(module (function_definition (function_name__link_replace) function_name__link_replace (parameters (identifier_self) identifier_self (identifier_match) identifier_match (dictionary_splat_pattern (identifier_context) identifier_context )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_url) identifier_url (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (integer_0) integer_0 )argument_list )call )assignment )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_linker) identifier_linker )attribute (block (if_statement (attribute (identifier_self) identifier_self (identifier_linker_takes_context) identifier_linker_takes_context )attribute (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_linker) identifier_linker )attribute (argument_list (identifier_url) identifier_url (identifier_context) identifier_context )argument_list )call )return_statement )block (else_clause (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_linker) identifier_linker )attribute (argument_list (identifier_url) identifier_url )argument_list )call )return_statement )block )else_clause )if_statement )block (else_clause (block (expression_statement (assignment (identifier_href) identifier_href (identifier_url) identifier_url )assignment )expression_statement (if_statement (comparison_operator (string_'://') string_'://' (identifier_href) identifier_href )comparison_operator (block (expression_statement (assignment (identifier_href) identifier_href (binary_operator (string_'http://') string_'http://' (identifier_href) identifier_href )binary_operator )assignment )expression_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_url_template) identifier_url_template )attribute (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_href) identifier_href (call (attribute (identifier_href) identifier_href (identifier_replace) identifier_replace )attribute (argument_list (string_'"') string_'"' (string_'%22') string_'%22' )argument_list )call )keyword_argument (keyword_argument (identifier_text) identifier_text (identifier_url) identifier_url )keyword_argument )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Callback for re.sub to replace link text with markup. Turns out using a callback function is actually faster than using backrefs, plus this lets us provide a hook for user customization. linker_takes_context=True means that the linker gets passed context like a standard format function.
(module (function_definition (function_name_transform_annotation) function_name_transform_annotation (parameters (identifier_self) identifier_self (identifier_ann) identifier_ann (identifier_duration) identifier_duration )parameters (block (expression_statement (assignment (identifier_intervals) identifier_intervals (call (attribute (identifier_np) identifier_np (identifier_asarray) identifier_asarray )attribute (argument_list (list (list (integer_0) integer_0 (integer_1) integer_1 )list )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_values) identifier_values (call (identifier_list) identifier_list (argument_list (list_comprehension (attribute (identifier_obs) identifier_obs (identifier_value) identifier_value )attribute (for_in_clause (identifier_obs) identifier_obs (identifier_ann) identifier_ann )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_intervals) identifier_intervals (call (attribute (identifier_np) identifier_np (identifier_tile) identifier_tile )attribute (argument_list (identifier_intervals) identifier_intervals (list (call (identifier_len) identifier_len (argument_list (identifier_values) identifier_values )argument_list )call (integer_1) integer_1 )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tags) identifier_tags (list_comprehension (identifier_v) identifier_v (for_in_clause (identifier_v) identifier_v (identifier_values) identifier_values )for_in_clause (if_clause (comparison_operator (identifier_v) identifier_v (attribute (identifier_self) identifier_self (identifier__classes) identifier__classes )attribute )comparison_operator )if_clause )list_comprehension )assignment )expression_statement (if_statement (call (identifier_len) identifier_len (argument_list (identifier_tags) identifier_tags )argument_list )call (block (expression_statement (assignment (identifier_target) identifier_target (call (attribute (call (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_encoder) identifier_encoder )attribute (identifier_transform) identifier_transform )attribute (argument_list (list (identifier_tags) identifier_tags )list )argument_list )call (identifier_astype) identifier_astype )attribute (argument_list (attribute (identifier_np) identifier_np (identifier_bool) identifier_bool )attribute )argument_list )call (identifier_max) identifier_max )attribute (argument_list (keyword_argument (identifier_axis) identifier_axis (integer_0) integer_0 )keyword_argument )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_target) identifier_target (call (attribute (identifier_np) identifier_np (identifier_zeros) identifier_zeros )attribute (argument_list (call (identifier_len) identifier_len (argument_list (attribute (identifier_self) identifier_self (identifier__classes) identifier__classes )attribute )argument_list )call (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_bool) identifier_bool )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (dictionary (pair (string_'tags') string_'tags' (identifier_target) identifier_target )pair )dictionary )return_statement )block )function_definition )module
Transform an annotation to static label encoding. Parameters ---------- ann : jams.Annotation The annotation to convert duration : number > 0 The duration of the track Returns ------- data : dict data['tags'] : np.ndarray, shape=(n_labels,) A static binary encoding of the labels
(module (function_definition (function_name_start) function_name_start (parameters (identifier_self) identifier_self (identifier_execution_history) identifier_execution_history (default_parameter (identifier_backward_execution) identifier_backward_execution (False) False )default_parameter (default_parameter (identifier_generate_run_id) identifier_generate_run_id (True) True )default_parameter )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_execution_history) identifier_execution_history )attribute (identifier_execution_history) identifier_execution_history )assignment )expression_statement (if_statement (identifier_generate_run_id) identifier_generate_run_id (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__run_id) identifier__run_id )attribute (call (identifier_run_id_generator) identifier_run_id_generator (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_backward_execution) identifier_backward_execution )attribute (call (attribute (identifier_copy) identifier_copy (identifier_copy) identifier_copy )attribute (argument_list (identifier_backward_execution) identifier_backward_execution )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_thread) identifier_thread )attribute (call (attribute (identifier_threading) identifier_threading (identifier_Thread) identifier_Thread )attribute (argument_list (keyword_argument (identifier_target) identifier_target (attribute (identifier_self) identifier_self (identifier_run) identifier_run )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_thread) identifier_thread )attribute (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Starts the execution of the state in a new thread. :return:
(module (function_definition (function_name_vote_choice_address) function_name_vote_choice_address (parameters (identifier_self) identifier_self )parameters (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_vote_id) identifier_vote_id )attribute (None) None )comparison_operator (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_"vote_id is required") string_"vote_id is required" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_addresses) identifier_addresses (list )list )assignment )expression_statement (expression_statement (assignment (identifier_vote_init_txid) identifier_vote_init_txid (call (identifier_unhexlify) identifier_unhexlify (argument_list (attribute (identifier_self) identifier_self (identifier_vote_id) identifier_vote_id )attribute )argument_list )call )assignment )expression_statement (for_statement (identifier_choice) identifier_choice (attribute (identifier_self) identifier_self (identifier_choices) identifier_choices )attribute (block (expression_statement (assignment (identifier_vote_cast_privkey) identifier_vote_cast_privkey (call (attribute (call (identifier_sha256) identifier_sha256 (argument_list (binary_operator (identifier_vote_init_txid) identifier_vote_init_txid (call (identifier_bytes) identifier_bytes (argument_list (call (attribute (call (identifier_list) identifier_list (argument_list (attribute (identifier_self) identifier_self (identifier_choices) identifier_choices )attribute )argument_list )call (identifier_index) identifier_index )attribute (argument_list (identifier_choice) identifier_choice )argument_list )call )argument_list )call )binary_operator )argument_list )call (identifier_hexdigest) identifier_hexdigest )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_addresses) identifier_addresses (identifier_append) identifier_append )attribute (argument_list (attribute (call (identifier_Kutil) identifier_Kutil (argument_list (keyword_argument (identifier_network) identifier_network (attribute (attribute (identifier_self) identifier_self (identifier_deck) identifier_deck )attribute (identifier_network) identifier_network )attribute )keyword_argument (keyword_argument (identifier_privkey) identifier_privkey (call (attribute (identifier_bytearray) identifier_bytearray (identifier_fromhex) identifier_fromhex )attribute (argument_list (identifier_vote_cast_privkey) identifier_vote_cast_privkey )argument_list )call )keyword_argument )argument_list )call (identifier_address) identifier_address )attribute )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_addresses) identifier_addresses )return_statement )block )function_definition )module
calculate the addresses on which the vote is casted.
(module (function_definition (function_name_requires_public_key) function_name_requires_public_key (parameters (identifier_func) identifier_func )parameters (block (function_definition (function_name_func_wrapper) function_name_func_wrapper (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_self) identifier_self (string_"public_key") string_"public_key" )argument_list )call (block (expression_statement (call (identifier_func) identifier_func (argument_list (identifier_self) identifier_self (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_generate_public_key) identifier_generate_public_key )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (identifier_func) identifier_func (argument_list (identifier_self) identifier_self (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition (return_statement (identifier_func_wrapper) identifier_func_wrapper )return_statement )block )function_definition )module
Decorator for functions that require the public key to be defined. By definition, this includes the private key, as such, it's enough to use this to effect definition of both public and private key.
(module (function_definition (function_name_calculate_error) function_name_calculate_error (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_numvars) identifier_numvars )attribute (identifier_error) identifier_error )attribute (float_0.) float_0. )assignment )expression_statement (expression_statement (assignment (identifier_fluxes) identifier_fluxes (attribute (attribute (identifier_self) identifier_self (identifier_sequences) identifier_sequences )attribute (identifier_fluxes) identifier_fluxes )attribute )assignment )expression_statement (for_statement (identifier_flux) identifier_flux (attribute (identifier_fluxes) identifier_fluxes (identifier_numerics) identifier_numerics )attribute (block (expression_statement (assignment (identifier_results) identifier_results (call (identifier_getattr) identifier_getattr (argument_list (attribute (identifier_fluxes) identifier_fluxes (identifier_fastaccess) identifier_fastaccess )attribute (binary_operator (string_'_%s_results') string_'_%s_results' (attribute (identifier_flux) identifier_flux (identifier_name) identifier_name )attribute )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_diff) identifier_diff (parenthesized_expression (binary_operator (subscript (identifier_results) identifier_results (attribute (attribute (identifier_self) identifier_self (identifier_numvars) identifier_numvars )attribute (identifier_idx_method) identifier_idx_method )attribute )subscript (subscript (identifier_results) identifier_results (binary_operator (attribute (attribute (identifier_self) identifier_self (identifier_numvars) identifier_numvars )attribute (identifier_idx_method) identifier_idx_method )attribute (integer_1) integer_1 )binary_operator )subscript )binary_operator )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_numvars) identifier_numvars )attribute (identifier_error) identifier_error )attribute (call (identifier_max) identifier_max (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_numvars) identifier_numvars )attribute (identifier_error) identifier_error )attribute (call (attribute (identifier_numpy) identifier_numpy (identifier_max) identifier_max )attribute (argument_list (call (attribute (identifier_numpy) identifier_numpy (identifier_abs) identifier_abs )attribute (argument_list (identifier_diff) identifier_diff )argument_list )call )argument_list )call )argument_list )call )assignment )expression_statement )block )for_statement )block )function_definition )module
Estimate the numerical error based on the fluxes calculated by the current and the last method. >>> from hydpy.models.test_v1 import * >>> parameterstep() >>> model.numvars.idx_method = 2 >>> results = numpy.asarray(fluxes.fastaccess._q_results) >>> results[:4] = 0., 3., 4., 0. >>> model.calculate_error() >>> from hydpy import round_ >>> round_(model.numvars.error) 1.0
(module (function_definition (function_name_mlt2mlon) function_name_mlt2mlon (parameters (identifier_self) identifier_self (identifier_mlt) identifier_mlt (identifier_datetime) identifier_datetime (default_parameter (identifier_ssheight) identifier_ssheight (binary_operator (integer_50) integer_50 (integer_6371) integer_6371 )binary_operator )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_ssglat) identifier_ssglat (identifier_ssglon) identifier_ssglon )pattern_list (call (attribute (identifier_helpers) identifier_helpers (identifier_subsol) identifier_subsol )attribute (argument_list (identifier_datetime) identifier_datetime )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_ssalat) identifier_ssalat (identifier_ssalon) identifier_ssalon )pattern_list (call (attribute (identifier_self) identifier_self (identifier_geo2apex) identifier_geo2apex )attribute (argument_list (identifier_ssglat) identifier_ssglat (identifier_ssglon) identifier_ssglon (identifier_ssheight) identifier_ssheight )argument_list )call )assignment )expression_statement (return_statement (binary_operator (parenthesized_expression (binary_operator (binary_operator (binary_operator (binary_operator (integer_15) integer_15 (call (attribute (identifier_np) identifier_np (identifier_float64) identifier_float64 )attribute (argument_list (identifier_mlt) identifier_mlt )argument_list )call )binary_operator (integer_180) integer_180 )binary_operator (identifier_ssalon) identifier_ssalon )binary_operator (integer_360) integer_360 )binary_operator )parenthesized_expression (integer_360) integer_360 )binary_operator )return_statement )block )function_definition )module
Computes the magnetic longitude at the specified magnetic local time and UT. Parameters ========== mlt : array_like Magnetic local time datetime : :class:`datetime.datetime` Date and time ssheight : float, optional Altitude in km to use for converting the subsolar point from geographic to magnetic coordinates. A high altitude is used to ensure the subsolar point is mapped to high latitudes, which prevents the South-Atlantic Anomaly (SAA) from influencing the MLT. Returns ======= mlon : ndarray or float Magnetic longitude [0, 360) (apex and quasi-dipole longitude are always equal) Notes ===== To compute the magnetic longitude, we find the apex longitude of the subsolar point at the given time. Then the magnetic longitude of the given point will be computed from the separation in magnetic local time from this point (1 hour = 15 degrees).
(module (function_definition (function_name_flatten_dir_tree) function_name_flatten_dir_tree (parameters (identifier_self) identifier_self (identifier_tree) identifier_tree )parameters (block (expression_statement (assignment (identifier_result) identifier_result (dictionary )dictionary )assignment )expression_statement (function_definition (function_name_helper) function_name_helper (parameters (identifier_tree) identifier_tree (default_parameter (identifier_leading_path) identifier_leading_path (string_'') string_'' )default_parameter )parameters (block (expression_statement (assignment (identifier_dirs) identifier_dirs (subscript (identifier_tree) identifier_tree (string_'dirs') string_'dirs' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_files) identifier_files (subscript (identifier_tree) identifier_tree (string_'files') string_'files' )subscript )assignment )expression_statement (for_statement (pattern_list (identifier_name) identifier_name (identifier_file_info) identifier_file_info )pattern_list (call (attribute (identifier_files) identifier_files (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (expression_statement (assignment (subscript (identifier_file_info) identifier_file_info (string_'path') string_'path' )subscript (binary_operator (binary_operator (identifier_leading_path) identifier_leading_path (string_'/') string_'/' )binary_operator (identifier_name) identifier_name )binary_operator )assignment )expression_statement (expression_statement (assignment (subscript (identifier_result) identifier_result (subscript (identifier_file_info) identifier_file_info (string_'path') string_'path' )subscript )subscript (identifier_file_info) identifier_file_info )assignment )expression_statement )block )for_statement (for_statement (pattern_list (identifier_name) identifier_name (identifier_contents) identifier_contents )pattern_list (call (attribute (identifier_dirs) identifier_dirs (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (expression_statement (call (identifier_helper) identifier_helper (argument_list (identifier_contents) identifier_contents (binary_operator (binary_operator (identifier_leading_path) identifier_leading_path (string_'/') string_'/' )binary_operator (identifier_name) identifier_name )binary_operator )argument_list )call )expression_statement )block )for_statement )block )function_definition (expression_statement (call (identifier_helper) identifier_helper (argument_list (identifier_tree) identifier_tree )argument_list )call )expression_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Convert a file tree back into a flat dict
(module (function_definition (function_name_load_weights) function_name_load_weights (parameters (identifier_self) identifier_self )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_network_weights_loader) identifier_network_weights_loader )attribute (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_network_weights) identifier_network_weights )attribute (call (attribute (identifier_self) identifier_self (identifier_network_weights_loader) identifier_network_weights_loader )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_network_weights_loader) identifier_network_weights_loader )attribute (None) None )assignment )expression_statement )block )if_statement )block )function_definition )module
Load weights by evaluating self.network_weights_loader, if needed. After calling this, self.network_weights_loader will be None and self.network_weights will be the weights list, if available.
(module (function_definition (function_name_get_serializer) function_name_get_serializer (parameters (identifier_self) identifier_self (identifier_node) identifier_node )parameters (block (return_statement (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (string_'serializers') string_'serializers' )subscript (identifier_get) identifier_get )attribute (argument_list (call (identifier_type) identifier_type (argument_list (identifier_node) identifier_node )argument_list )call (None) None )argument_list )call )return_statement (if_statement (comparison_operator (call (identifier_type) identifier_type (argument_list (identifier_node) identifier_node )argument_list )call (subscript (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (string_'serializers') string_'serializers' )subscript )comparison_operator (block (return_statement (subscript (subscript (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (string_'serializers') string_'serializers' )subscript (call (identifier_type) identifier_type (argument_list (identifier_node) identifier_node )argument_list )call )subscript )return_statement )block )if_statement (return_statement (None) None )return_statement )block )function_definition )module
Returns serializer for specific element. :Args: - node (:class:`ooxml.doc.Element`): Element object :Returns: Returns reference to a function which will be used for serialization.
(module (function_definition (function_name_make_initial_frame_chooser) function_name_make_initial_frame_chooser (parameters (identifier_real_env) identifier_real_env (identifier_frame_stack_size) identifier_frame_stack_size (identifier_simulation_random_starts) identifier_simulation_random_starts (identifier_simulation_flip_first_random_for_beginning) identifier_simulation_flip_first_random_for_beginning (default_parameter (identifier_split) identifier_split (attribute (attribute (attribute (identifier_tf) identifier_tf (identifier_estimator) identifier_estimator )attribute (identifier_ModeKeys) identifier_ModeKeys )attribute (identifier_TRAIN) identifier_TRAIN )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_initial_frame_rollouts) identifier_initial_frame_rollouts (call (attribute (identifier_real_env) identifier_real_env (identifier_current_epoch_rollouts) identifier_current_epoch_rollouts )attribute (argument_list (keyword_argument (identifier_split) identifier_split (identifier_split) identifier_split )keyword_argument (keyword_argument (identifier_minimal_rollout_frames) identifier_minimal_rollout_frames (identifier_frame_stack_size) identifier_frame_stack_size )keyword_argument )argument_list )call )assignment )expression_statement (function_definition (function_name_initial_frame_chooser) function_name_initial_frame_chooser (parameters (identifier_batch_size) identifier_batch_size )parameters (block (expression_statement (assignment (identifier_deterministic_initial_frames) identifier_deterministic_initial_frames (line_continuation_\) line_continuation_\ (subscript (subscript (identifier_initial_frame_rollouts) identifier_initial_frame_rollouts (integer_0) integer_0 )subscript (slice (colon) colon (identifier_frame_stack_size) identifier_frame_stack_size )slice )subscript )assignment )expression_statement (if_statement (not_operator (identifier_simulation_random_starts) identifier_simulation_random_starts )not_operator (block (expression_statement (assignment (identifier_initial_frames) identifier_initial_frames (binary_operator (list (identifier_deterministic_initial_frames) identifier_deterministic_initial_frames )list (identifier_batch_size) identifier_batch_size )binary_operator )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_initial_frames) identifier_initial_frames (call (identifier_random_rollout_subsequences) identifier_random_rollout_subsequences (argument_list (identifier_initial_frame_rollouts) identifier_initial_frame_rollouts (identifier_batch_size) identifier_batch_size (identifier_frame_stack_size) identifier_frame_stack_size )argument_list )call )assignment )expression_statement (if_statement (identifier_simulation_flip_first_random_for_beginning) identifier_simulation_flip_first_random_for_beginning (block (expression_statement (assignment (subscript (identifier_initial_frames) identifier_initial_frames (integer_0) integer_0 )subscript (identifier_deterministic_initial_frames) identifier_deterministic_initial_frames )assignment )expression_statement )block )if_statement )block )else_clause )if_statement (return_statement (call (attribute (identifier_np) identifier_np (identifier_stack) identifier_stack )attribute (argument_list (list_comprehension (list_comprehension (call (attribute (attribute (identifier_frame) identifier_frame (identifier_observation) identifier_observation )attribute (identifier_decode) identifier_decode )attribute (argument_list )argument_list )call (for_in_clause (identifier_frame) identifier_frame (identifier_initial_frame_stack) identifier_initial_frame_stack )for_in_clause )list_comprehension (for_in_clause (identifier_initial_frame_stack) identifier_initial_frame_stack (identifier_initial_frames) identifier_initial_frames )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition (return_statement (identifier_initial_frame_chooser) identifier_initial_frame_chooser )return_statement )block )function_definition )module
Make frame chooser. Args: real_env: T2TEnv to take initial frames from. frame_stack_size (int): Number of consecutive frames to extract. simulation_random_starts (bool): Whether to choose frames at random. simulation_flip_first_random_for_beginning (bool): Whether to flip the first frame stack in every batch for the frames at the beginning. split (tf.estimator.ModeKeys or None): Data split to take the frames from, None means use all frames. Returns: Function batch_size -> initial_frames.
(module (function_definition (function_name__read_from_sql) function_name__read_from_sql (parameters (identifier_self) identifier_self (identifier_request) identifier_request (identifier_db_name) identifier_db_name )parameters (block (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_contextlib) identifier_contextlib (identifier_closing) identifier_closing )attribute (argument_list (call (attribute (identifier_sqlite3) identifier_sqlite3 (identifier_connect) identifier_connect )attribute (argument_list (call (attribute (string_"{}.db") string_"{}.db" (identifier_format) identifier_format )attribute (argument_list (identifier_db_name) identifier_db_name )argument_list )call )argument_list )call )argument_list )call (as_pattern_target (identifier_con) identifier_con )as_pattern_target )as_pattern )with_item )with_clause (block (return_statement (call (attribute (identifier_sql) identifier_sql (identifier_read_sql) identifier_read_sql )attribute (argument_list (keyword_argument (identifier_sql) identifier_sql (identifier_request) identifier_request )keyword_argument (keyword_argument (identifier_con) identifier_con (identifier_con) identifier_con )keyword_argument )argument_list )call )return_statement )block )with_statement )block )function_definition )module
Using the contextlib, I hope to close the connection to database when not in use
(module (function_definition (function_name_protect) function_name_protect (parameters (identifier_self) identifier_self (default_parameter (identifier_password) identifier_password (None) None )default_parameter (default_parameter (identifier_read_protect) identifier_read_protect (False) False )default_parameter (default_parameter (identifier_protect_from) identifier_protect_from (integer_0) integer_0 )default_parameter )parameters (block (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_FelicaLite) identifier_FelicaLite (identifier_self) identifier_self )argument_list )call (identifier_protect) identifier_protect )attribute (argument_list (identifier_password) identifier_password (identifier_read_protect) identifier_read_protect (identifier_protect_from) identifier_protect_from )argument_list )call )return_statement )block )function_definition )module
Protect a FeliCa Lite Tag. A FeliCa Lite Tag can be provisioned with a custom password (or the default manufacturer key if the password is an empty string or bytearray) to ensure that data retrieved by future read operations, after authentication, is genuine. Read protection is not supported. A non-empty *password* must provide at least 128 bit key material, in other words it must be a string or bytearray of length 16 or more. The memory unit for the value of *protect_from* is 16 byte, thus with ``protect_from=2`` bytes 0 to 31 are not protected. If *protect_from* is zero (the default value) and the Tag has valid NDEF management data, the NDEF RW Flag is set to read only.
(module (function_definition (function_name_ParseApplicationUsageRow) function_name_ParseApplicationUsageRow (parameters (identifier_self) identifier_self (identifier_parser_mediator) identifier_parser_mediator (identifier_query) identifier_query (identifier_row) identifier_row (dictionary_splat_pattern (identifier_unused_kwargs) identifier_unused_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_query_hash) identifier_query_hash (call (identifier_hash) identifier_hash (argument_list (identifier_query) identifier_query )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_application_name) identifier_application_name (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'event') string_'event' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_usage) identifier_usage (call (attribute (string_'Application {0:s}') string_'Application {0:s}' (identifier_format) identifier_format )attribute (argument_list (identifier_application_name) identifier_application_name )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_event_data) identifier_event_data (call (identifier_MacOSApplicationUsageEventData) identifier_MacOSApplicationUsageEventData (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_application) identifier_application )attribute (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'app_path') string_'app_path' )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_app_version) identifier_app_version )attribute (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'app_version') string_'app_version' )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_bundle_id) identifier_bundle_id )attribute (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'bundle_id') string_'bundle_id' )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_count) identifier_count )attribute (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'number_times') string_'number_times' )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_query) identifier_query )attribute (identifier_query) identifier_query )assignment )expression_statement (expression_statement (assignment (identifier_timestamp) identifier_timestamp (call (attribute (identifier_self) identifier_self (identifier__GetRowValue) identifier__GetRowValue )attribute (argument_list (identifier_query_hash) identifier_query_hash (identifier_row) identifier_row (string_'last_time') string_'last_time' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_date_time) identifier_date_time (call (attribute (identifier_dfdatetime_posix_time) identifier_dfdatetime_posix_time (identifier_PosixTime) identifier_PosixTime )attribute (argument_list (keyword_argument (identifier_timestamp) identifier_timestamp (identifier_timestamp) identifier_timestamp )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_event) identifier_event (call (attribute (identifier_time_events) identifier_time_events (identifier_DateTimeValuesEvent) identifier_DateTimeValuesEvent )attribute (argument_list (identifier_date_time) identifier_date_time (identifier_usage) identifier_usage )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_parser_mediator) identifier_parser_mediator (identifier_ProduceEventWithEventData) identifier_ProduceEventWithEventData )attribute (argument_list (identifier_event) identifier_event (identifier_event_data) identifier_event_data )argument_list )call )expression_statement )block )function_definition )module
Parses an application usage row. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. query (str): query that created the row. row (sqlite3.Row): row.
(module (function_definition (function_name_get_max_dim) function_name_get_max_dim (parameters (identifier_self) identifier_self (identifier_obj) identifier_obj )parameters (block (try_statement (block (expression_statement (call (identifier_iter) identifier_iter (argument_list (identifier_obj) identifier_obj )argument_list )call )expression_statement )block (except_clause (identifier_TypeError) identifier_TypeError (block (return_statement (integer_0) integer_0 )return_statement )block )except_clause )try_statement (try_statement (block (for_statement (identifier_o) identifier_o (identifier_obj) identifier_obj (block (expression_statement (call (identifier_iter) identifier_iter (argument_list (identifier_o) identifier_o )argument_list )call )expression_statement (break_statement )break_statement )block )for_statement )block (except_clause (identifier_TypeError) identifier_TypeError (block (return_statement (integer_1) integer_1 )return_statement )block )except_clause )try_statement (return_statement (integer_2) integer_2 )return_statement )block )function_definition )module
Returns maximum dimensionality over which obj is iterable <= 2
(module (function_definition (function_name_from_isodatetime) function_name_from_isodatetime (parameters (identifier_value) identifier_value (default_parameter (identifier_strict) identifier_strict (False) False )default_parameter )parameters (block (if_statement (boolean_operator (identifier_value) identifier_value (identifier_strict) identifier_strict )boolean_operator (block (return_statement (attribute (call (attribute (identifier_arrow) identifier_arrow (identifier_get) identifier_get )attribute (argument_list (identifier_value) identifier_value )argument_list )call (identifier_datetime) identifier_datetime )attribute )return_statement )block )if_statement )block )function_definition )module
Convert an ISO formatted datetime into a Date object. :param value: The ISO formatted datetime. :param strict: If value is ``None``, then if strict is ``True`` it returns the Date object of today, otherwise it returns ``None``. (Default: ``False``) :returns: The Date object or ``None``.
(module (function_definition (function_name_from_gene_ids_and_names) function_name_from_gene_ids_and_names (parameters (identifier_cls) identifier_cls (typed_parameter (identifier_gene_names) identifier_gene_names (type (generic_type (identifier_Dict) identifier_Dict (type_parameter (type (identifier_str) identifier_str )type (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter )parameters (block (expression_statement (assignment (identifier_genes) identifier_genes (list_comprehension (call (identifier_ExpGene) identifier_ExpGene (argument_list (identifier_id_) identifier_id_ (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument )argument_list )call (for_in_clause (pattern_list (identifier_id_) identifier_id_ (identifier_name) identifier_name )pattern_list (call (attribute (identifier_gene_names) identifier_gene_names (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (call (attribute (identifier_cls) identifier_cls (identifier_from_genes) identifier_from_genes )attribute (argument_list (identifier_genes) identifier_genes )argument_list )call )return_statement )block )function_definition )module
Initialize instance from gene IDs and names.
(module (function_definition (function_name_put) function_name_put (parameters (identifier_self) identifier_self (identifier_endpoint) identifier_endpoint (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_update) identifier_update )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_kwargs) identifier_kwargs )attribute (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (if_statement (comparison_operator (string_"data") string_"data" (identifier_kwargs) identifier_kwargs )comparison_operator (block (expression_statement (call (attribute (subscript (identifier_kwargs) identifier_kwargs (string_"headers") string_"headers" )subscript (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_"Content-Type") string_"Content-Type" (string_"application/json;charset=UTF-8") string_"application/json;charset=UTF-8" )pair )dictionary )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_requests) identifier_requests (identifier_put) identifier_put )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier_make_url) identifier_make_url )attribute (argument_list (identifier_endpoint) identifier_endpoint )argument_list )call (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (call (identifier__decode_response) identifier__decode_response (argument_list (identifier_response) identifier_response )argument_list )call )return_statement )block )function_definition )module
Send HTTP PUT to the endpoint. :arg str endpoint: The endpoint to send to. :returns: JSON decoded result. :raises: requests.RequestException on timeout or connection error.
(module (function_definition (function_name_parse_task_rawcommand) function_name_parse_task_rawcommand (parameters (identifier_self) identifier_self (identifier_rawcommand_subAST) identifier_rawcommand_subAST )parameters (block (expression_statement (assignment (identifier_command_array) identifier_command_array (list )list )assignment )expression_statement (for_statement (identifier_code_snippet) identifier_code_snippet (subscript (attribute (identifier_rawcommand_subAST) identifier_rawcommand_subAST (identifier_attributes) identifier_attributes )attribute (string_"parts") string_"parts" )subscript (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_code_snippet) identifier_code_snippet (attribute (identifier_wdl_parser) identifier_wdl_parser (identifier_Terminal) identifier_Terminal )attribute )argument_list )call (block (expression_statement (assignment (identifier_command_var) identifier_command_var (string_"r") string_"r" )assignment )expression_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_code_snippet) identifier_code_snippet (attribute (identifier_wdl_parser) identifier_wdl_parser (identifier_Ast) identifier_Ast )attribute )argument_list )call (block (if_statement (comparison_operator (attribute (identifier_code_snippet) identifier_code_snippet (identifier_name) identifier_name )attribute (string_'CommandParameter') string_'CommandParameter' )comparison_operator (block (expression_statement (assignment (identifier_code_expr) identifier_code_expr (call (attribute (identifier_self) identifier_self (identifier_parse_declaration_expressn) identifier_parse_declaration_expressn )attribute (argument_list (call (attribute (identifier_code_snippet) identifier_code_snippet (identifier_attr) identifier_attr )attribute (argument_list (string_'expr') string_'expr' )argument_list )call (keyword_argument (identifier_es) identifier_es (string_'') string_'' )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_code_attributes) identifier_code_attributes (call (attribute (identifier_self) identifier_self (identifier_parse_task_rawcommand_attributes) identifier_parse_task_rawcommand_attributes )attribute (argument_list (call (attribute (identifier_code_snippet) identifier_code_snippet (identifier_attr) identifier_attr )attribute (argument_list (string_'attributes') string_'attributes' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_command_var) identifier_command_var (call (attribute (identifier_self) identifier_self (identifier_modify_cmd_expr_w_attributes) identifier_modify_cmd_expr_w_attributes )attribute (argument_list (identifier_code_expr) identifier_code_expr (identifier_code_attributes) identifier_code_attributes )argument_list )call )assignment )expression_statement )block )if_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_code_snippet) identifier_code_snippet (attribute (identifier_wdl_parser) identifier_wdl_parser (identifier_AstList) identifier_AstList )attribute )argument_list )call (block (raise_statement (identifier_NotImplementedError) identifier_NotImplementedError )raise_statement )block )if_statement (expression_statement (call (attribute (identifier_command_array) identifier_command_array (identifier_append) identifier_append )attribute (argument_list (identifier_command_var) identifier_command_var )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_command_array) identifier_command_array )return_statement )block )function_definition )module
Parses the rawcommand section of the WDL task AST subtree. Task "rawcommands" are divided into many parts. There are 2 types of parts: normal strings, & variables that can serve as changeable inputs. The following example command: 'echo ${variable1} ${variable2} > output_file.txt' Has 5 parts: Normal String: 'echo ' Variable Input: variable1 Normal String: ' ' Variable Input: variable2 Normal String: ' > output_file.txt' Variables can also have additional conditions, like 'sep', which is like the python ''.join() function and in WDL looks like: ${sep=" -V " GVCFs} and would be translated as: ' -V '.join(GVCFs). :param rawcommand_subAST: A subAST representing some bash command. :return: A list=[] of tuples=() representing the parts of the command: e.g. [(command_var, command_type, additional_conditions_list), ...] Where: command_var = 'GVCFs' command_type = 'variable' command_actions = {'sep': ' -V '}
(module (function_definition (function_name_process_message_notification) function_name_process_message_notification (parameters (identifier_request) identifier_request (identifier_messages_path) identifier_messages_path )parameters (block (if_statement (not_operator (identifier_messages_path) identifier_messages_path )not_operator (block (return_statement )return_statement )block )if_statement (global_statement (identifier__MESSAGES_CACHE) identifier__MESSAGES_CACHE )global_statement (global_statement (identifier__MESSAGES_MTIME) identifier__MESSAGES_MTIME )global_statement (if_statement (parenthesized_expression (boolean_operator (comparison_operator (identifier__MESSAGES_CACHE) identifier__MESSAGES_CACHE (None) None )comparison_operator (comparison_operator (identifier__MESSAGES_MTIME) identifier__MESSAGES_MTIME (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_getmtime) identifier_getmtime )attribute (argument_list (identifier_messages_path) identifier_messages_path )argument_list )call )comparison_operator )boolean_operator )parenthesized_expression (block (expression_statement (assignment (identifier__MESSAGES_CACHE) identifier__MESSAGES_CACHE (call (identifier__get_processed_messages) identifier__get_processed_messages (argument_list (identifier_messages_path) identifier_messages_path )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier__MESSAGES_MTIME) identifier__MESSAGES_MTIME (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_getmtime) identifier_getmtime )attribute (argument_list (identifier_messages_path) identifier_messages_path )argument_list )call )assignment )expression_statement )block )if_statement (for_statement (identifier_msg) identifier_msg (identifier__MESSAGES_CACHE) identifier__MESSAGES_CACHE (block (expression_statement (call (attribute (identifier_msg) identifier_msg (identifier_send_message) identifier_send_message )attribute (argument_list (identifier_request) identifier_request )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Process all the msg file found in the message directory
(module (function_definition (function_name_getHeader) function_name_getHeader (parameters (identifier_self) identifier_self )parameters (block (return_statement (dictionary (pair (string_"technician") string_"technician" (call (attribute (identifier_self) identifier_self (identifier_getTechnician) identifier_getTechnician )attribute (argument_list )argument_list )call )pair (pair (string_"recording_additional") string_"recording_additional" (call (attribute (identifier_self) identifier_self (identifier_getRecordingAdditional) identifier_getRecordingAdditional )attribute (argument_list )argument_list )call )pair (pair (string_"patientname") string_"patientname" (call (attribute (identifier_self) identifier_self (identifier_getPatientName) identifier_getPatientName )attribute (argument_list )argument_list )call )pair (pair (string_"patient_additional") string_"patient_additional" (call (attribute (identifier_self) identifier_self (identifier_getPatientAdditional) identifier_getPatientAdditional )attribute (argument_list )argument_list )call )pair (pair (string_"patientcode") string_"patientcode" (call (attribute (identifier_self) identifier_self (identifier_getPatientCode) identifier_getPatientCode )attribute (argument_list )argument_list )call )pair (pair (string_"equipment") string_"equipment" (call (attribute (identifier_self) identifier_self (identifier_getEquipment) identifier_getEquipment )attribute (argument_list )argument_list )call )pair (pair (string_"admincode") string_"admincode" (call (attribute (identifier_self) identifier_self (identifier_getAdmincode) identifier_getAdmincode )attribute (argument_list )argument_list )call )pair (pair (string_"gender") string_"gender" (call (attribute (identifier_self) identifier_self (identifier_getGender) identifier_getGender )attribute (argument_list )argument_list )call )pair (pair (string_"startdate") string_"startdate" (call (attribute (identifier_self) identifier_self (identifier_getStartdatetime) identifier_getStartdatetime )attribute (argument_list )argument_list )call )pair (pair (string_"birthdate") string_"birthdate" (call (attribute (identifier_self) identifier_self (identifier_getBirthdate) identifier_getBirthdate )attribute (argument_list )argument_list )call )pair )dictionary )return_statement )block )function_definition )module
Returns the file header as dict Parameters ---------- None
(module (function_definition (function_name_dot) function_name_dot (parameters (identifier_self) identifier_self (identifier_w) identifier_w )parameters (block (return_statement (call (identifier_sum) identifier_sum (argument_list (list_comprehension (binary_operator (identifier_x) identifier_x (identifier_y) identifier_y )binary_operator (for_in_clause (pattern_list (identifier_x) identifier_x (identifier_y) identifier_y )pattern_list (call (identifier_zip) identifier_zip (argument_list (identifier_self) identifier_self (identifier_w) identifier_w )argument_list )call )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
Return the dotproduct between self and another vector.
(module (function_definition (function_name_open_handle) function_name_open_handle (parameters (identifier_self) identifier_self (default_parameter (identifier_dwDesiredAccess) identifier_dwDesiredAccess (attribute (identifier_win32) identifier_win32 (identifier_THREAD_ALL_ACCESS) identifier_THREAD_ALL_ACCESS )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_hThread) identifier_hThread (call (attribute (identifier_win32) identifier_win32 (identifier_OpenThread) identifier_OpenThread )attribute (argument_list (identifier_dwDesiredAccess) identifier_dwDesiredAccess (attribute (identifier_win32) identifier_win32 (identifier_FALSE) identifier_FALSE )attribute (attribute (identifier_self) identifier_self (identifier_dwThreadId) identifier_dwThreadId )attribute )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (identifier_hasattr) identifier_hasattr (argument_list (attribute (identifier_self) identifier_self (identifier_hThread) identifier_hThread )attribute (string_'__del__') string_'__del__' )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_close_handle) identifier_close_handle )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_hThread) identifier_hThread )attribute (identifier_hThread) identifier_hThread )assignment )expression_statement )block )function_definition )module
Opens a new handle to the thread, closing the previous one. The new handle is stored in the L{hThread} property. @warn: Normally you should call L{get_handle} instead, since it's much "smarter" and tries to reuse handles and merge access rights. @type dwDesiredAccess: int @param dwDesiredAccess: Desired access rights. Defaults to L{win32.THREAD_ALL_ACCESS}. See: U{http://msdn.microsoft.com/en-us/library/windows/desktop/ms686769(v=vs.85).aspx} @raise WindowsError: It's not possible to open a handle to the thread with the requested access rights. This tipically happens because the target thread belongs to system process and the debugger is not runnning with administrative rights.
(module (function_definition (function_name_read_10x_h5) function_name_read_10x_h5 (parameters (identifier_filename) identifier_filename (default_parameter (identifier_genome) identifier_genome (None) None )default_parameter (default_parameter (identifier_gex_only) identifier_gex_only (True) True )default_parameter )parameters (type (identifier_AnnData) identifier_AnnData )type (block (expression_statement (call (attribute (identifier_logg) identifier_logg (identifier_info) identifier_info )attribute (argument_list (string_'reading') string_'reading' (identifier_filename) identifier_filename (keyword_argument (identifier_r) identifier_r (True) True )keyword_argument (keyword_argument (identifier_end) identifier_end (string_' ') string_' ' )keyword_argument )argument_list )call )expression_statement (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_tables) identifier_tables (identifier_open_file) identifier_open_file )attribute (argument_list (call (identifier_str) identifier_str (argument_list (identifier_filename) identifier_filename )argument_list )call (string_'r') string_'r' )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_v3) identifier_v3 (comparison_operator (string_'/matrix') string_'/matrix' (identifier_f) identifier_f )comparison_operator )assignment )expression_statement )block )with_statement (if_statement (identifier_v3) identifier_v3 (block (expression_statement (assignment (identifier_adata) identifier_adata (call (identifier__read_v3_10x_h5) identifier__read_v3_10x_h5 (argument_list (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (identifier_genome) identifier_genome (block (if_statement (comparison_operator (identifier_genome) identifier_genome (attribute (subscript (attribute (identifier_adata) identifier_adata (identifier_var) identifier_var )attribute (string_'genome') string_'genome' )subscript (identifier_values) identifier_values )attribute )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (concatenated_string (string_"Could not find data corresponding to genome '{genome}' in '{filename}'. ") string_"Could not find data corresponding to genome '{genome}' in '{filename}'. " (string_"Available genomes are: {avail}.") string_"Available genomes are: {avail}." )concatenated_string (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_genome) identifier_genome (identifier_genome) identifier_genome )keyword_argument (keyword_argument (identifier_filename) identifier_filename (identifier_filename) identifier_filename )keyword_argument (keyword_argument (identifier_avail) identifier_avail (call (identifier_list) identifier_list (argument_list (call (attribute (subscript (attribute (identifier_adata) identifier_adata (identifier_var) identifier_var )attribute (string_"genome") string_"genome" )subscript (identifier_unique) identifier_unique )attribute (argument_list )argument_list )call )argument_list )call )keyword_argument )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_adata) identifier_adata (subscript (identifier_adata) identifier_adata (slice (colon) colon )slice (call (identifier_list) identifier_list (argument_list (call (identifier_map) identifier_map (argument_list (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (comparison_operator (identifier_x) identifier_x (call (identifier_str) identifier_str (argument_list (identifier_genome) identifier_genome )argument_list )call )comparison_operator )lambda (subscript (attribute (identifier_adata) identifier_adata (identifier_var) identifier_var )attribute (string_'genome') string_'genome' )subscript )argument_list )call )argument_list )call )subscript )assignment )expression_statement )block )if_statement (if_statement (identifier_gex_only) identifier_gex_only (block (expression_statement (assignment (identifier_adata) identifier_adata (subscript (identifier_adata) identifier_adata (slice (colon) colon )slice (call (identifier_list) identifier_list (argument_list (call (identifier_map) identifier_map (argument_list (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (comparison_operator (identifier_x) identifier_x (string_'Gene Expression') string_'Gene Expression' )comparison_operator )lambda (subscript (attribute (identifier_adata) identifier_adata (identifier_var) identifier_var )attribute (string_'feature_types') string_'feature_types' )subscript )argument_list )call )argument_list )call )subscript )assignment )expression_statement )block )if_statement (return_statement (identifier_adata) identifier_adata )return_statement )block (else_clause (block (return_statement (call (identifier__read_legacy_10x_h5) identifier__read_legacy_10x_h5 (argument_list (identifier_filename) identifier_filename (keyword_argument (identifier_genome) identifier_genome (identifier_genome) identifier_genome )keyword_argument )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Read 10x-Genomics-formatted hdf5 file. Parameters ---------- filename : `str` | :class:`~pathlib.Path` Filename. genome : `str`, optional (default: ``None``) Filter expression to this genes within this genome. For legacy 10x h5 files, this must be provided if the data contains more than one genome. gex_only : `bool`, optional (default: `True`) Only keep 'Gene Expression' data and ignore other feature types, e.g. 'Antibody Capture', 'CRISPR Guide Capture', or 'Custom' Returns ------- Annotated data matrix, where obsevations/cells are named by their barcode and variables/genes by gene name. The data matrix is stored in `adata.X`, cell names in `adata.obs_names` and gene names in `adata.var_names`. The gene IDs are stored in `adata.var['gene_ids']`. The feature types are stored in `adata.var['feature_types']`
(module (function_definition (function_name_getsubtables) function_name_getsubtables (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_keyset) identifier_keyset (call (attribute (identifier_self) identifier_self (identifier_getkeywords) identifier_getkeywords )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_names) identifier_names (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (attribute (identifier_keyset) identifier_keyset (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (if_statement (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (identifier_str) identifier_str )argument_list )call (comparison_operator (call (attribute (identifier_value) identifier_value (identifier_find) identifier_find )attribute (argument_list (string_'Table: ') string_'Table: ' )argument_list )call (integer_0) integer_0 )comparison_operator )boolean_operator (block (expression_statement (call (attribute (identifier_names) identifier_names (identifier_append) identifier_append )attribute (argument_list (call (identifier__do_remove_prefix) identifier__do_remove_prefix (argument_list (identifier_value) identifier_value )argument_list )call )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_names) identifier_names )return_statement )block )function_definition )module
Get the names of all subtables.
(module (function_definition (function_name_tabSeparatedSummary) function_name_tabSeparatedSummary (parameters (identifier_self) identifier_self (default_parameter (identifier_sortOn) identifier_sortOn (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_result) identifier_result (list )list )assignment )expression_statement (for_statement (identifier_titleSummary) identifier_titleSummary (call (attribute (identifier_self) identifier_self (identifier_summary) identifier_summary )attribute (argument_list (identifier_sortOn) identifier_sortOn )argument_list )call (block (expression_statement (call (attribute (identifier_result) identifier_result (identifier_append) identifier_append )attribute (argument_list (binary_operator (call (attribute (string_'\t') string_'\t' (identifier_join) identifier_join )attribute (argument_list (list (string_'%(coverage)f') string_'%(coverage)f' (string_'%(medianScore)f') string_'%(medianScore)f' (string_'%(bestScore)f') string_'%(bestScore)f' (string_'%(readCount)d') string_'%(readCount)d' (string_'%(hspCount)d') string_'%(hspCount)d' (string_'%(subjectLength)d') string_'%(subjectLength)d' (string_'%(subjectTitle)s') string_'%(subjectTitle)s' )list )argument_list )call (identifier_titleSummary) identifier_titleSummary )binary_operator )argument_list )call )expression_statement )block )for_statement (return_statement (call (attribute (string_'\n') string_'\n' (identifier_join) identifier_join )attribute (argument_list (identifier_result) identifier_result )argument_list )call )return_statement )block )function_definition )module
Summarize all the alignments for this title as multi-line string with TAB-separated values on each line. @param sortOn: A C{str} attribute to sort titles on. One of 'length', 'maxScore', 'medianScore', 'readCount', or 'title'. @raise ValueError: If an unknown C{sortOn} value is given. @return: A newline-separated C{str}, each line with a summary of a title. Each summary line is TAB-separated.
(module (function_definition (function_name_get_object) function_name_get_object (parameters (identifier_self) identifier_self (identifier_request) identifier_request (identifier_object_id) identifier_object_id (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_obj) identifier_obj (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_TranslatableAdmin) identifier_TranslatableAdmin (identifier_self) identifier_self )argument_list )call (identifier_get_object) identifier_get_object )attribute (argument_list (identifier_request) identifier_request (identifier_object_id) identifier_object_id (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_obj) identifier_obj (None) None )comparison_operator (call (attribute (identifier_self) identifier_self (identifier__has_translatable_model) identifier__has_translatable_model )attribute (argument_list )argument_list )call )boolean_operator (block (expression_statement (call (attribute (identifier_obj) identifier_obj (identifier_set_current_language) identifier_set_current_language )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__language) identifier__language )attribute (argument_list (identifier_request) identifier_request (identifier_obj) identifier_obj )argument_list )call (keyword_argument (identifier_initialize) identifier_initialize (True) True )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_obj) identifier_obj )return_statement )block )function_definition )module
Make sure the object is fetched in the correct language.
(module (function_definition (function_name__ParseLastRunTime) function_name__ParseLastRunTime (parameters (identifier_self) identifier_self (identifier_parser_mediator) identifier_parser_mediator (identifier_fixed_length_section) identifier_fixed_length_section )parameters (block (expression_statement (assignment (identifier_systemtime_struct) identifier_systemtime_struct (attribute (identifier_fixed_length_section) identifier_fixed_length_section (identifier_last_run_time) identifier_last_run_time )attribute )assignment )expression_statement (expression_statement (assignment (identifier_system_time_tuple) identifier_system_time_tuple (tuple (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_year) identifier_year )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_month) identifier_month )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_weekday) identifier_weekday )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_day_of_month) identifier_day_of_month )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_hours) identifier_hours )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_minutes) identifier_minutes )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_seconds) identifier_seconds )attribute (attribute (identifier_systemtime_struct) identifier_systemtime_struct (identifier_milliseconds) identifier_milliseconds )attribute )tuple )assignment )expression_statement (expression_statement (assignment (identifier_date_time) identifier_date_time (None) None )assignment )expression_statement (if_statement (comparison_operator (identifier_system_time_tuple) identifier_system_time_tuple (attribute (identifier_self) identifier_self (identifier__EMPTY_SYSTEM_TIME_TUPLE) identifier__EMPTY_SYSTEM_TIME_TUPLE )attribute )comparison_operator (block (try_statement (block (expression_statement (assignment (identifier_date_time) identifier_date_time (call (attribute (identifier_dfdatetime_systemtime) identifier_dfdatetime_systemtime (identifier_Systemtime) identifier_Systemtime )attribute (argument_list (keyword_argument (identifier_system_time_tuple) identifier_system_time_tuple (identifier_system_time_tuple) identifier_system_time_tuple )keyword_argument )argument_list )call )assignment )expression_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (expression_statement (call (attribute (identifier_parser_mediator) identifier_parser_mediator (identifier_ProduceExtractionWarning) identifier_ProduceExtractionWarning )attribute (argument_list (call (attribute (string_'invalid last run time: {0!s}') string_'invalid last run time: {0!s}' (identifier_format) identifier_format )attribute (argument_list (identifier_system_time_tuple) identifier_system_time_tuple )argument_list )call )argument_list )call )expression_statement )block )except_clause )try_statement )block )if_statement (return_statement (identifier_date_time) identifier_date_time )return_statement )block )function_definition )module
Parses the last run time from a fixed-length data section. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. fixed_length_section (job_fixed_length_data_section): a Windows Scheduled Task job fixed-length data section. Returns: dfdatetime.DateTimeValues: last run date and time or None if not available.
(module (function_definition (function_name_default) function_name_default (parameters (identifier_self) identifier_self (identifier_node) identifier_node )parameters (block (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_node) identifier_node (string_'linestart') string_'linestart' )argument_list )call (block (if_statement (attribute (identifier_node) identifier_node (identifier_linestart) identifier_linestart )attribute (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_source_linemap) identifier_source_linemap )attribute (attribute (identifier_self) identifier_self (identifier_current_line_number) identifier_current_line_number )attribute )subscript (attribute (identifier_node) identifier_node (identifier_linestart) identifier_linestart )attribute )assignment )expression_statement )block )if_statement )block )if_statement (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_LineMapWalker) identifier_LineMapWalker (identifier_self) identifier_self )argument_list )call (identifier_default) identifier_default )attribute (argument_list (identifier_node) identifier_node )argument_list )call )return_statement )block )function_definition )module
Augment write default routine to record line number changes
(module (function_definition (function_name_get_details) function_name_get_details (parameters (identifier_cls) identifier_cls (identifier_node) identifier_node (default_parameter (identifier_as_model) identifier_as_model (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_rest_job) identifier_rest_job (call (identifier_RestJob) identifier_RestJob (argument_list (keyword_argument (identifier_process_name) identifier_process_name (attribute (identifier_node) identifier_node (identifier_process_name) identifier_process_name )attribute )keyword_argument (keyword_argument (identifier_timeperiod) identifier_timeperiod (attribute (identifier_node) identifier_node (identifier_timeperiod) identifier_timeperiod )attribute )keyword_argument (keyword_argument (identifier_time_qualifier) identifier_time_qualifier (attribute (identifier_node) identifier_node (identifier_time_qualifier) identifier_time_qualifier )attribute )keyword_argument (keyword_argument (identifier_number_of_children) identifier_number_of_children (call (identifier_len) identifier_len (argument_list (attribute (identifier_node) identifier_node (identifier_children) identifier_children )attribute )argument_list )call )keyword_argument (keyword_argument (identifier_number_of_failures) identifier_number_of_failures (conditional_expression (string_'NA') string_'NA' (not_operator (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute )not_operator (attribute (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute (identifier_number_of_failures) identifier_number_of_failures )attribute )conditional_expression )keyword_argument (keyword_argument (identifier_state) identifier_state (conditional_expression (string_'NA') string_'NA' (not_operator (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute )not_operator (attribute (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute (identifier_state) identifier_state )attribute )conditional_expression )keyword_argument (keyword_argument (identifier_event_log) identifier_event_log (conditional_expression (list )list (not_operator (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute )not_operator (attribute (attribute (identifier_node) identifier_node (identifier_job_record) identifier_job_record )attribute (identifier_event_log) identifier_event_log )attribute )conditional_expression )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (identifier_as_model) identifier_as_model (block (return_statement (identifier_rest_job) identifier_rest_job )return_statement )block (else_clause (block (return_statement (attribute (identifier_rest_job) identifier_rest_job (identifier_document) identifier_document )attribute )return_statement )block )else_clause )if_statement )block )function_definition )module
method returns either RestJob instance or corresponding document, depending on the as_model argument
(module (function_definition (function_name_AddTableColumn) function_name_AddTableColumn (parameters (identifier_self) identifier_self (identifier_table) identifier_table (identifier_column) identifier_column )parameters (block (if_statement (comparison_operator (identifier_column) identifier_column (subscript (attribute (identifier_self) identifier_self (identifier__table_columns) identifier__table_columns )attribute (identifier_table) identifier_table )subscript )comparison_operator (block (expression_statement (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier__table_columns) identifier__table_columns )attribute (identifier_table) identifier_table )subscript (identifier_append) identifier_append )attribute (argument_list (identifier_column) identifier_column )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Add column to table if it is not already there.
(module (function_definition (function_name_update) function_name_update (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_con) identifier_con (attribute (attribute (attribute (identifier_self) identifier_self (identifier_subpars) identifier_subpars )attribute (identifier_pars) identifier_pars )attribute (identifier_control) identifier_control )attribute )assignment )expression_statement (expression_statement (call (identifier_self) identifier_self (argument_list (binary_operator (attribute (identifier_con) identifier_con (identifier_eqd1) identifier_eqd1 )attribute (attribute (identifier_con) identifier_con (identifier_tind) identifier_tind )attribute )binary_operator )argument_list )call )expression_statement )block )function_definition )module
Update |KD1| based on |EQD1| and |TInd|. >>> from hydpy.models.lland import * >>> parameterstep('1d') >>> eqd1(0.5) >>> tind.value = 10.0 >>> derived.kd1.update() >>> derived.kd1 kd1(5.0)
(module (function_definition (function_name_FetchCompletedRequests) function_name_FetchCompletedRequests (parameters (identifier_self) identifier_self (identifier_session_id) identifier_session_id (default_parameter (identifier_timestamp) identifier_timestamp (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_timestamp) identifier_timestamp (None) None )comparison_operator (block (expression_statement (assignment (identifier_timestamp) identifier_timestamp (tuple (integer_0) integer_0 (boolean_operator (attribute (identifier_self) identifier_self (identifier_frozen_timestamp) identifier_frozen_timestamp )attribute (call (attribute (attribute (identifier_rdfvalue) identifier_rdfvalue (identifier_RDFDatetime) identifier_RDFDatetime )attribute (identifier_Now) identifier_Now )attribute (argument_list )argument_list )call )boolean_operator )tuple )assignment )expression_statement )block )if_statement (for_statement (pattern_list (identifier_request) identifier_request (identifier_status) identifier_status )pattern_list (call (attribute (attribute (identifier_self) identifier_self (identifier_data_store) identifier_data_store )attribute (identifier_ReadCompletedRequests) identifier_ReadCompletedRequests )attribute (argument_list (identifier_session_id) identifier_session_id (keyword_argument (identifier_timestamp) identifier_timestamp (identifier_timestamp) identifier_timestamp )keyword_argument (keyword_argument (identifier_limit) identifier_limit (attribute (identifier_self) identifier_self (identifier_request_limit) identifier_request_limit )attribute )keyword_argument )argument_list )call (block (expression_statement (yield (expression_list (identifier_request) identifier_request (identifier_status) identifier_status )expression_list )yield )expression_statement )block )for_statement )block )function_definition )module
Fetch all the requests with a status message queued for them.
(module (function_definition (function_name_split) function_name_split (parameters (identifier_string) identifier_string (default_parameter (identifier_callback) identifier_callback (None) None )default_parameter (default_parameter (identifier_sep) identifier_sep (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_callback) identifier_callback (None) None )comparison_operator (block (return_statement (list_comprehension (call (identifier_callback) identifier_callback (argument_list (identifier_i) identifier_i )argument_list )call (for_in_clause (identifier_i) identifier_i (call (attribute (identifier_string) identifier_string (identifier_split) identifier_split )attribute (argument_list (identifier_sep) identifier_sep )argument_list )call )for_in_clause )list_comprehension )return_statement )block (else_clause (block (return_statement (call (attribute (identifier_string) identifier_string (identifier_split) identifier_split )attribute (argument_list (identifier_sep) identifier_sep )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Split the string and execute the callback function on each part. >>> string = "1 2 3 4" >>> parts = split(string, int) >>> parts [1, 2, 3, 4]
(module (function_definition (function_name_import_submodules) function_name_import_submodules (parameters (identifier_package) identifier_package (default_parameter (identifier_recursive) identifier_recursive (True) True )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_package) identifier_package (identifier_str) identifier_str )argument_list )call (block (expression_statement (assignment (identifier_package) identifier_package (call (attribute (identifier_importlib) identifier_importlib (identifier_import_module) identifier_import_module )attribute (argument_list (identifier_package) identifier_package )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_results) identifier_results (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_loader) identifier_loader (identifier_name) identifier_name (identifier_is_pkg) identifier_is_pkg )pattern_list (call (attribute (identifier_pkgutil) identifier_pkgutil (identifier_walk_packages) identifier_walk_packages )attribute (argument_list (attribute (identifier_package) identifier_package (identifier___path__) identifier___path__ )attribute )argument_list )call (block (expression_statement (assignment (identifier_full_name) identifier_full_name (binary_operator (binary_operator (attribute (identifier_package) identifier_package (identifier___name__) identifier___name__ )attribute (string_".") string_"." )binary_operator (identifier_name) identifier_name )binary_operator )assignment )expression_statement (expression_statement (assignment (subscript (identifier_results) identifier_results (identifier_name) identifier_name )subscript (call (attribute (identifier_importlib) identifier_importlib (identifier_import_module) identifier_import_module )attribute (argument_list (identifier_full_name) identifier_full_name )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (identifier_recursive) identifier_recursive (identifier_is_pkg) identifier_is_pkg )boolean_operator (block (expression_statement (call (attribute (identifier_results) identifier_results (identifier_update) identifier_update )attribute (argument_list (call (identifier_import_submodules) identifier_import_submodules (argument_list (identifier_full_name) identifier_full_name )argument_list )call )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_results) identifier_results )return_statement )block )function_definition )module
Import all submodules of a module, recursively, including subpackages :param package: package (name or actual module) :type package: str | module :rtype: dict[str, types.ModuleType]
(module (function_definition (function_name_pad) function_name_pad (parameters (identifier_self) identifier_self (identifier_pad_length) identifier_pad_length )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_pianoroll) identifier_pianoroll )attribute (call (attribute (identifier_np) identifier_np (identifier_pad) identifier_pad )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_pianoroll) identifier_pianoroll )attribute (tuple (tuple (integer_0) integer_0 (identifier_pad_length) identifier_pad_length )tuple (tuple (integer_0) integer_0 (integer_0) integer_0 )tuple )tuple (string_'constant') string_'constant' )argument_list )call )assignment )expression_statement )block )function_definition )module
Pad the pianoroll with zeros at the end along the time axis. Parameters ---------- pad_length : int The length to pad with zeros along the time axis.
(module (function_definition (function_name_delete_set) function_name_delete_set (parameters (identifier_self) identifier_self (identifier_x) identifier_x )parameters (block (if_statement (comparison_operator (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier__parents) identifier__parents )attribute )comparison_operator (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (identifier_members) identifier_members (call (identifier_list) identifier_list (argument_list (call (attribute (identifier_self) identifier_self (identifier_members) identifier_members )attribute (argument_list (identifier_x) identifier_x )argument_list )call )argument_list )call )assignment )expression_statement (for_statement (identifier_v) identifier_v (identifier_members) identifier_members (block (delete_statement (subscript (attribute (identifier_self) identifier_self (identifier__parents) identifier__parents )attribute (identifier_v) identifier_v )subscript )delete_statement (delete_statement (subscript (attribute (identifier_self) identifier_self (identifier__weights) identifier__weights )attribute (identifier_v) identifier_v )subscript )delete_statement (delete_statement (subscript (attribute (identifier_self) identifier_self (identifier__prev_next) identifier__prev_next )attribute (identifier_v) identifier_v )subscript )delete_statement (delete_statement (subscript (attribute (identifier_self) identifier_self (identifier__min_values) identifier__min_values )attribute (identifier_v) identifier_v )subscript )delete_statement )block )for_statement )block )function_definition )module
Removes the equivalence class containing `x`.
(module (function_definition (function_name_copy_r) function_name_copy_r (parameters (identifier_src) identifier_src (identifier_dst) identifier_dst )parameters (block (expression_statement (assignment (identifier_abssrc) identifier_abssrc (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (identifier_src) identifier_src )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_absdst) identifier_absdst (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (identifier_dst) identifier_dst )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_os) identifier_os (identifier_makedirs) identifier_makedirs )attribute (argument_list (identifier_absdst) identifier_absdst )argument_list )call )expression_statement )block (except_clause (identifier_OSError) identifier_OSError (block (pass_statement )pass_statement )block )except_clause )try_statement (for_statement (identifier_f) identifier_f (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_abssrc) identifier_abssrc )argument_list )call (block (expression_statement (assignment (identifier_fpath) identifier_fpath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_abssrc) identifier_abssrc (identifier_f) identifier_f )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isfile) identifier_isfile )attribute (argument_list (identifier_fpath) identifier_fpath )argument_list )call (block (expression_statement (call (attribute (identifier_shutil) identifier_shutil (identifier_copy) identifier_copy )attribute (argument_list (identifier_fpath) identifier_fpath (identifier_absdst) identifier_absdst )argument_list )call )expression_statement )block (elif_clause (not_operator (call (attribute (identifier_absdst) identifier_absdst (identifier_startswith) identifier_startswith )attribute (argument_list (identifier_fpath) identifier_fpath )argument_list )call )not_operator (block (expression_statement (call (identifier_copy_r) identifier_copy_r (argument_list (identifier_fpath) identifier_fpath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_absdst) identifier_absdst (identifier_f) identifier_f )argument_list )call )argument_list )call )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (identifier_warnings) identifier_warnings (identifier_warn) identifier_warn )attribute (argument_list (binary_operator (string_"Cannot copy %s to itself") string_"Cannot copy %s to itself" (identifier_fpath) identifier_fpath )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Implements a recursive copy function similar to Unix's "cp -r" command. Surprisingly, python does not have a real equivalent. shutil.copytree only works if the destination directory is not present. Args: src (str): Source folder to copy. dst (str): Destination folder.
(module (function_definition (function_name_rdf) function_name_rdf (parameters (identifier_self) identifier_self (typed_parameter (identifier_rdf) identifier_rdf (type (generic_type (identifier_Optional) identifier_Optional (type_parameter (type (generic_type (identifier_Union) identifier_Union (type_parameter (type (identifier_str) identifier_str )type (type (identifier_Graph) identifier_Graph )type )type_parameter )generic_type )type )type_parameter )generic_type )type )typed_parameter )parameters (type (None) None )type (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_rdf) identifier_rdf (identifier_Graph) identifier_Graph )argument_list )call (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_g) identifier_g )attribute (identifier_rdf) identifier_rdf )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_g) identifier_g )attribute (call (identifier_Graph) identifier_Graph (argument_list )argument_list )call )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_rdf) identifier_rdf (identifier_str) identifier_str )argument_list )call (block (if_statement (boolean_operator (comparison_operator (string_'\n') string_'\n' (identifier_rdf) identifier_rdf )comparison_operator (comparison_operator (string_'\r') string_'\r' (identifier_rdf) identifier_rdf )comparison_operator )boolean_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_g) identifier_g )attribute (identifier_parse) identifier_parse )attribute (argument_list (keyword_argument (identifier_data) identifier_data (identifier_rdf) identifier_rdf )keyword_argument (keyword_argument (identifier_format) identifier_format (attribute (identifier_self) identifier_self (identifier_rdf_format) identifier_rdf_format )attribute )keyword_argument )argument_list )call )expression_statement )block (elif_clause (comparison_operator (string_':') string_':' (identifier_rdf) identifier_rdf )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_g) identifier_g )attribute (identifier_parse) identifier_parse )attribute (argument_list (keyword_argument (identifier_location) identifier_location (identifier_rdf) identifier_rdf )keyword_argument (keyword_argument (identifier_format) identifier_format (attribute (identifier_self) identifier_self (identifier_rdf_format) identifier_rdf_format )attribute )keyword_argument )argument_list )call )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_g) identifier_g )attribute (identifier_parse) identifier_parse )attribute (argument_list (keyword_argument (identifier_source) identifier_source (identifier_rdf) identifier_rdf )keyword_argument (keyword_argument (identifier_format) identifier_format (attribute (identifier_self) identifier_self (identifier_rdf_format) identifier_rdf_format )attribute )keyword_argument )argument_list )call )expression_statement )block )else_clause )if_statement )block )if_statement )block )else_clause )if_statement )block )function_definition )module
Set the RDF DataSet to be evaulated. If ``rdf`` is a string, the presence of a return is the indicator that it is text instead of a location. :param rdf: File name, URL, representation of rdflib Graph
(module (function_definition (function_name_serve_protected_thumbnail) function_name_serve_protected_thumbnail (parameters (identifier_request) identifier_request (identifier_path) identifier_path )parameters (block (expression_statement (assignment (identifier_source_path) identifier_source_path (call (identifier_thumbnail_to_original_filename) identifier_thumbnail_to_original_filename (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_source_path) identifier_source_path )not_operator (block (raise_statement (call (identifier_Http404) identifier_Http404 (argument_list (string_'File not found') string_'File not found' )argument_list )call )raise_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_file_obj) identifier_file_obj (call (attribute (attribute (identifier_File) identifier_File (identifier_objects) identifier_objects )attribute (identifier_get) identifier_get )attribute (argument_list (keyword_argument (identifier_file) identifier_file (identifier_source_path) identifier_source_path )keyword_argument )argument_list )call )assignment )expression_statement )block (except_clause (attribute (identifier_File) identifier_File (identifier_DoesNotExist) identifier_DoesNotExist )attribute (block (raise_statement (call (identifier_Http404) identifier_Http404 (argument_list (binary_operator (string_'File not found %s') string_'File not found %s' (identifier_path) identifier_path )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement (if_statement (not_operator (call (attribute (identifier_file_obj) identifier_file_obj (identifier_has_read_permission) identifier_has_read_permission )attribute (argument_list (identifier_request) identifier_request )argument_list )call )not_operator (block (if_statement (attribute (identifier_settings) identifier_settings (identifier_DEBUG) identifier_DEBUG )attribute (block (raise_statement (identifier_PermissionDenied) identifier_PermissionDenied )raise_statement )block (else_clause (block (raise_statement (call (identifier_Http404) identifier_Http404 (argument_list (binary_operator (string_'File not found %s') string_'File not found %s' (identifier_path) identifier_path )binary_operator )argument_list )call )raise_statement )block )else_clause )if_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_thumbnail) identifier_thumbnail (call (identifier_ThumbnailFile) identifier_ThumbnailFile (argument_list (keyword_argument (identifier_name) identifier_name (identifier_path) identifier_path )keyword_argument (keyword_argument (identifier_storage) identifier_storage (attribute (attribute (identifier_file_obj) identifier_file_obj (identifier_file) identifier_file )attribute (identifier_thumbnail_storage) identifier_thumbnail_storage )attribute )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_thumbnail_server) identifier_thumbnail_server (identifier_serve) identifier_serve )attribute (argument_list (identifier_request) identifier_request (identifier_thumbnail) identifier_thumbnail (keyword_argument (identifier_save_as) identifier_save_as (False) False )keyword_argument )argument_list )call )return_statement )block (except_clause (identifier_Exception) identifier_Exception (block (raise_statement (call (identifier_Http404) identifier_Http404 (argument_list (binary_operator (string_'File not found %s') string_'File not found %s' (identifier_path) identifier_path )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
Serve protected thumbnails to authenticated users. If the user doesn't have read permissions, redirect to a static image.
(module (function_definition (function_name__compute_global_interested_rts) function_name__compute_global_interested_rts (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_interested_rts) identifier_interested_rts (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_rtfilter) identifier_rtfilter (call (attribute (attribute (identifier_self) identifier_self (identifier__peer_to_rtfilter_map) identifier__peer_to_rtfilter_map )attribute (identifier_values) identifier_values )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_interested_rts) identifier_interested_rts (identifier_update) identifier_update )attribute (argument_list (identifier_rtfilter) identifier_rtfilter )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_interested_rts) identifier_interested_rts (identifier_update) identifier_update )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier__vrfs_conf) identifier__vrfs_conf )attribute (identifier_vrf_interested_rts) identifier_vrf_interested_rts )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_interested_rts) identifier_interested_rts (identifier_add) identifier_add )attribute (argument_list (attribute (identifier_RouteTargetMembershipNLRI) identifier_RouteTargetMembershipNLRI (identifier_DEFAULT_RT) identifier_DEFAULT_RT )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_interested_rts) identifier_interested_rts (identifier_remove) identifier_remove )attribute (argument_list (attribute (identifier_RouteTargetMembershipNLRI) identifier_RouteTargetMembershipNLRI (identifier_DEFAULT_RT) identifier_DEFAULT_RT )attribute )argument_list )call )expression_statement (return_statement (identifier_interested_rts) identifier_interested_rts )return_statement )block )function_definition )module
Computes current global interested RTs for global tables. Computes interested RTs based on current RT filters for peers. This filter should be used to check if for RTs on a path that is installed in any global table (expect RT Table).