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(module (function_definition (function_name_open_async) function_name_open_async (parameters (identifier_self) identifier_self )parameters (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier_loop) identifier_loop )attribute )not_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_loop) identifier_loop )attribute (call (attribute (identifier_asyncio) identifier_asyncio (identifier_get_event_loop) identifier_get_event_loop )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (await (call (attribute (attribute (identifier_self) identifier_self (identifier_partition_manager) identifier_partition_manager )attribute (identifier_start_async) identifier_start_async )attribute (argument_list )argument_list )call )await )expression_statement )block )function_definition )module
Starts the host.
(module (function_definition (function_name_match_patterns) function_name_match_patterns (parameters (identifier_pathname) identifier_pathname (identifier_patterns) identifier_patterns )parameters (block (for_statement (identifier_pattern) identifier_pattern (identifier_patterns) identifier_patterns (block (if_statement (call (identifier_fnmatch) identifier_fnmatch (argument_list (identifier_pathname) identifier_pathname (identifier_pattern) identifier_pattern )argument_list )call (block (return_statement (True) True )return_statement )block )if_statement )block )for_statement (return_statement (False) False )return_statement )block )function_definition )module
Returns ``True`` if the pathname matches any of the given patterns.
(module (function_definition (function_name_box_filter) function_name_box_filter (parameters (identifier_array) identifier_array (default_parameter (identifier_n_iqr) identifier_n_iqr (float_1.5) float_1.5 )default_parameter (default_parameter (identifier_return_index) identifier_return_index (False) False )default_parameter )parameters (block (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_array) identifier_array (attribute (identifier_np) identifier_np (identifier_ndarray) identifier_ndarray )attribute )argument_list )call )not_operator (block (expression_statement (assignment (identifier_array) identifier_array (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_array) identifier_array )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_Q3) identifier_Q3 (call (attribute (identifier_np) identifier_np (identifier_percentile) identifier_percentile )attribute (argument_list (identifier_array) identifier_array (integer_75) integer_75 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_Q1) identifier_Q1 (call (attribute (identifier_np) identifier_np (identifier_percentile) identifier_percentile )attribute (argument_list (identifier_array) identifier_array (integer_25) integer_25 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_IQR) identifier_IQR (binary_operator (identifier_Q3) identifier_Q3 (identifier_Q1) identifier_Q1 )binary_operator )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_lower) identifier_lower (identifier_upper) identifier_upper )pattern_list (expression_list (binary_operator (identifier_Q1) identifier_Q1 (binary_operator (identifier_n_iqr) identifier_n_iqr (identifier_IQR) identifier_IQR )binary_operator )binary_operator (binary_operator (identifier_Q3) identifier_Q3 (binary_operator (identifier_n_iqr) identifier_n_iqr (identifier_IQR) identifier_IQR )binary_operator )binary_operator )expression_list )assignment )expression_statement (expression_statement (assignment (identifier_good_index) identifier_good_index (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (call (attribute (identifier_np) identifier_np (identifier_logical_and) identifier_logical_and )attribute (argument_list (comparison_operator (identifier_array) identifier_array (identifier_lower) identifier_lower )comparison_operator (comparison_operator (identifier_array) identifier_array (identifier_upper) identifier_upper )comparison_operator )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_bad_index) identifier_bad_index (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (call (attribute (identifier_np) identifier_np (identifier_logical_or) identifier_logical_or )attribute (argument_list (comparison_operator (identifier_array) identifier_array (identifier_lower) identifier_lower )comparison_operator (comparison_operator (identifier_array) identifier_array (identifier_upper) identifier_upper )comparison_operator )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (identifier_return_index) identifier_return_index (block (return_statement (expression_list (subscript (identifier_good_index) identifier_good_index (integer_0) integer_0 )subscript (subscript (identifier_bad_index) identifier_bad_index (integer_0) integer_0 )subscript )expression_list )return_statement )block (else_clause (block (return_statement (expression_list (subscript (identifier_array) identifier_array (identifier_good_index) identifier_good_index )subscript (subscript (identifier_array) identifier_array (identifier_bad_index) identifier_bad_index )subscript )expression_list )return_statement )block )else_clause )if_statement )block )function_definition )module
Box plot outlier detector. :param array: array of data. :param n_std: default 1.5, exclude data out of ``n_iqr`` IQR. :param return_index: boolean, default False, if True, only returns index.
(module (function_definition (function_name_cycle_class) function_name_cycle_class (parameters (identifier_self) identifier_self )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_self) identifier_self (identifier_RelaxTask) identifier_RelaxTask )argument_list )call (block (return_statement (attribute (identifier_abiinspect) identifier_abiinspect (identifier_Relaxation) identifier_Relaxation )attribute )return_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_self) identifier_self (identifier_GsTask) identifier_GsTask )argument_list )call (block (return_statement (attribute (identifier_abiinspect) identifier_abiinspect (identifier_GroundStateScfCycle) identifier_GroundStateScfCycle )attribute )return_statement )block )elif_clause (elif_clause (attribute (identifier_self) identifier_self (identifier_is_dfpt_task) identifier_is_dfpt_task )attribute (block (return_statement (attribute (identifier_abiinspect) identifier_abiinspect (identifier_D2DEScfCycle) identifier_D2DEScfCycle )attribute )return_statement )block )elif_clause )if_statement (return_statement (None) None )return_statement )block )function_definition )module
Return the subclass of ScfCycle associated to the task or None if no SCF algorithm if associated to the task.
(module (function_definition (function_name_verify_arguments) function_name_verify_arguments (parameters (identifier_self) identifier_self (default_parameter (identifier_args) identifier_args (None) None )default_parameter (default_parameter (identifier_kwargs) identifier_kwargs (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_args) identifier_args (conditional_expression (attribute (identifier_self) identifier_self (identifier_args) identifier_args )attribute (comparison_operator (identifier_args) identifier_args (None) None )comparison_operator (identifier_args) identifier_args )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_kwargs) identifier_kwargs (conditional_expression (attribute (identifier_self) identifier_self (identifier_kwargs) identifier_kwargs )attribute (comparison_operator (identifier_kwargs) identifier_kwargs (None) None )comparison_operator (identifier_kwargs) identifier_kwargs )conditional_expression )assignment )expression_statement (try_statement (block (expression_statement (call (identifier_verify_arguments) identifier_verify_arguments (argument_list (attribute (identifier_self) identifier_self (identifier__target) identifier__target )attribute (attribute (identifier_self) identifier_self (identifier__method_name) identifier__method_name )attribute (identifier_args) identifier_args (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement )block (except_clause (identifier_VerifyingBuiltinDoubleArgumentError) identifier_VerifyingBuiltinDoubleArgumentError (block (if_statement (call (attribute (attribute (identifier_doubles) identifier_doubles (identifier_lifecycle) identifier_lifecycle )attribute (identifier_ignore_builtin_verification) identifier_ignore_builtin_verification )attribute (argument_list )argument_list )call (block (raise_statement )raise_statement )block )if_statement )block )except_clause )try_statement )block )function_definition )module
Ensures that the arguments specified match the signature of the real method. :raise: ``VerifyingDoubleError`` if the arguments do not match.
(module (function_definition (function_name_add_port) function_name_add_port (parameters (identifier_self) identifier_self (identifier_port) identifier_port )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_ports) identifier_ports )attribute (identifier_append) identifier_append )attribute (argument_list (identifier_port) identifier_port )argument_list )call )expression_statement (if_statement (comparison_operator (attribute (identifier_port) identifier_port (identifier_io_type) identifier_io_type )attribute (attribute (identifier_self) identifier_self (identifier_port_seqs) identifier_port_seqs )attribute )comparison_operator (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_port_seqs) identifier_port_seqs )attribute (attribute (identifier_port) identifier_port (identifier_io_type) identifier_io_type )attribute )subscript (integer_0) integer_0 )assignment )expression_statement )block )if_statement (expression_statement (augmented_assignment (subscript (attribute (identifier_self) identifier_self (identifier_port_seqs) identifier_port_seqs )attribute (attribute (identifier_port) identifier_port (identifier_io_type) identifier_io_type )attribute )subscript (integer_1) integer_1 )augmented_assignment )expression_statement (expression_statement (assignment (attribute (identifier_port) identifier_port (identifier_sequence) identifier_sequence )attribute (subscript (attribute (identifier_self) identifier_self (identifier_port_seqs) identifier_port_seqs )attribute (attribute (identifier_port) identifier_port (identifier_io_type) identifier_io_type )attribute )subscript )assignment )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Add a port object to the definition :param port: port definition :type port: PortDef
(module (function_definition (function_name_parse) function_name_parse (parameters (identifier_self) identifier_self (default_parameter (identifier_charset) identifier_charset (None) None )default_parameter (default_parameter (identifier_headers) identifier_headers (None) None )default_parameter )parameters (block (if_statement (identifier_headers) identifier_headers (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_headers) identifier_headers )attribute (identifier_headers) identifier_headers )assignment )expression_statement )block (else_clause (block (if_statement (attribute (identifier_self) identifier_self (identifier_head) identifier_head )attribute (block (expression_statement (assignment (identifier_responses) identifier_responses (call (attribute (attribute (identifier_self) identifier_self (identifier_head) identifier_head )attribute (identifier_rsplit) identifier_rsplit )attribute (argument_list (string_b'\nHTTP/') string_b'\nHTTP/' (integer_1) integer_1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier__) identifier__ (identifier_response) identifier_response )pattern_list (call (attribute (subscript (identifier_responses) identifier_responses (unary_operator (integer_1) integer_1 )unary_operator )subscript (identifier_split) identifier_split )attribute (argument_list (string_b'\n') string_b'\n' (integer_1) integer_1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_response) identifier_response (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' (string_'ignore') string_'ignore' )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_response) identifier_response (string_u'') string_u'' )assignment )expression_statement )block )else_clause )if_statement (if_statement (attribute (identifier_six) identifier_six (identifier_PY2) identifier_PY2 )attribute (block (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_response) identifier_response (identifier_encode) identifier_encode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_headers) identifier_headers )attribute (call (attribute (identifier_email) identifier_email (identifier_message_from_string) identifier_message_from_string )attribute (argument_list (identifier_response) identifier_response )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (if_statement (comparison_operator (identifier_charset) identifier_charset (None) None )comparison_operator (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_self) identifier_self (identifier_body) identifier_body )attribute (attribute (identifier_six) identifier_six (identifier_text_type) identifier_text_type )attribute )argument_list )call (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_charset) identifier_charset )attribute (string_'utf-8') string_'utf-8' )assignment )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_detect_charset) identifier_detect_charset )attribute (argument_list )argument_list )call )expression_statement )block )else_clause )if_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_charset) identifier_charset )attribute (call (attribute (identifier_charset) identifier_charset (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__unicode_body) identifier__unicode_body )attribute (None) None )assignment )expression_statement )block )function_definition )module
Parse headers. This method is called after Grab instance performs network request.
(module (function_definition (function_name_flaky) function_name_flaky (parameters (default_parameter (identifier_max_runs) identifier_max_runs (None) None )default_parameter (default_parameter (identifier_min_passes) identifier_min_passes (None) None )default_parameter (default_parameter (identifier_rerun_filter) identifier_rerun_filter (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_wrapped) identifier_wrapped (None) None )assignment )expression_statement (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_max_runs) identifier_max_runs (string_'__call__') string_'__call__' )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_wrapped) identifier_wrapped (identifier_max_runs) identifier_max_runs )pattern_list (expression_list (identifier_max_runs) identifier_max_runs (None) None )expression_list )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_attrib) identifier_attrib (call (identifier_default_flaky_attributes) identifier_default_flaky_attributes (argument_list (identifier_max_runs) identifier_max_runs (identifier_min_passes) identifier_min_passes (identifier_rerun_filter) identifier_rerun_filter )argument_list )call )assignment )expression_statement (function_definition (function_name_wrapper) function_name_wrapper (parameters (identifier_wrapped_object) identifier_wrapped_object )parameters (block (for_statement (pattern_list (identifier_name) identifier_name (identifier_value) identifier_value )pattern_list (call (attribute (identifier_attrib) identifier_attrib (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_wrapped_object) identifier_wrapped_object (identifier_name) identifier_name (identifier_value) identifier_value )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_wrapped_object) identifier_wrapped_object )return_statement )block )function_definition (return_statement (conditional_expression (call (identifier_wrapper) identifier_wrapper (argument_list (identifier_wrapped) identifier_wrapped )argument_list )call (comparison_operator (identifier_wrapped) identifier_wrapped (None) None )comparison_operator (identifier_wrapper) identifier_wrapper )conditional_expression )return_statement )block )function_definition )module
Decorator used to mark a test as "flaky". When used in conjuction with the flaky nosetests plugin, will cause the decorated test to be retried until min_passes successes are achieved out of up to max_runs test runs. :param max_runs: The maximum number of times the decorated test will be run. :type max_runs: `int` :param min_passes: The minimum number of times the test must pass to be a success. :type min_passes: `int` :param rerun_filter: Filter function to decide whether a test should be rerun if it fails. Function signature is as follows: (err, name, test, plugin) -> should_rerun - err (`tuple` of `class`, :class:`Exception`, `traceback`): Information about the test failure (from sys.exc_info()) - name (`unicode`): The test name - test (:class:`nose.case.Test` or :class:`Function`): The test that has raised an error - plugin (:class:`FlakyNosePlugin` or :class:`FlakyPytestPlugin`): The flaky plugin. Has a :prop:`stream` that can be written to in order to add to the Flaky Report. :type rerun_filter: `callable` :return: A wrapper function that includes attributes describing the flaky test. :rtype: `callable`
(module (function_definition (function_name_download_remote_video) function_name_download_remote_video (parameters (identifier_self) identifier_self (identifier_remote_node) identifier_remote_node (identifier_session_id) identifier_session_id (identifier_video_name) identifier_video_name )parameters (block (try_statement (block (expression_statement (assignment (identifier_video_url) identifier_video_url (call (attribute (identifier_self) identifier_self (identifier__get_remote_video_url) identifier__get_remote_video_url )attribute (argument_list (identifier_remote_node) identifier_remote_node (identifier_session_id) identifier_session_id )argument_list )call )assignment )expression_statement )block (except_clause (attribute (attribute (identifier_requests) identifier_requests (identifier_exceptions) identifier_exceptions )attribute (identifier_ConnectionError) identifier_ConnectionError )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute (identifier_warning) identifier_warning )attribute (argument_list (string_"Remote server seems not to have video capabilities") string_"Remote server seems not to have video capabilities" )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement (if_statement (not_operator (identifier_video_url) identifier_video_url )not_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute (identifier_warning) identifier_warning )attribute (argument_list (string_"Test video not found in node '%s'") string_"Test video not found in node '%s'" (identifier_remote_node) identifier_remote_node )argument_list )call )expression_statement (return_statement )return_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__download_video) identifier__download_video )attribute (argument_list (identifier_video_url) identifier_video_url (identifier_video_name) identifier_video_name )argument_list )call )expression_statement )block )function_definition )module
Download the video recorded in the remote node during the specified test session and save it in videos folder :param remote_node: remote node name :param session_id: test session id :param video_name: video name
(module (function_definition (function_name_component_mul) function_name_component_mul (parameters (identifier_vec1) identifier_vec1 (identifier_vec2) identifier_vec2 )parameters (block (expression_statement (assignment (identifier_new_vec) identifier_new_vec (call (identifier_Vector2) identifier_Vector2 (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_new_vec) identifier_new_vec (identifier_X) identifier_X )attribute (binary_operator (attribute (identifier_vec1) identifier_vec1 (identifier_X) identifier_X )attribute (attribute (identifier_vec2) identifier_vec2 (identifier_X) identifier_X )attribute )binary_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_new_vec) identifier_new_vec (identifier_Y) identifier_Y )attribute (binary_operator (attribute (identifier_vec1) identifier_vec1 (identifier_Y) identifier_Y )attribute (attribute (identifier_vec2) identifier_vec2 (identifier_Y) identifier_Y )attribute )binary_operator )assignment )expression_statement (return_statement (identifier_new_vec) identifier_new_vec )return_statement )block )function_definition )module
Multiply the components of the vectors and return the result.
(module (function_definition (function_name_create) function_name_create (parameters (identifier_klass) identifier_klass (identifier_account) identifier_account (identifier_name) identifier_name )parameters (block (expression_statement (assignment (identifier_audience) identifier_audience (call (identifier_klass) identifier_klass (argument_list (identifier_account) identifier_account )argument_list )call )assignment )expression_statement (expression_statement (call (call (identifier_getattr) identifier_getattr (argument_list (identifier_audience) identifier_audience (string_'__create_audience__') string_'__create_audience__' )argument_list )call (argument_list (identifier_name) identifier_name )argument_list )call )expression_statement (try_statement (block (return_statement (call (attribute (identifier_audience) identifier_audience (identifier_reload) identifier_reload )attribute (argument_list )argument_list )call )return_statement )block (except_clause (as_pattern (identifier_BadRequest) identifier_BadRequest (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_audience) identifier_audience (identifier_delete) identifier_delete )attribute (argument_list )argument_list )call )expression_statement (raise_statement (identifier_e) identifier_e )raise_statement )block )except_clause )try_statement )block )function_definition )module
Creates a new tailored audience.
(module (function_definition (function_name_unmount) function_name_unmount (parameters (identifier_self) identifier_self (identifier_path) identifier_path )parameters (block (delete_statement (subscript (attribute (identifier_self) identifier_self (identifier__mountpoints) identifier__mountpoints )attribute (call (attribute (identifier_self) identifier_self (identifier__join_chunks) identifier__join_chunks )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__normalize_path) identifier__normalize_path )attribute (argument_list (identifier_path) identifier_path )argument_list )call )argument_list )call )subscript )delete_statement )block )function_definition )module
Remove a mountpoint from the filesystem.
(module (function_definition (function_name_fulfill) function_name_fulfill (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (pattern_list (identifier_is_fulfilled) identifier_is_fulfilled (identifier_result) identifier_result )pattern_list (call (attribute (identifier_self) identifier_self (identifier__check_fulfilled) identifier__check_fulfilled )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (identifier_is_fulfilled) identifier_is_fulfilled (block (return_statement (identifier_result) identifier_result )return_statement )block (else_clause (block (raise_statement (call (identifier_BrokenPromise) identifier_BrokenPromise (argument_list (identifier_self) identifier_self )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Evaluate the promise and return the result. Returns: The result of the `Promise` (second return value from the `check_func`) Raises: BrokenPromise: the `Promise` was not satisfied within the time or attempt limits.
(module (function_definition (function_name_passive_mode) function_name_passive_mode (parameters (identifier_self) identifier_self )parameters (type (generic_type (identifier_Tuple) identifier_Tuple (type_parameter (type (identifier_str) identifier_str )type (type (identifier_int) identifier_int )type )type_parameter )generic_type )type (block (expression_statement (yield (call (attribute (attribute (identifier_self) identifier_self (identifier__control_stream) identifier__control_stream )attribute (identifier_write_command) identifier_write_command )attribute (argument_list (call (identifier_Command) identifier_Command (argument_list (string_'PASV') string_'PASV' )argument_list )call )argument_list )call )yield )expression_statement (expression_statement (assignment (identifier_reply) identifier_reply (yield (call (attribute (attribute (identifier_self) identifier_self (identifier__control_stream) identifier__control_stream )attribute (identifier_read_reply) identifier_read_reply )attribute (argument_list )argument_list )call )yield )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_raise_if_not_match) identifier_raise_if_not_match )attribute (argument_list (string_'Passive mode') string_'Passive mode' (attribute (identifier_ReplyCodes) identifier_ReplyCodes (identifier_entering_passive_mode) identifier_entering_passive_mode )attribute (identifier_reply) identifier_reply )argument_list )call )expression_statement (try_statement (block (return_statement (call (attribute (attribute (attribute (attribute (identifier_wpull) identifier_wpull (identifier_protocol) identifier_protocol )attribute (identifier_ftp) identifier_ftp )attribute (identifier_util) identifier_util )attribute (identifier_parse_address) identifier_parse_address )attribute (argument_list (attribute (identifier_reply) identifier_reply (identifier_text) identifier_text )attribute )argument_list )call )return_statement )block (except_clause (as_pattern (identifier_ValueError) identifier_ValueError (as_pattern_target (identifier_error) identifier_error )as_pattern_target )as_pattern (block (raise_statement (call (identifier_ProtocolError) identifier_ProtocolError (argument_list (call (identifier_str) identifier_str (argument_list (identifier_error) identifier_error )argument_list )call )argument_list )call (identifier_error) identifier_error )raise_statement )block )except_clause )try_statement )block )function_definition )module
Enable passive mode. Returns: The address (IP address, port) of the passive port. Coroutine.
(module (function_definition (function_name_add_exp_key) function_name_add_exp_key (parameters (identifier_self) identifier_self (identifier_key) identifier_key (identifier_value) identifier_value (identifier_ex) identifier_ex )parameters (block (expression_statement (string_"Expired in seconds") string_"Expired in seconds" )expression_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_c) identifier_c )attribute (identifier_set) identifier_set )attribute (argument_list (identifier_key) identifier_key (identifier_value) identifier_value (identifier_ex) identifier_ex )argument_list )call )return_statement )block )function_definition )module
Expired in seconds
(module (function_definition (function_name_flip) function_name_flip (parameters (identifier_f) identifier_f )parameters (block (function_definition (function_name_wrapped) function_name_wrapped (parameters (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (return_statement (call (identifier_f) identifier_f (argument_list (list_splat (call (identifier_flip_first_two) identifier_flip_first_two (argument_list (identifier_args) identifier_args )argument_list )call )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition (expression_statement (assignment (identifier_f_spec) identifier_f_spec (call (identifier_make_func_curry_spec) identifier_make_func_curry_spec (argument_list (identifier_f) identifier_f )argument_list )call )assignment )expression_statement (return_statement (call (identifier_curry_by_spec) identifier_curry_by_spec (argument_list (identifier_f_spec) identifier_f_spec (identifier_wrapped) identifier_wrapped )argument_list )call )return_statement )block )function_definition )module
Calls the function f by flipping the first two positional arguments
(module (function_definition (function_name_unique) function_name_unique (parameters (identifier_self) identifier_self (default_parameter (identifier_key) identifier_key (None) None )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_key) identifier_key (identifier_basestring) identifier_basestring )argument_list )call (block (expression_statement (assignment (identifier_key) identifier_key (lambda (lambda_parameters (identifier_r) identifier_r (default_parameter (identifier_attr) identifier_attr (identifier_key) identifier_key )default_parameter )lambda_parameters (call (identifier_getattr) identifier_getattr (argument_list (identifier_r) identifier_r (identifier_attr) identifier_attr (None) None )argument_list )call )lambda )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_ret) identifier_ret (call (attribute (identifier_self) identifier_self (identifier_copy_template) identifier_copy_template )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_seen) identifier_seen (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_ob) identifier_ob (identifier_self) identifier_self (block (if_statement (comparison_operator (identifier_key) identifier_key (None) None )comparison_operator (block (try_statement (block (expression_statement (assignment (identifier_ob_dict) identifier_ob_dict (call (identifier_vars) identifier_vars (argument_list (identifier_ob) identifier_ob )argument_list )call )assignment )expression_statement )block (except_clause (identifier_TypeError) identifier_TypeError (block (expression_statement (assignment (identifier_ob_dict) identifier_ob_dict (call (identifier_dict) identifier_dict (generator_expression (tuple (identifier_k) identifier_k (call (identifier_getattr) identifier_getattr (argument_list (identifier_ob) identifier_ob (identifier_k) identifier_k )argument_list )call )tuple (for_in_clause (identifier_k) identifier_k (call (identifier__object_attrnames) identifier__object_attrnames (argument_list (identifier_ob) identifier_ob )argument_list )call )for_in_clause )generator_expression )call )assignment )expression_statement )block )except_clause )try_statement (expression_statement (assignment (identifier_reckey) identifier_reckey (call (identifier_tuple) identifier_tuple (argument_list (call (identifier_sorted) identifier_sorted (argument_list (call (attribute (identifier_ob_dict) identifier_ob_dict (identifier_items) identifier_items )attribute (argument_list )argument_list )call )argument_list )call )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_reckey) identifier_reckey (call (identifier_key) identifier_key (argument_list (identifier_ob) identifier_ob )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (if_statement (comparison_operator (identifier_reckey) identifier_reckey (identifier_seen) identifier_seen )comparison_operator (block (expression_statement (call (attribute (identifier_seen) identifier_seen (identifier_add) identifier_add )attribute (argument_list (identifier_reckey) identifier_reckey )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_ret) identifier_ret (identifier_insert) identifier_insert )attribute (argument_list (identifier_ob) identifier_ob )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Create a new table of objects,containing no duplicate values. @param key: (default=None) optional callable for computing a representative unique key for each object in the table. If None, then a key will be composed as a tuple of all the values in the object. @type key: callable, takes the record as an argument, and returns the key value or tuple to be used to represent uniqueness.
(module (function_definition (function_name__set_expressions) function_name__set_expressions (parameters (identifier_self) identifier_self (identifier_expressions) identifier_expressions )parameters (block (expression_statement (call (attribute (identifier_Symbolic_core) identifier_Symbolic_core (identifier__set_expressions) identifier__set_expressions )attribute (argument_list (identifier_self) identifier_self (identifier_expressions) identifier_expressions )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_Symbolic_core) identifier_Symbolic_core (identifier__set_variables) identifier__set_variables )attribute (argument_list (identifier_self) identifier_self (attribute (identifier_self) identifier_self (identifier_cacheable) identifier_cacheable )attribute )argument_list )call )expression_statement (for_statement (pattern_list (identifier_x) identifier_x (identifier_z) identifier_z )pattern_list (call (identifier_zip) identifier_zip (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_variables) identifier_variables )attribute (string_'X') string_'X' )subscript (subscript (attribute (identifier_self) identifier_self (identifier_variables) identifier_variables )attribute (string_'Z') string_'Z' )subscript )argument_list )call (block (expression_statement (assignment (subscript (identifier_expressions) identifier_expressions (string_'kdiag') string_'kdiag' )subscript (call (attribute (subscript (identifier_expressions) identifier_expressions (string_'kdiag') string_'kdiag' )subscript (identifier_subs) identifier_subs )attribute (argument_list (identifier_z) identifier_z (identifier_x) identifier_x )argument_list )call )assignment )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_Symbolic_core) identifier_Symbolic_core (identifier__set_expressions) identifier__set_expressions )attribute (argument_list (identifier_self) identifier_self (identifier_expressions) identifier_expressions )argument_list )call )expression_statement )block )function_definition )module
This method is overwritten because we need to modify kdiag by substituting z for x. We do this by calling the parent expression method to extract variables from expressions, then subsitute the z variables that are present with x.
(module (function_definition (function_name_get) function_name_get (parameters (identifier_self) identifier_self (identifier_indexes) identifier_indexes (default_parameter (identifier_as_list) identifier_as_list (False) False )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_indexes) identifier_indexes (tuple (identifier_list) identifier_list (identifier_blist) identifier_blist )tuple )argument_list )call (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_get_rows) identifier_get_rows )attribute (argument_list (identifier_indexes) identifier_indexes (identifier_as_list) identifier_as_list )argument_list )call )return_statement )block (else_clause (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_get_cell) identifier_get_cell )attribute (argument_list (identifier_indexes) identifier_indexes )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Given indexes will return a sub-set of the Series. This method will direct to the specific methods based on what types are passed in for the indexes. The type of the return is determined by the types of the parameters. :param indexes: index value, list of index values, or a list of booleans. :param as_list: if True then return the values as a list, if False return a Series. :return: either Series, list, or single value. The return is a shallow copy
(module (function_definition (function_name_ecoclass_to_coderef) function_name_ecoclass_to_coderef (parameters (identifier_self) identifier_self (identifier_cls) identifier_cls )parameters (block (expression_statement (assignment (identifier_code) identifier_code (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (identifier_ref) identifier_ref (None) None )assignment )expression_statement (for_statement (tuple_pattern (identifier_code) identifier_code (identifier_ref) identifier_ref (identifier_this_cls) identifier_this_cls )tuple_pattern (call (attribute (identifier_self) identifier_self (identifier_mappings) identifier_mappings )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (identifier_cls) identifier_cls (identifier_this_cls) identifier_this_cls )comparison_operator (block (return_statement (expression_list (identifier_code) identifier_code (identifier_ref) identifier_ref )expression_list )return_statement )block )if_statement )block )for_statement (return_statement (expression_list (None) None (None) None )expression_list )return_statement )block )function_definition )module
Map an ECO class to a GAF code This is the reciprocal to :ref:`coderef_to_ecoclass` Arguments --------- cls : str GAF evidence code, e.g. ISS, IDA reference: str ECO class CURIE/ID Return ------ (str, str) code, reference tuple
(module (function_definition (function_name_build) function_name_build (parameters (identifier_matrix) identifier_matrix )parameters (block (expression_statement (assignment (identifier_max_x) identifier_max_x (subscript (call (identifier_max) identifier_max (argument_list (identifier_matrix) identifier_matrix (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_t) identifier_t )lambda_parameters (subscript (identifier_t) identifier_t (integer_0) integer_0 )subscript )lambda )keyword_argument )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_min_x) identifier_min_x (subscript (call (identifier_min) identifier_min (argument_list (identifier_matrix) identifier_matrix (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_t) identifier_t )lambda_parameters (subscript (identifier_t) identifier_t (integer_0) integer_0 )subscript )lambda )keyword_argument )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_max_y) identifier_max_y (subscript (call (identifier_max) identifier_max (argument_list (identifier_matrix) identifier_matrix (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_t) identifier_t )lambda_parameters (subscript (identifier_t) identifier_t (integer_1) integer_1 )subscript )lambda )keyword_argument )argument_list )call (integer_1) integer_1 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_min_y) identifier_min_y (subscript (call (identifier_min) identifier_min (argument_list (identifier_matrix) identifier_matrix (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_t) identifier_t )lambda_parameters (subscript (identifier_t) identifier_t (integer_1) integer_1 )subscript )lambda )keyword_argument )argument_list )call (integer_1) integer_1 )subscript )assignment )expression_statement (expression_statement (yield (generator_expression (call (attribute (string_'') string_'' (identifier_join) identifier_join )attribute (generator_expression (subscript (identifier_matrix) identifier_matrix (identifier_i) identifier_i (identifier_j) identifier_j )subscript (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (identifier_min_x) identifier_min_x (binary_operator (identifier_max_x) identifier_max_x (integer_1) integer_1 )binary_operator )argument_list )call )for_in_clause )generator_expression )call (for_in_clause (identifier_j) identifier_j (call (identifier_range) identifier_range (argument_list (identifier_min_y) identifier_min_y (binary_operator (identifier_max_y) identifier_max_y (integer_1) integer_1 )binary_operator )argument_list )call )for_in_clause )generator_expression )yield )expression_statement )block )function_definition )module
Yield lines generated from given matrix
(module (function_definition (function_name_df2sd) function_name_df2sd (parameters (identifier_self) identifier_self (typed_parameter (identifier_df) identifier_df (type (string_'pd.DataFrame') string_'pd.DataFrame' )type )typed_parameter (typed_default_parameter (identifier_table) identifier_table (type (identifier_str) identifier_str )type (string_'_df') string_'_df' )typed_default_parameter (typed_default_parameter (identifier_libref) identifier_libref (type (identifier_str) identifier_str )type (string_'') string_'' )typed_default_parameter (typed_default_parameter (identifier_results) identifier_results (type (identifier_str) identifier_str )type (string_'') string_'' )typed_default_parameter (typed_default_parameter (identifier_keep_outer_quotes) identifier_keep_outer_quotes (type (identifier_bool) identifier_bool )type (False) False )typed_default_parameter )parameters (type (string_'SASdata') string_'SASdata' )type (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_dataframe2sasdata) identifier_dataframe2sasdata )attribute (argument_list (identifier_df) identifier_df (identifier_table) identifier_table (identifier_libref) identifier_libref (identifier_results) identifier_results (identifier_keep_outer_quotes) identifier_keep_outer_quotes )argument_list )call )return_statement )block )function_definition )module
This is an alias for 'dataframe2sasdata'. Why type all that? :param df: :class:`pandas.DataFrame` Pandas Data Frame to import to a SAS Data Set :param table: the name of the SAS Data Set to create :param libref: the libref for the SAS Data Set being created. Defaults to WORK, or USER if assigned :param results: format of results, SASsession.results is default, PANDAS, HTML or TEXT are the alternatives :param keep_outer_quotes: the defualt is for SAS to strip outer quotes from delimitted data. This lets you keep them :return: SASdata object
(module (function_definition (function_name_to_array) function_name_to_array (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_array) identifier_array (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_ShippingAddress) identifier_ShippingAddress (identifier_self) identifier_self )argument_list )call (identifier_to_array) identifier_to_array )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'country_code') string_'country_code' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_country_code) identifier_country_code )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'state') string_'state' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_state) identifier_state )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'city') string_'city' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_city) identifier_city )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'street_line1') string_'street_line1' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_street_line1) identifier_street_line1 )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'street_line2') string_'street_line2' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_street_line2) identifier_street_line2 )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_array) identifier_array (string_'post_code') string_'post_code' )subscript (call (identifier_u) identifier_u (argument_list (attribute (identifier_self) identifier_self (identifier_post_code) identifier_post_code )attribute )argument_list )call )assignment )expression_statement (return_statement (identifier_array) identifier_array )return_statement )block )function_definition )module
Serializes this ShippingAddress to a dictionary. :return: dictionary representation of this object. :rtype: dict
(module (function_definition (function_name_audits) function_name_audits (parameters (identifier_self) identifier_self (default_parameter (identifier_ticket) identifier_ticket (None) None )default_parameter (default_parameter (identifier_include) identifier_include (None) None )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (comparison_operator (identifier_ticket) identifier_ticket (None) None )comparison_operator (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__query_zendesk) identifier__query_zendesk )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_endpoint) identifier_endpoint )attribute (identifier_audits) identifier_audits )attribute (string_'ticket_audit') string_'ticket_audit' (keyword_argument (identifier_id) identifier_id (identifier_ticket) identifier_ticket )keyword_argument (keyword_argument (identifier_include) identifier_include (identifier_include) identifier_include )keyword_argument )argument_list )call )return_statement )block (else_clause (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__query_zendesk) identifier__query_zendesk )attribute (argument_list (attribute (attribute (attribute (identifier_self) identifier_self (identifier_endpoint) identifier_endpoint )attribute (identifier_audits) identifier_audits )attribute (identifier_cursor) identifier_cursor )attribute (string_'ticket_audit') string_'ticket_audit' (keyword_argument (identifier_include) identifier_include (identifier_include) identifier_include )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Retrieve TicketAudits. If ticket is passed, return the tickets for a specific audit. If ticket_id is None, a TicketAuditGenerator is returned to handle pagination. The way this generator works is a different to the other Zenpy generators as it is cursor based, allowing you to change the direction that you are consuming objects. This is done with the reversed() python method. For example: .. code-block:: python for audit in reversed(zenpy_client.tickets.audits()): print(audit) See the `Zendesk docs <https://developer.zendesk.com/rest_api/docs/core/ticket_audits#pagination>`__ for information on additional parameters. :param include: list of objects to sideload. `Side-loading API Docs <https://developer.zendesk.com/rest_api/docs/core/side_loading>`__. :param ticket: Ticket object or id
(module (function_definition (function_name__get_mu_tensor) function_name__get_mu_tensor (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_root) identifier_root (call (attribute (identifier_self) identifier_self (identifier__get_cubic_root) identifier__get_cubic_root )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dr) identifier_dr (binary_operator (attribute (identifier_self) identifier_self (identifier__h_max) identifier__h_max )attribute (attribute (identifier_self) identifier_self (identifier__h_min) identifier__h_min )attribute )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_mu) identifier_mu (call (attribute (identifier_tf) identifier_tf (identifier_maximum) identifier_maximum )attribute (argument_list (binary_operator (identifier_root) identifier_root (integer_2) integer_2 )binary_operator (binary_operator (parenthesized_expression (binary_operator (parenthesized_expression (binary_operator (call (attribute (identifier_tf) identifier_tf (identifier_sqrt) identifier_sqrt )attribute (argument_list (identifier_dr) identifier_dr )argument_list )call (integer_1) integer_1 )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (call (attribute (identifier_tf) identifier_tf (identifier_sqrt) identifier_sqrt )attribute (argument_list (identifier_dr) identifier_dr )argument_list )call (integer_1) integer_1 )binary_operator )parenthesized_expression )binary_operator )parenthesized_expression (integer_2) integer_2 )binary_operator )argument_list )call )assignment )expression_statement (return_statement (identifier_mu) identifier_mu )return_statement )block )function_definition )module
Get the min mu which minimize the surrogate. Returns: The mu_t.
(module (function_definition (function_name_timestamp_from_datetime) function_name_timestamp_from_datetime (parameters (identifier_dt) identifier_dt )parameters (block (try_statement (block (expression_statement (assignment (identifier_utc_dt) identifier_utc_dt (call (attribute (identifier_dt) identifier_dt (identifier_astimezone) identifier_astimezone )attribute (argument_list (attribute (identifier_pytz) identifier_pytz (identifier_utc) identifier_utc )attribute )argument_list )call )assignment )expression_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (expression_statement (assignment (identifier_utc_dt) identifier_utc_dt (call (attribute (identifier_dt) identifier_dt (identifier_replace) identifier_replace )attribute (argument_list (keyword_argument (identifier_tzinfo) identifier_tzinfo (attribute (identifier_pytz) identifier_pytz (identifier_utc) identifier_utc )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )except_clause )try_statement (return_statement (call (identifier_timegm) identifier_timegm (argument_list (call (attribute (identifier_utc_dt) identifier_utc_dt (identifier_timetuple) identifier_timetuple )attribute (argument_list )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Compute timestamp from a datetime object that could be timezone aware or unaware.
(module (function_definition (function_name_save_pip) function_name_save_pip (parameters (identifier_self) identifier_self (identifier_out_dir) identifier_out_dir )parameters (block (try_statement (block (import_statement (dotted_name (identifier_pkg_resources) identifier_pkg_resources )dotted_name )import_statement (expression_statement (assignment (identifier_installed_packages) identifier_installed_packages (list_comprehension (identifier_d) identifier_d (for_in_clause (identifier_d) identifier_d (call (identifier_iter) identifier_iter (argument_list (attribute (identifier_pkg_resources) identifier_pkg_resources (identifier_working_set) identifier_working_set )attribute )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_installed_packages_list) identifier_installed_packages_list (call (identifier_sorted) identifier_sorted (argument_list (list_comprehension (binary_operator (string_"%s==%s") string_"%s==%s" (tuple (attribute (identifier_i) identifier_i (identifier_key) identifier_key )attribute (attribute (identifier_i) identifier_i (identifier_version) identifier_version )attribute )tuple )binary_operator (for_in_clause (identifier_i) identifier_i (identifier_installed_packages) identifier_installed_packages )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_out_dir) identifier_out_dir (string_'requirements.txt') string_'requirements.txt' )argument_list )call (string_'w') string_'w' )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_write) identifier_write )attribute (argument_list (call (attribute (string_"\n") string_"\n" (identifier_join) identifier_join )attribute (argument_list (identifier_installed_packages_list) identifier_installed_packages_list )argument_list )call )argument_list )call )expression_statement )block )with_statement )block (except_clause (as_pattern (identifier_Exception) identifier_Exception (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_error) identifier_error )attribute (argument_list (string_"Error saving pip packages") string_"Error saving pip packages" )argument_list )call )expression_statement )block )except_clause )try_statement )block )function_definition )module
Saves the current working set of pip packages to requirements.txt
(module (function_definition (function_name__senddms) function_name__senddms (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_bot) identifier_bot )attribute (identifier_config) identifier_config )attribute (identifier_get) identifier_get )attribute (argument_list (string_"meta") string_"meta" (dictionary )dictionary )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tosend) identifier_tosend (call (attribute (identifier_data) identifier_data (identifier_get) identifier_get )attribute (argument_list (string_'send_dms') string_'send_dms' (True) True )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_data) identifier_data (string_'send_dms') string_'send_dms' )subscript (not_operator (identifier_tosend) identifier_tosend )not_operator )assignment )expression_statement (expression_statement (await (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_bot) identifier_bot )attribute (identifier_config) identifier_config )attribute (identifier_put) identifier_put )attribute (argument_list (string_'meta') string_'meta' (identifier_data) identifier_data )argument_list )call )await )expression_statement (expression_statement (await (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_bot) identifier_bot )attribute (identifier_responses) identifier_responses )attribute (identifier_toggle) identifier_toggle )attribute (argument_list (keyword_argument (identifier_message) identifier_message (string_"Forwarding of DMs to owner has been {status}.") string_"Forwarding of DMs to owner has been {status}." )keyword_argument (keyword_argument (identifier_success) identifier_success (subscript (identifier_data) identifier_data (string_'send_dms') string_'send_dms' )subscript )keyword_argument )argument_list )call )await )expression_statement )block )function_definition )module
Toggles sending DMs to owner.
(module (function_definition (function_name_take) function_name_take (parameters (identifier_self) identifier_self (identifier_n) identifier_n )parameters (block (if_statement (comparison_operator (identifier_n) identifier_n (integer_0) integer_0 )comparison_operator (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__transform) identifier__transform )attribute (argument_list (call (attribute (identifier_transformations) identifier_transformations (identifier_take_t) identifier_take_t )attribute (argument_list (integer_0) integer_0 )argument_list )call )argument_list )call )return_statement )block (else_clause (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__transform) identifier__transform )attribute (argument_list (call (attribute (identifier_transformations) identifier_transformations (identifier_take_t) identifier_take_t )attribute (argument_list (identifier_n) identifier_n )argument_list )call )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Take the first n elements of the sequence. >>> seq([1, 2, 3, 4]).take(2) [1, 2] :param n: number of elements to take :return: first n elements of sequence
(module (function_definition (function_name_generate_brome_config) function_name_generate_brome_config (parameters )parameters (block (expression_statement (assignment (identifier_config) identifier_config (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_key) identifier_key (call (identifier_iter) identifier_iter (argument_list (identifier_default_config) identifier_default_config )argument_list )call (block (for_statement (pattern_list (identifier_inner_key) identifier_inner_key (identifier_value) identifier_value )pattern_list (call (identifier_iter) identifier_iter (argument_list (call (attribute (subscript (identifier_default_config) identifier_default_config (identifier_key) identifier_key )subscript (identifier_items) identifier_items )attribute (argument_list )argument_list )call )argument_list )call (block (if_statement (comparison_operator (identifier_key) identifier_key (identifier_config) identifier_config )comparison_operator (block (expression_statement (assignment (subscript (identifier_config) identifier_config (identifier_key) identifier_key )subscript (dictionary )dictionary )assignment )expression_statement )block )if_statement (expression_statement (assignment (subscript (subscript (identifier_config) identifier_config (identifier_key) identifier_key )subscript (identifier_inner_key) identifier_inner_key )subscript (subscript (identifier_value) identifier_value (string_'default') string_'default' )subscript )assignment )expression_statement )block )for_statement )block )for_statement (return_statement (identifier_config) identifier_config )return_statement )block )function_definition )module
Generate a brome config with default value Returns: config (dict)
(module (function_definition (function_name_hasBeenRotated) function_name_hasBeenRotated (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (return_statement (comparison_operator (attribute (call (attribute (identifier_os) identifier_os (identifier_stat) identifier_stat )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__path) identifier__path )attribute )argument_list )call (identifier_st_ino) identifier_st_ino )attribute (attribute (identifier_self) identifier_self (identifier__inode) identifier__inode )attribute )comparison_operator )return_statement )block (except_clause (identifier_OSError) identifier_OSError (block (return_statement (True) True )return_statement )block )except_clause )try_statement )block )function_definition )module
Returns a boolean indicating whether the file has been removed and recreated during the time it has been open.
(module (function_definition (function_name_static_dag_launchpoint) function_name_static_dag_launchpoint (parameters (identifier_job) identifier_job (identifier_job_vars) identifier_job_vars )parameters (block (expression_statement (assignment (pattern_list (identifier_input_args) identifier_input_args (identifier_ids) identifier_ids )pattern_list (identifier_job_vars) identifier_job_vars )assignment )expression_statement (if_statement (subscript (identifier_input_args) identifier_input_args (string_'config_fastq') string_'config_fastq' )subscript (block (expression_statement (assignment (identifier_cores) identifier_cores (subscript (identifier_input_args) identifier_input_args (string_'cpu_count') string_'cpu_count' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_a) identifier_a (call (attribute (call (attribute (identifier_job) identifier_job (identifier_wrapJobFn) identifier_wrapJobFn )attribute (argument_list (identifier_mapsplice) identifier_mapsplice (identifier_job_vars) identifier_job_vars (keyword_argument (identifier_cores) identifier_cores (identifier_cores) identifier_cores )keyword_argument (keyword_argument (identifier_disk) identifier_disk (string_'130G') string_'130G' )keyword_argument )argument_list )call (identifier_encapsulate) identifier_encapsulate )attribute (argument_list )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_a) identifier_a (call (attribute (call (attribute (identifier_job) identifier_job (identifier_wrapJobFn) identifier_wrapJobFn )attribute (argument_list (identifier_merge_fastqs) identifier_merge_fastqs (identifier_job_vars) identifier_job_vars (keyword_argument (identifier_disk) identifier_disk (string_'70 G') string_'70 G' )keyword_argument )argument_list )call (identifier_encapsulate) identifier_encapsulate )attribute (argument_list )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_b) identifier_b (call (attribute (identifier_job) identifier_job (identifier_wrapJobFn) identifier_wrapJobFn )attribute (argument_list (identifier_consolidate_output) identifier_consolidate_output (identifier_job_vars) identifier_job_vars (call (attribute (identifier_a) identifier_a (identifier_rv) identifier_rv )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_job) identifier_job (identifier_addChild) identifier_addChild )attribute (argument_list (identifier_a) identifier_a )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_a) identifier_a (identifier_addChild) identifier_addChild )attribute (argument_list (identifier_b) identifier_b )argument_list )call )expression_statement )block )function_definition )module
Statically define jobs in the pipeline job_vars: tuple Tuple of dictionaries: input_args and ids
(module (function_definition (function_name_cursor_save_attrs) function_name_cursor_save_attrs (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_cur_saved_r) identifier_cur_saved_r )attribute (attribute (identifier_self) identifier_self (identifier_cur_r) identifier_cur_r )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_cur_saved_c) identifier_cur_saved_c )attribute (attribute (identifier_self) identifier_self (identifier_cur_c) identifier_cur_c )attribute )assignment )expression_statement )block )function_definition )module
Save current cursor position.
(module (function_definition (function_name_command) function_name_command (parameters (identifier_dev) identifier_dev (identifier_service) identifier_service (identifier_method) identifier_method (identifier_parameters) identifier_parameters )parameters (block (expression_statement (assignment (identifier_params) identifier_params (None) None )assignment )expression_statement (if_statement (comparison_operator (identifier_parameters) identifier_parameters (None) None )comparison_operator (block (expression_statement (assignment (identifier_params) identifier_params (call (attribute (identifier_ast) identifier_ast (identifier_literal_eval) identifier_literal_eval )attribute (argument_list (identifier_parameters) identifier_parameters )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (binary_operator (string_"Calling %s.%s with params %s") string_"Calling %s.%s with params %s" (tuple (identifier_service) identifier_service (identifier_method) identifier_method (identifier_params) identifier_params )tuple )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_res) identifier_res (await (call (attribute (identifier_dev) identifier_dev (identifier_raw_command) identifier_raw_command )attribute (argument_list (identifier_service) identifier_service (identifier_method) identifier_method (identifier_params) identifier_params )argument_list )call )await )assignment )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (identifier_res) identifier_res )argument_list )call )expression_statement )block )function_definition )module
Run a raw command.
(module (function_definition (function_name_set_forbidden_types) function_name_set_forbidden_types (parameters (identifier_self) identifier_self (identifier_types) identifier_types )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier__forbidden_types) identifier__forbidden_types )attribute (identifier_types) identifier_types )comparison_operator (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__forbidden_types) identifier__forbidden_types )attribute (identifier_types) identifier_types )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_invalidateFilter) identifier_invalidateFilter )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Set all forbidden type values :param typees: a list with forbidden type values :type typees: list :returns: None :rtype: None :raises: None
(module (function_definition (function_name_write_file) function_name_write_file (parameters (identifier_self) identifier_self (default_parameter (identifier_filename) identifier_filename (string_"paths.dat") string_"paths.dat" )default_parameter )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier_zopen) identifier_zopen (argument_list (identifier_filename) identifier_filename (string_"wt") string_"wt" )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_write) identifier_write )attribute (argument_list (binary_operator (call (identifier_str) identifier_str (argument_list (identifier_self) identifier_self )argument_list )call (string_"\n") string_"\n" )binary_operator )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Write paths.dat.
(module (function_definition (function_name_section_path_lengths) function_name_section_path_lengths (parameters (identifier_neurites) identifier_neurites (default_parameter (identifier_neurite_type) identifier_neurite_type (attribute (identifier_NeuriteType) identifier_NeuriteType (identifier_all) identifier_all )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_dist) identifier_dist (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_neurite_filter) identifier_neurite_filter (call (identifier_is_type) identifier_is_type (argument_list (identifier_neurite_type) identifier_neurite_type )argument_list )call )assignment )expression_statement (for_statement (identifier_s) identifier_s (call (identifier_iter_sections) identifier_iter_sections (argument_list (identifier_neurites) identifier_neurites (keyword_argument (identifier_neurite_filter) identifier_neurite_filter (identifier_neurite_filter) identifier_neurite_filter )keyword_argument )argument_list )call (block (expression_statement (assignment (subscript (identifier_dist) identifier_dist (identifier_s) identifier_s )subscript (attribute (identifier_s) identifier_s (identifier_length) identifier_length )attribute )assignment )expression_statement )block )for_statement (function_definition (function_name_pl2) function_name_pl2 (parameters (identifier_node) identifier_node )parameters (block (return_statement (call (identifier_sum) identifier_sum (generator_expression (subscript (identifier_dist) identifier_dist (identifier_n) identifier_n )subscript (for_in_clause (identifier_n) identifier_n (call (attribute (identifier_node) identifier_node (identifier_iupstream) identifier_iupstream )attribute (argument_list )argument_list )call )for_in_clause )generator_expression )call )return_statement )block )function_definition (return_statement (call (identifier_map_sections) identifier_map_sections (argument_list (identifier_pl2) identifier_pl2 (identifier_neurites) identifier_neurites (keyword_argument (identifier_neurite_type) identifier_neurite_type (identifier_neurite_type) identifier_neurite_type )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Path lengths of a collection of neurites
(module (function_definition (function_name_get_rule) function_name_get_rule (parameters (identifier_self) identifier_self (identifier_template_name) identifier_template_name )parameters (block (for_statement (pattern_list (identifier_regex) identifier_regex (identifier_render_func) identifier_render_func )pattern_list (attribute (identifier_self) identifier_self (identifier_rules) identifier_rules )attribute (block (if_statement (call (attribute (identifier_re) identifier_re (identifier_match) identifier_match )attribute (argument_list (identifier_regex) identifier_regex (identifier_template_name) identifier_template_name )argument_list )call (block (return_statement (identifier_render_func) identifier_render_func )return_statement )block )if_statement )block )for_statement (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_"no matching rule") string_"no matching rule" )argument_list )call )raise_statement )block )function_definition )module
Find a matching compilation rule for a function. Raises a :exc:`ValueError` if no matching rule can be found. :param template_name: the name of the template
(module (function_definition (function_name_format_progress) function_name_format_progress (parameters (identifier_i) identifier_i (identifier_n) identifier_n )parameters (block (if_statement (comparison_operator (identifier_n) identifier_n (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (identifier_fraction) identifier_fraction (integer_0) integer_0 )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_fraction) identifier_fraction (binary_operator (call (identifier_float) identifier_float (argument_list (identifier_i) identifier_i )argument_list )call (identifier_n) identifier_n )binary_operator )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_LEN_BAR) identifier_LEN_BAR (integer_25) integer_25 )assignment )expression_statement (expression_statement (assignment (identifier_num_plus) identifier_num_plus (call (identifier_int) identifier_int (argument_list (call (identifier_round) identifier_round (argument_list (binary_operator (identifier_fraction) identifier_fraction (identifier_LEN_BAR) identifier_LEN_BAR )binary_operator )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s_plus) identifier_s_plus (binary_operator (string_'+') string_'+' (identifier_num_plus) identifier_num_plus )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_s_point) identifier_s_point (binary_operator (string_'.') string_'.' (parenthesized_expression (binary_operator (identifier_LEN_BAR) identifier_LEN_BAR (identifier_num_plus) identifier_num_plus )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (return_statement (call (attribute (string_'[{0!s}{1!s}] {2:d}/{3:d} - {4:.1f}%') string_'[{0!s}{1!s}] {2:d}/{3:d} - {4:.1f}%' (identifier_format) identifier_format )attribute (argument_list (identifier_s_plus) identifier_s_plus (identifier_s_point) identifier_s_point (identifier_i) identifier_i (identifier_n) identifier_n (binary_operator (identifier_fraction) identifier_fraction (integer_100) integer_100 )binary_operator )argument_list )call )return_statement )block )function_definition )module
Returns string containing a progress bar, a percentage, etc.
(module (function_definition (function_name_normalize_placeholders) function_name_normalize_placeholders (parameters (identifier_arg) identifier_arg (default_parameter (identifier_inject_quotes) identifier_inject_quotes (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_number_placeholders) identifier_number_placeholders (call (attribute (identifier_re) identifier_re (identifier_findall) identifier_findall )attribute (argument_list (string_r'{{\s*\d+\s*}}') string_r'{{\s*\d+\s*}}' (identifier_arg) identifier_arg )argument_list )call )assignment )expression_statement (for_statement (identifier_number_placeholder) identifier_number_placeholder (identifier_number_placeholders) identifier_number_placeholders (block (expression_statement (assignment (identifier_number) identifier_number (call (attribute (call (attribute (identifier_re) identifier_re (identifier_search) identifier_search )attribute (argument_list (string_r'\d+') string_r'\d+' (identifier_number_placeholder) identifier_number_placeholder )argument_list )call (identifier_group) identifier_group )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_arg) identifier_arg (call (attribute (identifier_arg) identifier_arg (identifier_replace) identifier_replace )attribute (argument_list (identifier_number_placeholder) identifier_number_placeholder (binary_operator (binary_operator (string_'{{_') string_'{{_' (identifier_number) identifier_number )binary_operator (string_'}}') string_'}}' )binary_operator )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (conditional_expression (call (attribute (call (attribute (identifier_arg) identifier_arg (identifier_replace) identifier_replace )attribute (argument_list (string_'{{') string_'{{' (string_'"{{') string_'"{{' )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (string_'}}') string_'}}' (string_'}}"') string_'}}"' )argument_list )call (identifier_inject_quotes) identifier_inject_quotes (identifier_arg) identifier_arg )conditional_expression )return_statement )block )function_definition )module
Normalize placeholders' names so that the template can be ingested into Jinja template engine. - Jinja does not accept numbers as placeholder names, so add a "_" before the numbers to make them valid placeholder names. - Surround placeholders expressions with "" so we can preserve spaces inside the positional arguments. Args: arg: The string to process. inject_qoutes: True if we want to surround placeholders with a pair of quotes. Returns: A processed string where placeholders are surrounded by "" and numbered placeholders are prepended with "_".
(module (function_definition (function_name_transform) function_name_transform (parameters (identifier_self) identifier_self (identifier_Y) identifier_Y )parameters (block (try_statement (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_data_pca) identifier_data_pca )attribute (identifier_transform) identifier_transform )attribute (argument_list (identifier_Y) identifier_Y )argument_list )call )return_statement )block (except_clause (identifier_AttributeError) identifier_AttributeError (block (try_statement (block (if_statement (comparison_operator (subscript (attribute (identifier_Y) identifier_Y (identifier_shape) identifier_shape )attribute (integer_1) integer_1 )subscript (subscript (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_shape) identifier_shape )attribute (integer_1) integer_1 )subscript )comparison_operator (block (raise_statement (identifier_ValueError) identifier_ValueError )raise_statement )block )if_statement (return_statement (identifier_Y) identifier_Y )return_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (raise_statement (identifier_ValueError) identifier_ValueError )raise_statement )block )except_clause )try_statement )block )except_clause (except_clause (identifier_ValueError) identifier_ValueError (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (concatenated_string (string_"data of shape {} cannot be transformed") string_"data of shape {} cannot be transformed" (string_" to graph built on data of shape {}") string_" to graph built on data of shape {}" )concatenated_string (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_Y) identifier_Y (identifier_shape) identifier_shape )attribute (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_shape) identifier_shape )attribute )argument_list )call )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
Transform input data `Y` to reduced data space defined by `self.data` Takes data in the same ambient space as `self.data` and transforms it to be in the same reduced space as `self.data_nu`. Parameters ---------- Y : array-like, shape=[n_samples_y, n_features] n_features must be the same as `self.data`. Returns ------- Transformed data, shape=[n_samples_y, n_pca] Raises ------ ValueError : if Y.shape[1] != self.data.shape[1]
(module (function_definition (function_name_get_session_identifiers) function_name_get_session_identifiers (parameters (identifier_cls) identifier_cls (default_parameter (identifier_folder) identifier_folder (None) None )default_parameter (default_parameter (identifier_inputfile) identifier_inputfile (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_sessions) identifier_sessions (list )list )assignment )expression_statement (if_statement (boolean_operator (identifier_inputfile) identifier_inputfile (identifier_folder) identifier_folder )boolean_operator (block (raise_statement (call (identifier_MQ2Exception) identifier_MQ2Exception (argument_list (string_'You should specify either a folder or a file') string_'You should specify either a folder or a file' )argument_list )call )raise_statement )block )if_statement (if_statement (identifier_folder) identifier_folder (block (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_folder) identifier_folder )argument_list )call )not_operator (block (return_statement (identifier_sessions) identifier_sessions )return_statement )block )if_statement (for_statement (pattern_list (identifier_root) identifier_root (identifier_dirs) identifier_dirs (identifier_files) identifier_files )pattern_list (call (attribute (identifier_os) identifier_os (identifier_walk) identifier_walk )attribute (argument_list (identifier_folder) identifier_folder )argument_list )call (block (for_statement (identifier_filename) identifier_filename (identifier_files) identifier_files (block (expression_statement (assignment (identifier_filename) identifier_filename (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_root) identifier_root (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (for_statement (identifier_ext) identifier_ext (identifier_SUPPORTED_FILES) identifier_SUPPORTED_FILES (block (if_statement (call (attribute (identifier_filename) identifier_filename (identifier_endswith) identifier_endswith )attribute (argument_list (identifier_ext) identifier_ext )argument_list )call (block (expression_statement (assignment (identifier_wbook) identifier_wbook (call (attribute (identifier_xlrd) identifier_xlrd (identifier_open_workbook) identifier_open_workbook )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (for_statement (identifier_sheet) identifier_sheet (call (attribute (identifier_wbook) identifier_wbook (identifier_sheets) identifier_sheets )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (attribute (identifier_sheet) identifier_sheet (identifier_name) identifier_name )attribute (identifier_sessions) identifier_sessions )comparison_operator (block (expression_statement (call (attribute (identifier_sessions) identifier_sessions (identifier_append) identifier_append )attribute (argument_list (attribute (identifier_sheet) identifier_sheet (identifier_name) identifier_name )attribute )argument_list )call )expression_statement )block )if_statement )block )for_statement )block )if_statement )block )for_statement )block )for_statement )block )for_statement )block (elif_clause (identifier_inputfile) identifier_inputfile (block (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_inputfile) identifier_inputfile )argument_list )call (block (return_statement (identifier_sessions) identifier_sessions )return_statement )block )if_statement (for_statement (identifier_ext) identifier_ext (identifier_SUPPORTED_FILES) identifier_SUPPORTED_FILES (block (if_statement (call (attribute (identifier_inputfile) identifier_inputfile (identifier_endswith) identifier_endswith )attribute (argument_list (identifier_ext) identifier_ext )argument_list )call (block (expression_statement (assignment (identifier_wbook) identifier_wbook (call (attribute (identifier_xlrd) identifier_xlrd (identifier_open_workbook) identifier_open_workbook )attribute (argument_list (identifier_inputfile) identifier_inputfile )argument_list )call )assignment )expression_statement (for_statement (identifier_sheet) identifier_sheet (call (attribute (identifier_wbook) identifier_wbook (identifier_sheets) identifier_sheets )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (attribute (identifier_sheet) identifier_sheet (identifier_name) identifier_name )attribute (identifier_sessions) identifier_sessions )comparison_operator (block (expression_statement (call (attribute (identifier_sessions) identifier_sessions (identifier_append) identifier_append )attribute (argument_list (attribute (identifier_sheet) identifier_sheet (identifier_name) identifier_name )attribute )argument_list )call )expression_statement )block )if_statement )block )for_statement )block )if_statement )block )for_statement )block )elif_clause )if_statement (return_statement (identifier_sessions) identifier_sessions )return_statement )block )function_definition )module
Retrieve the list of session identifiers contained in the data on the folder or the inputfile. For this plugin, it returns the list of excel sheet available. :kwarg folder: the path to the folder containing the files to check. This folder may contain sub-folders. :kwarg inputfile: the path to the input file to use
(module (function_definition (function_name_from_dsn) function_name_from_dsn (parameters (identifier_cls) identifier_cls (identifier_dsn) identifier_dsn (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (expression_statement (assignment (identifier_init_args) identifier_init_args (call (identifier__parse_dsn) identifier__parse_dsn (argument_list (identifier_dsn) identifier_dsn )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_host) identifier_host (identifier_port) identifier_port )pattern_list (subscript (call (attribute (identifier_init_args) identifier_init_args (identifier_pop) identifier_pop )attribute (argument_list (string_'hosts') string_'hosts' )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (subscript (identifier_init_args) identifier_init_args (string_'host') string_'host' )subscript (identifier_host) identifier_host )assignment )expression_statement (expression_statement (assignment (subscript (identifier_init_args) identifier_init_args (string_'port') string_'port' )subscript (identifier_port) identifier_port )assignment )expression_statement (expression_statement (call (attribute (identifier_init_args) identifier_init_args (identifier_update) identifier_update )attribute (argument_list (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (return_statement (call (identifier_cls) identifier_cls (argument_list (dictionary_splat (identifier_init_args) identifier_init_args )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
r"""Generate an instance of InfluxDBClient from given data source name. Return an instance of :class:`~.InfluxDBClient` from the provided data source name. Supported schemes are "influxdb", "https+influxdb" and "udp+influxdb". Parameters for the :class:`~.InfluxDBClient` constructor may also be passed to this method. :param dsn: data source name :type dsn: string :param kwargs: additional parameters for `InfluxDBClient` :type kwargs: dict :raises ValueError: if the provided DSN has any unexpected values :Example: :: >> cli = InfluxDBClient.from_dsn('influxdb://username:password@\ localhost:8086/databasename', timeout=5) >> type(cli) <class 'influxdb.client.InfluxDBClient'> >> cli = InfluxDBClient.from_dsn('udp+influxdb://username:pass@\ localhost:8086/databasename', timeout=5, udp_port=159) >> print('{0._baseurl} - {0.use_udp} {0.udp_port}'.format(cli)) http://localhost:8086 - True 159 .. note:: parameters provided in `**kwargs` may override dsn parameters .. note:: when using "udp+influxdb" the specified port (if any) will be used for the TCP connection; specify the UDP port with the additional `udp_port` parameter (cf. examples).
(module (function_definition (function_name_fft) function_name_fft (parameters (identifier_xi) identifier_xi (identifier_yi) identifier_yi (default_parameter (identifier_axis) identifier_axis (integer_0) integer_0 )default_parameter )parameters (type (identifier_tuple) identifier_tuple )type (block (if_statement (comparison_operator (attribute (identifier_xi) identifier_xi (identifier_ndim) identifier_ndim )attribute (integer_1) integer_1 )comparison_operator (block (raise_statement (call (attribute (identifier_wt_exceptions) identifier_wt_exceptions (identifier_DimensionalityError) identifier_DimensionalityError )attribute (argument_list (integer_1) integer_1 (attribute (identifier_xi) identifier_xi (identifier_ndim) identifier_ndim )attribute )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_spacing) identifier_spacing (call (attribute (identifier_np) identifier_np (identifier_diff) identifier_diff )attribute (argument_list (identifier_xi) identifier_xi )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (identifier_np) identifier_np (identifier_allclose) identifier_allclose )attribute (argument_list (identifier_spacing) identifier_spacing (call (attribute (identifier_spacing) identifier_spacing (identifier_mean) identifier_mean )attribute (argument_list )argument_list )call )argument_list )call )not_operator (block (raise_statement (call (identifier_RuntimeError) identifier_RuntimeError (argument_list (string_"WrightTools.kit.fft: argument xi must be evenly spaced") string_"WrightTools.kit.fft: argument xi must be evenly spaced" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_yi) identifier_yi (call (attribute (attribute (identifier_np) identifier_np (identifier_fft) identifier_fft )attribute (identifier_fft) identifier_fft )attribute (argument_list (identifier_yi) identifier_yi (keyword_argument (identifier_axis) identifier_axis (identifier_axis) identifier_axis )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_d) identifier_d (binary_operator (parenthesized_expression (binary_operator (call (attribute (identifier_xi) identifier_xi (identifier_max) identifier_max )attribute (argument_list )argument_list )call (call (attribute (identifier_xi) identifier_xi (identifier_min) identifier_min )attribute (argument_list )argument_list )call )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (attribute (identifier_xi) identifier_xi (identifier_size) identifier_size )attribute (integer_1) integer_1 )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_xi) identifier_xi (call (attribute (attribute (identifier_np) identifier_np (identifier_fft) identifier_fft )attribute (identifier_fftfreq) identifier_fftfreq )attribute (argument_list (attribute (identifier_xi) identifier_xi (identifier_size) identifier_size )attribute (keyword_argument (identifier_d) identifier_d (identifier_d) identifier_d )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_xi) identifier_xi (call (attribute (attribute (identifier_np) identifier_np (identifier_fft) identifier_fft )attribute (identifier_fftshift) identifier_fftshift )attribute (argument_list (identifier_xi) identifier_xi )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_yi) identifier_yi (call (attribute (attribute (identifier_np) identifier_np (identifier_fft) identifier_fft )attribute (identifier_fftshift) identifier_fftshift )attribute (argument_list (identifier_yi) identifier_yi (keyword_argument (identifier_axes) identifier_axes (identifier_axis) identifier_axis )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (expression_list (identifier_xi) identifier_xi (identifier_yi) identifier_yi )expression_list )return_statement )block )function_definition )module
Take the 1D FFT of an N-dimensional array and return "sensible" properly shifted arrays. Parameters ---------- xi : numpy.ndarray 1D array over which the points to be FFT'ed are defined yi : numpy.ndarray ND array with values to FFT axis : int axis of yi to perform FFT over Returns ------- xi : 1D numpy.ndarray 1D array. Conjugate to input xi. Example: if input xi is in the time domain, output xi is in frequency domain. yi : ND numpy.ndarray FFT. Has the same shape as the input array (yi).
(module (function_definition (function_name_to_sky) function_name_to_sky (parameters (identifier_self) identifier_self (identifier_wcs) identifier_wcs (default_parameter (identifier_mode) identifier_mode (string_'all') string_'all' )default_parameter )parameters (block (expression_statement (assignment (identifier_sky_params) identifier_sky_params (call (attribute (identifier_self) identifier_self (identifier__to_sky_params) identifier__to_sky_params )attribute (argument_list (identifier_wcs) identifier_wcs (keyword_argument (identifier_mode) identifier_mode (identifier_mode) identifier_mode )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (identifier_SkyEllipticalAnnulus) identifier_SkyEllipticalAnnulus (argument_list (dictionary_splat (identifier_sky_params) identifier_sky_params )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Convert the aperture to a `SkyEllipticalAnnulus` object defined in celestial coordinates. Parameters ---------- wcs : `~astropy.wcs.WCS` The world coordinate system (WCS) transformation to use. mode : {'all', 'wcs'}, optional Whether to do the transformation including distortions (``'all'``; default) or only including only the core WCS transformation (``'wcs'``). Returns ------- aperture : `SkyEllipticalAnnulus` object A `SkyEllipticalAnnulus` object.
(module (function_definition (function_name_load_datafile) function_name_load_datafile (parameters (identifier_self) identifier_self (identifier_name) identifier_name (default_parameter (identifier_search_path) identifier_search_path (None) None )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (not_operator (identifier_search_path) identifier_search_path )not_operator (block (expression_statement (assignment (identifier_search_path) identifier_search_path (attribute (identifier_self) identifier_self (identifier_define_dir) identifier_define_dir )attribute )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_debug_msg) identifier_debug_msg )attribute (argument_list (binary_operator (string_'loading datafile %s from %s') string_'loading datafile %s from %s' (tuple (identifier_name) identifier_name (call (identifier_str) identifier_str (argument_list (identifier_search_path) identifier_search_path )argument_list )call )tuple )binary_operator )argument_list )call )expression_statement (return_statement (call (attribute (identifier_codec) identifier_codec (identifier_load_datafile) identifier_load_datafile )attribute (argument_list (identifier_name) identifier_name (identifier_search_path) identifier_search_path (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
find datafile and load them from codec
(module (function_definition (function_name_set_meta_rdf) function_name_set_meta_rdf (parameters (identifier_self) identifier_self (identifier_rdf) identifier_rdf (default_parameter (identifier_fmt) identifier_fmt (string_'n3') string_'n3' )default_parameter )parameters (block (expression_statement (assignment (identifier_evt) identifier_evt (call (attribute (attribute (identifier_self) identifier_self (identifier__client) identifier__client )attribute (identifier__request_point_meta_set) identifier__request_point_meta_set )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__type) identifier__type )attribute (attribute (identifier_self) identifier_self (identifier___lid) identifier___lid )attribute (attribute (identifier_self) identifier_self (identifier___pid) identifier___pid )attribute (identifier_rdf) identifier_rdf (keyword_argument (identifier_fmt) identifier_fmt (identifier_fmt) identifier_fmt )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__client) identifier__client )attribute (identifier__wait_and_except_if_failed) identifier__wait_and_except_if_failed )attribute (argument_list (identifier_evt) identifier_evt )argument_list )call )expression_statement )block )function_definition )module
Set the metadata for this Point in rdf fmt
(module (function_definition (function_name_add_reward_function) function_name_add_reward_function (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_reward_function) identifier_reward_function (subscript (attribute (identifier_self) identifier_self (identifier_model) identifier_model )attribute (string_'reward_function') string_'reward_function' )subscript )assignment )expression_statement (for_statement (identifier_condition) identifier_condition (identifier_reward_function) identifier_reward_function (block (expression_statement (assignment (identifier_condprob) identifier_condprob (call (attribute (identifier_etree) identifier_etree (identifier_SubElement) identifier_SubElement )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_reward_function) identifier_reward_function )attribute (string_'Func') string_'Func' )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_conditions) identifier_add_conditions )attribute (argument_list (identifier_condition) identifier_condition (identifier_condprob) identifier_condprob )argument_list )call )expression_statement )block )for_statement (return_statement (subscript (call (attribute (identifier_self) identifier_self (identifier___str__) identifier___str__ )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_reward_function) identifier_reward_function )attribute )argument_list )call (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )return_statement )block )function_definition )module
add reward function tag to pomdpx model Return --------------- string containing the xml for reward function tag
(module (function_definition (function_name_encode) function_name_encode (parameters (identifier_self) identifier_self )parameters (block (return_statement (binary_operator (binary_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_attrs) identifier_attrs )attribute (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_delay) identifier_delay )attribute (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call )binary_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_cmd) identifier_cmd )attribute (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call )binary_operator )return_statement )block )function_definition )module
Encodes this SeqCmd to binary and returns a bytearray.
(module (function_definition (function_name_qstat) function_name_qstat (parameters (identifier_jobid) identifier_jobid (default_parameter (identifier_context) identifier_context (string_'grid') string_'grid' )default_parameter )parameters (block (expression_statement (assignment (identifier_scmd) identifier_scmd (list (string_'qstat') string_'qstat' (string_'-j') string_'-j' (binary_operator (string_'%d') string_'%d' (identifier_jobid) identifier_jobid )binary_operator (string_'-f') string_'-f' )list )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (string_"Qstat command '%s'") string_"Qstat command '%s'" (call (attribute (string_' ') string_' ' (identifier_join) identifier_join )attribute (argument_list (identifier_scmd) identifier_scmd )argument_list )call )argument_list )call )expression_statement (import_from_statement (relative_import (import_prefix )import_prefix (dotted_name (identifier_setshell) identifier_setshell )dotted_name )relative_import (dotted_name (identifier_sexec) identifier_sexec )dotted_name )import_from_statement (expression_statement (assignment (identifier_data) identifier_data (call (identifier_str_) identifier_str_ (argument_list (call (identifier_sexec) identifier_sexec (argument_list (identifier_context) identifier_context (identifier_scmd) identifier_scmd (keyword_argument (identifier_error_on_nonzero) identifier_error_on_nonzero (False) False )keyword_argument )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_retval) identifier_retval (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_line) identifier_line (call (attribute (identifier_data) identifier_data (identifier_split) identifier_split )attribute (argument_list (string_'\n') string_'\n' )argument_list )call (block (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_line) identifier_line (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (attribute (call (attribute (identifier_s) identifier_s (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (identifier_find) identifier_find )attribute (argument_list (string_'do not exist') string_'do not exist' )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator (block (return_statement (dictionary )dictionary )return_statement )block )if_statement (if_statement (boolean_operator (not_operator (identifier_s) identifier_s )not_operator (comparison_operator (call (attribute (identifier_s) identifier_s (identifier_find) identifier_find )attribute (argument_list (binary_operator (integer_10) integer_10 (string_'=') string_'=' )binary_operator )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_kv) identifier_kv (call (attribute (identifier_QSTAT_FIELD_SEPARATOR) identifier_QSTAT_FIELD_SEPARATOR (identifier_split) identifier_split )attribute (argument_list (identifier_s) identifier_s (integer_1) integer_1 )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_kv) identifier_kv )argument_list )call (integer_2) integer_2 )comparison_operator (block (expression_statement (assignment (subscript (identifier_retval) identifier_retval (subscript (identifier_kv) identifier_kv (integer_0) integer_0 )subscript )subscript (subscript (identifier_kv) identifier_kv (integer_1) integer_1 )subscript )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_retval) identifier_retval )return_statement )block )function_definition )module
Queries status of a given job. Keyword parameters: jobid The job identifier as returned by qsub() context The setshell context in which we should try a 'qsub'. Normally you don't need to change the default. This variable can also be set to a context dictionary in which case we just setup using that context instead of probing for a new one, what can be fast. Returns a dictionary with the specific job properties
(module (function_definition (function_name_spa_length_in_time) function_name_spa_length_in_time (parameters (dictionary_splat_pattern (identifier_kwds) identifier_kwds )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_m1) identifier_m1 (subscript (identifier_kwds) identifier_kwds (string_'mass1') string_'mass1' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_m2) identifier_m2 (subscript (identifier_kwds) identifier_kwds (string_'mass2') string_'mass2' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_flow) identifier_flow (subscript (identifier_kwds) identifier_kwds (string_'f_lower') string_'f_lower' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_porder) identifier_porder (call (identifier_int) identifier_int (argument_list (subscript (identifier_kwds) identifier_kwds (string_'phase_order') string_'phase_order' )subscript )argument_list )call )assignment )expression_statement (return_statement (call (identifier_findchirp_chirptime) identifier_findchirp_chirptime (argument_list (identifier_m1) identifier_m1 (identifier_m2) identifier_m2 (identifier_flow) identifier_flow (identifier_porder) identifier_porder )argument_list )call )return_statement )block )function_definition )module
Returns the length in time of the template, based on the masses, PN order, and low-frequency cut-off.
(module (function_definition (function_name_delete_api_key) function_name_delete_api_key (parameters (identifier_self) identifier_self (identifier_api_key_id) identifier_api_key_id )parameters (block (expression_statement (assignment (identifier_api) identifier_api (call (attribute (identifier_self) identifier_self (identifier__get_api) identifier__get_api )attribute (argument_list (attribute (identifier_iam) identifier_iam (identifier_DeveloperApi) identifier_DeveloperApi )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_api) identifier_api (identifier_delete_api_key) identifier_delete_api_key )attribute (argument_list (identifier_api_key_id) identifier_api_key_id )argument_list )call )expression_statement (return_statement )return_statement )block )function_definition )module
Delete an API key registered in the organisation. :param str api_key_id: The ID of the API key (Required) :returns: void
(module (function_definition (function_name_remove) function_name_remove (parameters (identifier_self) identifier_self (identifier_item) identifier_item )parameters (block (expression_statement (call (identifier_check_not_none) identifier_check_not_none (argument_list (identifier_item) identifier_item (string_"Value can't be None") string_"Value can't be None" )argument_list )call )expression_statement (expression_statement (assignment (identifier_item_data) identifier_item_data (call (attribute (identifier_self) identifier_self (identifier__to_data) identifier__to_data )attribute (argument_list (identifier_item) identifier_item )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__encode_invoke) identifier__encode_invoke )attribute (argument_list (identifier_list_remove_codec) identifier_list_remove_codec (keyword_argument (identifier_value) identifier_value (identifier_item_data) identifier_item_data )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Removes the specified element's first occurrence from the list if it exists in this list. :param item: (object), the specified element. :return: (bool), ``true`` if the specified element is present in this list.
(module (function_definition (function_name__scale_tensor) function_name__scale_tensor (parameters (identifier_tensor) identifier_tensor (identifier_range_min) identifier_range_min (identifier_range_max) identifier_range_max (identifier_scale_min) identifier_scale_min (identifier_scale_max) identifier_scale_max )parameters (block (if_statement (comparison_operator (identifier_range_min) identifier_range_min (identifier_range_max) identifier_range_max )comparison_operator (block (return_statement (identifier_tensor) identifier_tensor )return_statement )block )if_statement (expression_statement (assignment (identifier_float_tensor) identifier_float_tensor (call (attribute (identifier_tf) identifier_tf (identifier_to_float) identifier_to_float )attribute (argument_list (identifier_tensor) identifier_tensor )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_scaled_tensor) identifier_scaled_tensor (call (attribute (identifier_tf) identifier_tf (identifier_divide) identifier_divide )attribute (argument_list (parenthesized_expression (binary_operator (call (attribute (identifier_tf) identifier_tf (identifier_subtract) identifier_subtract )attribute (argument_list (identifier_float_tensor) identifier_float_tensor (identifier_range_min) identifier_range_min )argument_list )call (call (attribute (identifier_tf) identifier_tf (identifier_constant) identifier_constant )attribute (argument_list (call (identifier_float) identifier_float (argument_list (binary_operator (identifier_scale_max) identifier_scale_max (identifier_scale_min) identifier_scale_min )binary_operator )argument_list )call )argument_list )call )binary_operator )parenthesized_expression (call (attribute (identifier_tf) identifier_tf (identifier_constant) identifier_constant )attribute (argument_list (call (identifier_float) identifier_float (argument_list (binary_operator (identifier_range_max) identifier_range_max (identifier_range_min) identifier_range_min )binary_operator )argument_list )call )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_shifted_tensor) identifier_shifted_tensor (binary_operator (identifier_scaled_tensor) identifier_scaled_tensor (call (attribute (identifier_tf) identifier_tf (identifier_constant) identifier_constant )attribute (argument_list (call (identifier_float) identifier_float (argument_list (identifier_scale_min) identifier_scale_min )argument_list )call )argument_list )call )binary_operator )assignment )expression_statement (return_statement (identifier_shifted_tensor) identifier_shifted_tensor )return_statement )block )function_definition )module
Scale a tensor to scale_min to scale_max. Args: tensor: input tensor. Should be a numerical tensor. range_min: min expected value for this feature/tensor. range_max: max expected Value. scale_min: new expected min value. scale_max: new expected max value. Returns: scaled tensor.
(module (function_definition (function_name_function) function_name_function (parameters (identifier_self) identifier_self (identifier_function_name) identifier_function_name (identifier_word) identifier_word )parameters (block (expression_statement (assignment (identifier_word) identifier_word (call (attribute (identifier_self) identifier_self (identifier__parse_filter_word) identifier__parse_filter_word )attribute (argument_list (identifier_word) identifier_word )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__add_filter) identifier__add_filter )attribute (argument_list (list_splat (call (attribute (identifier_self) identifier_self (identifier__prepare_function) identifier__prepare_function )attribute (argument_list (identifier_function_name) identifier_function_name (attribute (identifier_self) identifier_self (identifier__attribute) identifier__attribute )attribute (identifier_word) identifier_word (attribute (identifier_self) identifier_self (identifier__negation) identifier__negation )attribute )argument_list )call )list_splat )argument_list )call )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Apply a function on given word :param str function_name: function to apply :param str word: word to apply function on :rtype: Query
(module (function_definition (function_name_run) function_name_run (parameters (identifier_self) identifier_self (default_parameter (identifier_once) identifier_once (False) False )default_parameter )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__once) identifier__once )attribute (identifier_once) identifier_once )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (while_statement (attribute (identifier_self) identifier_self (identifier_running) identifier_running )attribute (block (try_statement (block (expression_statement (call (attribute (identifier_time) identifier_time (identifier_sleep) identifier_sleep )attribute (argument_list (float_1.0) float_1.0 )argument_list )call )expression_statement )block (except_clause (identifier_KeyboardInterrupt) identifier_KeyboardInterrupt (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_stop) identifier_stop )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_join) identifier_join )attribute (argument_list )argument_list )call )expression_statement )block )except_clause )try_statement )block )while_statement )block )function_definition )module
Runs the reactor in the main thread.
(module (function_definition (function_name_getStats) function_name_getStats (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_stats) identifier_stats (call (attribute (identifier_protocol) identifier_protocol (identifier_ReadStats) identifier_ReadStats )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_stats) identifier_stats (identifier_aligned_read_count) identifier_aligned_read_count )attribute (call (attribute (identifier_self) identifier_self (identifier_getNumAlignedReads) identifier_getNumAlignedReads )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_stats) identifier_stats (identifier_unaligned_read_count) identifier_unaligned_read_count )attribute (call (attribute (identifier_self) identifier_self (identifier_getNumUnalignedReads) identifier_getNumUnalignedReads )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (identifier_stats) identifier_stats )return_statement )block )function_definition )module
Returns the GA4GH protocol representation of this read group's ReadStats.
(module (function_definition (function_name_send) function_name_send (parameters (identifier_self) identifier_self (default_parameter (identifier_auth_header) identifier_auth_header (None) None )default_parameter (default_parameter (identifier_callback) identifier_callback (None) None )default_parameter (dictionary_splat_pattern (identifier_data) identifier_data )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_message) identifier_message (call (attribute (identifier_self) identifier_self (identifier_encode) identifier_encode )attribute (argument_list (identifier_data) identifier_data )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_send_encoded) identifier_send_encoded )attribute (argument_list (identifier_message) identifier_message (keyword_argument (identifier_auth_header) identifier_auth_header (identifier_auth_header) identifier_auth_header )keyword_argument (keyword_argument (identifier_callback) identifier_callback (identifier_callback) identifier_callback )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Serializes the message and passes the payload onto ``send_encoded``.
(module (function_definition (function_name_make_global_and_nonlocal_decls) function_name_make_global_and_nonlocal_decls (parameters (identifier_code_instrs) identifier_code_instrs )parameters (block (expression_statement (assignment (identifier_globals_) identifier_globals_ (call (identifier_sorted) identifier_sorted (argument_list (call (identifier_set) identifier_set (generator_expression (attribute (identifier_i) identifier_i (identifier_arg) identifier_arg )attribute (for_in_clause (identifier_i) identifier_i (identifier_code_instrs) identifier_code_instrs )for_in_clause (if_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_i) identifier_i (attribute (identifier_instrs) identifier_instrs (identifier_STORE_GLOBAL) identifier_STORE_GLOBAL )attribute )argument_list )call )if_clause )generator_expression )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_nonlocals) identifier_nonlocals (call (identifier_sorted) identifier_sorted (argument_list (call (identifier_set) identifier_set (generator_expression (attribute (identifier_i) identifier_i (identifier_arg) identifier_arg )attribute (for_in_clause (identifier_i) identifier_i (identifier_code_instrs) identifier_code_instrs )for_in_clause (if_clause (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_i) identifier_i (attribute (identifier_instrs) identifier_instrs (identifier_STORE_DEREF) identifier_STORE_DEREF )attribute )argument_list )call (comparison_operator (attribute (identifier_i) identifier_i (identifier_vartype) identifier_vartype )attribute (string_'free') string_'free' )comparison_operator )boolean_operator )if_clause )generator_expression )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_out) identifier_out (list )list )assignment )expression_statement (if_statement (identifier_globals_) identifier_globals_ (block (expression_statement (call (attribute (identifier_out) identifier_out (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_ast) identifier_ast (identifier_Global) identifier_Global )attribute (argument_list (keyword_argument (identifier_names) identifier_names (identifier_globals_) identifier_globals_ )keyword_argument )argument_list )call )argument_list )call )expression_statement )block )if_statement (if_statement (identifier_nonlocals) identifier_nonlocals (block (expression_statement (call (attribute (identifier_out) identifier_out (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_ast) identifier_ast (identifier_Nonlocal) identifier_Nonlocal )attribute (argument_list (keyword_argument (identifier_names) identifier_names (identifier_nonlocals) identifier_nonlocals )keyword_argument )argument_list )call )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_out) identifier_out )return_statement )block )function_definition )module
Find all STORE_GLOBAL and STORE_DEREF instructions in `instrs` and convert them into a canonical list of `ast.Global` and `ast.Nonlocal` declarations.
(module (function_definition (function_name_info) function_name_info (parameters (identifier_args) identifier_args )parameters (block (expression_statement (assignment (identifier_session) identifier_session (call (attribute (identifier_c) identifier_c (identifier_Session) identifier_Session )attribute (argument_list (identifier_args) identifier_args )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_"all") string_"all" (subscript (identifier_args) identifier_args (string_"names") string_"names" )subscript )comparison_operator (block (expression_statement (assignment (identifier_feeds) identifier_feeds (call (attribute (identifier_session) identifier_session (identifier_list_feeds) identifier_list_feeds )attribute (argument_list )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_feeds) identifier_feeds (subscript (identifier_args) identifier_args (string_"names") string_"names" )subscript )assignment )expression_statement )block )else_clause )if_statement (for_statement (identifier_feed) identifier_feed (identifier_feeds) identifier_feeds (block (expression_statement (call (attribute (identifier_aux) identifier_aux (identifier_pretty_print) identifier_pretty_print )attribute (argument_list (identifier_session) identifier_session (identifier_feed) identifier_feed )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Provide information of a number of feeds
(module (function_definition (function_name_load_migration_file) function_name_load_migration_file (parameters (identifier_self) identifier_self (identifier_filename) identifier_filename )parameters (block (expression_statement (assignment (identifier_path) identifier_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_directory) identifier_directory )attribute (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_module) identifier_module (call (attribute (identifier_imp) identifier_imp (identifier_load_source) identifier_load_source )attribute (argument_list (string_"migration") string_"migration" (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (return_statement (identifier_module) identifier_module )return_statement )block )function_definition )module
Load migration file as module.
(module (function_definition (function_name_render) function_name_render (parameters (identifier_self) identifier_self (identifier_container) identifier_container (default_parameter (identifier_rerender) identifier_rerender (False) False )default_parameter )parameters (block (if_statement (identifier_rerender) identifier_rerender (block (expression_statement (call (attribute (identifier_container) identifier_container (identifier_clear) identifier_clear )attribute (argument_list )argument_list )call )expression_statement (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier__rerendering) identifier__rerendering )attribute )not_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute (call (identifier_copy) identifier_copy (argument_list (attribute (identifier_self) identifier_self (identifier__fresh_page_state) identifier__fresh_page_state )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__rerendering) identifier__rerendering )attribute (True) True )assignment )expression_statement )block )if_statement )block )if_statement (try_statement (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_done) identifier_done )attribute (False) False )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_flowables) identifier_flowables )attribute (identifier_flow) identifier_flow )attribute (argument_list (identifier_container) identifier_container (keyword_argument (identifier_last_descender) identifier_last_descender (None) None )keyword_argument (keyword_argument (identifier_state) identifier_state (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute )keyword_argument )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_container) identifier_container (attribute (identifier_self) identifier_self (identifier_last_container) identifier_last_container )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__init_state) identifier__init_state )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_done) identifier_done )attribute (True) True )assignment )expression_statement )block (except_clause (as_pattern (identifier_PageBreakException) identifier_PageBreakException (as_pattern_target (identifier_exc) identifier_exc )as_pattern_target )as_pattern (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute (attribute (identifier_exc) identifier_exc (identifier_flowable_state) identifier_flowable_state )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__fresh_page_state) identifier__fresh_page_state )attribute (call (identifier_copy) identifier_copy (argument_list (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute )argument_list )call )assignment )expression_statement (raise_statement )raise_statement )block )except_clause (except_clause (as_pattern (identifier_EndOfContainer) identifier_EndOfContainer (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute (attribute (identifier_e) identifier_e (identifier_flowable_state) identifier_flowable_state )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_container) identifier_container (attribute (identifier_self) identifier_self (identifier_last_container) identifier_last_container )attribute )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__fresh_page_state) identifier__fresh_page_state )attribute (call (identifier_copy) identifier_copy (argument_list (attribute (identifier_self) identifier_self (identifier__state) identifier__state )attribute )argument_list )call )assignment )expression_statement )block )if_statement )block )except_clause (except_clause (identifier_ReflowRequired) identifier_ReflowRequired (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__rerendering) identifier__rerendering )attribute (False) False )assignment )expression_statement (raise_statement )raise_statement )block )except_clause )try_statement )block )function_definition )module
Flow the flowables into the containers that have been added to this chain.
(module (function_definition (function_name_get_first_webview_context) function_name_get_first_webview_context (parameters (identifier_self) identifier_self )parameters (block (for_statement (identifier_context) identifier_context (attribute (attribute (attribute (identifier_self) identifier_self (identifier_driver_wrapper) identifier_driver_wrapper )attribute (identifier_driver) identifier_driver )attribute (identifier_contexts) identifier_contexts )attribute (block (if_statement (call (attribute (identifier_context) identifier_context (identifier_startswith) identifier_startswith )attribute (argument_list (string_'WEBVIEW') string_'WEBVIEW' )argument_list )call (block (return_statement (identifier_context) identifier_context )return_statement )block )if_statement )block )for_statement (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_'No WEBVIEW context has been found') string_'No WEBVIEW context has been found' )argument_list )call )raise_statement )block )function_definition )module
Return the first WEBVIEW context or raise an exception if it is not found :returns: first WEBVIEW context
(module (function_definition (function_name_normal_meanvar) function_name_normal_meanvar (parameters (identifier_data) identifier_data )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_np) identifier_np (identifier_hstack) identifier_hstack )attribute (argument_list (tuple (list (float_0.0) float_0.0 )list (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_data) identifier_data )argument_list )call )tuple )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cumm) identifier_cumm (call (attribute (identifier_np) identifier_np (identifier_cumsum) identifier_cumsum )attribute (argument_list (identifier_data) identifier_data )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cumm_sq) identifier_cumm_sq (call (attribute (identifier_np) identifier_np (identifier_cumsum) identifier_cumsum )attribute (argument_list (list_comprehension (binary_operator (identifier_val) identifier_val (integer_2) integer_2 )binary_operator (for_in_clause (identifier_val) identifier_val (identifier_data) identifier_data )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (function_definition (function_name_cost) function_name_cost (parameters (identifier_s) identifier_s (identifier_t) identifier_t )parameters (block (expression_statement (assignment (identifier_ts_i) identifier_ts_i (binary_operator (float_1.0) float_1.0 (parenthesized_expression (binary_operator (identifier_t) identifier_t (identifier_s) identifier_s )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_mu) identifier_mu (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_cumm) identifier_cumm (identifier_t) identifier_t )subscript (subscript (identifier_cumm) identifier_cumm (identifier_s) identifier_s )subscript )binary_operator )parenthesized_expression (identifier_ts_i) identifier_ts_i )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_sig) identifier_sig (binary_operator (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_cumm_sq) identifier_cumm_sq (identifier_t) identifier_t )subscript (subscript (identifier_cumm_sq) identifier_cumm_sq (identifier_s) identifier_s )subscript )binary_operator )parenthesized_expression (identifier_ts_i) identifier_ts_i )binary_operator (binary_operator (identifier_mu) identifier_mu (integer_2) integer_2 )binary_operator )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_sig_i) identifier_sig_i (binary_operator (float_1.0) float_1.0 (identifier_sig) identifier_sig )binary_operator )assignment )expression_statement (return_statement (binary_operator (binary_operator (binary_operator (binary_operator (parenthesized_expression (binary_operator (identifier_t) identifier_t (identifier_s) identifier_s )binary_operator )parenthesized_expression (call (attribute (identifier_np) identifier_np (identifier_log) identifier_log )attribute (argument_list (identifier_sig) identifier_sig )argument_list )call )binary_operator (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_cumm_sq) identifier_cumm_sq (identifier_t) identifier_t )subscript (subscript (identifier_cumm_sq) identifier_cumm_sq (identifier_s) identifier_s )subscript )binary_operator )parenthesized_expression (identifier_sig_i) identifier_sig_i )binary_operator )binary_operator (binary_operator (binary_operator (binary_operator (integer_2) integer_2 (parenthesized_expression (binary_operator (subscript (identifier_cumm) identifier_cumm (identifier_t) identifier_t )subscript (subscript (identifier_cumm) identifier_cumm (identifier_s) identifier_s )subscript )binary_operator )parenthesized_expression )binary_operator (identifier_mu) identifier_mu )binary_operator (identifier_sig_i) identifier_sig_i )binary_operator )binary_operator (binary_operator (parenthesized_expression (binary_operator (parenthesized_expression (binary_operator (identifier_t) identifier_t (identifier_s) identifier_s )binary_operator )parenthesized_expression (binary_operator (identifier_mu) identifier_mu (integer_2) integer_2 )binary_operator )binary_operator )parenthesized_expression (identifier_sig_i) identifier_sig_i )binary_operator )binary_operator )return_statement )block )function_definition (return_statement (identifier_cost) identifier_cost )return_statement )block )function_definition )module
Creates a segment cost function for a time series with a Normal distribution with changing mean and variance Args: data (:obj:`list` of float): 1D time series data Returns: function: Function with signature (int, int) -> float where the first arg is the starting index, and the second is the last arg. Returns the cost of that segment
(module (function_definition (function_name_on_redis_error) function_name_on_redis_error (parameters (identifier_self) identifier_self (identifier_fname) identifier_fname (identifier_exc_type) identifier_exc_type (identifier_exc_value) identifier_exc_value )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_shared_client) identifier_shared_client )attribute (block (expression_statement (assignment (attribute (identifier_Storage) identifier_Storage (identifier_storage) identifier_storage )attribute (None) None )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_storage) identifier_storage )attribute (None) None )assignment )expression_statement )block )else_clause )if_statement (if_statement (comparison_operator (attribute (attribute (attribute (identifier_self) identifier_self (identifier_context) identifier_context )attribute (identifier_config) identifier_config )attribute (identifier_REDIS_STORAGE_IGNORE_ERRORS) identifier_REDIS_STORAGE_IGNORE_ERRORS )attribute (True) True )comparison_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_error) identifier_error )attribute (argument_list (binary_operator (string_"[REDIS_STORAGE] %s") string_"[REDIS_STORAGE] %s" (identifier_exc_value) identifier_exc_value )binary_operator )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_fname) identifier_fname (string_'_exists') string_'_exists' )comparison_operator (block (return_statement (False) False )return_statement )block )if_statement (return_statement (None) None )return_statement )block (else_clause (block (raise_statement (identifier_exc_value) identifier_exc_value )raise_statement )block )else_clause )if_statement )block )function_definition )module
Callback executed when there is a redis error. :param string fname: Function name that was being called. :param type exc_type: Exception type :param Exception exc_value: The current exception :returns: Default value or raise the current exception
(module (function_definition (function_name_has_next) function_name_has_next (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (expression_statement (assignment (identifier_next_item) identifier_next_item (subscript (attribute (attribute (identifier_self) identifier_self (identifier_paginator) identifier_paginator )attribute (identifier_object_list) identifier_object_list )attribute (attribute (attribute (identifier_self) identifier_self (identifier_paginator) identifier_paginator )attribute (identifier_per_page) identifier_per_page )attribute )subscript )assignment )expression_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (return_statement (False) False )return_statement )block )except_clause )try_statement (return_statement (True) True )return_statement )block )function_definition )module
Checks for one more item than last on this page.
(module (function_definition (function_name_add_isosurface_grid_data) function_name_add_isosurface_grid_data (parameters (identifier_self) identifier_self (identifier_data) identifier_data (identifier_origin) identifier_origin (identifier_extent) identifier_extent (identifier_resolution) identifier_resolution (default_parameter (identifier_isolevel) identifier_isolevel (float_0.3) float_0.3 )default_parameter (default_parameter (identifier_scale) identifier_scale (integer_10) integer_10 )default_parameter (default_parameter (identifier_style) identifier_style (string_"wireframe") string_"wireframe" )default_parameter (default_parameter (identifier_color) identifier_color (integer_0xffffff) integer_0xffffff )default_parameter )parameters (block (expression_statement (assignment (identifier_spacing) identifier_spacing (binary_operator (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (binary_operator (identifier_extent) identifier_extent (identifier_resolution) identifier_resolution )binary_operator )argument_list )call (identifier_scale) identifier_scale )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_isolevel) identifier_isolevel (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (identifier_triangles) identifier_triangles (call (identifier_marching_cubes) identifier_marching_cubes (argument_list (identifier_data) identifier_data (identifier_isolevel) identifier_isolevel )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_triangles) identifier_triangles (call (identifier_marching_cubes) identifier_marching_cubes (argument_list (unary_operator (identifier_data) identifier_data )unary_operator (unary_operator (identifier_isolevel) identifier_isolevel )unary_operator )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_faces) identifier_faces (list )list )assignment )expression_statement (expression_statement (assignment (identifier_verts) identifier_verts (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_t) identifier_t )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_triangles) identifier_triangles )argument_list )call (block (expression_statement (call (attribute (identifier_faces) identifier_faces (identifier_append) identifier_append )attribute (argument_list (list (binary_operator (identifier_i) identifier_i (integer_3) integer_3 )binary_operator (binary_operator (binary_operator (identifier_i) identifier_i (integer_3) integer_3 )binary_operator (integer_1) integer_1 )binary_operator (binary_operator (binary_operator (identifier_i) identifier_i (integer_3) integer_3 )binary_operator (integer_2) integer_2 )binary_operator )list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_verts) identifier_verts (identifier_extend) identifier_extend )attribute (argument_list (identifier_t) identifier_t )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_faces) identifier_faces (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_faces) identifier_faces )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_verts) identifier_verts (binary_operator (binary_operator (identifier_origin) identifier_origin (binary_operator (identifier_spacing) identifier_spacing (integer_2) integer_2 )binary_operator )binary_operator (binary_operator (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_verts) identifier_verts )argument_list )call (identifier_spacing) identifier_spacing )binary_operator )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_rep_id) identifier_rep_id (call (attribute (identifier_self) identifier_self (identifier_add_representation) identifier_add_representation )attribute (argument_list (string_'surface') string_'surface' (dictionary (pair (string_'verts') string_'verts' (call (attribute (identifier_verts) identifier_verts (identifier_astype) identifier_astype )attribute (argument_list (string_'float32') string_'float32' )argument_list )call )pair (pair (string_'faces') string_'faces' (call (attribute (identifier_faces) identifier_faces (identifier_astype) identifier_astype )attribute (argument_list (string_'int32') string_'int32' )argument_list )call )pair (pair (string_'style') string_'style' (identifier_style) identifier_style )pair (pair (string_'color') string_'color' (identifier_color) identifier_color )pair )dictionary )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_autozoom) identifier_autozoom )attribute (argument_list (identifier_verts) identifier_verts )argument_list )call )expression_statement )block )function_definition )module
Add an isosurface to current scence using pre-computed data on a grid
(module (function_definition (function_name_generate) function_name_generate (parameters (identifier_env) identifier_env )parameters (block (global_statement (identifier_PDFTeXAction) identifier_PDFTeXAction )global_statement (if_statement (comparison_operator (identifier_PDFTeXAction) identifier_PDFTeXAction (None) None )comparison_operator (block (expression_statement (assignment (identifier_PDFTeXAction) identifier_PDFTeXAction (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Action) identifier_Action )attribute (identifier_Action) identifier_Action )attribute (argument_list (string_'$PDFTEXCOM') string_'$PDFTEXCOM' (string_'$PDFTEXCOMSTR') string_'$PDFTEXCOMSTR' )argument_list )call )assignment )expression_statement )block )if_statement (global_statement (identifier_PDFLaTeXAction) identifier_PDFLaTeXAction )global_statement (if_statement (comparison_operator (identifier_PDFLaTeXAction) identifier_PDFLaTeXAction (None) None )comparison_operator (block (expression_statement (assignment (identifier_PDFLaTeXAction) identifier_PDFLaTeXAction (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Action) identifier_Action )attribute (identifier_Action) identifier_Action )attribute (argument_list (string_"$PDFLATEXCOM") string_"$PDFLATEXCOM" (string_"$PDFLATEXCOMSTR") string_"$PDFLATEXCOMSTR" )argument_list )call )assignment )expression_statement )block )if_statement (global_statement (identifier_PDFTeXLaTeXAction) identifier_PDFTeXLaTeXAction )global_statement (if_statement (comparison_operator (identifier_PDFTeXLaTeXAction) identifier_PDFTeXLaTeXAction (None) None )comparison_operator (block (expression_statement (assignment (identifier_PDFTeXLaTeXAction) identifier_PDFTeXLaTeXAction (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Action) identifier_Action )attribute (identifier_Action) identifier_Action )attribute (argument_list (identifier_PDFTeXLaTeXFunction) identifier_PDFTeXLaTeXFunction (keyword_argument (identifier_strfunction) identifier_strfunction (attribute (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Tool) identifier_Tool )attribute (identifier_tex) identifier_tex )attribute (identifier_TeXLaTeXStrFunction) identifier_TeXLaTeXStrFunction )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_env) identifier_env (identifier_AppendUnique) identifier_AppendUnique )attribute (argument_list (keyword_argument (identifier_LATEXSUFFIXES) identifier_LATEXSUFFIXES (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Tool) identifier_Tool )attribute (identifier_LaTeXSuffixes) identifier_LaTeXSuffixes )attribute )keyword_argument )argument_list )call )expression_statement (import_from_statement (relative_import (import_prefix )import_prefix )relative_import (dotted_name (identifier_pdf) identifier_pdf )dotted_name )import_from_statement (expression_statement (call (attribute (identifier_pdf) identifier_pdf (identifier_generate) identifier_generate )attribute (argument_list (identifier_env) identifier_env )argument_list )call )expression_statement (expression_statement (assignment (identifier_bld) identifier_bld (subscript (subscript (identifier_env) identifier_env (string_'BUILDERS') string_'BUILDERS' )subscript (string_'PDF') string_'PDF' )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_bld) identifier_bld (identifier_add_action) identifier_add_action )attribute (argument_list (string_'.tex') string_'.tex' (identifier_PDFTeXLaTeXAction) identifier_PDFTeXLaTeXAction )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_bld) identifier_bld (identifier_add_emitter) identifier_add_emitter )attribute (argument_list (string_'.tex') string_'.tex' (attribute (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Tool) identifier_Tool )attribute (identifier_tex) identifier_tex )attribute (identifier_tex_pdf_emitter) identifier_tex_pdf_emitter )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_pdf) identifier_pdf (identifier_generate2) identifier_generate2 )attribute (argument_list (identifier_env) identifier_env )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Tool) identifier_Tool )attribute (identifier_tex) identifier_tex )attribute (identifier_generate_common) identifier_generate_common )attribute (argument_list (identifier_env) identifier_env )argument_list )call )expression_statement )block )function_definition )module
Add Builders and construction variables for pdftex to an Environment.
(module (function_definition (function_name__plugin_get) function_name__plugin_get (parameters (identifier_self) identifier_self (identifier_plugin_name) identifier_plugin_name )parameters (block (if_statement (not_operator (identifier_plugin_name) identifier_plugin_name )not_operator (block (return_statement (expression_list (None) None (string_u"Plugin name not set") string_u"Plugin name not set" )expression_list )return_statement )block )if_statement (for_statement (identifier_plugin) identifier_plugin (attribute (attribute (identifier_self) identifier_self (identifier_controller) identifier_controller )attribute (identifier_plugins) identifier_plugins )attribute (block (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_plugin) identifier_plugin (identifier_SettablePlugin) identifier_SettablePlugin )argument_list )call )not_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_plugin) identifier_plugin (identifier_name) identifier_name )attribute (identifier_plugin_name) identifier_plugin_name )comparison_operator (block (return_statement (expression_list (identifier_plugin) identifier_plugin (string_"") string_"" )expression_list )return_statement )block )if_statement )block )for_statement (return_statement (expression_list (None) None (call (attribute (string_u"Settable plugin '{}' not found") string_u"Settable plugin '{}' not found" (identifier_format) identifier_format )attribute (argument_list (identifier_plugin_name) identifier_plugin_name )argument_list )call )expression_list )return_statement )block )function_definition )module
Find plugins in controller :param plugin_name: Name of the plugin to find :type plugin_name: str | None :return: Plugin or None and error message :rtype: (settable_plugin.SettablePlugin | None, str)
(module (function_definition (function_name__item_to_bucket) function_name__item_to_bucket (parameters (identifier_iterator) identifier_iterator (identifier_item) identifier_item )parameters (block (expression_statement (assignment (identifier_name) identifier_name (call (attribute (identifier_item) identifier_item (identifier_get) identifier_get )attribute (argument_list (string_"name") string_"name" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_bucket) identifier_bucket (call (identifier_Bucket) identifier_Bucket (argument_list (attribute (identifier_iterator) identifier_iterator (identifier_client) identifier_client )attribute (identifier_name) identifier_name )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_bucket) identifier_bucket (identifier__set_properties) identifier__set_properties )attribute (argument_list (identifier_item) identifier_item )argument_list )call )expression_statement (return_statement (identifier_bucket) identifier_bucket )return_statement )block )function_definition )module
Convert a JSON bucket to the native object. :type iterator: :class:`~google.api_core.page_iterator.Iterator` :param iterator: The iterator that has retrieved the item. :type item: dict :param item: An item to be converted to a bucket. :rtype: :class:`.Bucket` :returns: The next bucket in the page.
(module (function_definition (function_name_set_config_variables) function_name_set_config_variables (parameters (identifier_repo) identifier_repo (identifier_variables) identifier_variables )parameters (block (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_repo) identifier_repo (identifier_config_writer) identifier_config_writer )attribute (argument_list )argument_list )call (as_pattern_target (identifier_writer) identifier_writer )as_pattern_target )as_pattern )with_item )with_clause (block (for_statement (pattern_list (identifier_k) identifier_k (identifier_value) identifier_value )pattern_list (call (attribute (identifier_variables) identifier_variables (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_section) identifier_section (identifier_option) identifier_option )pattern_list (call (attribute (identifier_k) identifier_k (identifier_split) identifier_split )attribute (argument_list (string_'.') string_'.' )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_writer) identifier_writer (identifier_set_value) identifier_set_value )attribute (argument_list (identifier_section) identifier_section (identifier_option) identifier_option (identifier_value) identifier_value )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_writer) identifier_writer (identifier_release) identifier_release )attribute (argument_list )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Set config variables Args: repo (git.Repo): repo variables (dict): entries of the form 'user.email': 'you@example.com'
(module (function_definition (function_name__addsub_offset_array) function_name__addsub_offset_array (parameters (identifier_self) identifier_self (identifier_other) identifier_other (identifier_op) identifier_op )parameters (block (assert_statement (comparison_operator (identifier_op) identifier_op (list (attribute (identifier_operator) identifier_operator (identifier_add) identifier_add )attribute (attribute (identifier_operator) identifier_operator (identifier_sub) identifier_sub )attribute )list )comparison_operator )assert_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_other) identifier_other )argument_list )call (integer_1) integer_1 )comparison_operator (block (return_statement (call (identifier_op) identifier_op (argument_list (identifier_self) identifier_self (subscript (identifier_other) identifier_other (integer_0) integer_0 )subscript )argument_list )call )return_statement )block )if_statement (expression_statement (call (attribute (identifier_warnings) identifier_warnings (identifier_warn) identifier_warn )attribute (argument_list (call (attribute (concatenated_string (string_"Adding/subtracting array of DateOffsets to ") string_"Adding/subtracting array of DateOffsets to " (string_"{cls} not vectorized") string_"{cls} not vectorized" )concatenated_string (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_cls) identifier_cls (attribute (call (identifier_type) identifier_type (argument_list (identifier_self) identifier_self )argument_list )call (identifier___name__) identifier___name__ )attribute )keyword_argument )argument_list )call (identifier_PerformanceWarning) identifier_PerformanceWarning )argument_list )call )expression_statement (expression_statement (assignment (identifier_left) identifier_left (call (attribute (identifier_lib) identifier_lib (identifier_values_from_object) identifier_values_from_object )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier_astype) identifier_astype )attribute (argument_list (string_'O') string_'O' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_res_values) identifier_res_values (call (identifier_op) identifier_op (argument_list (identifier_left) identifier_left (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_other) identifier_other )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_kwargs) identifier_kwargs (dictionary )dictionary )assignment )expression_statement (if_statement (not_operator (call (identifier_is_period_dtype) identifier_is_period_dtype (argument_list (identifier_self) identifier_self )argument_list )call )not_operator (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'freq') string_'freq' )subscript (string_'infer') string_'infer' )assignment )expression_statement )block )if_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__from_sequence) identifier__from_sequence )attribute (argument_list (identifier_res_values) identifier_res_values (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Add or subtract array-like of DateOffset objects Parameters ---------- other : Index, np.ndarray object-dtype containing pd.DateOffset objects op : {operator.add, operator.sub} Returns ------- result : same class as self
(module (function_definition (function_name_list_dataset_uris) function_name_list_dataset_uris (parameters (identifier_cls) identifier_cls (identifier_base_uri) identifier_base_uri (identifier_config_path) identifier_config_path )parameters (block (expression_statement (assignment (identifier_parsed_uri) identifier_parsed_uri (call (identifier_generous_parse_uri) identifier_generous_parse_uri (argument_list (identifier_base_uri) identifier_base_uri )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_uri_list) identifier_uri_list (list )list )assignment )expression_statement (expression_statement (assignment (identifier_path) identifier_path (attribute (identifier_parsed_uri) identifier_parsed_uri (identifier_path) identifier_path )attribute )assignment )expression_statement (if_statement (identifier_IS_WINDOWS) identifier_IS_WINDOWS (block (expression_statement (assignment (identifier_path) identifier_path (call (identifier_unix_to_windows_path) identifier_unix_to_windows_path (argument_list (attribute (identifier_parsed_uri) identifier_parsed_uri (identifier_path) identifier_path )attribute (attribute (identifier_parsed_uri) identifier_parsed_uri (identifier_netloc) identifier_netloc )attribute )argument_list )call )assignment )expression_statement )block )if_statement (for_statement (identifier_d) identifier_d (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_path) identifier_path )argument_list )call (block (expression_statement (assignment (identifier_dir_path) identifier_dir_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_path) identifier_path (identifier_d) identifier_d )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isdir) identifier_isdir )attribute (argument_list (identifier_dir_path) identifier_dir_path )argument_list )call )not_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_storage_broker) identifier_storage_broker (call (identifier_cls) identifier_cls (argument_list (identifier_dir_path) identifier_dir_path (identifier_config_path) identifier_config_path )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (identifier_storage_broker) identifier_storage_broker (identifier_has_admin_metadata) identifier_has_admin_metadata )attribute (argument_list )argument_list )call )not_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_uri) identifier_uri (call (attribute (identifier_storage_broker) identifier_storage_broker (identifier_generate_uri) identifier_generate_uri )attribute (argument_list (keyword_argument (identifier_name) identifier_name (identifier_d) identifier_d )keyword_argument (keyword_argument (identifier_uuid) identifier_uuid (None) None )keyword_argument (keyword_argument (identifier_base_uri) identifier_base_uri (identifier_base_uri) identifier_base_uri )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_uri_list) identifier_uri_list (identifier_append) identifier_append )attribute (argument_list (identifier_uri) identifier_uri )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_uri_list) identifier_uri_list )return_statement )block )function_definition )module
Return list containing URIs in location given by base_uri.
(module (function_definition (function_name_cache_key_name) function_name_cache_key_name (parameters (identifier_cls) identifier_cls (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern )parameters (block (if_statement (comparison_operator (attribute (identifier_cls) identifier_cls (identifier_KEY_FIELDS) identifier_KEY_FIELDS )attribute (tuple )tuple )comparison_operator (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call (call (identifier_len) identifier_len (argument_list (attribute (identifier_cls) identifier_cls (identifier_KEY_FIELDS) identifier_KEY_FIELDS )attribute )argument_list )call )comparison_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (call (attribute (string_"cache_key_name() takes exactly {} arguments ({} given)") string_"cache_key_name() takes exactly {} arguments ({} given)" (identifier_format) identifier_format )attribute (argument_list (call (identifier_len) identifier_len (argument_list (attribute (identifier_cls) identifier_cls (identifier_KEY_FIELDS) identifier_KEY_FIELDS )attribute )argument_list )call (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call )argument_list )call )argument_list )call )raise_statement )block )if_statement (return_statement (call (attribute (string_'configuration/{}/current/{}') string_'configuration/{}/current/{}' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_cls) identifier_cls (identifier___name__) identifier___name__ )attribute (call (attribute (string_',') string_',' (identifier_join) identifier_join )attribute (generator_expression (call (attribute (identifier_six) identifier_six (identifier_text_type) identifier_text_type )attribute (argument_list (identifier_arg) identifier_arg )argument_list )call (for_in_clause (identifier_arg) identifier_arg (identifier_args) identifier_args )for_in_clause )generator_expression )call )argument_list )call )return_statement )block (else_clause (block (return_statement (call (attribute (string_'configuration/{}/current') string_'configuration/{}/current' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_cls) identifier_cls (identifier___name__) identifier___name__ )attribute )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Return the name of the key to use to cache the current configuration
(module (function_definition (function_name_read_ncbi_gene2go) function_name_read_ncbi_gene2go (parameters (identifier_fin_gene2go) identifier_fin_gene2go (default_parameter (identifier_taxids) identifier_taxids (None) None )default_parameter (dictionary_splat_pattern (identifier_kws) identifier_kws )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_obj) identifier_obj (call (identifier_Gene2GoReader) identifier_Gene2GoReader (argument_list (identifier_fin_gene2go) identifier_fin_gene2go (keyword_argument (identifier_taxids) identifier_taxids (identifier_taxids) identifier_taxids )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'taxid2asscs') string_'taxid2asscs' (identifier_kws) identifier_kws )comparison_operator (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (attribute (identifier_obj) identifier_obj (identifier_taxid2asscs) identifier_taxid2asscs )attribute )argument_list )call (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_taxid) identifier_taxid (call (identifier_next) identifier_next (argument_list (call (identifier_iter) identifier_iter (argument_list (attribute (identifier_obj) identifier_obj (identifier_taxid2asscs) identifier_taxid2asscs )attribute )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_kws_ncbi) identifier_kws_ncbi (dictionary_comprehension (pair (identifier_k) identifier_k (identifier_v) identifier_v )pair (for_in_clause (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (identifier_kws) identifier_kws (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause (if_clause (comparison_operator (identifier_k) identifier_k (attribute (identifier_AnnoOptions) identifier_AnnoOptions (identifier_keys_exp) identifier_keys_exp )attribute )comparison_operator )if_clause )dictionary_comprehension )assignment )expression_statement (expression_statement (assignment (subscript (identifier_kws_ncbi) identifier_kws_ncbi (string_'taxid') string_'taxid' )subscript (identifier_taxid) identifier_taxid )assignment )expression_statement (return_statement (call (attribute (identifier_obj) identifier_obj (identifier_get_id2gos) identifier_get_id2gos )attribute (argument_list (dictionary_splat (identifier_kws_ncbi) identifier_kws_ncbi )dictionary_splat )argument_list )call )return_statement )block )if_statement )block )if_statement (expression_statement (assignment (identifier_t2asscs_ret) identifier_t2asscs_ret (call (attribute (identifier_obj) identifier_obj (identifier_get_taxid2asscs) identifier_get_taxid2asscs )attribute (argument_list (identifier_taxids) identifier_taxids (dictionary_splat (identifier_kws) identifier_kws )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_t2asscs_usr) identifier_t2asscs_usr (call (attribute (identifier_kws) identifier_kws (identifier_get) identifier_get )attribute (argument_list (string_'taxid2asscs') string_'taxid2asscs' (call (identifier_defaultdict) identifier_defaultdict (argument_list (lambda (call (identifier_defaultdict) identifier_defaultdict (argument_list (lambda (call (identifier_defaultdict) identifier_defaultdict (argument_list (identifier_set) identifier_set )argument_list )call )lambda )argument_list )call )lambda )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'taxid2asscs') string_'taxid2asscs' (identifier_kws) identifier_kws )comparison_operator (block (expression_statement (call (attribute (identifier_obj) identifier_obj (identifier_fill_taxid2asscs) identifier_fill_taxid2asscs )attribute (argument_list (identifier_t2asscs_usr) identifier_t2asscs_usr (identifier_t2asscs_ret) identifier_t2asscs_ret )argument_list )call )expression_statement )block )if_statement (return_statement (call (attribute (identifier_obj) identifier_obj (identifier_get_id2gos_all) identifier_get_id2gos_all )attribute (argument_list (identifier_t2asscs_ret) identifier_t2asscs_ret )argument_list )call )return_statement )block )function_definition )module
Read NCBI's gene2go. Return gene2go data for user-specified taxids.
(module (function_definition (function_name_get_location) function_name_get_location (parameters (identifier_self) identifier_self (identifier_obj) identifier_obj )parameters (block (if_statement (boolean_operator (not_operator (attribute (identifier_obj) identifier_obj (identifier_city) identifier_city )attribute )not_operator (not_operator (attribute (identifier_obj) identifier_obj (identifier_country) identifier_country )attribute )not_operator )boolean_operator (block (return_statement (None) None )return_statement )block (elif_clause (boolean_operator (attribute (identifier_obj) identifier_obj (identifier_city) identifier_city )attribute (attribute (identifier_obj) identifier_obj (identifier_country) identifier_country )attribute )boolean_operator (block (return_statement (binary_operator (string_'%s, %s') string_'%s, %s' (tuple (attribute (identifier_obj) identifier_obj (identifier_city) identifier_city )attribute (attribute (identifier_obj) identifier_obj (identifier_country) identifier_country )attribute )tuple )binary_operator )return_statement )block )elif_clause (elif_clause (boolean_operator (attribute (identifier_obj) identifier_obj (identifier_city) identifier_city )attribute (attribute (identifier_obj) identifier_obj (identifier_country) identifier_country )attribute )boolean_operator (block (return_statement (boolean_operator (attribute (identifier_obj) identifier_obj (identifier_city) identifier_city )attribute (attribute (identifier_obj) identifier_obj (identifier_country) identifier_country )attribute )boolean_operator )return_statement )block )elif_clause )if_statement )block )function_definition )module
return user's location
(module (function_definition (function_name_discover_setup_packages) function_name_discover_setup_packages (parameters )parameters (block (expression_statement (assignment (identifier_logger) identifier_logger (call (attribute (identifier_logging) identifier_logging (identifier_getLogger) identifier_getLogger )attribute (argument_list (identifier___name__) identifier___name__ )argument_list )call )assignment )expression_statement (import_statement (dotted_name (identifier_eups) identifier_eups )dotted_name )import_statement (expression_statement (assignment (identifier_eups_client) identifier_eups_client (call (attribute (identifier_eups) identifier_eups (identifier_Eups) identifier_Eups )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_products) identifier_products (call (attribute (identifier_eups_client) identifier_eups_client (identifier_getSetupProducts) identifier_getSetupProducts )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packages) identifier_packages (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_package) identifier_package (identifier_products) identifier_products (block (expression_statement (assignment (identifier_name) identifier_name (attribute (identifier_package) identifier_package (identifier_name) identifier_name )attribute )assignment )expression_statement (expression_statement (assignment (identifier_info) identifier_info (dictionary (pair (string_'dir') string_'dir' (attribute (identifier_package) identifier_package (identifier_dir) identifier_dir )attribute )pair (pair (string_'version') string_'version' (attribute (identifier_package) identifier_package (identifier_version) identifier_version )attribute )pair )dictionary )assignment )expression_statement (expression_statement (assignment (subscript (identifier_packages) identifier_packages (identifier_name) identifier_name )subscript (identifier_info) identifier_info )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (call (attribute (string_'Found setup package: {name} {version} {dir}') string_'Found setup package: {name} {version} {dir}' (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument (dictionary_splat (identifier_info) identifier_info )dictionary_splat )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_packages) identifier_packages )return_statement )block )function_definition )module
Summarize packages currently set up by EUPS, listing their set up directories and EUPS version names. Returns ------- packages : `dict` Dictionary with keys that are EUPS package names. Values are dictionaries with fields: - ``'dir'``: absolute directory path of the set up package. - ``'version'``: EUPS version string for package. Notes ----- This function imports the ``eups`` Python package, which is assumed to be available in the build environmen. This function is designed to encapsulate all direct EUPS interactions need by the stack documentation build process.
(module (function_definition (function_name_agent_checks) function_name_agent_checks (parameters (default_parameter (identifier_consul_url) identifier_consul_url (None) None )default_parameter (default_parameter (identifier_token) identifier_token (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (if_statement (not_operator (identifier_consul_url) identifier_consul_url )not_operator (block (expression_statement (assignment (identifier_consul_url) identifier_consul_url (call (identifier__get_config) identifier__get_config (argument_list )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_consul_url) identifier_consul_url )not_operator (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_error) identifier_error )attribute (argument_list (string_'No Consul URL found.') string_'No Consul URL found.' )argument_list )call )expression_statement (expression_statement (assignment (subscript (identifier_ret) identifier_ret (string_'message') string_'message' )subscript (string_'No Consul URL found.') string_'No Consul URL found.' )assignment )expression_statement (expression_statement (assignment (subscript (identifier_ret) identifier_ret (string_'res') string_'res' )subscript (False) False )assignment )expression_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )if_statement )block )if_statement (expression_statement (assignment (identifier_function) identifier_function (string_'agent/checks') string_'agent/checks' )assignment )expression_statement (expression_statement (assignment (identifier_ret) identifier_ret (call (identifier__query) identifier__query (argument_list (keyword_argument (identifier_consul_url) identifier_consul_url (identifier_consul_url) identifier_consul_url )keyword_argument (keyword_argument (identifier_function) identifier_function (identifier_function) identifier_function )keyword_argument (keyword_argument (identifier_token) identifier_token (identifier_token) identifier_token )keyword_argument (keyword_argument (identifier_method) identifier_method (string_'GET') string_'GET' )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Returns the checks the local agent is managing :param consul_url: The Consul server URL. :return: Returns the checks the local agent is managing CLI Example: .. code-block:: bash salt '*' consul.agent_checks
(module (function_definition (function_name_rich_presence) function_name_rich_presence (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_kvs) identifier_kvs (call (attribute (identifier_self) identifier_self (identifier_get_ps) identifier_get_ps )attribute (argument_list (string_'rich_presence') string_'rich_presence' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_data) identifier_data (dictionary )dictionary )assignment )expression_statement (if_statement (identifier_kvs) identifier_kvs (block (for_statement (identifier_kv) identifier_kv (identifier_kvs) identifier_kvs (block (expression_statement (assignment (subscript (identifier_data) identifier_data (attribute (identifier_kv) identifier_kv (identifier_key) identifier_key )attribute )subscript (attribute (identifier_kv) identifier_kv (identifier_value) identifier_value )attribute )assignment )expression_statement )block )for_statement )block )if_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
Contains Rich Presence key-values :rtype: dict
(module (function_definition (function_name_immediateAssignment) function_name_immediateAssignment (parameters (default_parameter (identifier_ChannelDescription_presence) identifier_ChannelDescription_presence (integer_0) integer_0 )default_parameter (default_parameter (identifier_PacketChannelDescription_presence) identifier_PacketChannelDescription_presence (integer_0) integer_0 )default_parameter (default_parameter (identifier_StartingTime_presence) identifier_StartingTime_presence (integer_0) integer_0 )default_parameter )parameters (block (expression_statement (assignment (identifier_a) identifier_a (call (identifier_L2PseudoLength) identifier_L2PseudoLength (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_b) identifier_b (call (identifier_TpPd) identifier_TpPd (argument_list (keyword_argument (identifier_pd) identifier_pd (integer_0x6) integer_0x6 )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_c) identifier_c (call (identifier_MessageType) identifier_MessageType (argument_list (keyword_argument (identifier_mesType) identifier_mesType (integer_0x3F) integer_0x3F )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_d) identifier_d (call (identifier_PageModeAndDedicatedModeOrTBF) identifier_PageModeAndDedicatedModeOrTBF (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (binary_operator (binary_operator (identifier_a) identifier_a (identifier_b) identifier_b )binary_operator (identifier_c) identifier_c )binary_operator (identifier_d) identifier_d )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_ChannelDescription_presence) identifier_ChannelDescription_presence (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_f) identifier_f (call (identifier_ChannelDescription) identifier_ChannelDescription (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (identifier_packet) identifier_packet (identifier_f) identifier_f )binary_operator )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_PacketChannelDescription_presence) identifier_PacketChannelDescription_presence (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_g) identifier_g (call (identifier_PacketChannelDescription) identifier_PacketChannelDescription (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (identifier_packet) identifier_packet (identifier_g) identifier_g )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_h) identifier_h (call (identifier_RequestReference) identifier_RequestReference (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_i) identifier_i (call (identifier_TimingAdvance) identifier_TimingAdvance (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_j) identifier_j (call (identifier_MobileAllocation) identifier_MobileAllocation (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (binary_operator (binary_operator (identifier_packet) identifier_packet (identifier_h) identifier_h )binary_operator (identifier_i) identifier_i )binary_operator (identifier_j) identifier_j )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_StartingTime_presence) identifier_StartingTime_presence (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_k) identifier_k (call (identifier_StartingTimeHdr) identifier_StartingTimeHdr (argument_list (keyword_argument (identifier_ieiST) identifier_ieiST (integer_0x7C) integer_0x7C )keyword_argument (keyword_argument (identifier_eightBitST) identifier_eightBitST (integer_0x0) integer_0x0 )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (identifier_packet) identifier_packet (identifier_k) identifier_k )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_l) identifier_l (call (identifier_IaRestOctets) identifier_IaRestOctets (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packet) identifier_packet (binary_operator (identifier_packet) identifier_packet (identifier_l) identifier_l )binary_operator )assignment )expression_statement (return_statement (identifier_packet) identifier_packet )return_statement )block )function_definition )module
IMMEDIATE ASSIGNMENT Section 9.1.18
(module (function_definition (function_name_register) function_name_register (parameters (identifier_self) identifier_self (identifier_cmd) identifier_cmd )parameters (block (if_statement (comparison_operator (attribute (identifier_cmd) identifier_cmd (identifier_name) identifier_name )attribute (None) None )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (string_'no name set for Command object %r') string_'no name set for Command object %r' (identifier_cmd) identifier_cmd )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_cmd) identifier_cmd (identifier_name) identifier_name )attribute (attribute (identifier_self) identifier_self (identifier_commands) identifier_commands )attribute )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (concatenated_string (string_'a command named "%s" has already been ') string_'a command named "%s" has already been ' (string_'registered') string_'registered' )concatenated_string (attribute (identifier_cmd) identifier_cmd (identifier_name) identifier_name )attribute )binary_operator )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_commands) identifier_commands )attribute (attribute (identifier_cmd) identifier_cmd (identifier_name) identifier_name )attribute )subscript (identifier_cmd) identifier_cmd )assignment )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Register a new command with the tool. 'cmd' is expected to be an instance of `Command`, although here only the `cmd.name` attribute is investigated. Multiple commands with the same name are not allowed to be registered. Returns 'self'.
(module (function_definition (function_name_file_loc) function_name_file_loc (parameters )parameters (block (import_statement (dotted_name (identifier_sys) identifier_sys )dotted_name )import_statement (import_statement (dotted_name (identifier_inspect) identifier_inspect )dotted_name )import_statement (try_statement (block (raise_statement (identifier_Exception) identifier_Exception )raise_statement )block (except_clause (block (expression_statement (assignment (identifier_file_) identifier_file_ (binary_operator (string_'.../') string_'.../' (call (attribute (string_'/') string_'/' (identifier_join) identifier_join )attribute (argument_list (subscript (parenthesized_expression (call (attribute (attribute (attribute (call (attribute (identifier_inspect) identifier_inspect (identifier_currentframe) identifier_currentframe )attribute (argument_list )argument_list )call (identifier_f_code) identifier_f_code )attribute (identifier_co_filename) identifier_co_filename )attribute (identifier_split) identifier_split )attribute (argument_list (string_'/') string_'/' )argument_list )call )parenthesized_expression (slice (unary_operator (integer_3) integer_3 )unary_operator (colon) colon )slice )subscript )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_line_) identifier_line_ (attribute (attribute (attribute (subscript (call (attribute (identifier_sys) identifier_sys (identifier_exc_info) identifier_exc_info )attribute (argument_list )argument_list )call (integer_2) integer_2 )subscript (identifier_tb_frame) identifier_tb_frame )attribute (identifier_f_back) identifier_f_back )attribute (identifier_f_lineno) identifier_f_lineno )attribute )assignment )expression_statement (return_statement (call (attribute (string_"{}:{}") string_"{}:{}" (identifier_format) identifier_format )attribute (argument_list (identifier_file_) identifier_file_ (identifier_line_) identifier_line_ )argument_list )call )return_statement )block )except_clause )try_statement )block )function_definition )module
Return file and line number
(module (function_definition (function_name_url_join) function_name_url_join (parameters (identifier_base) identifier_base (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern )parameters (block (expression_statement (assignment (pattern_list (identifier_scheme) identifier_scheme (identifier_netloc) identifier_netloc (identifier_path) identifier_path (identifier_query) identifier_query (identifier_fragment) identifier_fragment )pattern_list (call (identifier_urlsplit) identifier_urlsplit (argument_list (identifier_base) identifier_base )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_path) identifier_path (conditional_expression (identifier_path) identifier_path (call (identifier_len) identifier_len (argument_list (identifier_path) identifier_path )argument_list )call (string_"/") string_"/" )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_path) identifier_path (call (attribute (identifier_posixpath) identifier_posixpath (identifier_join) identifier_join )attribute (argument_list (identifier_path) identifier_path (list_splat (list_comprehension (parenthesized_expression (binary_operator (string_'%s') string_'%s' (identifier_x) identifier_x )binary_operator )parenthesized_expression (for_in_clause (identifier_x) identifier_x (identifier_args) identifier_args )for_in_clause )list_comprehension )list_splat )argument_list )call )assignment )expression_statement (return_statement (call (identifier_urlunsplit) identifier_urlunsplit (argument_list (list (identifier_scheme) identifier_scheme (identifier_netloc) identifier_netloc (identifier_path) identifier_path (identifier_query) identifier_query (identifier_fragment) identifier_fragment )list )argument_list )call )return_statement )block )function_definition )module
Helper function to join an arbitrary number of url segments together.
(module (function_definition (function_name_element_at) function_name_element_at (parameters (identifier_self) identifier_self (identifier_index) identifier_index )parameters (block (if_statement (call (attribute (identifier_self) identifier_self (identifier_closed) identifier_closed )attribute (argument_list )argument_list )call (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (concatenated_string (string_"Attempt to call element_at() on a ") string_"Attempt to call element_at() on a " (string_"closed Queryable.") string_"closed Queryable." )concatenated_string )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (identifier_index) identifier_index (integer_0) integer_0 )comparison_operator (block (raise_statement (call (identifier_OutOfRangeError) identifier_OutOfRangeError (argument_list (string_"Attempt to use negative index.") string_"Attempt to use negative index." )argument_list )call )raise_statement )block )if_statement (try_statement (block (return_statement (subscript (attribute (identifier_self) identifier_self (identifier__iterable) identifier__iterable )attribute (identifier_index) identifier_index )subscript )return_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (raise_statement (call (identifier_OutOfRangeError) identifier_OutOfRangeError (argument_list (string_"Index out of range.") string_"Index out of range." )argument_list )call )raise_statement )block )except_clause (except_clause (identifier_TypeError) identifier_TypeError (block (pass_statement )pass_statement )block )except_clause )try_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_item) identifier_item )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_self) identifier_self )argument_list )call (block (if_statement (comparison_operator (identifier_i) identifier_i (identifier_index) identifier_index )comparison_operator (block (return_statement (identifier_item) identifier_item )return_statement )block )if_statement )block )for_statement (raise_statement (call (identifier_OutOfRangeError) identifier_OutOfRangeError (argument_list (string_"element_at(index) out of range.") string_"element_at(index) out of range." )argument_list )call )raise_statement )block )function_definition )module
Return the element at ordinal index. Note: This method uses immediate execution. Args: index: The index of the element to be returned. Returns: The element at ordinal index in the source sequence. Raises: ValueError: If the Queryable is closed(). ValueError: If index is out of range.
(module (function_definition (function_name_finished) function_name_finished (parameters (identifier_self) identifier_self )parameters (block (return_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier___state) identifier___state )attribute (tuple (attribute (identifier_Job) identifier_Job (identifier_ERROR) identifier_ERROR )attribute (attribute (identifier_Job) identifier_Job (identifier_SUCCESS) identifier_SUCCESS )attribute (attribute (identifier_Job) identifier_Job (identifier_CANCELLED) identifier_CANCELLED )attribute )tuple )comparison_operator )return_statement )block )function_definition )module
True if the job run and finished. There is no difference if the job finished successfully or errored.
(module (function_definition (function_name_update_widget) function_name_update_widget (parameters (identifier_self) identifier_self (default_parameter (identifier_idx) identifier_idx (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_idx) identifier_idx (None) None )comparison_operator (block (for_statement (identifier_w) identifier_w (attribute (identifier_self) identifier_self (identifier__widgets) identifier__widgets )attribute (block (expression_statement (assignment (identifier_idx) identifier_idx (call (attribute (identifier_self) identifier_self (identifier__get_idx_from_widget) identifier__get_idx_from_widget )attribute (argument_list (identifier_w) identifier_w )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__write_widget) identifier__write_widget )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__read_property) identifier__read_property )attribute (argument_list (identifier_idx) identifier_idx )argument_list )call (identifier_idx) identifier_idx )argument_list )call )expression_statement )block )for_statement (pass_statement )pass_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__write_widget) identifier__write_widget )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__read_property) identifier__read_property )attribute (argument_list (identifier_idx) identifier_idx )argument_list )call (identifier_idx) identifier_idx )argument_list )call )expression_statement )block )else_clause )if_statement (return_statement )return_statement )block )function_definition )module
Forces the widget at given index to be updated from the property value. If index is not given, all controlled widgets will be updated. This method should be called directly by the user when the property is not observable, or in very unusual conditions.
(module (function_definition (function_name_set_target_from_config) function_name_set_target_from_config (parameters (identifier_self) identifier_self (identifier_cp) identifier_cp (identifier_section) identifier_section )parameters (block (if_statement (call (attribute (identifier_cp) identifier_cp (identifier_has_option) identifier_has_option )attribute (argument_list (identifier_section) identifier_section (string_"niterations") string_"niterations" )argument_list )call (block (expression_statement (assignment (identifier_niterations) identifier_niterations (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_cp) identifier_cp (identifier_get) identifier_get )attribute (argument_list (identifier_section) identifier_section (string_"niterations") string_"niterations" )argument_list )call )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_niterations) identifier_niterations (None) None )assignment )expression_statement )block )else_clause )if_statement (if_statement (call (attribute (identifier_cp) identifier_cp (identifier_has_option) identifier_has_option )attribute (argument_list (identifier_section) identifier_section (string_"effective-nsamples") string_"effective-nsamples" )argument_list )call (block (expression_statement (assignment (identifier_nsamples) identifier_nsamples (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_cp) identifier_cp (identifier_get) identifier_get )attribute (argument_list (identifier_section) identifier_section (string_"effective-nsamples") string_"effective-nsamples" )argument_list )call )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_nsamples) identifier_nsamples (None) None )assignment )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_set_target) identifier_set_target )attribute (argument_list (keyword_argument (identifier_niterations) identifier_niterations (identifier_niterations) identifier_niterations )keyword_argument (keyword_argument (identifier_eff_nsamples) identifier_eff_nsamples (identifier_nsamples) identifier_nsamples )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Sets the target using the given config file. This looks for ``niterations`` to set the ``target_niterations``, and ``effective-nsamples`` to set the ``target_eff_nsamples``. Parameters ---------- cp : ConfigParser Open config parser to retrieve the argument from. section : str Name of the section to retrieve from.
(module (function_definition (function_name_get_dataset_date_as_datetime) function_name_get_dataset_date_as_datetime (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_dataset_date) identifier_dataset_date (call (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_get) identifier_get )attribute (argument_list (string_'dataset_date') string_'dataset_date' (None) None )argument_list )call )assignment )expression_statement (if_statement (identifier_dataset_date) identifier_dataset_date (block (if_statement (comparison_operator (string_'-') string_'-' (identifier_dataset_date) identifier_dataset_date )comparison_operator (block (expression_statement (assignment (identifier_dataset_date) identifier_dataset_date (subscript (call (attribute (identifier_dataset_date) identifier_dataset_date (identifier_split) identifier_split )attribute (argument_list (string_'-') string_'-' )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement )block )if_statement (return_statement (call (attribute (identifier_datetime) identifier_datetime (identifier_strptime) identifier_strptime )attribute (argument_list (identifier_dataset_date) identifier_dataset_date (string_'%m/%d/%Y') string_'%m/%d/%Y' )argument_list )call )return_statement )block (else_clause (block (return_statement (None) None )return_statement )block )else_clause )if_statement )block )function_definition )module
Get dataset date as datetime.datetime object. For range returns start date. Returns: Optional[datetime.datetime]: Dataset date in datetime object or None if no date is set
(module (function_definition (function_name__op_generic_Ctz) function_name__op_generic_Ctz (parameters (identifier_self) identifier_self (identifier_args) identifier_args )parameters (block (expression_statement (assignment (identifier_wtf_expr) identifier_wtf_expr (call (attribute (identifier_claripy) identifier_claripy (identifier_BVV) identifier_BVV )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__from_size) identifier__from_size )attribute (attribute (identifier_self) identifier_self (identifier__from_size) identifier__from_size )attribute )argument_list )call )assignment )expression_statement (for_statement (identifier_a) identifier_a (call (identifier_reversed) identifier_reversed (argument_list (call (identifier_range) identifier_range (argument_list (attribute (identifier_self) identifier_self (identifier__from_size) identifier__from_size )attribute )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_bit) identifier_bit (call (attribute (identifier_claripy) identifier_claripy (identifier_Extract) identifier_Extract )attribute (argument_list (identifier_a) identifier_a (identifier_a) identifier_a (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_wtf_expr) identifier_wtf_expr (call (attribute (identifier_claripy) identifier_claripy (identifier_If) identifier_If )attribute (argument_list (comparison_operator (identifier_bit) identifier_bit (integer_1) integer_1 )comparison_operator (call (attribute (identifier_claripy) identifier_claripy (identifier_BVV) identifier_BVV )attribute (argument_list (identifier_a) identifier_a (attribute (identifier_self) identifier_self (identifier__from_size) identifier__from_size )attribute )argument_list )call (identifier_wtf_expr) identifier_wtf_expr )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (identifier_wtf_expr) identifier_wtf_expr )return_statement )block )function_definition )module
Count the trailing zeroes
(module (function_definition (function_name_ghuser_role) function_name_ghuser_role (parameters (identifier_name) identifier_name (identifier_rawtext) identifier_rawtext (identifier_text) identifier_text (identifier_lineno) identifier_lineno (identifier_inliner) identifier_inliner (default_parameter (identifier_options) identifier_options (dictionary )dictionary )default_parameter (default_parameter (identifier_content) identifier_content (list )list )default_parameter )parameters (block (expression_statement (assignment (identifier_app) identifier_app (attribute (attribute (attribute (attribute (identifier_inliner) identifier_inliner (identifier_document) identifier_document )attribute (identifier_settings) identifier_settings )attribute (identifier_env) identifier_env )attribute (identifier_app) identifier_app )attribute )assignment )expression_statement (expression_statement (assignment (identifier_ref) identifier_ref (binary_operator (string_'https://www.github.com/') string_'https://www.github.com/' (identifier_text) identifier_text )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_node) identifier_node (call (attribute (identifier_nodes) identifier_nodes (identifier_reference) identifier_reference )attribute (argument_list (identifier_rawtext) identifier_rawtext (identifier_text) identifier_text (keyword_argument (identifier_refuri) identifier_refuri (identifier_ref) identifier_ref )keyword_argument (dictionary_splat (identifier_options) identifier_options )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (expression_list (list (identifier_node) identifier_node )list (list )list )expression_list )return_statement )block )function_definition )module
Link to a GitHub user. Returns 2 part tuple containing list of nodes to insert into the document and a list of system messages. Both are allowed to be empty. :param name: The role name used in the document. :param rawtext: The entire markup snippet, with role. :param text: The text marked with the role. :param lineno: The line number where rawtext appears in the input. :param inliner: The inliner instance that called us. :param options: Directive options for customization. :param content: The directive content for customization.
(module (function_definition (function_name_set_allow_repeat_items) function_name_set_allow_repeat_items (parameters (identifier_self) identifier_self (identifier_allow_repeat_items) identifier_allow_repeat_items )parameters (block (if_statement (call (attribute (call (attribute (identifier_self) identifier_self (identifier_get_allow_repeat_items_metadata) identifier_get_allow_repeat_items_metadata )attribute (argument_list )argument_list )call (identifier_is_read_only) identifier_is_read_only )attribute (argument_list )argument_list )call (block (raise_statement (call (identifier_NoAccess) identifier_NoAccess (argument_list )argument_list )call )raise_statement )block )if_statement (if_statement (not_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_my_osid_object_form) identifier_my_osid_object_form )attribute (identifier__is_valid_boolean) identifier__is_valid_boolean )attribute (argument_list (identifier_allow_repeat_items) identifier_allow_repeat_items )argument_list )call )not_operator (block (raise_statement (call (identifier_InvalidArgument) identifier_InvalidArgument (argument_list )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (subscript (attribute (attribute (identifier_self) identifier_self (identifier_my_osid_object_form) identifier_my_osid_object_form )attribute (identifier__my_map) identifier__my_map )attribute (string_'allowRepeatItems') string_'allowRepeatItems' )subscript (identifier_allow_repeat_items) identifier_allow_repeat_items )assignment )expression_statement )block )function_definition )module
determines if repeat items will be shown, or if the scaffold iteration will simply stop
(module (function_definition (function_name__concat_nbest_translations) function_name__concat_nbest_translations (parameters (typed_parameter (identifier_translations) identifier_translations (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_Translation) identifier_Translation )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_stop_ids) identifier_stop_ids (type (generic_type (identifier_Set) identifier_Set (type_parameter (type (identifier_int) identifier_int )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_length_penalty) identifier_length_penalty (type (identifier_LengthPenalty) identifier_LengthPenalty )type )typed_parameter (typed_default_parameter (identifier_brevity_penalty) identifier_brevity_penalty (type (generic_type (identifier_Optional) identifier_Optional (type_parameter (type (identifier_BrevityPenalty) identifier_BrevityPenalty )type )type_parameter )generic_type )type (None) None )typed_default_parameter )parameters (type (identifier_Translation) identifier_Translation )type (block (expression_statement (assignment (identifier_expanded_translations) identifier_expanded_translations (generator_expression (call (identifier__expand_nbest_translation) identifier__expand_nbest_translation (argument_list (identifier_translation) identifier_translation )argument_list )call (for_in_clause (identifier_translation) identifier_translation (identifier_translations) identifier_translations )for_in_clause )generator_expression )assignment )expression_statement (expression_statement (assignment (identifier_concatenated_translations) identifier_concatenated_translations (list )list )assignment )expression_statement (for_statement (identifier_translations_to_concat) identifier_translations_to_concat (call (identifier_zip) identifier_zip (argument_list (list_splat (identifier_expanded_translations) identifier_expanded_translations )list_splat )argument_list )call (block (expression_statement (call (attribute (identifier_concatenated_translations) identifier_concatenated_translations (identifier_append) identifier_append )attribute (argument_list (call (identifier__concat_translations) identifier__concat_translations (argument_list (keyword_argument (identifier_translations) identifier_translations (call (identifier_list) identifier_list (argument_list (identifier_translations_to_concat) identifier_translations_to_concat )argument_list )call )keyword_argument (keyword_argument (identifier_stop_ids) identifier_stop_ids (identifier_stop_ids) identifier_stop_ids )keyword_argument (keyword_argument (identifier_length_penalty) identifier_length_penalty (identifier_length_penalty) identifier_length_penalty )keyword_argument (keyword_argument (identifier_brevity_penalty) identifier_brevity_penalty (identifier_brevity_penalty) identifier_brevity_penalty )keyword_argument )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (call (identifier__reduce_nbest_translations) identifier__reduce_nbest_translations (argument_list (identifier_concatenated_translations) identifier_concatenated_translations )argument_list )call )return_statement )block )function_definition )module
Combines nbest translations through concatenation. :param translations: A list of translations (sequence starting with BOS symbol, attention_matrix), score and length. :param stop_ids: The EOS symbols. :param length_penalty: LengthPenalty. :param brevity_penalty: Optional BrevityPenalty. :return: A concatenation of the translations with a score.
(module (function_definition (function_name_step_size) function_name_step_size (parameters (identifier_self) identifier_self (default_parameter (identifier_t0) identifier_t0 (None) None )default_parameter (default_parameter (identifier_t1) identifier_t1 (None) None )default_parameter )parameters (block (if_statement (boolean_operator (comparison_operator (identifier_t0) identifier_t0 (None) None )comparison_operator (comparison_operator (identifier_t1) identifier_t1 (None) None )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_tb0) identifier_tb0 (call (attribute (identifier_self) identifier_self (identifier_to_bucket) identifier_to_bucket )attribute (argument_list (identifier_t0) identifier_t0 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tb1) identifier_tb1 (call (attribute (identifier_self) identifier_self (identifier_to_bucket) identifier_to_bucket )attribute (argument_list (identifier_t1) identifier_t1 (keyword_argument (identifier_steps) identifier_steps (integer_1) integer_1 )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_tb0) identifier_tb0 (identifier_tb1) identifier_tb1 )comparison_operator (block (return_statement (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute )return_statement )block )if_statement (return_statement (binary_operator (call (attribute (identifier_self) identifier_self (identifier_from_bucket) identifier_from_bucket )attribute (argument_list (identifier_tb1) identifier_tb1 )argument_list )call (call (attribute (identifier_self) identifier_self (identifier_from_bucket) identifier_from_bucket )attribute (argument_list (identifier_tb0) identifier_tb0 )argument_list )call )binary_operator )return_statement )block )if_statement (return_statement (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute )return_statement )block )function_definition )module
Return the time in seconds of a step. If a begin and end timestamp, return the time in seconds between them after adjusting for what buckets they alias to. If t1 and t0 resolve to the same bucket,
(module (function_definition (function_name_from_name) function_name_from_name (parameters (identifier_cls) identifier_cls (identifier_name) identifier_name (default_parameter (identifier_all_fallback) identifier_all_fallback (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier_name) identifier_name (call (attribute (identifier_name) identifier_name (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_vocation) identifier_vocation (identifier_cls) identifier_cls (block (if_statement (boolean_operator (comparison_operator (attribute (identifier_vocation) identifier_vocation (identifier_name) identifier_name )attribute (identifier_name) identifier_name )comparison_operator (boolean_operator (comparison_operator (subscript (attribute (identifier_vocation) identifier_vocation (identifier_name) identifier_name )attribute (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript (identifier_name) identifier_name )comparison_operator (comparison_operator (identifier_vocation) identifier_vocation (attribute (identifier_cls) identifier_cls (identifier_ALL) identifier_ALL )attribute )comparison_operator )boolean_operator )boolean_operator (block (return_statement (identifier_vocation) identifier_vocation )return_statement )block )if_statement )block )for_statement (if_statement (boolean_operator (identifier_all_fallback) identifier_all_fallback (comparison_operator (call (attribute (identifier_name) identifier_name (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (string_"ALL") string_"ALL" )comparison_operator )boolean_operator (block (return_statement (attribute (identifier_cls) identifier_cls (identifier_ALL) identifier_ALL )attribute )return_statement )block )if_statement (return_statement (None) None )return_statement )block )function_definition )module
Gets a vocation filter from a vocation's name. Parameters ---------- name: :class:`str` The name of the vocation. all_fallback: :class:`bool` Whether to return :py:attr:`ALL` if no match is found. Otherwise, ``None`` will be returned. Returns ------- VocationFilter, optional: The matching vocation filter.
(module (function_definition (function_name_execute_side_effect) function_name_execute_side_effect (parameters (default_parameter (identifier_side_effect) identifier_side_effect (identifier_UNDEFINED) identifier_UNDEFINED )default_parameter (default_parameter (identifier_args) identifier_args (identifier_UNDEFINED) identifier_UNDEFINED )default_parameter (default_parameter (identifier_kwargs) identifier_kwargs (identifier_UNDEFINED) identifier_UNDEFINED )default_parameter )parameters (block (if_statement (comparison_operator (identifier_args) identifier_args (identifier_UNDEFINED) identifier_UNDEFINED )comparison_operator (block (expression_statement (assignment (identifier_args) identifier_args (call (identifier_tuple) identifier_tuple (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_kwargs) identifier_kwargs (identifier_UNDEFINED) identifier_UNDEFINED )comparison_operator (block (expression_statement (assignment (identifier_kwargs) identifier_kwargs (dictionary )dictionary )assignment )expression_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_side_effect) identifier_side_effect (tuple (identifier_BaseException) identifier_BaseException (identifier_Exception) identifier_Exception (identifier_StandardError) identifier_StandardError )tuple )argument_list )call (block (raise_statement (identifier_side_effect) identifier_side_effect )raise_statement )block (elif_clause (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_side_effect) identifier_side_effect (string_'__call__') string_'__call__' )argument_list )call (block (return_statement (call (identifier_side_effect) identifier_side_effect (argument_list (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (call (attribute (string_"Caliendo doesn't know what to do with your side effect. {0}") string_"Caliendo doesn't know what to do with your side effect. {0}" (identifier_format) identifier_format )attribute (argument_list (identifier_side_effect) identifier_side_effect )argument_list )call )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Executes a side effect if one is defined. :param side_effect: The side effect to execute :type side_effect: Mixed. If it's an exception it's raised. If it's callable it's called with teh parameters. :param tuple args: The arguments passed to the stubbed out method :param dict kwargs: The kwargs passed to the subbed out method. :rtype: mixed :returns: Whatever the passed side_effect returns :raises: Whatever error is defined as the side_effect
(module (function_definition (function_name_get_likelihood) function_name_get_likelihood (parameters (identifier_self) identifier_self (identifier_uni_matrix) identifier_uni_matrix )parameters (block (expression_statement (assignment (identifier_uni_dim) identifier_uni_dim (subscript (attribute (identifier_uni_matrix) identifier_uni_matrix (identifier_shape) identifier_shape )attribute (integer_1) integer_1 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_num_edge) identifier_num_edge (call (identifier_len) identifier_len (argument_list (attribute (identifier_self) identifier_self (identifier_edges) identifier_edges )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_values) identifier_values (call (attribute (identifier_np) identifier_np (identifier_zeros) identifier_zeros )attribute (argument_list (list (integer_1) integer_1 (identifier_num_edge) identifier_num_edge )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_new_uni_matrix) identifier_new_uni_matrix (call (attribute (identifier_np) identifier_np (identifier_empty) identifier_empty )attribute (argument_list (list (identifier_uni_dim) identifier_uni_dim (identifier_uni_dim) identifier_uni_dim )list )argument_list )call )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (identifier_num_edge) identifier_num_edge )argument_list )call (block (expression_statement (assignment (identifier_edge) identifier_edge (subscript (attribute (identifier_self) identifier_self (identifier_edges) identifier_edges )attribute (identifier_i) identifier_i )subscript )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_value) identifier_value (identifier_left_u) identifier_left_u (identifier_right_u) identifier_right_u )pattern_list (call (attribute (identifier_edge) identifier_edge (identifier_get_likelihood) identifier_get_likelihood )attribute (argument_list (identifier_uni_matrix) identifier_uni_matrix )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_new_uni_matrix) identifier_new_uni_matrix (attribute (identifier_edge) identifier_edge (identifier_L) identifier_L )attribute (attribute (identifier_edge) identifier_edge (identifier_R) identifier_R )attribute )subscript (identifier_left_u) identifier_left_u )assignment )expression_statement (expression_statement (assignment (subscript (identifier_new_uni_matrix) identifier_new_uni_matrix (attribute (identifier_edge) identifier_edge (identifier_R) identifier_R )attribute (attribute (identifier_edge) identifier_edge (identifier_L) identifier_L )attribute )subscript (identifier_right_u) identifier_right_u )assignment )expression_statement (expression_statement (assignment (subscript (identifier_values) identifier_values (integer_0) integer_0 (identifier_i) identifier_i )subscript (call (attribute (identifier_np) identifier_np (identifier_log) identifier_log )attribute (argument_list (identifier_value) identifier_value )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (expression_list (call (attribute (identifier_np) identifier_np (identifier_sum) identifier_sum )attribute (argument_list (identifier_values) identifier_values )argument_list )call (identifier_new_uni_matrix) identifier_new_uni_matrix )expression_list )return_statement )block )function_definition )module
Compute likelihood of the tree given an U matrix. Args: uni_matrix(numpy.array): univariate matrix to evaluate likelihood on. Returns: tuple[float, numpy.array]: likelihood of the current tree, next level conditional univariate matrix
(module (function_definition (function_name_parser_help_text) function_name_parser_help_text (parameters (identifier_help_text) identifier_help_text )parameters (block (if_statement (comparison_operator (identifier_help_text) identifier_help_text (None) None )comparison_operator (block (return_statement (expression_list (None) None (dictionary )dictionary )expression_list )return_statement )block )if_statement (expression_statement (assignment (identifier_main_text) identifier_main_text (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (identifier_params_help) identifier_params_help (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_line) identifier_line (call (attribute (identifier_help_text) identifier_help_text (identifier_splitlines) identifier_splitlines )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_line) identifier_line (call (attribute (identifier_line) identifier_line (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_match) identifier_match (call (attribute (identifier_re) identifier_re (identifier_search) identifier_search )attribute (argument_list (string_r':\s*param\s*(?P<param>\w+)\s*:(?P<help>.*)$') string_r':\s*param\s*(?P<param>\w+)\s*:(?P<help>.*)$' (identifier_line) identifier_line )argument_list )call )assignment )expression_statement (if_statement (identifier_match) identifier_match (block (expression_statement (assignment (subscript (identifier_params_help) identifier_params_help (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (string_'param') string_'param' )argument_list )call )subscript (call (attribute (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (string_'help') string_'help' )argument_list )call (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (augmented_assignment (identifier_main_text) identifier_main_text (binary_operator (identifier_line) identifier_line (string_' ') string_' ' )binary_operator )augmented_assignment )expression_statement )block )else_clause )if_statement )block )for_statement (expression_statement (assignment (identifier_main_text) identifier_main_text (call (attribute (identifier_main_text) identifier_main_text (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (expression_list (identifier_main_text) identifier_main_text (identifier_params_help) identifier_params_help )expression_list )return_statement )block )function_definition )module
Takes the help text supplied as a doc string and extraxts the description and any param arguments.
(module (function_definition (function_name_make_node) function_name_make_node (parameters (identifier_lower) identifier_lower (identifier_upper) identifier_upper (identifier_lineno) identifier_lineno )parameters (block (if_statement (not_operator (call (identifier_is_static) identifier_is_static (argument_list (identifier_lower) identifier_lower (identifier_upper) identifier_upper )argument_list )call )not_operator (block (expression_statement (call (identifier_syntax_error) identifier_syntax_error (argument_list (identifier_lineno) identifier_lineno (string_'Array bounds must be constants') string_'Array bounds must be constants' )argument_list )call )expression_statement (return_statement (None) None )return_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_lower) identifier_lower (identifier_SymbolVAR) identifier_SymbolVAR )argument_list )call (block (expression_statement (assignment (identifier_lower) identifier_lower (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute )assignment )expression_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_upper) identifier_upper (identifier_SymbolVAR) identifier_SymbolVAR )argument_list )call (block (expression_statement (assignment (identifier_upper) identifier_upper (attribute (identifier_upper) identifier_upper (identifier_value) identifier_value )attribute )assignment )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute (call (identifier_int) identifier_int (argument_list (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_upper) identifier_upper (identifier_value) identifier_value )attribute (call (identifier_int) identifier_int (argument_list (attribute (identifier_upper) identifier_upper (identifier_value) identifier_value )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute (integer_0) integer_0 )comparison_operator (block (expression_statement (call (identifier_syntax_error) identifier_syntax_error (argument_list (identifier_lineno) identifier_lineno (string_'Array bounds must be greater than 0') string_'Array bounds must be greater than 0' )argument_list )call )expression_statement (return_statement (None) None )return_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute (attribute (identifier_upper) identifier_upper (identifier_value) identifier_value )attribute )comparison_operator (block (expression_statement (call (identifier_syntax_error) identifier_syntax_error (argument_list (identifier_lineno) identifier_lineno (string_'Lower array bound must be less or equal to upper one') string_'Lower array bound must be less or equal to upper one' )argument_list )call )expression_statement (return_statement (None) None )return_statement )block )if_statement (return_statement (call (identifier_SymbolBOUND) identifier_SymbolBOUND (argument_list (attribute (identifier_lower) identifier_lower (identifier_value) identifier_value )attribute (attribute (identifier_upper) identifier_upper (identifier_value) identifier_value )attribute )argument_list )call )return_statement )block )function_definition )module
Creates an array bound
(module (function_definition (function_name_return_small_clade) function_name_return_small_clade (parameters (identifier_treenode) identifier_treenode )parameters (block (expression_statement (string_"used to produce balanced trees, returns a tip node from the smaller clade") string_"used to produce balanced trees, returns a tip node from the smaller clade" )expression_statement (expression_statement (assignment (identifier_node) identifier_node (identifier_treenode) identifier_treenode )assignment )expression_statement (while_statement (integer_1) integer_1 (block (if_statement (attribute (identifier_node) identifier_node (identifier_children) identifier_children )attribute (block (expression_statement (assignment (pattern_list (identifier_c1) identifier_c1 (identifier_c2) identifier_c2 )pattern_list (attribute (identifier_node) identifier_node (identifier_children) identifier_children )attribute )assignment )expression_statement (expression_statement (assignment (identifier_node) identifier_node (subscript (call (identifier_sorted) identifier_sorted (argument_list (list (identifier_c1) identifier_c1 (identifier_c2) identifier_c2 )list (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (call (identifier_len) identifier_len (argument_list (call (attribute (identifier_x) identifier_x (identifier_get_leaves) identifier_get_leaves )attribute (argument_list )argument_list )call )argument_list )call )lambda )keyword_argument )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement )block (else_clause (block (return_statement (identifier_node) identifier_node )return_statement )block )else_clause )if_statement )block )while_statement )block )function_definition )module
used to produce balanced trees, returns a tip node from the smaller clade
(module (function_definition (function_name__partition) function_name__partition (parameters (identifier_entity) identifier_entity (identifier_sep) identifier_sep )parameters (block (expression_statement (assignment (identifier_parts) identifier_parts (call (attribute (identifier_entity) identifier_entity (identifier_split) identifier_split )attribute (argument_list (identifier_sep) identifier_sep (integer_1) integer_1 )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_parts) identifier_parts )argument_list )call (integer_2) integer_2 )comparison_operator (block (return_statement (expression_list (subscript (identifier_parts) identifier_parts (integer_0) integer_0 )subscript (identifier_sep) identifier_sep (subscript (identifier_parts) identifier_parts (integer_1) integer_1 )subscript )expression_list )return_statement )block (else_clause (block (return_statement (expression_list (identifier_entity) identifier_entity (string_'') string_'' (string_'') string_'' )expression_list )return_statement )block )else_clause )if_statement )block )function_definition )module
Python2.4 doesn't have a partition method so we provide our own that mimics str.partition from later releases. Split the string at the first occurrence of sep, and return a 3-tuple containing the part before the separator, the separator itself, and the part after the separator. If the separator is not found, return a 3-tuple containing the string itself, followed by two empty strings.