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(module (function_definition (function_name__read_apps) function_name__read_apps (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_apps) identifier_apps (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_cfgfile) identifier_cfgfile (call (attribute (identifier_glob) identifier_glob (identifier_iglob) identifier_iglob )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_confdir) identifier_confdir )attribute (string_'*.conf') string_'*.conf' )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_name) identifier_name (subscript (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_basename) identifier_basename )attribute (argument_list (identifier_cfgfile) identifier_cfgfile )argument_list )call (slice (integer_0) integer_0 (colon) colon (unary_operator (integer_5) integer_5 )unary_operator )slice )subscript )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_app) identifier_app (call (identifier_AppLogParser) identifier_AppLogParser (argument_list (identifier_name) identifier_name (identifier_cfgfile) identifier_cfgfile (attribute (identifier_self) identifier_self (identifier_args) identifier_args )attribute (attribute (identifier_self) identifier_self (identifier_logdir) identifier_logdir )attribute (attribute (identifier_self) identifier_self (identifier_fields) identifier_fields )attribute (attribute (identifier_self) identifier_self (identifier_name_cache) identifier_name_cache )attribute (attribute (identifier_self) identifier_self (identifier_report) identifier_report )attribute )argument_list )call )assignment )expression_statement )block (except_clause (as_pattern (tuple (identifier_LogRaptorOptionError) identifier_LogRaptorOptionError (identifier_LogRaptorConfigError) identifier_LogRaptorConfigError (identifier_LogFormatError) identifier_LogFormatError )tuple (as_pattern_target (identifier_err) identifier_err )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_error) identifier_error )attribute (argument_list (string_'cannot add app %r: %s') string_'cannot add app %r: %s' (identifier_name) identifier_name (identifier_err) identifier_err )argument_list )call )expression_statement )block )except_clause (else_clause (block (expression_statement (assignment (subscript (identifier_apps) identifier_apps (identifier_name) identifier_name )subscript (identifier_app) identifier_app )assignment )expression_statement )block )else_clause )try_statement )block )for_statement (if_statement (not_operator (identifier_apps) identifier_apps )not_operator (block (raise_statement (call (identifier_LogRaptorConfigError) identifier_LogRaptorConfigError (argument_list (binary_operator (string_'no configured application in %r!') string_'no configured application in %r!' (attribute (identifier_self) identifier_self (identifier_confdir) identifier_confdir )attribute )binary_operator )argument_list )call )raise_statement )block )if_statement (return_statement (identifier_apps) identifier_apps )return_statement )block )function_definition )module
Read the configuration of applications returning a dictionary :return: A dictionary with application names as keys and configuration \ object as values.
(module (function_definition (function_name_hostname) function_name_hostname (parameters (identifier_hn) identifier_hn (identifier_ft) identifier_ft (identifier_si) identifier_si )parameters (block (if_statement (boolean_operator (not_operator (identifier_hn) identifier_hn )not_operator (not_operator (attribute (identifier_hn) identifier_hn (identifier_fqdn) identifier_fqdn )attribute )not_operator )boolean_operator (block (expression_statement (assignment (identifier_hn) identifier_hn (identifier_ft) identifier_ft )assignment )expression_statement )block )if_statement (if_statement (boolean_operator (identifier_hn) identifier_hn (attribute (identifier_hn) identifier_hn (identifier_fqdn) identifier_fqdn )attribute )boolean_operator (block (expression_statement (assignment (identifier_fqdn) identifier_fqdn (attribute (identifier_hn) identifier_hn (identifier_fqdn) identifier_fqdn )attribute )assignment )expression_statement (expression_statement (assignment (identifier_hostname) identifier_hostname (conditional_expression (attribute (identifier_hn) identifier_hn (identifier_hostname) identifier_hostname )attribute (attribute (identifier_hn) identifier_hn (identifier_hostname) identifier_hostname )attribute (subscript (call (attribute (identifier_fqdn) identifier_fqdn (identifier_split) identifier_split )attribute (argument_list (string_".") string_"." )argument_list )call (integer_0) integer_0 )subscript )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_domain) identifier_domain (conditional_expression (attribute (identifier_hn) identifier_hn (identifier_domain) identifier_domain )attribute (attribute (identifier_hn) identifier_hn (identifier_domain) identifier_domain )attribute (call (attribute (string_".") string_"." (identifier_join) identifier_join )attribute (argument_list (subscript (call (attribute (identifier_fqdn) identifier_fqdn (identifier_split) identifier_split )attribute (argument_list (string_".") string_"." )argument_list )call (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )conditional_expression )assignment )expression_statement (return_statement (call (identifier_Hostname) identifier_Hostname (argument_list (identifier_fqdn) identifier_fqdn (identifier_hostname) identifier_hostname (identifier_domain) identifier_domain )argument_list )call )return_statement )block (else_clause (block (expression_statement (assignment (identifier_fqdn) identifier_fqdn (conditional_expression (call (attribute (identifier_si) identifier_si (identifier_get) identifier_get )attribute (argument_list (string_"profile_name") string_"profile_name" )argument_list )call (identifier_si) identifier_si (None) None )conditional_expression )assignment )expression_statement (if_statement (identifier_fqdn) identifier_fqdn (block (expression_statement (assignment (identifier_hostname) identifier_hostname (subscript (call (attribute (identifier_fqdn) identifier_fqdn (identifier_split) identifier_split )attribute (argument_list (string_".") string_"." )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_domain) identifier_domain (call (attribute (string_".") string_"." (identifier_join) identifier_join )attribute (argument_list (subscript (call (attribute (identifier_fqdn) identifier_fqdn (identifier_split) identifier_split )attribute (argument_list (string_".") string_"." )argument_list )call (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )assignment )expression_statement (return_statement (call (identifier_Hostname) identifier_Hostname (argument_list (identifier_fqdn) identifier_fqdn (identifier_hostname) identifier_hostname (identifier_domain) identifier_domain )argument_list )call )return_statement )block )if_statement )block )else_clause )if_statement (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_"Unable to get hostname.") string_"Unable to get hostname." )argument_list )call )raise_statement )block )function_definition )module
Check hostname, facter and systemid to get the fqdn, hostname and domain. Prefer hostname to facter and systemid. Returns: insights.combiners.hostname.Hostname: A named tuple with `fqdn`, `hostname` and `domain` components. Raises: Exception: If no hostname can be found in any of the three parsers.
(module (function_definition (function_name_calculate_entropy) function_name_calculate_entropy (parameters (identifier_self) identifier_self (identifier_entropy_string) identifier_entropy_string )parameters (block (expression_statement (assignment (identifier_total) identifier_total (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_char) identifier_char (identifier_entropy_string) identifier_entropy_string (block (if_statement (call (attribute (identifier_char) identifier_char (identifier_isalpha) identifier_isalpha )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_prob) identifier_prob (subscript (attribute (identifier_self) identifier_self (identifier_frequency) identifier_frequency )attribute (call (attribute (identifier_char) identifier_char (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )subscript )assignment )expression_statement (expression_statement (augmented_assignment (identifier_total) identifier_total (binary_operator (unary_operator (call (attribute (identifier_math) identifier_math (identifier_log) identifier_log )attribute (argument_list (identifier_prob) identifier_prob )argument_list )call )unary_operator (call (attribute (identifier_math) identifier_math (identifier_log) identifier_log )attribute (argument_list (integer_2) integer_2 )argument_list )call )binary_operator )augmented_assignment )expression_statement )block )if_statement )block )for_statement (expression_statement (call (attribute (identifier_logging) identifier_logging (identifier_debug) identifier_debug )attribute (argument_list (call (attribute (string_"Entropy score: {0}") string_"Entropy score: {0}" (identifier_format) identifier_format )attribute (argument_list (identifier_total) identifier_total )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_total) identifier_total )return_statement )block )function_definition )module
Calculates the entropy of a string based on known frequency of English letters. Args: entropy_string: A str representing the string to calculate. Returns: A negative float with the total entropy of the string (higher is better).
(module (function_definition (function_name__maybe_match_name) function_name__maybe_match_name (parameters (identifier_a) identifier_a (identifier_b) identifier_b )parameters (block (expression_statement (assignment (identifier_a_has) identifier_a_has (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_a) identifier_a (string_'name') string_'name' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_b_has) identifier_b_has (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_b) identifier_b (string_'name') string_'name' )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (identifier_a_has) identifier_a_has (identifier_b_has) identifier_b_has )boolean_operator (block (if_statement (comparison_operator (attribute (identifier_a) identifier_a (identifier_name) identifier_name )attribute (attribute (identifier_b) identifier_b (identifier_name) identifier_name )attribute )comparison_operator (block (return_statement (attribute (identifier_a) identifier_a (identifier_name) identifier_name )attribute )return_statement )block (else_clause (block (return_statement (None) None )return_statement )block )else_clause )if_statement )block (elif_clause (identifier_a_has) identifier_a_has (block (return_statement (attribute (identifier_a) identifier_a (identifier_name) identifier_name )attribute )return_statement )block )elif_clause (elif_clause (identifier_b_has) identifier_b_has (block (return_statement (attribute (identifier_b) identifier_b (identifier_name) identifier_name )attribute )return_statement )block )elif_clause )if_statement (return_statement (None) None )return_statement )block )function_definition )module
Try to find a name to attach to the result of an operation between a and b. If only one of these has a `name` attribute, return that name. Otherwise return a consensus name if they match of None if they have different names. Parameters ---------- a : object b : object Returns ------- name : str or None See Also -------- pandas.core.common.consensus_name_attr
(module (function_definition (function_name__parse_os_release) function_name__parse_os_release (parameters (list_splat_pattern (identifier_os_release_files) identifier_os_release_files )list_splat_pattern )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_filename) identifier_filename (identifier_os_release_files) identifier_os_release_files (block (try_statement (block (with_statement (with_clause (with_item (as_pattern (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_files) identifier_files )attribute (identifier_fopen) identifier_fopen )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call (as_pattern_target (identifier_ifile) identifier_ifile )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_regex) identifier_regex (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (string_'^([\\w]+)=(?:\'|")?(.*?)(?:\'|")?$') string_'^([\\w]+)=(?:\'|")?(.*?)(?:\'|")?$' )argument_list )call )assignment )expression_statement (for_statement (identifier_line) identifier_line (identifier_ifile) identifier_ifile (block (expression_statement (assignment (identifier_match) identifier_match (call (attribute (identifier_regex) identifier_regex (identifier_match) identifier_match )attribute (argument_list (call (attribute (identifier_line) identifier_line (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (identifier_match) identifier_match (block (expression_statement (assignment (subscript (identifier_ret) identifier_ret (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (integer_1) integer_1 )argument_list )call )subscript (call (attribute (identifier_re) identifier_re (identifier_sub) identifier_sub )attribute (argument_list (string_r'\\([$"\'\\`])') string_r'\\([$"\'\\`])' (string_r'\1') string_r'\1' (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (integer_2) integer_2 )argument_list )call )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement )block )with_statement (break_statement )break_statement )block (except_clause (tuple (identifier_IOError) identifier_IOError (identifier_OSError) identifier_OSError )tuple (block (pass_statement )pass_statement )block )except_clause )try_statement )block )for_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Parse os-release and return a parameter dictionary See http://www.freedesktop.org/software/systemd/man/os-release.html for specification of the file format.
(module (function_definition (function_name_parse_source_file) function_name_parse_source_file (parameters (identifier_filename) identifier_filename )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_filename) identifier_filename (string_'rb') string_'rb' )argument_list )call (as_pattern_target (identifier_fid) identifier_fid )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_content) identifier_content (call (attribute (identifier_fid) identifier_fid (identifier_read) identifier_read )attribute (argument_list )argument_list )call )assignment )expression_statement )block )with_statement (expression_statement (assignment (identifier_content) identifier_content (call (attribute (identifier_content) identifier_content (identifier_replace) identifier_replace )attribute (argument_list (string_b'\r\n') string_b'\r\n' (string_b'\n') string_b'\n' )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_node) identifier_node (call (attribute (identifier_ast) identifier_ast (identifier_parse) identifier_parse )attribute (argument_list (identifier_content) identifier_content )argument_list )call )assignment )expression_statement (return_statement (expression_list (identifier_node) identifier_node (call (attribute (identifier_content) identifier_content (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )expression_list )return_statement )block (except_clause (identifier_SyntaxError) identifier_SyntaxError (block (return_statement (expression_list (None) None (call (attribute (identifier_content) identifier_content (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )expression_list )return_statement )block )except_clause )try_statement )block )function_definition )module
Parse source file into AST node Parameters ---------- filename : str File path Returns ------- node : AST node content : utf-8 encoded string
(module (function_definition (function_name__download_mirbase) function_name__download_mirbase (parameters (identifier_args) identifier_args (default_parameter (identifier_version) identifier_version (string_"CURRENT") string_"CURRENT" )default_parameter )parameters (block (if_statement (boolean_operator (not_operator (attribute (identifier_args) identifier_args (identifier_hairpin) identifier_hairpin )attribute )not_operator (not_operator (attribute (identifier_args) identifier_args (identifier_mirna) identifier_mirna )attribute )not_operator )boolean_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_"Working with version %s") string_"Working with version %s" (identifier_version) identifier_version )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_hairpin_fn) identifier_hairpin_fn (call (attribute (identifier_op) identifier_op (identifier_join) identifier_join )attribute (argument_list (call (attribute (identifier_op) identifier_op (identifier_abspath) identifier_abspath )attribute (argument_list (attribute (identifier_args) identifier_args (identifier_out) identifier_out )attribute )argument_list )call (string_"hairpin.fa.gz") string_"hairpin.fa.gz" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_mirna_fn) identifier_mirna_fn (call (attribute (identifier_op) identifier_op (identifier_join) identifier_join )attribute (argument_list (call (attribute (identifier_op) identifier_op (identifier_abspath) identifier_abspath )attribute (argument_list (attribute (identifier_args) identifier_args (identifier_out) identifier_out )attribute )argument_list )call (string_"miRNA.str.gz") string_"miRNA.str.gz" )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (identifier_file_exists) identifier_file_exists (argument_list (identifier_hairpin_fn) identifier_hairpin_fn )argument_list )call )not_operator (block (expression_statement (assignment (identifier_cmd_h) identifier_cmd_h (binary_operator (string_"wget ftp://mirbase.org/pub/mirbase/%s/hairpin.fa.gz -O %s && gunzip -f !$") string_"wget ftp://mirbase.org/pub/mirbase/%s/hairpin.fa.gz -O %s && gunzip -f !$" (tuple (identifier_version) identifier_version (identifier_hairpin_fn) identifier_hairpin_fn )tuple )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_do) identifier_do (identifier_run) identifier_run )attribute (argument_list (identifier_cmd_h) identifier_cmd_h (string_"download hairpin") string_"download hairpin" )argument_list )call )expression_statement )block )if_statement (if_statement (not_operator (call (identifier_file_exists) identifier_file_exists (argument_list (identifier_mirna_fn) identifier_mirna_fn )argument_list )call )not_operator (block (expression_statement (assignment (identifier_cmd_m) identifier_cmd_m (binary_operator (string_"wget ftp://mirbase.org/pub/mirbase/%s/miRNA.str.gz -O %s && gunzip -f !$") string_"wget ftp://mirbase.org/pub/mirbase/%s/miRNA.str.gz -O %s && gunzip -f !$" (tuple (identifier_version) identifier_version (identifier_mirna_fn) identifier_mirna_fn )tuple )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_do) identifier_do (identifier_run) identifier_run )attribute (argument_list (identifier_cmd_m) identifier_cmd_m (string_"download mirna") string_"download mirna" )argument_list )call )expression_statement )block )if_statement )block (else_clause (block (return_statement (expression_list (attribute (identifier_args) identifier_args (identifier_hairpin) identifier_hairpin )attribute (attribute (identifier_args) identifier_args (identifier_mirna) identifier_mirna )attribute )expression_list )return_statement )block )else_clause )if_statement )block )function_definition )module
Download files from mirbase
(module (function_definition (function_name_parse_band_log) function_name_parse_band_log (parameters (identifier_self) identifier_self (identifier_message) identifier_message )parameters (block (if_statement (boolean_operator (comparison_operator (string_"payload") string_"payload" (identifier_message) identifier_message )comparison_operator (call (identifier_hasattr) identifier_hasattr (argument_list (subscript (identifier_message) identifier_message (string_"payload") string_"payload" )subscript (string_"name") string_"name" )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_record) identifier_record (subscript (identifier_message) identifier_message (string_"payload") string_"payload" )subscript )assignment )expression_statement (for_statement (identifier_k) identifier_k (call (identifier_dir) identifier_dir (argument_list (identifier_record) identifier_record )argument_list )call (block (if_statement (call (attribute (identifier_k) identifier_k (identifier_startswith) identifier_startswith )attribute (argument_list (string_"workflows_exc_") string_"workflows_exc_" )argument_list )call (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_record) identifier_record (subscript (identifier_k) identifier_k (slice (integer_14) integer_14 (colon) colon )slice )subscript (call (identifier_getattr) identifier_getattr (argument_list (identifier_record) identifier_record (identifier_k) identifier_k )argument_list )call )argument_list )call )expression_statement (expression_statement (call (identifier_delattr) identifier_delattr (argument_list (identifier_record) identifier_record (identifier_k) identifier_k )argument_list )call )expression_statement )block )if_statement )block )for_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (call (attribute (identifier_self) identifier_self (identifier_get_status) identifier_get_status )attribute (argument_list )argument_list )call (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_record) identifier_record (binary_operator (string_"workflows_") string_"workflows_" (identifier_k) identifier_k )binary_operator (identifier_v) identifier_v )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (call (attribute (identifier_logging) identifier_logging (identifier_getLogger) identifier_getLogger )attribute (argument_list (attribute (identifier_record) identifier_record (identifier_name) identifier_name )attribute )argument_list )call (identifier_handle) identifier_handle )attribute (argument_list (identifier_record) identifier_record )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (identifier_warning) identifier_warning )attribute (argument_list (binary_operator (string_"Received broken record on log band\n") string_"Received broken record on log band\n" (string_"Message: %s\nRecord: %s") string_"Message: %s\nRecord: %s" )binary_operator (call (identifier_str) identifier_str (argument_list (identifier_message) identifier_message )argument_list )call (call (identifier_str) identifier_str (argument_list (boolean_operator (call (identifier_hasattr) identifier_hasattr (argument_list (call (attribute (identifier_message) identifier_message (identifier_get) identifier_get )attribute (argument_list (string_"payload") string_"payload" )argument_list )call (string_"__dict__") string_"__dict__" )argument_list )call (attribute (subscript (identifier_message) identifier_message (string_"payload") string_"payload" )subscript (identifier___dict__) identifier___dict__ )attribute )boolean_operator )argument_list )call )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Process incoming logging messages from the service.
(module (function_definition (function_name__read_para_hip_signature_2) function_name__read_para_hip_signature_2 (parameters (identifier_self) identifier_self (identifier_code) identifier_code (identifier_cbit) identifier_cbit (identifier_clen) identifier_clen (keyword_separator )keyword_separator (identifier_desc) identifier_desc (identifier_length) identifier_length (identifier_version) identifier_version )parameters (block (expression_statement (assignment (identifier__algo) identifier__algo (call (attribute (identifier_self) identifier_self (identifier__read_unpack) identifier__read_unpack )attribute (argument_list (integer_2) integer_2 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier__sign) identifier__sign (call (attribute (identifier_self) identifier_self (identifier__read_fileng) identifier__read_fileng )attribute (argument_list (binary_operator (identifier_clen) identifier_clen (integer_2) integer_2 )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_hip_signature_2) identifier_hip_signature_2 (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_type) identifier_type (identifier_desc) identifier_desc )keyword_argument (keyword_argument (identifier_critical) identifier_critical (identifier_cbit) identifier_cbit )keyword_argument (keyword_argument (identifier_length) identifier_length (identifier_clen) identifier_clen )keyword_argument (keyword_argument (identifier_algorithm) identifier_algorithm (call (attribute (identifier__HI_ALGORITHM) identifier__HI_ALGORITHM (identifier_get) identifier_get )attribute (argument_list (identifier__algo) identifier__algo (string_'Unassigned') string_'Unassigned' )argument_list )call )keyword_argument (keyword_argument (identifier_signature) identifier_signature (identifier__sign) identifier__sign )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier__plen) identifier__plen (binary_operator (identifier_length) identifier_length (identifier_clen) identifier_clen )binary_operator )assignment )expression_statement (if_statement (identifier__plen) identifier__plen (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__read_fileng) identifier__read_fileng )attribute (argument_list (identifier__plen) identifier__plen )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_hip_signature_2) identifier_hip_signature_2 )return_statement )block )function_definition )module
Read HIP HIP_SIGNATURE_2 parameter. Structure of HIP HIP_SIGNATURE_2 parameter [RFC 7401]: 0 1 2 3 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ | Type | Length | +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ | SIG alg | Signature / +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ / | Padding | +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ Octets Bits Name Description 0 0 hip_signature_2.type Parameter Type 1 15 hip_signature_2.critical Critical Bit 2 16 hip_signature_2.length Length of Contents 4 32 hip_signature_2.algorithm SIG Algorithm 6 48 hip_signature_2.signature Signature ? ? - Padding
(module (function_definition (function_name_save_script_file_for_state_and_source_path) function_name_save_script_file_for_state_and_source_path (parameters (identifier_state) identifier_state (identifier_state_path_full) identifier_state_path_full (default_parameter (identifier_as_copy) identifier_as_copy (False) False )default_parameter )parameters (block (import_from_statement (dotted_name (identifier_rafcon) identifier_rafcon (identifier_core) identifier_core (identifier_states) identifier_states (identifier_execution_state) identifier_execution_state )dotted_name (dotted_name (identifier_ExecutionState) identifier_ExecutionState )dotted_name )import_from_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_state) identifier_state (identifier_ExecutionState) identifier_ExecutionState )argument_list )call (block (expression_statement (assignment (identifier_source_script_file) identifier_source_script_file (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (attribute (identifier_state) identifier_state (identifier_script) identifier_script )attribute (identifier_path) identifier_path )attribute (attribute (attribute (identifier_state) identifier_state (identifier_script) identifier_script )attribute (identifier_filename) identifier_filename )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_destination_script_file) identifier_destination_script_file (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_state_path_full) identifier_state_path_full (identifier_SCRIPT_FILE) identifier_SCRIPT_FILE )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (identifier_write_file) identifier_write_file (argument_list (identifier_destination_script_file) identifier_destination_script_file (attribute (identifier_state) identifier_state (identifier_script_text) identifier_script_text )attribute )argument_list )call )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_exception) identifier_exception )attribute (argument_list (call (attribute (string_"Storing of script file failed: {0} -> {1}") string_"Storing of script file failed: {0} -> {1}" (identifier_format) identifier_format )attribute (argument_list (call (attribute (identifier_state) identifier_state (identifier_get_path) identifier_get_path )attribute (argument_list )argument_list )call (identifier_destination_script_file) identifier_destination_script_file )argument_list )call )argument_list )call )expression_statement (raise_statement )raise_statement )block )except_clause )try_statement (if_statement (boolean_operator (not_operator (comparison_operator (identifier_source_script_file) identifier_source_script_file (identifier_destination_script_file) identifier_destination_script_file )comparison_operator )not_operator (not_operator (identifier_as_copy) identifier_as_copy )not_operator )boolean_operator (block (expression_statement (assignment (attribute (attribute (identifier_state) identifier_state (identifier_script) identifier_script )attribute (identifier_filename) identifier_filename )attribute (identifier_SCRIPT_FILE) identifier_SCRIPT_FILE )assignment )expression_statement (expression_statement (assignment (attribute (attribute (identifier_state) identifier_state (identifier_script) identifier_script )attribute (identifier_path) identifier_path )attribute (identifier_state_path_full) identifier_state_path_full )assignment )expression_statement )block )if_statement )block )if_statement )block )function_definition )module
Saves the script file for a state to the directory of the state. The script name will be set to the SCRIPT_FILE constant. :param state: The state of which the script file should be saved :param str state_path_full: The path to the file system storage location of the state :param bool as_copy: Temporary storage flag to signal that the given path is not the new file_system_path
(module (function_definition (function_name__find_start_time) function_name__find_start_time (parameters (identifier_hdr) identifier_hdr (identifier_s_freq) identifier_s_freq )parameters (block (expression_statement (assignment (identifier_start_time) identifier_start_time (subscript (subscript (identifier_hdr) identifier_hdr (string_'stc') string_'stc' )subscript (string_'creation_time') string_'creation_time' )subscript )assignment )expression_statement (for_statement (identifier_one_stamp) identifier_one_stamp (subscript (identifier_hdr) identifier_hdr (string_'stamps') string_'stamps' )subscript (block (if_statement (comparison_operator (call (attribute (subscript (identifier_one_stamp) identifier_one_stamp (string_'segment_name') string_'segment_name' )subscript (identifier_decode) identifier_decode )attribute (argument_list )argument_list )call (subscript (subscript (identifier_hdr) identifier_hdr (string_'erd') string_'erd' )subscript (string_'filename') string_'filename' )subscript )comparison_operator (block (expression_statement (assignment (identifier_offset) identifier_offset (subscript (identifier_one_stamp) identifier_one_stamp (string_'start_stamp') string_'start_stamp' )subscript )assignment )expression_statement (break_statement )break_statement )block )if_statement )block )for_statement (expression_statement (assignment (identifier_erd_time) identifier_erd_time (call (attribute (parenthesized_expression (binary_operator (subscript (subscript (identifier_hdr) identifier_hdr (string_'erd') string_'erd' )subscript (string_'creation_time') string_'creation_time' )subscript (call (identifier_timedelta) identifier_timedelta (argument_list (keyword_argument (identifier_seconds) identifier_seconds (binary_operator (identifier_offset) identifier_offset (identifier_s_freq) identifier_s_freq )binary_operator )keyword_argument )argument_list )call )binary_operator )parenthesized_expression (identifier_replace) identifier_replace )attribute (argument_list (keyword_argument (identifier_microsecond) identifier_microsecond (integer_0) integer_0 )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_stc_erd_diff) identifier_stc_erd_diff (call (attribute (parenthesized_expression (binary_operator (identifier_start_time) identifier_start_time (identifier_erd_time) identifier_erd_time )binary_operator )parenthesized_expression (identifier_total_seconds) identifier_total_seconds )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_stc_erd_diff) identifier_stc_erd_diff (identifier_START_TIME_TOL) identifier_START_TIME_TOL )comparison_operator (block (expression_statement (call (attribute (identifier_lg) identifier_lg (identifier_warn) identifier_warn )attribute (argument_list (call (attribute (concatenated_string (string_'Time difference between ERD and STC is {} s so using ERD time') string_'Time difference between ERD and STC is {} s so using ERD time' (string_' at {}') string_' at {}' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (identifier_stc_erd_diff) identifier_stc_erd_diff (identifier_erd_time) identifier_erd_time )argument_list )call )argument_list )call )expression_statement (expression_statement (assignment (identifier_start_time) identifier_start_time (identifier_erd_time) identifier_erd_time )assignment )expression_statement )block )if_statement (return_statement (identifier_start_time) identifier_start_time )return_statement )block )function_definition )module
Find the start time, usually in STC, but if that's not correct, use ERD Parameters ---------- hdr : dict header with stc (and stamps) and erd s_freq : int sampling frequency Returns ------- datetime either from stc or from erd Notes ----- Sometimes, but rather rarely, there is a mismatch between the time in the stc and the time in the erd. For some reason, the time in the stc is way off (by hours), which is clearly not correct. We can try to reconstruct the actual time, but looking at the ERD time (of any file apart from the first one) and compute the original time back based on the offset of the number of samples in stc. For some reason, this is not the same for all the ERD, but the jitter is in the order of 1-2s which is acceptable for our purposes (probably, but be careful about the notes).
(module (function_definition (function_name__Execute) function_name__Execute (parameters (identifier_self) identifier_self (identifier_options) identifier_options )parameters (block (expression_statement (assignment (identifier_whitelist) identifier_whitelist (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_name) identifier_name (subscript (identifier_options) identifier_options (string_"name") string_"name" )subscript )keyword_argument (keyword_argument (identifier_description) identifier_description (call (attribute (identifier_options) identifier_options (identifier_get) identifier_get )attribute (argument_list (string_"description") string_"description" (string_"<empty>") string_"<empty>" )argument_list )call )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (attribute (attribute (attribute (attribute (identifier_self) identifier_self (identifier__agent) identifier__agent )attribute (identifier_client) identifier_client )attribute (identifier_compute) identifier_compute )attribute (identifier_security_groups) identifier_security_groups )attribute (identifier_create) identifier_create )attribute (argument_list (dictionary_splat (identifier_whitelist) identifier_whitelist )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Handles security groups operations.
(module (function_definition (function_name_set_value) function_name_set_value (parameters (identifier_self) identifier_self (identifier_pymux) identifier_pymux (identifier_value) identifier_value )parameters (block (try_statement (block (expression_statement (assignment (identifier_value) identifier_value (call (identifier_int) identifier_int (argument_list (identifier_value) identifier_value )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_value) identifier_value (integer_0) integer_0 )comparison_operator (block (raise_statement (identifier_ValueError) identifier_ValueError )raise_statement )block )if_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (raise_statement (call (identifier_SetOptionError) identifier_SetOptionError (argument_list (string_'Expecting an integer.') string_'Expecting an integer.' )argument_list )call )raise_statement )block )except_clause (else_clause (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_pymux) identifier_pymux (attribute (identifier_self) identifier_self (identifier_attribute_name) identifier_attribute_name )attribute (identifier_value) identifier_value )argument_list )call )expression_statement )block )else_clause )try_statement )block )function_definition )module
Take a string, and return an integer. Raise SetOptionError when the given text does not parse to a positive integer.
(module (function_definition (function_name_genlmsg_valid_hdr) function_name_genlmsg_valid_hdr (parameters (identifier_nlh) identifier_nlh (identifier_hdrlen) identifier_hdrlen )parameters (block (if_statement (not_operator (call (identifier_nlmsg_valid_hdr) identifier_nlmsg_valid_hdr (argument_list (identifier_nlh) identifier_nlh (identifier_GENL_HDRLEN) identifier_GENL_HDRLEN )argument_list )call )not_operator (block (return_statement (False) False )return_statement )block )if_statement (expression_statement (assignment (identifier_ghdr) identifier_ghdr (call (identifier_genlmsghdr) identifier_genlmsghdr (argument_list (call (identifier_nlmsg_data) identifier_nlmsg_data (argument_list (identifier_nlh) identifier_nlh )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_genlmsg_len) identifier_genlmsg_len (argument_list (identifier_ghdr) identifier_ghdr )argument_list )call (call (identifier_NLMSG_ALIGN) identifier_NLMSG_ALIGN (argument_list (identifier_hdrlen) identifier_hdrlen )argument_list )call )comparison_operator (block (return_statement (False) False )return_statement )block )if_statement (return_statement (True) True )return_statement )block )function_definition )module
Validate Generic Netlink message headers. https://github.com/thom311/libnl/blob/libnl3_2_25/lib/genl/genl.c#L117 Verifies the integrity of the Netlink and Generic Netlink headers by enforcing the following requirements: - Valid Netlink message header (`nlmsg_valid_hdr()`) - Presence of a complete Generic Netlink header - At least `hdrlen` bytes of payload included after the generic Netlink header. Positional arguments: nlh -- Netlink message header (nlmsghdr class instance). hdrlen -- length of user header (integer). Returns: True if the headers are valid or False if not.
(module (function_definition (function_name_changed_path) function_name_changed_path (parameters (identifier_self) identifier_self )parameters (block (expression_statement (string_"Find any changed path and update all changed modification times.") string_"Find any changed path and update all changed modification times." )expression_statement (expression_statement (assignment (identifier_result) identifier_result (None) None )assignment )expression_statement (for_statement (identifier_path) identifier_path (attribute (identifier_self) identifier_self (identifier_paths_to_modification_times) identifier_paths_to_modification_times )attribute (block (expression_statement (assignment (identifier_lastmod) identifier_lastmod (subscript (attribute (identifier_self) identifier_self (identifier_paths_to_modification_times) identifier_paths_to_modification_times )attribute (identifier_path) identifier_path )subscript )assignment )expression_statement (expression_statement (assignment (identifier_mod) identifier_mod (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_getmtime) identifier_getmtime )attribute (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_mod) identifier_mod (identifier_lastmod) identifier_lastmod )comparison_operator (block (expression_statement (assignment (identifier_result) identifier_result (binary_operator (string_"Watch file has been modified: ") string_"Watch file has been modified: " (call (identifier_repr) identifier_repr (argument_list (identifier_path) identifier_path )argument_list )call )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_paths_to_modification_times) identifier_paths_to_modification_times )attribute (identifier_path) identifier_path )subscript (identifier_mod) identifier_mod )assignment )expression_statement )block )for_statement (for_statement (identifier_folder) identifier_folder (attribute (identifier_self) identifier_self (identifier_folder_paths) identifier_folder_paths )attribute (block (for_statement (identifier_filename) identifier_filename (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_folder) identifier_folder )argument_list )call (block (expression_statement (assignment (identifier_subpath) identifier_subpath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_folder) identifier_folder (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isfile) identifier_isfile )attribute (argument_list (identifier_subpath) identifier_subpath )argument_list )call (comparison_operator (identifier_subpath) identifier_subpath (attribute (identifier_self) identifier_self (identifier_paths_to_modification_times) identifier_paths_to_modification_times )attribute )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_result) identifier_result (binary_operator (string_"New file in watched folder: ") string_"New file in watched folder: " (call (identifier_repr) identifier_repr (argument_list (identifier_subpath) identifier_subpath )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add) identifier_add )attribute (argument_list (identifier_subpath) identifier_subpath )argument_list )call )expression_statement )block )if_statement )block )for_statement )block )for_statement (if_statement (attribute (identifier_self) identifier_self (identifier_check_python_modules) identifier_check_python_modules )attribute (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_all_modules) identifier_add_all_modules )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (if_statement (attribute (identifier_self) identifier_self (identifier_check_javascript) identifier_check_javascript )attribute (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_watch_javascript) identifier_watch_javascript )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Find any changed path and update all changed modification times.
(module (function_definition (function_name_save) function_name_save (parameters (identifier_self) identifier_self (default_parameter (identifier_expires) identifier_expires (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_expires) identifier_expires (None) None )comparison_operator (block (expression_statement (assignment (identifier_expires) identifier_expires (attribute (identifier_self) identifier_self (identifier_expires) identifier_expires )attribute )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_self) identifier_self (identifier_serialize) identifier_serialize )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_key) identifier_key (call (attribute (identifier_self) identifier_self (identifier__key) identifier__key )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__all_keys) identifier__all_keys )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier__cache) identifier__cache (identifier_set) identifier_set )attribute (argument_list (identifier_key) identifier_key (identifier_s) identifier_s (identifier_expires) identifier_expires )argument_list )call )expression_statement )block )function_definition )module
Save a copy of the object into the cache.
(module (function_definition (function_name_populateFromRow) function_name_populateFromRow (parameters (identifier_self) identifier_self (identifier_referenceSetRecord) identifier_referenceSetRecord )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__dataUrl) identifier__dataUrl )attribute (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_dataurl) identifier_dataurl )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__description) identifier__description )attribute (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_description) identifier_description )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__assemblyId) identifier__assemblyId )attribute (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_assemblyid) identifier_assemblyid )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__isDerived) identifier__isDerived )attribute (call (identifier_bool) identifier_bool (argument_list (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_isderived) identifier_isderived )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__md5checksum) identifier__md5checksum )attribute (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_md5checksum) identifier_md5checksum )attribute )assignment )expression_statement (expression_statement (assignment (identifier_species) identifier_species (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_species) identifier_species )attribute )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_species) identifier_species (None) None )comparison_operator (comparison_operator (identifier_species) identifier_species (string_'null') string_'null' )comparison_operator )boolean_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_setSpeciesFromJson) identifier_setSpeciesFromJson )attribute (argument_list (identifier_species) identifier_species )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__sourceAccessions) identifier__sourceAccessions )attribute (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_sourceaccessions) identifier_sourceaccessions )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__sourceUri) identifier__sourceUri )attribute (attribute (identifier_referenceSetRecord) identifier_referenceSetRecord (identifier_sourceuri) identifier_sourceuri )attribute )assignment )expression_statement )block )function_definition )module
Populates this reference set from the values in the specified DB row.
(module (function_definition (function_name__rev) function_name__rev (parameters (identifier_repo) identifier_repo )parameters (block (try_statement (block (expression_statement (assignment (identifier_repo_info) identifier_repo_info (call (identifier_dict) identifier_dict (argument_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (call (attribute (identifier_CLIENT) identifier_CLIENT (identifier_info) identifier_info )attribute (argument_list (subscript (identifier_repo) identifier_repo (string_'repo') string_'repo' )subscript )argument_list )call )argument_list )call )argument_list )call )assignment )expression_statement )block (except_clause (as_pattern (tuple (attribute (attribute (identifier_pysvn) identifier_pysvn (identifier__pysvn) identifier__pysvn )attribute (identifier_ClientError) identifier_ClientError )attribute (identifier_TypeError) identifier_TypeError (identifier_KeyError) identifier_KeyError (identifier_AttributeError) identifier_AttributeError )tuple (as_pattern_target (identifier_exc) identifier_exc )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_error) identifier_error )attribute (argument_list (concatenated_string (string_'Error retrieving revision ID for svnfs remote %s ') string_'Error retrieving revision ID for svnfs remote %s ' (string_'(cachedir: %s): %s') string_'(cachedir: %s): %s' )concatenated_string (subscript (identifier_repo) identifier_repo (string_'url') string_'url' )subscript (subscript (identifier_repo) identifier_repo (string_'repo') string_'repo' )subscript (identifier_exc) identifier_exc )argument_list )call )expression_statement )block )except_clause (else_clause (block (return_statement (attribute (subscript (identifier_repo_info) identifier_repo_info (string_'revision') string_'revision' )subscript (identifier_number) identifier_number )attribute )return_statement )block )else_clause )try_statement (return_statement (None) None )return_statement )block )function_definition )module
Returns revision ID of repo
(module (function_definition (function_name_prepare) function_name_prepare (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_RequestHandler) identifier_RequestHandler (identifier_self) identifier_self )argument_list )call (identifier_prepare) identifier_prepare )attribute (argument_list )argument_list )call )expression_statement (if_statement (call (attribute (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_request) identifier_request )attribute (identifier_headers) identifier_headers )attribute (identifier_get) identifier_get )attribute (argument_list (string_'content-type') string_'content-type' (string_'') string_'' )argument_list )call (identifier_startswith) identifier_startswith )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_JSON) identifier_JSON )attribute )argument_list )call (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_request) identifier_request )attribute (identifier_body) identifier_body )attribute (call (attribute (identifier_escape) identifier_escape (identifier_json_decode) identifier_json_decode )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_request) identifier_request )attribute (identifier_body) identifier_body )attribute )argument_list )call )assignment )expression_statement )block )if_statement )block )function_definition )module
Prepare the incoming request, checking to see the request is sending JSON content in the request body. If so, the content is decoded and assigned to the json_arguments attribute.
(module (function_definition (function_name_find_config) function_name_find_config (parameters (identifier_directory_or_file) identifier_directory_or_file (default_parameter (identifier_debug) identifier_debug (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_directory_or_file) identifier_directory_or_file (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_realpath) identifier_realpath )attribute (argument_list (identifier_directory_or_file) identifier_directory_or_file )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isfile) identifier_isfile )attribute (argument_list (identifier_directory_or_file) identifier_directory_or_file )argument_list )call (block (if_statement (identifier_debug) identifier_debug (block (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_'using config file {}') string_'using config file {}' (identifier_format) identifier_format )attribute (argument_list (identifier_directory_or_file) identifier_directory_or_file )argument_list )call (keyword_argument (identifier_file) identifier_file (attribute (identifier_sys) identifier_sys (identifier_stderr) identifier_stderr )attribute )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_directory_or_file) identifier_directory_or_file )return_statement )block )if_statement (expression_statement (assignment (identifier_directory) identifier_directory (identifier_directory_or_file) identifier_directory_or_file )assignment )expression_statement (while_statement (identifier_directory) identifier_directory (block (for_statement (identifier_filename) identifier_filename (identifier_CONFIG_FILES) identifier_CONFIG_FILES (block (expression_statement (assignment (identifier_candidate) identifier_candidate (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_directory) identifier_directory (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_candidate) identifier_candidate )argument_list )call (block (if_statement (identifier_debug) identifier_debug (block (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_'using config file {}') string_'using config file {}' (identifier_format) identifier_format )attribute (argument_list (identifier_candidate) identifier_candidate )argument_list )call (keyword_argument (identifier_file) identifier_file (attribute (identifier_sys) identifier_sys (identifier_stderr) identifier_stderr )attribute )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_candidate) identifier_candidate )return_statement )block )if_statement )block )for_statement (expression_statement (assignment (identifier_parent_directory) identifier_parent_directory (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (identifier_directory) identifier_directory )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_parent_directory) identifier_parent_directory (identifier_directory) identifier_directory )comparison_operator (block (break_statement )break_statement )block (else_clause (block (expression_statement (assignment (identifier_directory) identifier_directory (identifier_parent_directory) identifier_parent_directory )assignment )expression_statement )block )else_clause )if_statement )block )while_statement )block )function_definition )module
Return configuration filename. If `directory_or_file` is a file, return the real-path of that file. If it is a directory, find the configuration (any file name in CONFIG_FILES) in that directory or its ancestors.
(module (function_definition (function_name_run) function_name_run (parameters (identifier_self) identifier_self (identifier_host) identifier_host (default_parameter (identifier_port) identifier_port (integer_25) integer_25 )default_parameter (default_parameter (identifier_with_ssl) identifier_with_ssl (False) False )default_parameter )parameters (block (try_statement (block (expression_statement (assignment (identifier_dns_rec) identifier_dns_rec (call (attribute (identifier_self) identifier_self (identifier__lookup) identifier__lookup )attribute (argument_list (identifier_host) identifier_host (identifier_port) identifier_port )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__connect) identifier__connect )attribute (argument_list (identifier_dns_rec) identifier_dns_rec )argument_list )call )expression_statement (if_statement (identifier_with_ssl) identifier_with_ssl (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__wrap_ssl) identifier__wrap_ssl )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_banner) identifier_banner (call (attribute (identifier_self) identifier_self (identifier__get_banner) identifier__get_banner )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__check_banner) identifier__check_banner )attribute (argument_list (identifier_banner) identifier_banner )argument_list )call )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (assignment (pattern_list (identifier_exc_type) identifier_exc_type (identifier_exc_value) identifier_exc_value (identifier_exc_tb) identifier_exc_tb )pattern_list (call (attribute (identifier_sys) identifier_sys (identifier_exc_info) identifier_exc_info )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute (string_'Exception-Type') string_'Exception-Type' )subscript (call (identifier_str) identifier_str (argument_list (attribute (identifier_exc_type) identifier_exc_type (identifier___name__) identifier___name__ )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute (string_'Exception-Value') string_'Exception-Value' )subscript (call (identifier_str) identifier_str (argument_list (identifier_exc_value) identifier_exc_value )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute (string_'Exception-Traceback') string_'Exception-Traceback' )subscript (call (identifier_repr) identifier_repr (argument_list (call (attribute (identifier_traceback) identifier_traceback (identifier_format_exc) identifier_format_exc )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement )block )except_clause (finally_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__close) identifier__close )attribute (argument_list (identifier_with_ssl) identifier_with_ssl )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Executes a single health check against a remote host and port. This method may only be called once per object. :param host: The hostname or IP address of the SMTP server to check. :type host: str :param port: The port number of the SMTP server to check. :type port: int :param with_ssl: If ``True``, SSL will be initiated before attempting to get the banner message. :type with_ssl: bool
(module (function_definition (function_name_launchDashboardOverlay) function_name_launchDashboardOverlay (parameters (identifier_self) identifier_self (identifier_pchAppKey) identifier_pchAppKey )parameters (block (expression_statement (assignment (identifier_fn) identifier_fn (attribute (attribute (identifier_self) identifier_self (identifier_function_table) identifier_function_table )attribute (identifier_launchDashboardOverlay) identifier_launchDashboardOverlay )attribute )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (identifier_fn) identifier_fn (argument_list (identifier_pchAppKey) identifier_pchAppKey )argument_list )call )assignment )expression_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Launches the dashboard overlay application if it is not already running. This call is only valid for dashboard overlay applications.
(module (function_definition (function_name__parse_use) function_name__parse_use (parameters (identifier_self) identifier_self (identifier_string) identifier_string )parameters (block (expression_statement (assignment (identifier_result) identifier_result (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_ruse) identifier_ruse (call (attribute (attribute (identifier_self) identifier_self (identifier_RE_USE) identifier_RE_USE )attribute (identifier_finditer) identifier_finditer )attribute (argument_list (identifier_string) identifier_string )argument_list )call (block (expression_statement (assignment (identifier_name) identifier_name (call (attribute (subscript (call (attribute (call (attribute (identifier_ruse) identifier_ruse (identifier_group) identifier_group )attribute (argument_list (string_"name") string_"name" )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_"!") string_"!" )argument_list )call (integer_0) integer_0 )subscript (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (attribute (identifier_name) identifier_name (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (string_"mpi") string_"mpi" )comparison_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (call (attribute (identifier_ruse) identifier_ruse (identifier_group) identifier_group )attribute (argument_list (string_"only") string_"only" )argument_list )call (block (expression_statement (assignment (identifier_only) identifier_only (call (attribute (call (attribute (identifier_ruse) identifier_ruse (identifier_group) identifier_group )attribute (argument_list (string_"only") string_"only" )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_",") string_"," )argument_list )call )assignment )expression_statement (for_statement (identifier_method) identifier_method (identifier_only) identifier_only (block (expression_statement (assignment (identifier_key) identifier_key (call (attribute (string_"{}.{}") string_"{}.{}" (identifier_format) identifier_format )attribute (argument_list (identifier_name) identifier_name (call (attribute (identifier_method) identifier_method (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__dict_increment) identifier__dict_increment )attribute (argument_list (identifier_result) identifier_result (identifier_key) identifier_key )argument_list )call )expression_statement )block )for_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__dict_increment) identifier__dict_increment )attribute (argument_list (identifier_result) identifier_result (identifier_name) identifier_name )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Extracts use dependencies from the innertext of a module.
(module (function_definition (function_name_sphericalAngSep) function_name_sphericalAngSep (parameters (identifier_ra0) identifier_ra0 (identifier_dec0) identifier_dec0 (identifier_ra1) identifier_ra1 (identifier_dec1) identifier_dec1 (default_parameter (identifier_radians) identifier_radians (False) False )default_parameter )parameters (block (if_statement (comparison_operator (identifier_radians) identifier_radians (False) False )comparison_operator (block (expression_statement (assignment (identifier_ra0) identifier_ra0 (call (attribute (identifier_np) identifier_np (identifier_radians) identifier_radians )attribute (argument_list (identifier_ra0) identifier_ra0 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dec0) identifier_dec0 (call (attribute (identifier_np) identifier_np (identifier_radians) identifier_radians )attribute (argument_list (identifier_dec0) identifier_dec0 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ra1) identifier_ra1 (call (attribute (identifier_np) identifier_np (identifier_radians) identifier_radians )attribute (argument_list (identifier_ra1) identifier_ra1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dec1) identifier_dec1 (call (attribute (identifier_np) identifier_np (identifier_radians) identifier_radians )attribute (argument_list (identifier_dec1) identifier_dec1 )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_deltaRa) identifier_deltaRa (binary_operator (identifier_ra1) identifier_ra1 (identifier_ra0) identifier_ra0 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_deltaDec) identifier_deltaDec (binary_operator (identifier_dec1) identifier_dec1 (identifier_dec0) identifier_dec0 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_val) identifier_val (call (identifier_haversine) identifier_haversine (argument_list (identifier_deltaDec) identifier_deltaDec )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_val) identifier_val (binary_operator (binary_operator (call (attribute (identifier_np) identifier_np (identifier_cos) identifier_cos )attribute (argument_list (identifier_dec0) identifier_dec0 )argument_list )call (call (attribute (identifier_np) identifier_np (identifier_cos) identifier_cos )attribute (argument_list (identifier_dec1) identifier_dec1 )argument_list )call )binary_operator (call (identifier_haversine) identifier_haversine (argument_list (identifier_deltaRa) identifier_deltaRa )argument_list )call )binary_operator )augmented_assignment )expression_statement (expression_statement (assignment (identifier_val) identifier_val (call (identifier_min) identifier_min (argument_list (integer_1) integer_1 (call (attribute (identifier_np) identifier_np (identifier_sqrt) identifier_sqrt )attribute (argument_list (identifier_val) identifier_val )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_val) identifier_val (binary_operator (integer_2) integer_2 (call (attribute (identifier_np) identifier_np (identifier_arcsin) identifier_arcsin )attribute (argument_list (identifier_val) identifier_val )argument_list )call )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_radians) identifier_radians (False) False )comparison_operator (block (expression_statement (assignment (identifier_val) identifier_val (call (attribute (identifier_np) identifier_np (identifier_degrees) identifier_degrees )attribute (argument_list (identifier_val) identifier_val )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_val) identifier_val )return_statement )block )function_definition )module
Compute the spherical angular separation between two points on the sky. //Taken from http://www.movable-type.co.uk/scripts/gis-faq-5.1.html NB: For small distances you can probably use sqrt( dDec**2 + cos^2(dec)*dRa) where dDec = dec1 - dec0 and dRa = ra1 - ra0 and dec1 \approx dec \approx dec0
(module (function_definition (function_name___add_token_annotation_tier) function_name___add_token_annotation_tier (parameters (identifier_self) identifier_self (identifier_tier) identifier_tier )parameters (block (for_statement (pattern_list (identifier_i) identifier_i (identifier_event) identifier_event )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (call (attribute (identifier_tier) identifier_tier (identifier_iter) identifier_iter )attribute (argument_list (string_'event') string_'event' )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_anno_key) identifier_anno_key (call (attribute (string_'{0}:{1}') string_'{0}:{1}' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_ns) identifier_ns )attribute (subscript (attribute (identifier_tier) identifier_tier (identifier_attrib) identifier_attrib )attribute (string_'category') string_'category' )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_anno_val) identifier_anno_val (conditional_expression (attribute (identifier_event) identifier_event (identifier_text) identifier_text )attribute (attribute (identifier_event) identifier_event (identifier_text) identifier_text )attribute (string_'') string_'' )conditional_expression )assignment )expression_statement (expression_statement (assignment (subscript (subscript (attribute (identifier_self) identifier_self (identifier_node) identifier_node )attribute (subscript (attribute (identifier_event) identifier_event (identifier_attrib) identifier_attrib )attribute (string_'start') string_'start' )subscript )subscript (identifier_anno_key) identifier_anno_key )subscript (identifier_anno_val) identifier_anno_val )assignment )expression_statement )block )for_statement )block )function_definition )module
adds a tier to the document graph, in which each event annotates exactly one token.
(module (function_definition (function_name__prepare_value_nd) function_name__prepare_value_nd (parameters (identifier_self) identifier_self (identifier_value) identifier_value (identifier_vshape) identifier_vshape )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (identifier_numeric_types) identifier_numeric_types )argument_list )call (block (expression_statement (assignment (identifier_value_nd) identifier_value_nd (call (identifier_full) identifier_full (argument_list (keyword_argument (identifier_shape) identifier_shape (identifier_vshape) identifier_vshape )keyword_argument (keyword_argument (identifier_val) identifier_val (identifier_value) identifier_value )keyword_argument (keyword_argument (identifier_ctx) identifier_ctx (attribute (identifier_self) identifier_self (identifier_context) identifier_context )attribute )keyword_argument (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_self) identifier_self (identifier_dtype) identifier_dtype )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (identifier_NDArray) identifier_NDArray )argument_list )call (block (expression_statement (assignment (identifier_value_nd) identifier_value_nd (call (attribute (identifier_value) identifier_value (identifier_as_in_context) identifier_as_in_context )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_context) identifier_context )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_value_nd) identifier_value_nd (identifier_dtype) identifier_dtype )attribute (attribute (identifier_self) identifier_self (identifier_dtype) identifier_dtype )attribute )comparison_operator (block (expression_statement (assignment (identifier_value_nd) identifier_value_nd (call (attribute (identifier_value_nd) identifier_value_nd (identifier_astype) identifier_astype )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_dtype) identifier_dtype )attribute )argument_list )call )assignment )expression_statement )block )if_statement )block )elif_clause (else_clause (block (try_statement (block (expression_statement (assignment (identifier_value_nd) identifier_value_nd (call (identifier_array) identifier_array (argument_list (identifier_value) identifier_value (keyword_argument (identifier_ctx) identifier_ctx (attribute (identifier_self) identifier_self (identifier_context) identifier_context )attribute )keyword_argument (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_self) identifier_self (identifier_dtype) identifier_dtype )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block (except_clause (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (binary_operator (concatenated_string (string_'NDArray does not support assignment with non-array-like') string_'NDArray does not support assignment with non-array-like' (string_' object %s of type %s') string_' object %s of type %s' )concatenated_string (tuple (call (identifier_str) identifier_str (argument_list (identifier_value) identifier_value )argument_list )call (call (identifier_str) identifier_str (argument_list (call (identifier_type) identifier_type (argument_list (identifier_value) identifier_value )argument_list )call )argument_list )call )tuple )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )else_clause )if_statement (if_statement (comparison_operator (attribute (identifier_value_nd) identifier_value_nd (identifier_shape) identifier_shape )attribute (identifier_vshape) identifier_vshape )comparison_operator (block (expression_statement (assignment (identifier_value_nd) identifier_value_nd (call (attribute (identifier_value_nd) identifier_value_nd (identifier_broadcast_to) identifier_broadcast_to )attribute (argument_list (identifier_vshape) identifier_vshape )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_value_nd) identifier_value_nd )return_statement )block )function_definition )module
Given value and vshape, create an `NDArray` from value with the same context and dtype as the current one and broadcast it to vshape.
(module (function_definition (function_name__read_stderr) function_name__read_stderr (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_f) identifier_f (call (identifier_open) identifier_open (argument_list (attribute (identifier_self) identifier_self (identifier_stderr_file) identifier_stderr_file )attribute (string_'rb') string_'rb' )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_stderr_text) identifier_stderr_text (call (attribute (identifier_f) identifier_f (identifier_read) identifier_read )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_stderr_text) identifier_stderr_text )not_operator (block (return_statement (string_'') string_'' )return_statement )block )if_statement (expression_statement (assignment (identifier_encoding) identifier_encoding (call (identifier_get_coding) identifier_get_coding (argument_list (identifier_stderr_text) identifier_stderr_text )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_stderr_text) identifier_stderr_text (call (identifier_to_text_string) identifier_to_text_string (argument_list (identifier_stderr_text) identifier_stderr_text (identifier_encoding) identifier_encoding )argument_list )call )assignment )expression_statement (return_statement (identifier_stderr_text) identifier_stderr_text )return_statement )block (finally_clause (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Read the stderr file of the kernel.
(module (function_definition (function_name_internal_get_description) function_name_internal_get_description (parameters (identifier_dbg) identifier_dbg (identifier_seq) identifier_seq (identifier_thread_id) identifier_thread_id (identifier_frame_id) identifier_frame_id (identifier_expression) identifier_expression )parameters (block (try_statement (block (expression_statement (assignment (identifier_frame) identifier_frame (call (attribute (identifier_dbg) identifier_dbg (identifier_find_frame) identifier_find_frame )attribute (argument_list (identifier_thread_id) identifier_thread_id (identifier_frame_id) identifier_frame_id )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_description) identifier_description (call (attribute (identifier_pydevd_console) identifier_pydevd_console (identifier_get_description) identifier_get_description )attribute (argument_list (identifier_frame) identifier_frame (identifier_thread_id) identifier_thread_id (identifier_frame_id) identifier_frame_id (identifier_expression) identifier_expression )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_description) identifier_description (call (attribute (identifier_pydevd_xml) identifier_pydevd_xml (identifier_make_valid_xml_value) identifier_make_valid_xml_value )attribute (argument_list (call (identifier_quote) identifier_quote (argument_list (identifier_description) identifier_description (string_'/>_= \t') string_'/>_= \t' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_description_xml) identifier_description_xml (binary_operator (string_'<xml><var name="" type="" value="%s"/></xml>') string_'<xml><var name="" type="" value="%s"/></xml>' (identifier_description) identifier_description )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_cmd) identifier_cmd (call (attribute (attribute (identifier_dbg) identifier_dbg (identifier_cmd_factory) identifier_cmd_factory )attribute (identifier_make_get_description_message) identifier_make_get_description_message )attribute (argument_list (identifier_seq) identifier_seq (identifier_description_xml) identifier_description_xml )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_dbg) identifier_dbg (identifier_writer) identifier_writer )attribute (identifier_add_command) identifier_add_command )attribute (argument_list (identifier_cmd) identifier_cmd )argument_list )call )expression_statement )block (except_clause (block (expression_statement (assignment (identifier_exc) identifier_exc (call (identifier_get_exception_traceback_str) identifier_get_exception_traceback_str (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cmd) identifier_cmd (call (attribute (attribute (identifier_dbg) identifier_dbg (identifier_cmd_factory) identifier_cmd_factory )attribute (identifier_make_error_message) identifier_make_error_message )attribute (argument_list (identifier_seq) identifier_seq (binary_operator (string_"Error in fetching description") string_"Error in fetching description" (identifier_exc) identifier_exc )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_dbg) identifier_dbg (identifier_writer) identifier_writer )attribute (identifier_add_command) identifier_add_command )attribute (argument_list (identifier_cmd) identifier_cmd )argument_list )call )expression_statement )block )except_clause )try_statement )block )function_definition )module
Fetch the variable description stub from the debug console
(module (function_definition (function_name_get_epoch_namespace_lifetime_grace_period) function_name_get_epoch_namespace_lifetime_grace_period (parameters (identifier_block_height) identifier_block_height (identifier_namespace_id) identifier_namespace_id )parameters (block (expression_statement (assignment (identifier_epoch_config) identifier_epoch_config (call (identifier_get_epoch_config) identifier_get_epoch_config (argument_list (identifier_block_height) identifier_block_height )argument_list )call )assignment )expression_statement (if_statement (call (attribute (subscript (identifier_epoch_config) identifier_epoch_config (string_'namespaces') string_'namespaces' )subscript (identifier_has_key) identifier_has_key )attribute (argument_list (identifier_namespace_id) identifier_namespace_id )argument_list )call (block (return_statement (subscript (subscript (subscript (identifier_epoch_config) identifier_epoch_config (string_'namespaces') string_'namespaces' )subscript (identifier_namespace_id) identifier_namespace_id )subscript (string_'NAMESPACE_LIFETIME_GRACE_PERIOD') string_'NAMESPACE_LIFETIME_GRACE_PERIOD' )subscript )return_statement )block (else_clause (block (return_statement (subscript (subscript (subscript (identifier_epoch_config) identifier_epoch_config (string_'namespaces') string_'namespaces' )subscript (string_'*') string_'*' )subscript (string_'NAMESPACE_LIFETIME_GRACE_PERIOD') string_'NAMESPACE_LIFETIME_GRACE_PERIOD' )subscript )return_statement )block )else_clause )if_statement )block )function_definition )module
what's the namespace lifetime grace period for this epoch?
(module (function_definition (function_name_promise) function_name_promise (parameters (identifier_cls) identifier_cls (identifier_fn) identifier_fn (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_task) identifier_task (call (attribute (identifier_cls) identifier_cls (identifier_task) identifier_task )attribute (argument_list (keyword_argument (identifier_target) identifier_target (identifier_fn) identifier_fn )keyword_argument (keyword_argument (identifier_args) identifier_args (identifier_args) identifier_args )keyword_argument (keyword_argument (identifier_kwargs) identifier_kwargs (identifier_kwargs) identifier_kwargs )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_task) identifier_task (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (return_statement (identifier_task) identifier_task )return_statement )block )function_definition )module
Used to build a task based on a callable function and the arguments. Kick it off and start execution of the task. :param fn: callable :param args: tuple :param kwargs: dict :return: SynchronousTask or AsynchronousTask
(module (function_definition (function_name_tuple_of) function_name_tuple_of (parameters (list_splat_pattern (identifier_generators) identifier_generators )list_splat_pattern )parameters (block (class_definition (identifier_TupleOfGenerators) identifier_TupleOfGenerators (argument_list (identifier_ArbitraryInterface) identifier_ArbitraryInterface )argument_list (block (decorated_definition (decorator (identifier_classmethod) identifier_classmethod )decorator (function_definition (function_name_arbitrary) function_name_arbitrary (parameters (identifier_cls) identifier_cls )parameters (block (return_statement (call (identifier_tuple) identifier_tuple (argument_list (list_comprehension (call (identifier_arbitrary) identifier_arbitrary (argument_list (identifier_generator) identifier_generator )argument_list )call (for_in_clause (identifier_generator) identifier_generator (identifier_generators) identifier_generators )for_in_clause (if_clause (comparison_operator (identifier_generator) identifier_generator (identifier_tuple) identifier_tuple )comparison_operator )if_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )decorated_definition )block )class_definition (expression_statement (assignment (attribute (identifier_TupleOfGenerators) identifier_TupleOfGenerators (identifier___name__) identifier___name__ )attribute (call (attribute (string_'') string_'' (identifier_join) identifier_join )attribute (argument_list (list (string_'tuple_of(') string_'tuple_of(' (call (attribute (string_', ') string_', ' (identifier_join) identifier_join )attribute (generator_expression (attribute (identifier_generator) identifier_generator (identifier___name__) identifier___name__ )attribute (for_in_clause (identifier_generator) identifier_generator (identifier_generators) identifier_generators )for_in_clause )generator_expression )call (string_')') string_')' )list )argument_list )call )assignment )expression_statement (return_statement (identifier_TupleOfGenerators) identifier_TupleOfGenerators )return_statement )block )function_definition )module
Generates a tuple by generating values for each of the specified generators. This is a class factory, it makes a class which is a closure around the specified generators.
(module (function_definition (function_name_make_ttv_yaml) function_name_make_ttv_yaml (parameters (identifier_corpora) identifier_corpora (identifier_path_to_ttv_file) identifier_path_to_ttv_file (default_parameter (identifier_ttv_ratio) identifier_ttv_ratio (identifier_DEFAULT_TTV_RATIO) identifier_DEFAULT_TTV_RATIO )default_parameter (default_parameter (identifier_deterministic) identifier_deterministic (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_dataset) identifier_dataset (call (identifier_get_dataset) identifier_get_dataset (argument_list (identifier_corpora) identifier_corpora )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_data_sets) identifier_data_sets (call (identifier_make_ttv) identifier_make_ttv (argument_list (identifier_dataset) identifier_dataset (keyword_argument (identifier_ttv_ratio) identifier_ttv_ratio (identifier_ttv_ratio) identifier_ttv_ratio )keyword_argument (keyword_argument (identifier_deterministic) identifier_deterministic (identifier_deterministic) identifier_deterministic )keyword_argument )argument_list )call )assignment )expression_statement (function_definition (function_name_get_for_ttv) function_name_get_for_ttv (parameters (identifier_key) identifier_key )parameters (block (return_statement (tuple (subscript (subscript (identifier_data_sets) identifier_data_sets (string_'test') string_'test' )subscript (identifier_key) identifier_key )subscript (subscript (subscript (identifier_data_sets) identifier_data_sets (string_'train') string_'train' )subscript (identifier_key) identifier_key )subscript (subscript (subscript (identifier_data_sets) identifier_data_sets (string_'validation') string_'validation' )subscript (identifier_key) identifier_key )subscript )tuple )return_statement )block )function_definition (expression_statement (assignment (pattern_list (identifier_test) identifier_test (identifier_train) identifier_train (identifier_validation) identifier_validation )pattern_list (call (identifier_get_for_ttv) identifier_get_for_ttv (argument_list (string_'paths') string_'paths' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_number_of_files_for_each_set) identifier_number_of_files_for_each_set (call (identifier_list) identifier_list (argument_list (call (identifier_get_for_ttv) identifier_get_for_ttv (argument_list (string_'number_of_files') string_'number_of_files' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_number_of_subjects_for_each_set) identifier_number_of_subjects_for_each_set (list_comprehension (call (identifier_len) identifier_len (argument_list (identifier_x) identifier_x )argument_list )call (for_in_clause (identifier_x) identifier_x (call (identifier_get_for_ttv) identifier_get_for_ttv (argument_list (string_'subjects') string_'subjects' )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_dict_for_yaml) identifier_dict_for_yaml (dictionary (pair (string_'split') string_'split' (identifier_number_of_files_for_each_set) identifier_number_of_files_for_each_set )pair (pair (string_'subject_split') string_'subject_split' (identifier_number_of_subjects_for_each_set) identifier_number_of_subjects_for_each_set )pair (pair (string_"test") string_"test" (identifier_test) identifier_test )pair (pair (string_"train") string_"train" (identifier_train) identifier_train )pair (pair (string_"validation") string_"validation" (identifier_validation) identifier_validation )pair )dictionary )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_path_to_ttv_file) identifier_path_to_ttv_file (string_'w') string_'w' )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_yaml) identifier_yaml (identifier_dump) identifier_dump )attribute (argument_list (identifier_dict_for_yaml) identifier_dict_for_yaml (identifier_f) identifier_f (keyword_argument (identifier_default_flow_style) identifier_default_flow_style (False) False )keyword_argument )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Create a test, train, validation from the corpora given and saves it as a YAML filename. Each set will be subject independent, meaning that no one subject can have data in more than one set # Arguments; corpora: a list of the paths to corpora used (these have to be formatted accoring to notes.md) path_to_ttv_file: the path to where the YAML file be be saved ttv_ratio: a tuple (e.g. (1,4,4) of the relative sizoe of each set) deterministic: whether or not to shuffle the resources around when making the set.
(module (function_definition (function_name_verify_logout_request) function_name_verify_logout_request (parameters (identifier_cls) identifier_cls (identifier_logout_request) identifier_logout_request (identifier_ticket) identifier_ticket )parameters (block (try_statement (block (expression_statement (assignment (identifier_session_index) identifier_session_index (call (attribute (identifier_cls) identifier_cls (identifier_get_saml_slos) identifier_get_saml_slos )attribute (argument_list (identifier_logout_request) identifier_logout_request )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_session_index) identifier_session_index (attribute (subscript (identifier_session_index) identifier_session_index (integer_0) integer_0 )subscript (identifier_text) identifier_text )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_session_index) identifier_session_index (identifier_ticket) identifier_ticket )comparison_operator (block (return_statement (True) True )return_statement )block (else_clause (block (return_statement (False) False )return_statement )block )else_clause )if_statement )block (except_clause (tuple (identifier_AttributeError) identifier_AttributeError (identifier_IndexError) identifier_IndexError )tuple (block (return_statement (False) False )return_statement )block )except_clause )try_statement )block )function_definition )module
verifies the single logout request came from the CAS server returns True if the logout_request is valid, False otherwise
(module (function_definition (function_name_matrix) function_name_matrix (parameters (identifier_ctx) identifier_ctx (identifier_scenario_name) identifier_scenario_name (identifier_subcommand) identifier_subcommand )parameters (block (expression_statement (assignment (identifier_args) identifier_args (call (attribute (attribute (identifier_ctx) identifier_ctx (identifier_obj) identifier_obj )attribute (identifier_get) identifier_get )attribute (argument_list (string_'args') string_'args' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_command_args) identifier_command_args (dictionary (pair (string_'subcommand') string_'subcommand' (identifier_subcommand) identifier_subcommand )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_scenarios) identifier_scenarios (identifier_Scenarios) identifier_Scenarios )attribute (argument_list (call (attribute (identifier_base) identifier_base (identifier_get_configs) identifier_get_configs )attribute (argument_list (identifier_args) identifier_args (identifier_command_args) identifier_command_args )argument_list )call (identifier_scenario_name) identifier_scenario_name )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_s) identifier_s (identifier_print_matrix) identifier_print_matrix )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
List matrix of steps used to test instances.
(module (function_definition (function_name_validate) function_name_validate (parameters (identifier_self) identifier_self (identifier_val) identifier_val )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_validation) identifier_validation )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_type) identifier_type )attribute (identifier_validate) identifier_validate )attribute (argument_list (identifier_val) identifier_val )argument_list )call )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_custom_validator) identifier_custom_validator )attribute (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_custom_validator) identifier_custom_validator )attribute (argument_list (identifier_val) identifier_val )argument_list )call )expression_statement )block )if_statement )block )if_statement (return_statement (True) True )return_statement )block )function_definition )module
Validate values according to the requirement
(module (function_definition (function_name_request_with_retries_on_post_search) function_name_request_with_retries_on_post_search (parameters (identifier_self) identifier_self (identifier_session) identifier_session (identifier_url) identifier_url (identifier_query) identifier_query (identifier_json_input) identifier_json_input (identifier_stream) identifier_stream (identifier_headers) identifier_headers )parameters (block (expression_statement (assignment (identifier_status_code) identifier_status_code (integer_500) integer_500 )assignment )expression_statement (if_statement (comparison_operator (string_'/v1/search') string_'/v1/search' (identifier_url) identifier_url )comparison_operator (block (expression_statement (assignment (identifier_retry_count) identifier_retry_count (integer_10) integer_10 )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_retry_count) identifier_retry_count (integer_1) integer_1 )assignment )expression_statement )block )else_clause )if_statement (while_statement (boolean_operator (comparison_operator (identifier_status_code) identifier_status_code (tuple (integer_500) integer_500 (integer_502) integer_502 (integer_503) integer_503 (integer_504) integer_504 )tuple )comparison_operator (comparison_operator (identifier_retry_count) identifier_retry_count (integer_0) integer_0 )comparison_operator )boolean_operator (block (try_statement (block (expression_statement (augmented_assignment (identifier_retry_count) identifier_retry_count (integer_1) integer_1 )augmented_assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (call (attribute (identifier_session) identifier_session (identifier_request) identifier_request )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_http_method) identifier_http_method )attribute (identifier_url) identifier_url (keyword_argument (identifier_params) identifier_params (identifier_query) identifier_query )keyword_argument (keyword_argument (identifier_json) identifier_json (identifier_json_input) identifier_json_input )keyword_argument (keyword_argument (identifier_stream) identifier_stream (identifier_stream) identifier_stream )keyword_argument (keyword_argument (identifier_headers) identifier_headers (identifier_headers) identifier_headers )keyword_argument (keyword_argument (identifier_timeout) identifier_timeout (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_timeout_policy) identifier_timeout_policy )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_status_code) identifier_status_code (attribute (identifier_res) identifier_res (identifier_status_code) identifier_status_code )attribute )assignment )expression_statement )block (except_clause (identifier_SwaggerAPIException) identifier_SwaggerAPIException (block (if_statement (comparison_operator (identifier_retry_count) identifier_retry_count (integer_0) integer_0 )comparison_operator (block (pass_statement )pass_statement )block (else_clause (block (raise_statement )raise_statement )block )else_clause )if_statement )block )except_clause )try_statement )block )while_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
Submit a request and retry POST search requests specifically. We don't currently retry on POST requests, and this is intended as a temporary fix until the swagger is updated and changes applied to prod. In the meantime, this function will add retries specifically for POST search (and any other POST requests will not be retried).
(module (function_definition (function_name_get_active_keys_to_keycode_list) function_name_get_active_keys_to_keycode_list (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (expression_statement (attribute (identifier__libxdo) identifier__libxdo (identifier_xdo_get_active_keys_to_keycode_list) identifier_xdo_get_active_keys_to_keycode_list )attribute )expression_statement )block (except_clause (identifier_AttributeError) identifier_AttributeError (block (raise_statement (call (identifier_NotImplementedError) identifier_NotImplementedError (argument_list )argument_list )call )raise_statement )block )except_clause )try_statement (expression_statement (assignment (identifier_keys) identifier_keys (call (identifier_POINTER) identifier_POINTER (argument_list (identifier_charcodemap_t) identifier_charcodemap_t )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_nkeys) identifier_nkeys (call (attribute (identifier_ctypes) identifier_ctypes (identifier_c_int) identifier_c_int )attribute (argument_list (integer_0) integer_0 )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier__libxdo) identifier__libxdo (identifier_xdo_get_active_keys_to_keycode_list) identifier_xdo_get_active_keys_to_keycode_list )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__xdo) identifier__xdo )attribute (call (attribute (identifier_ctypes) identifier_ctypes (identifier_byref) identifier_byref )attribute (argument_list (identifier_keys) identifier_keys )argument_list )call (call (attribute (identifier_ctypes) identifier_ctypes (identifier_byref) identifier_byref )attribute (argument_list (identifier_nkeys) identifier_nkeys )argument_list )call )argument_list )call )expression_statement (return_statement (attribute (identifier_keys) identifier_keys (identifier_value) identifier_value )attribute )return_statement )block )function_definition )module
Get a list of active keys. Uses XQueryKeymap
(module (function_definition (function_name_log) function_name_log (parameters (identifier_self) identifier_self (identifier_level) identifier_level (identifier_message) identifier_message )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_log_fd) identifier_log_fd )attribute (None) None )comparison_operator (block (expression_statement (assignment (identifier_prefix) identifier_prefix (call (attribute (identifier_struct) identifier_struct (identifier_pack) identifier_pack )attribute (argument_list (string_'ii') string_'ii' (identifier_level) identifier_level (call (identifier_len) identifier_len (argument_list (identifier_message) identifier_message )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_os) identifier_os (identifier_write) identifier_write )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_log_fd) identifier_log_fd )attribute (identifier_prefix) identifier_prefix )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_os) identifier_os (identifier_write) identifier_write )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_log_fd) identifier_log_fd )attribute (identifier_message) identifier_message )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Write a log message via the child process. The child process must already exist; call :meth:`live_log_child` to make sure. If it has died in a way we don't expect then this will raise :const:`signal.SIGPIPE`.
(module (function_definition (function_name__postrun) function_name__postrun (parameters (identifier_self) identifier_self (identifier_result) identifier_result )parameters (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (call (attribute (string_"{}.PostRun: {}[{}]") string_"{}.PostRun: {}[{}]" (identifier_format) identifier_format )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier___name__) identifier___name__ )attribute (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier_path) identifier_path )attribute (attribute (identifier_self) identifier_self (identifier_uuid) identifier_uuid )attribute )argument_list )call (keyword_argument (identifier_extra) identifier_extra (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_kmsg) identifier_kmsg (call (attribute (call (identifier_Message) identifier_Message (argument_list (attribute (identifier_self) identifier_self (identifier_uuid) identifier_uuid )attribute (keyword_argument (identifier_entrypoint) identifier_entrypoint (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier_path) identifier_path )attribute )keyword_argument (keyword_argument (identifier_params) identifier_params (attribute (identifier_self) identifier_self (identifier_params) identifier_params )attribute )keyword_argument (keyword_argument (identifier_metadata) identifier_metadata (attribute (identifier_self) identifier_self (identifier_metadata) identifier_metadata )attribute )keyword_argument )argument_list )call (identifier_dump) identifier_dump )attribute (argument_list )argument_list )call )keyword_argument )argument_list )call )keyword_argument )argument_list )call )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_postrun) identifier_postrun )attribute (argument_list (identifier_result) identifier_result )argument_list )call )return_statement )block )function_definition )module
To execute after exection :param kser.result.Result result: Execution result :return: Execution result :rtype: kser.result.Result
(module (function_definition (function_name_use_db) function_name_use_db (parameters (identifier_path) identifier_path (default_parameter (identifier_mode) identifier_mode (attribute (attribute (identifier_WorkDB) identifier_WorkDB (identifier_Mode) identifier_Mode )attribute (identifier_create) identifier_create )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_database) identifier_database (call (identifier_WorkDB) identifier_WorkDB (argument_list (identifier_path) identifier_path (identifier_mode) identifier_mode )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (yield (identifier_database) identifier_database )yield )expression_statement )block (finally_clause (block (expression_statement (call (attribute (identifier_database) identifier_database (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Open a DB in file `path` in mode `mode` as a context manager. On exiting the context the DB will be automatically closed. Args: path: The path to the DB file. mode: The mode in which to open the DB. See the `Mode` enum for details. Raises: FileNotFoundError: If `mode` is `Mode.open` and `path` does not exist.
(module (function_definition (function_name_reject_entry) function_name_reject_entry (parameters (identifier_request) identifier_request (identifier_entry_id) identifier_entry_id )parameters (block (expression_statement (assignment (identifier_return_url) identifier_return_url (call (attribute (attribute (identifier_request) identifier_request (identifier_GET) identifier_GET )attribute (identifier_get) identifier_get )attribute (argument_list (string_'next') string_'next' (call (identifier_reverse) identifier_reverse (argument_list (string_'dashboard') string_'dashboard' )argument_list )call )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_entry) identifier_entry (call (attribute (attribute (identifier_Entry) identifier_Entry (identifier_no_join) identifier_no_join )attribute (identifier_get) identifier_get )attribute (argument_list (keyword_argument (identifier_pk) identifier_pk (identifier_entry_id) identifier_entry_id )keyword_argument )argument_list )call )assignment )expression_statement )block (except_clause (block (expression_statement (assignment (identifier_message) identifier_message (string_'No such log entry.') string_'No such log entry.' )assignment )expression_statement (expression_statement (call (attribute (identifier_messages) identifier_messages (identifier_error) identifier_error )attribute (argument_list (identifier_request) identifier_request (identifier_message) identifier_message )argument_list )call )expression_statement (return_statement (call (identifier_redirect) identifier_redirect (argument_list (identifier_return_url) identifier_return_url )argument_list )call )return_statement )block )except_clause )try_statement (if_statement (boolean_operator (comparison_operator (attribute (identifier_entry) identifier_entry (identifier_status) identifier_status )attribute (attribute (identifier_Entry) identifier_Entry (identifier_UNVERIFIED) identifier_UNVERIFIED )attribute )comparison_operator (comparison_operator (attribute (identifier_entry) identifier_entry (identifier_status) identifier_status )attribute (attribute (identifier_Entry) identifier_Entry (identifier_INVOICED) identifier_INVOICED )attribute )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_msg_text) identifier_msg_text (string_'This entry is unverified or is already invoiced.') string_'This entry is unverified or is already invoiced.' )assignment )expression_statement (expression_statement (call (attribute (identifier_messages) identifier_messages (identifier_error) identifier_error )attribute (argument_list (identifier_request) identifier_request (identifier_msg_text) identifier_msg_text )argument_list )call )expression_statement (return_statement (call (identifier_redirect) identifier_redirect (argument_list (identifier_return_url) identifier_return_url )argument_list )call )return_statement )block )if_statement (if_statement (call (attribute (attribute (identifier_request) identifier_request (identifier_POST) identifier_POST )attribute (identifier_get) identifier_get )attribute (argument_list (string_'Yes') string_'Yes' )argument_list )call (block (expression_statement (assignment (attribute (identifier_entry) identifier_entry (identifier_status) identifier_status )attribute (attribute (identifier_Entry) identifier_Entry (identifier_UNVERIFIED) identifier_UNVERIFIED )attribute )assignment )expression_statement (expression_statement (call (attribute (identifier_entry) identifier_entry (identifier_save) identifier_save )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_msg_text) identifier_msg_text (string_'The entry\'s status was set to unverified.') string_'The entry\'s status was set to unverified.' )assignment )expression_statement (expression_statement (call (attribute (identifier_messages) identifier_messages (identifier_info) identifier_info )attribute (argument_list (identifier_request) identifier_request (identifier_msg_text) identifier_msg_text )argument_list )call )expression_statement (return_statement (call (identifier_redirect) identifier_redirect (argument_list (identifier_return_url) identifier_return_url )argument_list )call )return_statement )block )if_statement (return_statement (call (identifier_render) identifier_render (argument_list (identifier_request) identifier_request (string_'timepiece/entry/reject.html') string_'timepiece/entry/reject.html' (dictionary (pair (string_'entry') string_'entry' (identifier_entry) identifier_entry )pair (pair (string_'next') string_'next' (call (attribute (attribute (identifier_request) identifier_request (identifier_GET) identifier_GET )attribute (identifier_get) identifier_get )attribute (argument_list (string_'next') string_'next' )argument_list )call )pair )dictionary )argument_list )call )return_statement )block )function_definition )module
Admins can reject an entry that has been verified or approved but not invoiced to set its status to 'unverified' for the user to fix.
(module (function_definition (function_name_list_changes) function_name_list_changes (parameters (identifier_self) identifier_self )parameters (block (if_statement (not_operator (call (attribute (identifier_self) identifier_self (identifier_is_attached) identifier_is_attached )attribute (argument_list )argument_list )call )not_operator (block (raise_statement (call (identifier_ItsdbError) identifier_ItsdbError (argument_list (string_'changes are not tracked for detached tables.') string_'changes are not tracked for detached tables.' )argument_list )call )raise_statement )block )if_statement (return_statement (list_comprehension (tuple (identifier_i) identifier_i (subscript (identifier_self) identifier_self (identifier_i) identifier_i )subscript )tuple (for_in_clause (pattern_list (identifier_i) identifier_i (identifier_row) identifier_row )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (attribute (identifier_self) identifier_self (identifier__records) identifier__records )attribute )argument_list )call )for_in_clause (if_clause (comparison_operator (identifier_row) identifier_row (None) None )comparison_operator )if_clause )list_comprehension )return_statement )block )function_definition )module
Return a list of modified records. This is only applicable for attached tables. Returns: A list of `(row_index, record)` tuples of modified records Raises: :class:`delphin.exceptions.ItsdbError`: when called on a detached table
(module (function_definition (function_name_decode) function_name_decode (parameters (identifier_addr) identifier_addr )parameters (block (expression_statement (assignment (pattern_list (identifier_hrpgot) identifier_hrpgot (identifier_data) identifier_data )pattern_list (call (identifier_bech32_decode) identifier_bech32_decode (argument_list (identifier_addr) identifier_addr )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_hrpgot) identifier_hrpgot (identifier_BECH32_VERSION_SET) identifier_BECH32_VERSION_SET )comparison_operator (block (return_statement (tuple (None) None (None) None )tuple )return_statement )block )if_statement (expression_statement (assignment (identifier_decoded) identifier_decoded (call (identifier_convertbits) identifier_convertbits (argument_list (subscript (identifier_data) identifier_data (slice (integer_1) integer_1 (colon) colon )slice )subscript (integer_5) integer_5 (integer_8) integer_8 (False) False )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (boolean_operator (comparison_operator (identifier_decoded) identifier_decoded (None) None )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_decoded) identifier_decoded )argument_list )call (integer_2) integer_2 )comparison_operator )boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_decoded) identifier_decoded )argument_list )call (integer_40) integer_40 )comparison_operator )boolean_operator (block (return_statement (tuple (None) None (None) None )tuple )return_statement )block )if_statement (if_statement (comparison_operator (subscript (identifier_data) identifier_data (integer_0) integer_0 )subscript (integer_16) integer_16 )comparison_operator (block (return_statement (tuple (None) None (None) None )tuple )return_statement )block )if_statement (if_statement (boolean_operator (boolean_operator (comparison_operator (subscript (identifier_data) identifier_data (integer_0) integer_0 )subscript (integer_0) integer_0 )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_decoded) identifier_decoded )argument_list )call (integer_20) integer_20 )comparison_operator )boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_decoded) identifier_decoded )argument_list )call (integer_32) integer_32 )comparison_operator )boolean_operator (block (return_statement (tuple (None) None (None) None )tuple )return_statement )block )if_statement (return_statement (tuple (subscript (identifier_data) identifier_data (integer_0) integer_0 )subscript (identifier_decoded) identifier_decoded )tuple )return_statement )block )function_definition )module
Decode a segwit address.
(module (function_definition (function_name_asQuartusTcl) function_name_asQuartusTcl (parameters (identifier_self) identifier_self (typed_parameter (identifier_buff) identifier_buff (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_version) identifier_version (type (identifier_str) identifier_str )type )typed_parameter (typed_parameter (identifier_component) identifier_component (type (string_"Component") string_"Component" )type )typed_parameter (typed_parameter (identifier_packager) identifier_packager (type (string_"IpPackager") string_"IpPackager" )type )typed_parameter (typed_parameter (identifier_thisIf) identifier_thisIf (type (string_'Interface') string_'Interface' )type )typed_parameter )parameters (block (expression_statement (assignment (identifier_name) identifier_name (call (attribute (identifier_packager) identifier_packager (identifier_getInterfaceLogicalName) identifier_getInterfaceLogicalName )attribute (argument_list (identifier_thisIf) identifier_thisIf )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_quartus_tcl_add_interface) identifier_quartus_tcl_add_interface )attribute (argument_list (identifier_buff) identifier_buff (identifier_thisIf) identifier_thisIf (identifier_packager) identifier_packager )argument_list )call )expression_statement (expression_statement (assignment (identifier_clk) identifier_clk (call (attribute (identifier_thisIf) identifier_thisIf (identifier__getAssociatedClk) identifier__getAssociatedClk )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_clk) identifier_clk (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_quartus_prop) identifier_quartus_prop )attribute (argument_list (identifier_buff) identifier_buff (identifier_name) identifier_name (string_"associatedClock") string_"associatedClock" (attribute (attribute (identifier_clk) identifier_clk (identifier__sigInside) identifier__sigInside )attribute (identifier_name) identifier_name )attribute (keyword_argument (identifier_escapeStr) identifier_escapeStr (False) False )keyword_argument )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_rst) identifier_rst (call (attribute (identifier_thisIf) identifier_thisIf (identifier__getAssociatedRst) identifier__getAssociatedRst )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_rst) identifier_rst (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_quartus_prop) identifier_quartus_prop )attribute (argument_list (identifier_buff) identifier_buff (identifier_name) identifier_name (string_"associatedReset") string_"associatedReset" (attribute (attribute (identifier_rst) identifier_rst (identifier__sigInside) identifier__sigInside )attribute (identifier_name) identifier_name )attribute (keyword_argument (identifier_escapeStr) identifier_escapeStr (False) False )keyword_argument )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_m) identifier_m (call (attribute (identifier_self) identifier_self (identifier_get_quartus_map) identifier_get_quartus_map )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (identifier_m) identifier_m (block (expression_statement (assignment (identifier_intfMapOrName) identifier_intfMapOrName (identifier_m) identifier_m )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_intfMapOrName) identifier_intfMapOrName (attribute (identifier_thisIf) identifier_thisIf (identifier_name) identifier_name )attribute )assignment )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__asQuartusTcl) identifier__asQuartusTcl )attribute (argument_list (identifier_buff) identifier_buff (identifier_version) identifier_version (identifier_name) identifier_name (identifier_component) identifier_component (identifier_packager) identifier_packager (identifier_thisIf) identifier_thisIf (identifier_intfMapOrName) identifier_intfMapOrName )argument_list )call )expression_statement )block )function_definition )module
Add interface to Quartus tcl :param buff: line buffer for output :param version: Quartus version :param intfName: name of top interface :param component: component object from ipcore generator :param packager: instance of IpPackager which is packagin current design :param allInterfaces: list of all interfaces of top unit :param thisIf: interface to add into Quartus TCL
(module (function_definition (function_name_hasnew) function_name_hasnew (parameters (identifier_self) identifier_self (default_parameter (identifier_allowempty) identifier_allowempty (False) False )default_parameter )parameters (block (for_statement (identifier_e) identifier_e (call (attribute (identifier_self) identifier_self (identifier_select) identifier_select )attribute (argument_list (identifier_New) identifier_New (None) None (False) False (False) False )argument_list )call (block (if_statement (boolean_operator (not_operator (identifier_allowempty) identifier_allowempty )not_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_e) identifier_e )argument_list )call (integer_0) integer_0 )comparison_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (return_statement (True) True )return_statement )block )for_statement (return_statement (False) False )return_statement )block )function_definition )module
Does the correction define new corrected annotations?
(module (function_definition (function_name_MakeOdds) function_name_MakeOdds (parameters (identifier_self) identifier_self )parameters (block (for_statement (pattern_list (identifier_hypo) identifier_hypo (identifier_prob) identifier_prob )pattern_list (call (attribute (identifier_self) identifier_self (identifier_Items) identifier_Items )attribute (argument_list )argument_list )call (block (if_statement (identifier_prob) identifier_prob (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_Set) identifier_Set )attribute (argument_list (identifier_hypo) identifier_hypo (call (identifier_Odds) identifier_Odds (argument_list (identifier_prob) identifier_prob )argument_list )call )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_Remove) identifier_Remove )attribute (argument_list (identifier_hypo) identifier_hypo )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Transforms from probabilities to odds. Values with prob=0 are removed.
(module (function_definition (function_name_get_self_host) function_name_get_self_host (parameters (identifier_request_data) identifier_request_data )parameters (block (if_statement (comparison_operator (string_'http_host') string_'http_host' (identifier_request_data) identifier_request_data )comparison_operator (block (expression_statement (assignment (identifier_current_host) identifier_current_host (subscript (identifier_request_data) identifier_request_data (string_'http_host') string_'http_host' )subscript )assignment )expression_statement )block (elif_clause (comparison_operator (string_'server_name') string_'server_name' (identifier_request_data) identifier_request_data )comparison_operator (block (expression_statement (assignment (identifier_current_host) identifier_current_host (subscript (identifier_request_data) identifier_request_data (string_'server_name') string_'server_name' )subscript )assignment )expression_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_'No hostname defined') string_'No hostname defined' )argument_list )call )raise_statement )block )else_clause )if_statement (if_statement (comparison_operator (string_':') string_':' (identifier_current_host) identifier_current_host )comparison_operator (block (expression_statement (assignment (identifier_current_host_data) identifier_current_host_data (call (attribute (identifier_current_host) identifier_current_host (identifier_split) identifier_split )attribute (argument_list (string_':') string_':' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_possible_port) identifier_possible_port (subscript (identifier_current_host_data) identifier_current_host_data (unary_operator (integer_1) integer_1 )unary_operator )subscript )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_possible_port) identifier_possible_port (call (identifier_float) identifier_float (argument_list (identifier_possible_port) identifier_possible_port )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_current_host) identifier_current_host (subscript (identifier_current_host_data) identifier_current_host_data (integer_0) integer_0 )subscript )assignment )expression_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (expression_statement (assignment (identifier_current_host) identifier_current_host (call (attribute (string_':') string_':' (identifier_join) identifier_join )attribute (argument_list (identifier_current_host_data) identifier_current_host_data )argument_list )call )assignment )expression_statement )block )except_clause )try_statement )block )if_statement (return_statement (identifier_current_host) identifier_current_host )return_statement )block )function_definition )module
Returns the current host. :param request_data: The request as a dict :type: dict :return: The current host :rtype: string
(module (function_definition (function_name_schedCoro) function_name_schedCoro (parameters (identifier_self) identifier_self (identifier_coro) identifier_coro )parameters (block (import_statement (aliased_import (dotted_name (identifier_synapse) identifier_synapse (identifier_lib) identifier_lib (identifier_provenance) identifier_provenance )dotted_name (identifier_s_provenance) identifier_s_provenance )aliased_import )import_statement (if_statement (identifier___debug__) identifier___debug__ (block (assert_statement (call (attribute (identifier_s_coro) identifier_s_coro (identifier_iscoro) identifier_iscoro )attribute (argument_list (identifier_coro) identifier_coro )argument_list )call )assert_statement (import_statement (aliased_import (dotted_name (identifier_synapse) identifier_synapse (identifier_lib) identifier_lib (identifier_threads) identifier_threads )dotted_name (identifier_s_threads) identifier_s_threads )aliased_import )import_statement (assert_statement (comparison_operator (call (attribute (identifier_s_threads) identifier_s_threads (identifier_iden) identifier_iden )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_tid) identifier_tid )attribute )comparison_operator )assert_statement )block )if_statement (expression_statement (assignment (identifier_task) identifier_task (call (attribute (attribute (identifier_self) identifier_self (identifier_loop) identifier_loop )attribute (identifier_create_task) identifier_create_task )attribute (argument_list (identifier_coro) identifier_coro )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_asyncio) identifier_asyncio (identifier_current_task) identifier_current_task )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_s_provenance) identifier_s_provenance (identifier_dupstack) identifier_dupstack )attribute (argument_list (identifier_task) identifier_task )argument_list )call )expression_statement )block )if_statement (function_definition (function_name_taskDone) function_name_taskDone (parameters (identifier_task) identifier_task )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__active_tasks) identifier__active_tasks )attribute (identifier_remove) identifier_remove )attribute (argument_list (identifier_task) identifier_task )argument_list )call )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_task) identifier_task (identifier_result) identifier_result )attribute (argument_list )argument_list )call )expression_statement )block (except_clause (attribute (identifier_asyncio) identifier_asyncio (identifier_CancelledError) identifier_CancelledError )attribute (block (pass_statement )pass_statement )block )except_clause (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_exception) identifier_exception )attribute (argument_list (string_'Task scheduled through Base.schedCoro raised exception') string_'Task scheduled through Base.schedCoro raised exception' )argument_list )call )expression_statement )block )except_clause )try_statement )block )function_definition (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__active_tasks) identifier__active_tasks )attribute (identifier_add) identifier_add )attribute (argument_list (identifier_task) identifier_task )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_task) identifier_task (identifier_add_done_callback) identifier_add_done_callback )attribute (argument_list (identifier_taskDone) identifier_taskDone )argument_list )call )expression_statement (return_statement (identifier_task) identifier_task )return_statement )block )function_definition )module
Schedules a free-running coroutine to run on this base's event loop. Kills the coroutine if Base is fini'd. It does not pend on coroutine completion. Precondition: This function is *not* threadsafe and must be run on the Base's event loop Returns: asyncio.Task: An asyncio.Task object.
(module (function_definition (function_name_get_statistics_24h) function_name_get_statistics_24h (parameters (identifier_self) identifier_self (identifier_endtime) identifier_endtime )parameters (block (expression_statement (assignment (identifier_js) identifier_js (call (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (argument_list (dictionary (pair (string_'attrs') string_'attrs' (list (string_"bytes") string_"bytes" (string_"num_sta") string_"num_sta" (string_"time") string_"time" )list )pair (pair (string_'start') string_'start' (binary_operator (call (identifier_int) identifier_int (argument_list (binary_operator (identifier_endtime) identifier_endtime (integer_86400) integer_86400 )binary_operator )argument_list )call (integer_1000) integer_1000 )binary_operator )pair (pair (string_'end') string_'end' (binary_operator (call (identifier_int) identifier_int (argument_list (binary_operator (identifier_endtime) identifier_endtime (integer_3600) integer_3600 )binary_operator )argument_list )call (integer_1000) integer_1000 )binary_operator )pair )dictionary )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_params) identifier_params (call (attribute (identifier_urllib) identifier_urllib (identifier_urlencode) identifier_urlencode )attribute (argument_list (dictionary (pair (string_'json') string_'json' (identifier_js) identifier_js )pair )dictionary )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__read) identifier__read )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_api_url) identifier_api_url )attribute (string_'stat/report/hourly.system') string_'stat/report/hourly.system' )binary_operator (identifier_params) identifier_params )argument_list )call )return_statement )block )function_definition )module
Return statistical data last 24h from time
(module (function_definition (function_name_check_jobs) function_name_check_jobs (parameters (identifier_jobs) identifier_jobs )parameters (block (if_statement (comparison_operator (identifier_jobs) identifier_jobs (integer_0) integer_0 )comparison_operator (block (raise_statement (call (attribute (identifier_click) identifier_click (identifier_UsageError) identifier_UsageError )attribute (argument_list (string_"Jobs must be >= 1 or == -1") string_"Jobs must be >= 1 or == -1" )argument_list )call )raise_statement )block (elif_clause (comparison_operator (identifier_jobs) identifier_jobs (integer_0) integer_0 )comparison_operator (block (import_statement (dotted_name (identifier_multiprocessing) identifier_multiprocessing )dotted_name )import_statement (expression_statement (assignment (identifier_jobs) identifier_jobs (call (attribute (identifier_multiprocessing) identifier_multiprocessing (identifier_cpu_count) identifier_cpu_count )attribute (argument_list )argument_list )call )assignment )expression_statement )block )elif_clause )if_statement (return_statement (identifier_jobs) identifier_jobs )return_statement )block )function_definition )module
Validate number of jobs.
(module (function_definition (function_name_when_matches) function_name_when_matches (parameters (identifier_self) identifier_self (identifier_path) identifier_path (identifier_good_value) identifier_good_value (default_parameter (identifier_bad_values) identifier_bad_values (None) None )default_parameter (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter (default_parameter (identifier_event_timeout) identifier_event_timeout (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_future) identifier_future (call (attribute (identifier_self) identifier_self (identifier_when_matches_async) identifier_when_matches_async )attribute (argument_list (identifier_path) identifier_path (identifier_good_value) identifier_good_value (identifier_bad_values) identifier_bad_values )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_wait_all_futures) identifier_wait_all_futures )attribute (argument_list (identifier_future) identifier_future (keyword_argument (identifier_timeout) identifier_timeout (identifier_timeout) identifier_timeout )keyword_argument (keyword_argument (identifier_event_timeout) identifier_event_timeout (identifier_event_timeout) identifier_event_timeout )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Resolve when an path value equals value Args: path (list): The path to wait to good_value (object): the value to wait for bad_values (list): values to raise an error on timeout (float): time in seconds to wait for responses, wait forever if None event_timeout: maximum time in seconds to wait between each response event, wait forever if None
(module (function_definition (function_name_fit) function_name_fit (parameters (identifier_self) identifier_self (identifier_data) identifier_data (default_parameter (identifier_parent_node) identifier_parent_node (None) None )default_parameter (default_parameter (identifier_estimator) identifier_estimator (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_parent_node) identifier_parent_node )not_operator (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier_parent_node) identifier_parent_node )attribute )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_"parent node must be specified for the model") string_"parent node must be specified for the model" )argument_list )call )raise_statement )block (else_clause (block (expression_statement (assignment (identifier_parent_node) identifier_parent_node (attribute (identifier_self) identifier_self (identifier_parent_node) identifier_parent_node )attribute )assignment )expression_statement )block )else_clause )if_statement )block )if_statement (if_statement (comparison_operator (identifier_parent_node) identifier_parent_node (attribute (identifier_data) identifier_data (identifier_columns) identifier_columns )attribute )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"parent node: {node} is not present in the given data") string_"parent node: {node} is not present in the given data" (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_node) identifier_node (identifier_parent_node) identifier_parent_node )keyword_argument )argument_list )call )argument_list )call )raise_statement )block )if_statement (for_statement (identifier_child_node) identifier_child_node (attribute (identifier_data) identifier_data (identifier_columns) identifier_columns )attribute (block (if_statement (comparison_operator (identifier_child_node) identifier_child_node (identifier_parent_node) identifier_parent_node )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_edge) identifier_add_edge )attribute (argument_list (identifier_parent_node) identifier_parent_node (identifier_child_node) identifier_child_node )argument_list )call )expression_statement )block )if_statement )block )for_statement (expression_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_NaiveBayes) identifier_NaiveBayes (identifier_self) identifier_self )argument_list )call (identifier_fit) identifier_fit )attribute (argument_list (identifier_data) identifier_data (identifier_estimator) identifier_estimator )argument_list )call )expression_statement )block )function_definition )module
Computes the CPD for each node from a given data in the form of a pandas dataframe. If a variable from the data is not present in the model, it adds that node into the model. Parameters ---------- data : pandas DataFrame object A DataFrame object with column names same as the variable names of network parent_node: any hashable python object (optional) Parent node of the model, if not specified it looks for a previously specified parent node. estimator: Estimator class Any pgmpy estimator. If nothing is specified, the default ``MaximumLikelihoodEstimator`` would be used. Examples -------- >>> import numpy as np >>> import pandas as pd >>> from pgmpy.models import NaiveBayes >>> model = NaiveBayes() >>> values = pd.DataFrame(np.random.randint(low=0, high=2, size=(1000, 5)), ... columns=['A', 'B', 'C', 'D', 'E']) >>> model.fit(values, 'A') >>> model.get_cpds() [<TabularCPD representing P(D:2 | A:2) at 0x4b72870>, <TabularCPD representing P(E:2 | A:2) at 0x4bb2150>, <TabularCPD representing P(A:2) at 0x4bb23d0>, <TabularCPD representing P(B:2 | A:2) at 0x4bb24b0>, <TabularCPD representing P(C:2 | A:2) at 0x4bb2750>] >>> model.edges() [('A', 'D'), ('A', 'E'), ('A', 'B'), ('A', 'C')]
(module (function_definition (function_name_create_index) function_name_create_index (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_es) identifier_es (call (attribute (identifier_self) identifier_self (identifier__init_connection) identifier__init_connection )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_es) identifier_es (identifier_indices) identifier_indices )attribute (identifier_exists) identifier_exists )attribute (argument_list (keyword_argument (identifier_index) identifier_index (attribute (identifier_self) identifier_self (identifier_index) identifier_index )attribute )keyword_argument )argument_list )call )not_operator (block (expression_statement (call (attribute (attribute (identifier_es) identifier_es (identifier_indices) identifier_indices )attribute (identifier_create) identifier_create )attribute (argument_list (keyword_argument (identifier_index) identifier_index (attribute (identifier_self) identifier_self (identifier_index) identifier_index )attribute )keyword_argument (keyword_argument (identifier_body) identifier_body (attribute (identifier_self) identifier_self (identifier_settings) identifier_settings )attribute )keyword_argument )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Override to provide code for creating the target index. By default it will be created without any special settings or mappings.
(module (function_definition (function_name__from_dict) function_name__from_dict (parameters (identifier_cls) identifier_cls (identifier__dict) identifier__dict )parameters (block (expression_statement (assignment (identifier_args) identifier_args (dictionary )dictionary )assignment )expression_statement (if_statement (comparison_operator (string_'environment_id') string_'environment_id' (identifier__dict) identifier__dict )comparison_operator (block (expression_statement (assignment (subscript (identifier_args) identifier_args (string_'environment_id') string_'environment_id' )subscript (call (attribute (identifier__dict) identifier__dict (identifier_get) identifier_get )attribute (argument_list (string_'environment_id') string_'environment_id' )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (string_'collection_id') string_'collection_id' (identifier__dict) identifier__dict )comparison_operator (block (expression_statement (assignment (subscript (identifier_args) identifier_args (string_'collection_id') string_'collection_id' )subscript (call (attribute (identifier__dict) identifier__dict (identifier_get) identifier_get )attribute (argument_list (string_'collection_id') string_'collection_id' )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (string_'queries') string_'queries' (identifier__dict) identifier__dict )comparison_operator (block (expression_statement (assignment (subscript (identifier_args) identifier_args (string_'queries') string_'queries' )subscript (list_comprehension (call (attribute (identifier_TrainingQuery) identifier_TrainingQuery (identifier__from_dict) identifier__from_dict )attribute (argument_list (identifier_x) identifier_x )argument_list )call (for_in_clause (identifier_x) identifier_x (parenthesized_expression (call (attribute (identifier__dict) identifier__dict (identifier_get) identifier_get )attribute (argument_list (string_'queries') string_'queries' )argument_list )call )parenthesized_expression )for_in_clause )list_comprehension )assignment )expression_statement )block )if_statement (return_statement (call (identifier_cls) identifier_cls (argument_list (dictionary_splat (identifier_args) identifier_args )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Initialize a TrainingDataSet object from a json dictionary.
(module (function_definition (function_name_addLabel) function_name_addLabel (parameters (identifier_self) identifier_self (identifier_aminoAcidLabels) identifier_aminoAcidLabels (default_parameter (identifier_excludingModifications) identifier_excludingModifications (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_excludingModifications) identifier_excludingModifications (None) None )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_excludingModifictions) identifier_excludingModifictions )attribute (True) True )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_labelEntry) identifier_labelEntry (dictionary (pair (string_'aminoAcidLabels') string_'aminoAcidLabels' (identifier_aminoAcidLabels) identifier_aminoAcidLabels )pair (pair (string_'excludingModifications') string_'excludingModifications' (identifier_excludingModifications) identifier_excludingModifications )pair )dictionary )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_labels) identifier_labels )attribute (attribute (identifier_self) identifier_self (identifier__labelCounter) identifier__labelCounter )attribute )subscript (identifier_labelEntry) identifier_labelEntry )assignment )expression_statement (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier__labelCounter) identifier__labelCounter )attribute (integer_1) integer_1 )augmented_assignment )expression_statement )block )function_definition )module
Adds a new labelstate. :param aminoAcidsLabels: Describes which amino acids can bear which labels. Possible keys are the amino acids in one letter code and 'nTerm', 'cTerm'. Possible values are the modifications ids from :attr:`maspy.constants.aaModMass` as strings or a list of strings. An example for one expected label at the n-terminus and two expected labels at each Lysine: ``{'nTerm': 'u:188', 'K': ['u:188', 'u:188']}`` :param excludingModifications: optional, A Dectionary that describes which modifications can prevent the addition of labels. Keys and values have to be the modifications ids from :attr:`maspy.constants.aaModMass`. The key specifies the modification that prevents the label modification specified by the value. For example for each modification 'u:1' that is present at an amino acid or terminus of a peptide the number of expected labels at this position is reduced by one: ``{'u:1':'u:188'}``
(module (function_definition (function_name_detach_all_classes) function_name_detach_all_classes (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_classes) identifier_classes (call (identifier_list) identifier_list (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier__observers) identifier__observers )attribute (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (for_statement (identifier_cls) identifier_cls (identifier_classes) identifier_classes (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_detach_class) identifier_detach_class )attribute (argument_list (identifier_cls) identifier_cls )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Detach from all tracked classes.
(module (function_definition (function_name_classproperty) function_name_classproperty (parameters (identifier_func) identifier_func )parameters (block (expression_statement (assignment (identifier_doc) identifier_doc (attribute (identifier_func) identifier_func (identifier___doc__) identifier___doc__ )attribute )assignment )expression_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_func) identifier_func (tuple (identifier_classmethod) identifier_classmethod (identifier_staticmethod) identifier_staticmethod )tuple )argument_list )call )not_operator (block (expression_statement (assignment (identifier_func) identifier_func (call (identifier_classmethod) identifier_classmethod (argument_list (identifier_func) identifier_func )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (call (identifier_ClassPropertyDescriptor) identifier_ClassPropertyDescriptor (argument_list (identifier_func) identifier_func (identifier_doc) identifier_doc )argument_list )call )return_statement )block )function_definition )module
Use as a decorator on a method definition to make it a class-level attribute. This decorator can be applied to a method, a classmethod, or a staticmethod. This decorator will bind the first argument to the class object. Usage: >>> class Foo(object): ... @classproperty ... def name(cls): ... return cls.__name__ ... >>> Foo.name 'Foo' Setting or deleting the attribute of this name will overwrite this property. The docstring of the classproperty `x` for a class `C` can be obtained by `C.__dict__['x'].__doc__`.
(module (function_definition (function_name_sort_cards) function_name_sort_cards (parameters (identifier_cards) identifier_cards (default_parameter (identifier_ranks) identifier_ranks (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_ranks) identifier_ranks (boolean_operator (identifier_ranks) identifier_ranks (identifier_DEFAULT_RANKS) identifier_DEFAULT_RANKS )boolean_operator )assignment )expression_statement (if_statement (call (attribute (identifier_ranks) identifier_ranks (identifier_get) identifier_get )attribute (argument_list (string_"suits") string_"suits" )argument_list )call (block (expression_statement (assignment (identifier_cards) identifier_cards (call (identifier_sorted) identifier_sorted (argument_list (identifier_cards) identifier_cards (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (conditional_expression (subscript (subscript (identifier_ranks) identifier_ranks (string_"suits") string_"suits" )subscript (attribute (identifier_x) identifier_x (identifier_suit) identifier_suit )attribute )subscript (comparison_operator (attribute (identifier_x) identifier_x (identifier_suit) identifier_suit )attribute (None) None )comparison_operator (integer_0) integer_0 )conditional_expression )lambda )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (call (attribute (identifier_ranks) identifier_ranks (identifier_get) identifier_get )attribute (argument_list (string_"values") string_"values" )argument_list )call (block (expression_statement (assignment (identifier_cards) identifier_cards (call (identifier_sorted) identifier_sorted (argument_list (identifier_cards) identifier_cards (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (subscript (subscript (identifier_ranks) identifier_ranks (string_"values") string_"values" )subscript (attribute (identifier_x) identifier_x (identifier_value) identifier_value )attribute )subscript )lambda )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_cards) identifier_cards )return_statement )block )function_definition )module
Sorts a given list of cards, either by poker ranks, or big two ranks. :arg cards: The cards to sort. :arg dict ranks: The rank dict to reference for sorting. If ``None``, it will default to ``DEFAULT_RANKS``. :returns: The sorted cards.
(module (function_definition (function_name_from_sequence) function_name_from_sequence (parameters (identifier_chain) identifier_chain (identifier_list_of_residues) identifier_list_of_residues (default_parameter (identifier_sequence_type) identifier_sequence_type (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_s) identifier_s (call (identifier_Sequence) identifier_Sequence (argument_list (identifier_sequence_type) identifier_sequence_type )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_count) identifier_count (integer_1) integer_1 )assignment )expression_statement (for_statement (identifier_ResidueAA) identifier_ResidueAA (identifier_list_of_residues) identifier_list_of_residues (block (expression_statement (call (attribute (identifier_s) identifier_s (identifier_add) identifier_add )attribute (argument_list (call (identifier_Residue) identifier_Residue (argument_list (identifier_chain) identifier_chain (identifier_count) identifier_count (identifier_ResidueAA) identifier_ResidueAA (identifier_sequence_type) identifier_sequence_type )argument_list )call )argument_list )call )expression_statement (expression_statement (augmented_assignment (identifier_count) identifier_count (integer_1) integer_1 )augmented_assignment )expression_statement )block )for_statement (return_statement (identifier_s) identifier_s )return_statement )block )function_definition )module
Takes in a chain identifier and protein sequence and returns a Sequence object of Residues, indexed from 1.
(module (function_definition (function_name_rule_variable) function_name_rule_variable (parameters (identifier_field_type) identifier_field_type (default_parameter (identifier_label) identifier_label (None) None )default_parameter (default_parameter (identifier_options) identifier_options (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_options) identifier_options (boolean_operator (identifier_options) identifier_options (list )list )boolean_operator )assignment )expression_statement (function_definition (function_name_wrapper) function_name_wrapper (parameters (identifier_func) identifier_func )parameters (block (if_statement (not_operator (parenthesized_expression (boolean_operator (comparison_operator (call (identifier_type) identifier_type (argument_list (identifier_field_type) identifier_field_type )argument_list )call (identifier_type) identifier_type )comparison_operator (call (identifier_issubclass) identifier_issubclass (argument_list (identifier_field_type) identifier_field_type (identifier_BaseType) identifier_BaseType )argument_list )call )boolean_operator )parenthesized_expression )not_operator (block (raise_statement (call (identifier_AssertionError) identifier_AssertionError (argument_list (call (attribute (concatenated_string (string_"{0} is not instance of BaseType in") string_"{0} is not instance of BaseType in" (string_" rule_variable field_type") string_" rule_variable field_type" )concatenated_string (identifier_format) identifier_format )attribute (argument_list (identifier_field_type) identifier_field_type )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (attribute (identifier_func) identifier_func (identifier_field_type) identifier_field_type )attribute (identifier_field_type) identifier_field_type )assignment )expression_statement (expression_statement (assignment (attribute (identifier_func) identifier_func (identifier_is_rule_variable) identifier_is_rule_variable )attribute (True) True )assignment )expression_statement (expression_statement (assignment (attribute (identifier_func) identifier_func (identifier_label) identifier_label )attribute (boolean_operator (identifier_label) identifier_label (line_continuation_\) line_continuation_\ (call (identifier_fn_name_to_pretty_label) identifier_fn_name_to_pretty_label (argument_list (attribute (identifier_func) identifier_func (identifier___name__) identifier___name__ )attribute )argument_list )call )boolean_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_func) identifier_func (identifier_options) identifier_options )attribute (identifier_options) identifier_options )assignment )expression_statement (return_statement (identifier_func) identifier_func )return_statement )block )function_definition (return_statement (identifier_wrapper) identifier_wrapper )return_statement )block )function_definition )module
Decorator to make a function into a rule variable
(module (function_definition (function_name_start_in_keepedalive_processes) function_name_start_in_keepedalive_processes (parameters (identifier_obj) identifier_obj (identifier_nb_process) identifier_nb_process )parameters (block (expression_statement (assignment (identifier_processes) identifier_processes (list )list )assignment )expression_statement (expression_statement (assignment (identifier_readers_pipes) identifier_readers_pipes (list )list )assignment )expression_statement (expression_statement (assignment (identifier_writers_pipes) identifier_writers_pipes (list )list )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (identifier_nb_process) identifier_nb_process )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_local_read_pipe) identifier_local_read_pipe (identifier_local_write_pipe) identifier_local_write_pipe )pattern_list (call (identifier_Pipe) identifier_Pipe (argument_list (keyword_argument (identifier_duplex) identifier_duplex (False) False )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_process_read_pipe) identifier_process_read_pipe (identifier_process_write_pipe) identifier_process_write_pipe )pattern_list (call (identifier_Pipe) identifier_Pipe (argument_list (keyword_argument (identifier_duplex) identifier_duplex (False) False )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_readers_pipes) identifier_readers_pipes (identifier_append) identifier_append )attribute (argument_list (identifier_local_read_pipe) identifier_local_read_pipe )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_writers_pipes) identifier_writers_pipes (identifier_append) identifier_append )attribute (argument_list (identifier_process_write_pipe) identifier_process_write_pipe )argument_list )call )expression_statement (expression_statement (assignment (identifier_p) identifier_p (call (identifier_Process) identifier_Process (argument_list (keyword_argument (identifier_target) identifier_target (identifier_run_keepedalive_process) identifier_run_keepedalive_process )keyword_argument (keyword_argument (identifier_args) identifier_args (tuple (identifier_local_write_pipe) identifier_local_write_pipe (identifier_process_read_pipe) identifier_process_read_pipe (identifier_obj) identifier_obj )tuple )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_p) identifier_p (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_processes) identifier_processes (identifier_append) identifier_append )attribute (argument_list (identifier_p) identifier_p )argument_list )call )expression_statement )block )for_statement (for_statement (identifier_job) identifier_job (call (identifier_range) identifier_range (argument_list (integer_3) integer_3 )argument_list )call (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'send new job to processes:') string_'send new job to processes:' )argument_list )call )expression_statement (for_statement (identifier_process_number) identifier_process_number (call (identifier_range) identifier_range (argument_list (identifier_nb_process) identifier_nb_process )argument_list )call (block (expression_statement (call (attribute (subscript (identifier_writers_pipes) identifier_writers_pipes (identifier_process_number) identifier_process_number )subscript (identifier_send) identifier_send )attribute (argument_list (identifier_obj) identifier_obj )argument_list )call )expression_statement (expression_statement (assignment (identifier_reader_useds) identifier_reader_useds (list )list )assignment )expression_statement )block )for_statement (while_statement (identifier_readers_pipes) identifier_readers_pipes (block (for_statement (identifier_r) identifier_r (call (identifier_wait) identifier_wait (argument_list (identifier_readers_pipes) identifier_readers_pipes )argument_list )call (block (try_statement (block (expression_statement (call (attribute (identifier_r) identifier_r (identifier_recv) identifier_recv )attribute (argument_list )argument_list )call )expression_statement )block (except_clause (identifier_EOFError) identifier_EOFError (block (pass_statement )pass_statement )block )except_clause (finally_clause (block (expression_statement (call (attribute (identifier_reader_useds) identifier_reader_useds (identifier_append) identifier_append )attribute (argument_list (identifier_r) identifier_r )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_readers_pipes) identifier_readers_pipes (identifier_remove) identifier_remove )attribute (argument_list (identifier_r) identifier_r )argument_list )call )expression_statement )block )finally_clause )try_statement )block )for_statement )block )while_statement (expression_statement (assignment (identifier_readers_pipes) identifier_readers_pipes (identifier_reader_useds) identifier_reader_useds )assignment )expression_statement )block )for_statement (for_statement (identifier_writer_pipe) identifier_writer_pipe (identifier_writers_pipes) identifier_writers_pipes (block (expression_statement (call (attribute (identifier_writer_pipe) identifier_writer_pipe (identifier_send) identifier_send )attribute (argument_list (string_'stop') string_'stop' )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Start nb_process and keep them alive. Send job to them multiple times, then close thems.
(module (function_definition (function_name_ring_position) function_name_ring_position (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_type) identifier_type )attribute (attribute (identifier_EventType) identifier_EventType (identifier_TABLET_PAD_RING) identifier_TABLET_PAD_RING )attribute )comparison_operator (block (raise_statement (call (identifier_AttributeError) identifier_AttributeError (argument_list (call (attribute (identifier__wrong_prop) identifier__wrong_prop (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_type) identifier_type )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__libinput) identifier__libinput )attribute (identifier_libinput_event_tablet_pad_get_ring_position) identifier_libinput_event_tablet_pad_get_ring_position )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__handle) identifier__handle )attribute )argument_list )call )return_statement )block )function_definition )module
The current position of the ring, in degrees counterclockwise from the northern-most point of the ring in the tablet's current logical orientation. If the source is :attr:`~libinput.constant.TabletPadRingAxisSource.FINGER`, libinput sends a terminating event with a ring value of -1 when the finger is lifted from the ring. A caller may use this information to e.g. determine if kinetic scrolling should be triggered. For events not of type :attr:`~libinput.constant.EventType.TABLET_PAD_RING`, this property raises :exc:`AttributeError`. Returns: float: The current value of the the axis. -1 if the finger was lifted. Raises: AttributeError
(module (function_definition (function_name_init_services) function_name_init_services (parameters (identifier_service_definitions) identifier_service_definitions (identifier_service_context) identifier_service_context (identifier_state_db) identifier_state_db (default_parameter (identifier_client_authn_factory) identifier_client_authn_factory (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_service) identifier_service (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_service_name) identifier_service_name (identifier_service_configuration) identifier_service_configuration )pattern_list (call (attribute (identifier_service_definitions) identifier_service_definitions (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (try_statement (block (expression_statement (assignment (identifier_kwargs) identifier_kwargs (subscript (identifier_service_configuration) identifier_service_configuration (string_'kwargs') string_'kwargs' )subscript )assignment )expression_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (expression_statement (assignment (identifier_kwargs) identifier_kwargs (dictionary )dictionary )assignment )expression_statement )block )except_clause )try_statement (expression_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'service_context') string_'service_context' (identifier_service_context) identifier_service_context )pair (pair (string_'state_db') string_'state_db' (identifier_state_db) identifier_state_db )pair (pair (string_'client_authn_factory') string_'client_authn_factory' (identifier_client_authn_factory) identifier_client_authn_factory )pair )dictionary )argument_list )call )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_service_configuration) identifier_service_configuration (string_'class') string_'class' )subscript (identifier_str) identifier_str )argument_list )call (block (expression_statement (assignment (identifier__srv) identifier__srv (call (call (attribute (identifier_util) identifier_util (identifier_importer) identifier_importer )attribute (argument_list (subscript (identifier_service_configuration) identifier_service_configuration (string_'class') string_'class' )subscript )argument_list )call (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier__srv) identifier__srv (call (subscript (identifier_service_configuration) identifier_service_configuration (string_'class') string_'class' )subscript (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (try_statement (block (expression_statement (assignment (subscript (identifier_service) identifier_service (attribute (identifier__srv) identifier__srv (identifier_service_name) identifier_service_name )attribute )subscript (identifier__srv) identifier__srv )assignment )expression_statement )block (except_clause (identifier_AttributeError) identifier_AttributeError (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"Could not load '{}'") string_"Could not load '{}'" (identifier_format) identifier_format )attribute (argument_list (identifier_service_name) identifier_service_name )argument_list )call )argument_list )call )raise_statement )block )except_clause )try_statement )block )for_statement (return_statement (identifier_service) identifier_service )return_statement )block )function_definition )module
Initiates a set of services :param service_definitions: A dictionary cotaining service definitions :param service_context: A reference to the service context, this is the same for all service instances. :param state_db: A reference to the state database. Shared by all the services. :param client_authn_factory: A list of methods the services can use to authenticate the client to a service. :return: A dictionary, with service name as key and the service instance as value.
(module (function_definition (function_name__capabilities_dict) function_name__capabilities_dict (parameters (identifier_envs) identifier_envs (identifier_tags) identifier_tags )parameters (block (expression_statement (assignment (identifier_capabilities) identifier_capabilities (dictionary (pair (string_'browserName') string_'browserName' (subscript (identifier_envs) identifier_envs (string_'SELENIUM_BROWSER') string_'SELENIUM_BROWSER' )subscript )pair (pair (string_'acceptInsecureCerts') string_'acceptInsecureCerts' (call (identifier_bool) identifier_bool (argument_list (call (attribute (identifier_envs) identifier_envs (identifier_get) identifier_get )attribute (argument_list (string_'SELENIUM_INSECURE_CERTS') string_'SELENIUM_INSECURE_CERTS' (False) False )argument_list )call )argument_list )call )pair (pair (string_'video-upload-on-pass') string_'video-upload-on-pass' (False) False )pair (pair (string_'sauce-advisor') string_'sauce-advisor' (False) False )pair (pair (string_'capture-html') string_'capture-html' (True) True )pair (pair (string_'record-screenshots') string_'record-screenshots' (True) True )pair (pair (string_'max-duration') string_'max-duration' (integer_600) integer_600 )pair (pair (string_'public') string_'public' (string_'public restricted') string_'public restricted' )pair (pair (string_'tags') string_'tags' (identifier_tags) identifier_tags )pair )dictionary )assignment )expression_statement (if_statement (call (identifier__use_remote_browser) identifier__use_remote_browser (argument_list (identifier_SAUCE_ENV_VARS) identifier_SAUCE_ENV_VARS )argument_list )call (block (expression_statement (assignment (identifier_sauce_capabilities) identifier_sauce_capabilities (dictionary (pair (string_'platform') string_'platform' (subscript (identifier_envs) identifier_envs (string_'SELENIUM_PLATFORM') string_'SELENIUM_PLATFORM' )subscript )pair (pair (string_'version') string_'version' (subscript (identifier_envs) identifier_envs (string_'SELENIUM_VERSION') string_'SELENIUM_VERSION' )subscript )pair (pair (string_'username') string_'username' (subscript (identifier_envs) identifier_envs (string_'SAUCE_USER_NAME') string_'SAUCE_USER_NAME' )subscript )pair (pair (string_'accessKey') string_'accessKey' (subscript (identifier_envs) identifier_envs (string_'SAUCE_API_KEY') string_'SAUCE_API_KEY' )subscript )pair )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_capabilities) identifier_capabilities (identifier_update) identifier_update )attribute (argument_list (identifier_sauce_capabilities) identifier_sauce_capabilities )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (string_'JOB_NAME') string_'JOB_NAME' (identifier_envs) identifier_envs )comparison_operator (block (expression_statement (assignment (identifier_jenkins_vars) identifier_jenkins_vars (dictionary (pair (string_'build') string_'build' (subscript (identifier_envs) identifier_envs (string_'BUILD_NUMBER') string_'BUILD_NUMBER' )subscript )pair (pair (string_'name') string_'name' (subscript (identifier_envs) identifier_envs (string_'JOB_NAME') string_'JOB_NAME' )subscript )pair )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_capabilities) identifier_capabilities (identifier_update) identifier_update )attribute (argument_list (identifier_jenkins_vars) identifier_jenkins_vars )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_capabilities) identifier_capabilities )return_statement )block )function_definition )module
Convert the dictionary of environment variables to a dictionary of desired capabilities to send to the Remote WebDriver. `tags` is a list of string tags to apply to the SauceLabs job.
(module (function_definition (function_name_pch_emitter) function_name_pch_emitter (parameters (identifier_target) identifier_target (identifier_source) identifier_source (identifier_env) identifier_env )parameters (block (expression_statement (call (identifier_validate_vars) identifier_validate_vars (argument_list (identifier_env) identifier_env )argument_list )call )expression_statement (expression_statement (assignment (identifier_pch) identifier_pch (None) None )assignment )expression_statement (expression_statement (assignment (identifier_obj) identifier_obj (None) None )assignment )expression_statement (for_statement (identifier_t) identifier_t (identifier_target) identifier_target (block (if_statement (comparison_operator (subscript (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Util) identifier_Util )attribute (identifier_splitext) identifier_splitext )attribute (argument_list (call (identifier_str) identifier_str (argument_list (identifier_t) identifier_t )argument_list )call )argument_list )call (integer_1) integer_1 )subscript (string_'.pch') string_'.pch' )comparison_operator (block (expression_statement (assignment (identifier_pch) identifier_pch (identifier_t) identifier_t )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (subscript (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Util) identifier_Util )attribute (identifier_splitext) identifier_splitext )attribute (argument_list (call (identifier_str) identifier_str (argument_list (identifier_t) identifier_t )argument_list )call )argument_list )call (integer_1) integer_1 )subscript (string_'.obj') string_'.obj' )comparison_operator (block (expression_statement (assignment (identifier_obj) identifier_obj (identifier_t) identifier_t )assignment )expression_statement )block )if_statement )block )for_statement (if_statement (not_operator (identifier_obj) identifier_obj )not_operator (block (expression_statement (assignment (identifier_obj) identifier_obj (binary_operator (subscript (call (attribute (attribute (identifier_SCons) identifier_SCons (identifier_Util) identifier_Util )attribute (identifier_splitext) identifier_splitext )attribute (argument_list (call (identifier_str) identifier_str (argument_list (identifier_pch) identifier_pch )argument_list )call )argument_list )call (integer_0) integer_0 )subscript (string_'.obj') string_'.obj' )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_target) identifier_target (list (identifier_pch) identifier_pch (identifier_obj) identifier_obj )list )assignment )expression_statement (return_statement (tuple (identifier_target) identifier_target (identifier_source) identifier_source )tuple )return_statement )block )function_definition )module
Adds the object file target.
(module (function_definition (function_name_get_configdir) function_name_get_configdir (parameters (identifier_name) identifier_name )parameters (block (expression_statement (assignment (identifier_configdir) identifier_configdir (call (attribute (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (identifier_get) identifier_get )attribute (argument_list (binary_operator (string_'%sCONFIGDIR') string_'%sCONFIGDIR' (call (attribute (identifier_name) identifier_name (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )binary_operator )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_configdir) identifier_configdir (None) None )comparison_operator (block (return_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (identifier_configdir) identifier_configdir )argument_list )call )return_statement )block )if_statement (expression_statement (assignment (identifier_p) identifier_p (None) None )assignment )expression_statement (expression_statement (assignment (identifier_h) identifier_h (call (identifier__get_home) identifier__get_home (argument_list )argument_list )call )assignment )expression_statement (if_statement (parenthesized_expression (boolean_operator (parenthesized_expression (boolean_operator (call (attribute (attribute (identifier_sys) identifier_sys (identifier_platform) identifier_platform )attribute (identifier_startswith) identifier_startswith )attribute (argument_list (string_'linux') string_'linux' )argument_list )call (call (attribute (attribute (identifier_sys) identifier_sys (identifier_platform) identifier_platform )attribute (identifier_startswith) identifier_startswith )attribute (argument_list (string_'darwin') string_'darwin' )argument_list )call )boolean_operator )parenthesized_expression (comparison_operator (identifier_h) identifier_h (None) None )comparison_operator )boolean_operator )parenthesized_expression (block (expression_statement (assignment (identifier_p) identifier_p (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_h) identifier_h (binary_operator (string_'.config/') string_'.config/' (identifier_name) identifier_name )binary_operator )argument_list )call )assignment )expression_statement )block (elif_clause (comparison_operator (identifier_h) identifier_h (None) None )comparison_operator (block (expression_statement (assignment (identifier_p) identifier_p (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_h) identifier_h (binary_operator (string_'.') string_'.' (identifier_name) identifier_name )binary_operator )argument_list )call )assignment )expression_statement )block )elif_clause )if_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_p) identifier_p )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_os) identifier_os (identifier_makedirs) identifier_makedirs )attribute (argument_list (identifier_p) identifier_p )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_p) identifier_p )return_statement )block )function_definition )module
Return the string representing the configuration directory. The directory is chosen as follows: 1. If the ``name.upper() + CONFIGDIR`` environment variable is supplied, choose that. 2a. On Linux, choose `$HOME/.config`. 2b. On other platforms, choose `$HOME/.matplotlib`. 3. If the chosen directory exists, use that as the configuration directory. 4. A directory: return None. Notes ----- This function is taken from the matplotlib [1] module References ---------- [1]: http://matplotlib.org/api/
(module (function_definition (function_name__load_params) function_name__load_params (parameters (identifier_params) identifier_params (default_parameter (identifier_logger) identifier_logger (identifier_logging) identifier_logging )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_params) identifier_params (identifier_str) identifier_str )argument_list )call (block (expression_statement (assignment (identifier_cur_path) identifier_cur_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_realpath) identifier_realpath )attribute (argument_list (identifier___file__) identifier___file__ )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_param_file_path) identifier_param_file_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_cur_path) identifier_cur_path (identifier_params) identifier_params )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_'Loading params from file %s') string_'Loading params from file %s' (identifier_param_file_path) identifier_param_file_path )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_save_dict) identifier_save_dict (call (identifier_nd_load) identifier_nd_load (argument_list (identifier_param_file_path) identifier_param_file_path )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_arg_params) identifier_arg_params (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_aux_params) identifier_aux_params (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (identifier_save_dict) identifier_save_dict (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (assignment (pattern_list (identifier_tp) identifier_tp (identifier_name) identifier_name )pattern_list (call (attribute (identifier_k) identifier_k (identifier_split) identifier_split )attribute (argument_list (string_':') string_':' (integer_1) integer_1 )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_tp) identifier_tp (string_'arg') string_'arg' )comparison_operator (block (expression_statement (assignment (subscript (identifier_arg_params) identifier_arg_params (identifier_name) identifier_name )subscript (identifier_v) identifier_v )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_tp) identifier_tp (string_'aux') string_'aux' )comparison_operator (block (expression_statement (assignment (subscript (identifier_aux_params) identifier_aux_params (identifier_name) identifier_name )subscript (identifier_v) identifier_v )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (expression_list (identifier_arg_params) identifier_arg_params (identifier_aux_params) identifier_aux_params )expression_list )return_statement )block (elif_clause (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_params) identifier_params (tuple (identifier_tuple) identifier_tuple (identifier_list) identifier_list )tuple )argument_list )call (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_params) identifier_params )argument_list )call (integer_2) integer_2 )comparison_operator )boolean_operator (block (return_statement (expression_list (subscript (identifier_params) identifier_params (integer_0) integer_0 )subscript (subscript (identifier_params) identifier_params (integer_1) integer_1 )subscript )expression_list )return_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (concatenated_string (string_'Unsupported params provided. Must be either a path to the param file or') string_'Unsupported params provided. Must be either a path to the param file or' (string_' a pair of dictionaries representing arg_params and aux_params') string_' a pair of dictionaries representing arg_params and aux_params' )concatenated_string )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Given a str as a path to the .params file or a pair of params, returns two dictionaries representing arg_params and aux_params.
(module (function_definition (function_name_clean) function_name_clean (parameters (identifier_self) identifier_self (default_parameter (identifier_force) identifier_force (False) False )default_parameter )parameters (block (if_statement (boolean_operator (attribute (identifier_self) identifier_self (identifier_is_finalized) identifier_is_finalized )attribute (not_operator (identifier_force) identifier_force )not_operator )boolean_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_warn) identifier_warn )attribute (argument_list (string_"Can't clean; bundle is finalized") string_"Can't clean; bundle is finalized" )argument_list )call )expression_statement (return_statement (False) False )return_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (argument_list (string_'---- Cleaning ----') string_'---- Cleaning ----' )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_state) identifier_state )attribute (attribute (attribute (identifier_self) identifier_self (identifier_STATES) identifier_STATES )attribute (identifier_CLEANING) identifier_CLEANING )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_dstate) identifier_dstate )attribute (attribute (attribute (identifier_self) identifier_self (identifier_STATES) identifier_STATES )attribute (identifier_BUILDING) identifier_BUILDING )attribute )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_commit) identifier_commit )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_sources) identifier_clean_sources )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_tables) identifier_clean_tables )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_partitions) identifier_clean_partitions )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_build) identifier_clean_build )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_files) identifier_clean_files )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_ingested) identifier_clean_ingested )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_build_state) identifier_clean_build_state )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_clean_progress) identifier_clean_progress )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_state) identifier_state )attribute (attribute (attribute (identifier_self) identifier_self (identifier_STATES) identifier_STATES )attribute (identifier_CLEANED) identifier_CLEANED )attribute )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_commit) identifier_commit )attribute (argument_list )argument_list )call )expression_statement (return_statement (True) True )return_statement )block )function_definition )module
Clean generated objects from the dataset, but only if there are File contents to regenerate them
(module (function_definition (function_name_call_mr_transform) function_name_call_mr_transform (parameters (identifier_data) identifier_data (default_parameter (identifier_opt) identifier_opt (string_'') string_'' )default_parameter (default_parameter (identifier_path) identifier_path (string_'./') string_'./' )default_parameter (default_parameter (identifier_remove_files) identifier_remove_files (True) True )default_parameter )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (if_statement (not_operator (identifier_import_astropy) identifier_import_astropy )not_operator (block (raise_statement (call (identifier_ImportError) identifier_ImportError (argument_list (string_'Astropy package not found.') string_'Astropy package not found.' )argument_list )call )raise_statement )block )if_statement (if_statement (boolean_operator (parenthesized_expression (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_data) identifier_data (attribute (identifier_np) identifier_np (identifier_ndarray) identifier_ndarray )attribute )argument_list )call )not_operator )parenthesized_expression (parenthesized_expression (comparison_operator (attribute (identifier_data) identifier_data (identifier_ndim) identifier_ndim )attribute (integer_2) integer_2 )comparison_operator )parenthesized_expression )boolean_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Input data must be a 2D numpy array.') string_'Input data must be a 2D numpy array.' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_executable) identifier_executable (string_'mr_transform') string_'mr_transform' )assignment )expression_statement (expression_statement (call (identifier_is_executable) identifier_is_executable (argument_list (identifier_executable) identifier_executable )argument_list )call )expression_statement (expression_statement (assignment (identifier_unique_string) identifier_unique_string (call (attribute (call (attribute (identifier_datetime) identifier_datetime (identifier_now) identifier_now )attribute (argument_list )argument_list )call (identifier_strftime) identifier_strftime )attribute (argument_list (string_'%Y.%m.%d_%H.%M.%S') string_'%Y.%m.%d_%H.%M.%S' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_file_name) identifier_file_name (binary_operator (binary_operator (identifier_path) identifier_path (string_'mr_temp_') string_'mr_temp_' )binary_operator (identifier_unique_string) identifier_unique_string )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_file_fits) identifier_file_fits (binary_operator (identifier_file_name) identifier_file_name (string_'.fits') string_'.fits' )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_file_mr) identifier_file_mr (binary_operator (identifier_file_name) identifier_file_name (string_'.mr') string_'.mr' )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_fits) identifier_fits (identifier_writeto) identifier_writeto )attribute (argument_list (identifier_file_fits) identifier_file_fits (identifier_data) identifier_data )argument_list )call )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_opt) identifier_opt (identifier_str) identifier_str )argument_list )call (block (expression_statement (assignment (identifier_opt) identifier_opt (call (attribute (identifier_opt) identifier_opt (identifier_split) identifier_split )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (try_statement (block (expression_statement (call (identifier_check_call) identifier_check_call (argument_list (binary_operator (binary_operator (list (identifier_executable) identifier_executable )list (identifier_opt) identifier_opt )binary_operator (list (identifier_file_fits) identifier_file_fits (identifier_file_mr) identifier_file_mr )list )binary_operator )argument_list )call )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (identifier_warn) identifier_warn (argument_list (call (attribute (string_'{} failed to run with the options provided.') string_'{} failed to run with the options provided.' (identifier_format) identifier_format )attribute (argument_list (identifier_executable) identifier_executable )argument_list )call )argument_list )call )expression_statement (expression_statement (call (identifier_remove) identifier_remove (argument_list (identifier_file_fits) identifier_file_fits )argument_list )call )expression_statement )block )except_clause (else_clause (block (expression_statement (assignment (identifier_result) identifier_result (call (attribute (identifier_fits) identifier_fits (identifier_getdata) identifier_getdata )attribute (argument_list (identifier_file_mr) identifier_file_mr )argument_list )call )assignment )expression_statement (if_statement (identifier_remove_files) identifier_remove_files (block (expression_statement (call (identifier_remove) identifier_remove (argument_list (identifier_file_fits) identifier_file_fits )argument_list )call )expression_statement (expression_statement (call (identifier_remove) identifier_remove (argument_list (identifier_file_mr) identifier_file_mr )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_result) identifier_result )return_statement )block )else_clause )try_statement )block )function_definition )module
r"""Call mr_transform This method calls the iSAP module mr_transform Parameters ---------- data : np.ndarray Input data, 2D array opt : list or str, optional Options to be passed to mr_transform path : str, optional Path for output files (default is './') remove_files : bool, optional Option to remove output files (default is 'True') Returns ------- np.ndarray results of mr_transform Raises ------ ValueError If the input data is not a 2D numpy array Examples -------- >>> from modopt.signal.wavelet import * >>> a = np.arange(9).reshape(3, 3).astype(float) >>> call_mr_transform(a) array([[[-1.5 , -1.125 , -0.75 ], [-0.375 , 0. , 0.375 ], [ 0.75 , 1.125 , 1.5 ]], [[-1.5625 , -1.171875 , -0.78125 ], [-0.390625 , 0. , 0.390625 ], [ 0.78125 , 1.171875 , 1.5625 ]], [[-0.5859375 , -0.43945312, -0.29296875], [-0.14648438, 0. , 0.14648438], [ 0.29296875, 0.43945312, 0.5859375 ]], [[ 3.6484375 , 3.73632812, 3.82421875], [ 3.91210938, 4. , 4.08789062], [ 4.17578125, 4.26367188, 4.3515625 ]]], dtype=float32)
(module (function_definition (function_name_walk_recursive) function_name_walk_recursive (parameters (identifier_f) identifier_f (identifier_data) identifier_data )parameters (block (expression_statement (assignment (identifier_results) identifier_results (dictionary )dictionary )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_data) identifier_data (identifier_list) identifier_list )argument_list )call (block (return_statement (list_comprehension (call (identifier_walk_recursive) identifier_walk_recursive (argument_list (identifier_f) identifier_f (identifier_d) identifier_d )argument_list )call (for_in_clause (identifier_d) identifier_d (identifier_data) identifier_data )for_in_clause )list_comprehension )return_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_data) identifier_data (identifier_dict) identifier_dict )argument_list )call (block (expression_statement (assignment (identifier_results) identifier_results (call (attribute (identifier_funcy) identifier_funcy (identifier_walk_keys) identifier_walk_keys )attribute (argument_list (identifier_f) identifier_f (identifier_data) identifier_data )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (identifier_data) identifier_data (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (identifier_dict) identifier_dict )argument_list )call (block (expression_statement (assignment (subscript (identifier_results) identifier_results (call (identifier_f) identifier_f (argument_list (identifier_k) identifier_k )argument_list )call )subscript (call (identifier_walk_recursive) identifier_walk_recursive (argument_list (identifier_f) identifier_f (identifier_v) identifier_v )argument_list )call )assignment )expression_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (identifier_list) identifier_list )argument_list )call (block (expression_statement (assignment (subscript (identifier_results) identifier_results (call (identifier_f) identifier_f (argument_list (identifier_k) identifier_k )argument_list )call )subscript (list_comprehension (call (identifier_walk_recursive) identifier_walk_recursive (argument_list (identifier_f) identifier_f (identifier_d) identifier_d )argument_list )call (for_in_clause (identifier_d) identifier_d (identifier_v) identifier_v )for_in_clause )list_comprehension )assignment )expression_statement )block )elif_clause )if_statement )block )for_statement )block )elif_clause (else_clause (block (return_statement (call (identifier_f) identifier_f (argument_list (identifier_data) identifier_data )argument_list )call )return_statement )block )else_clause )if_statement (return_statement (identifier_results) identifier_results )return_statement )block )function_definition )module
Recursively apply a function to all dicts in a nested dictionary :param f: Function to apply :param data: Dictionary (possibly nested) to recursively apply function to :return:
(module (function_definition (function_name_set_loader) function_name_set_loader (parameters (identifier_self) identifier_self (identifier_loader) identifier_loader (identifier_destructor) identifier_destructor (identifier_state) identifier_state )parameters (block (return_statement (call (attribute (identifier_lib) identifier_lib (identifier_zcertstore_set_loader) identifier_zcertstore_set_loader )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__as_parameter_) identifier__as_parameter_ )attribute (identifier_loader) identifier_loader (identifier_destructor) identifier_destructor (identifier_state) identifier_state )argument_list )call )return_statement )block )function_definition )module
Override the default disk loader with a custom loader fn.
(module (function_definition (function_name__raise_error_if_not_drawing_classifier_input_sframe) function_name__raise_error_if_not_drawing_classifier_input_sframe (parameters (identifier_dataset) identifier_dataset (identifier_feature) identifier_feature (identifier_target) identifier_target )parameters (block (import_from_statement (dotted_name (identifier_turicreate) identifier_turicreate (identifier_toolkits) identifier_toolkits (identifier__internal_utils) identifier__internal_utils )dotted_name (dotted_name (identifier__raise_error_if_not_sframe) identifier__raise_error_if_not_sframe )dotted_name )import_from_statement (expression_statement (call (identifier__raise_error_if_not_sframe) identifier__raise_error_if_not_sframe (argument_list (identifier_dataset) identifier_dataset )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_feature) identifier_feature (call (attribute (identifier_dataset) identifier_dataset (identifier_column_names) identifier_column_names )attribute (argument_list )argument_list )call )comparison_operator (block (raise_statement (call (identifier__ToolkitError) identifier__ToolkitError (argument_list (binary_operator (string_"Feature column '%s' does not exist") string_"Feature column '%s' does not exist" (identifier_feature) identifier_feature )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (identifier_target) identifier_target (call (attribute (identifier_dataset) identifier_dataset (identifier_column_names) identifier_column_names )attribute (argument_list )argument_list )call )comparison_operator (block (raise_statement (call (identifier__ToolkitError) identifier__ToolkitError (argument_list (binary_operator (string_"Target column '%s' does not exist") string_"Target column '%s' does not exist" (identifier_target) identifier_target )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (parenthesized_expression (boolean_operator (comparison_operator (attribute (subscript (identifier_dataset) identifier_dataset (identifier_feature) identifier_feature )subscript (identifier_dtype) identifier_dtype )attribute (attribute (identifier__tc) identifier__tc (identifier_Image) identifier_Image )attribute )comparison_operator (comparison_operator (attribute (subscript (identifier_dataset) identifier_dataset (identifier_feature) identifier_feature )subscript (identifier_dtype) identifier_dtype )attribute (identifier_list) identifier_list )comparison_operator )boolean_operator )parenthesized_expression (block (raise_statement (call (identifier__ToolkitError) identifier__ToolkitError (argument_list (binary_operator (binary_operator (binary_operator (string_"Feature column must contain images") string_"Feature column must contain images" (string_" or stroke-based drawings encoded as lists of strokes") string_" or stroke-based drawings encoded as lists of strokes" )binary_operator (string_" where each stroke is a list of points and") string_" where each stroke is a list of points and" )binary_operator (string_" each point is stored as a dictionary") string_" each point is stored as a dictionary" )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (attribute (subscript (identifier_dataset) identifier_dataset (identifier_target) identifier_target )subscript (identifier_dtype) identifier_dtype )attribute (identifier_int) identifier_int )comparison_operator (comparison_operator (attribute (subscript (identifier_dataset) identifier_dataset (identifier_target) identifier_target )subscript (identifier_dtype) identifier_dtype )attribute (identifier_str) identifier_str )comparison_operator )boolean_operator (block (raise_statement (call (identifier__ToolkitError) identifier__ToolkitError (argument_list (binary_operator (binary_operator (binary_operator (string_"Target column contains ") string_"Target column contains " (call (identifier_str) identifier_str (argument_list (attribute (subscript (identifier_dataset) identifier_dataset (identifier_target) identifier_target )subscript (identifier_dtype) identifier_dtype )attribute )argument_list )call )binary_operator (string_" but it must contain strings or integers to represent") string_" but it must contain strings or integers to represent" )binary_operator (string_" labels for drawings.") string_" labels for drawings." )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_dataset) identifier_dataset )argument_list )call (integer_0) integer_0 )comparison_operator (block (raise_statement (call (identifier__ToolkitError) identifier__ToolkitError (argument_list (string_"Input Dataset is empty!") string_"Input Dataset is empty!" )argument_list )call )raise_statement )block )if_statement )block )function_definition )module
Performs some sanity checks on the SFrame provided as input to `turicreate.drawing_classifier.create` and raises a ToolkitError if something in the dataset is missing or wrong.
(module (function_definition (function_name_get_extensions) function_name_get_extensions (parameters (identifier_self) identifier_self (default_parameter (identifier_data) identifier_data (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_ext_list) identifier_ext_list (list_comprehension (identifier_key) identifier_key (for_in_clause (identifier_key) identifier_key (attribute (identifier_self) identifier_self (identifier___dict__) identifier___dict__ )attribute )for_in_clause (if_clause (comparison_operator (call (identifier_type) identifier_type (argument_list (subscript (attribute (identifier_self) identifier_self (identifier___dict__) identifier___dict__ )attribute (identifier_key) identifier_key )subscript )argument_list )call (identifier_Extension) identifier_Extension )comparison_operator )if_clause )list_comprehension )assignment )expression_statement (for_statement (identifier_key) identifier_key (identifier_ext_list) identifier_ext_list (block (if_statement (identifier_data) identifier_data (block (expression_statement (yield (call (identifier_getattr) identifier_getattr (argument_list (identifier_self) identifier_self (identifier_key) identifier_key )argument_list )call )yield )expression_statement )block (else_clause (block (expression_statement (yield (identifier_key) identifier_key )yield )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Yields the extensions or their names Parameters ---------- data : boolean, optional If True, returns a generator which yields the extensions. If False, returns a generator which yields the names of the extensions (default) Returns ------- Generator for Extension or string
(module (function_definition (function_name_linsert) function_name_linsert (parameters (identifier_self) identifier_self (identifier_key) identifier_key (identifier_pivot) identifier_pivot (identifier_value) identifier_value (default_parameter (identifier_before) identifier_before (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_where) identifier_where (conditional_expression (string_b'AFTER') string_b'AFTER' (not_operator (identifier_before) identifier_before )not_operator (string_b'BEFORE') string_b'BEFORE' )conditional_expression )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_execute) identifier_execute )attribute (argument_list (string_b'LINSERT') string_b'LINSERT' (identifier_key) identifier_key (identifier_where) identifier_where (identifier_pivot) identifier_pivot (identifier_value) identifier_value )argument_list )call )return_statement )block )function_definition )module
Inserts value in the list stored at key either before or after the reference value pivot.
(module (function_definition (function_name_to_placeholder) function_name_to_placeholder (parameters (identifier_self) identifier_self (default_parameter (identifier_name) identifier_name (None) None )default_parameter (default_parameter (identifier_db_type) identifier_db_type (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_name) identifier_name (None) None )comparison_operator (block (expression_statement (assignment (identifier_placeholder) identifier_placeholder (attribute (identifier_self) identifier_self (identifier_unnamed_placeholder) identifier_unnamed_placeholder )attribute )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_placeholder) identifier_placeholder (call (attribute (attribute (identifier_self) identifier_self (identifier_named_placeholder) identifier_named_placeholder )attribute (identifier_format) identifier_format )attribute (argument_list (identifier_name) identifier_name )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (if_statement (identifier_db_type) identifier_db_type (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_typecast) identifier_typecast )attribute (argument_list (identifier_placeholder) identifier_placeholder (identifier_db_type) identifier_db_type )argument_list )call )return_statement )block (else_clause (block (return_statement (identifier_placeholder) identifier_placeholder )return_statement )block )else_clause )if_statement )block )function_definition )module
Returns a placeholder for the specified name, by applying the instance's format strings. :name: if None an unamed placeholder is returned, otherwise a named placeholder is returned. :db_type: if not None the placeholder is typecast.
(module (function_definition (function_name_round) function_name_round (parameters (identifier_self) identifier_self (default_parameter (identifier_decimals) identifier_decimals (integer_0) integer_0 )default_parameter (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (call (attribute (identifier_nv) identifier_nv (identifier_validate_round) identifier_validate_round )attribute (argument_list (identifier_args) identifier_args (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (attribute (call (attribute (identifier_com) identifier_com (identifier_values_from_object) identifier_values_from_object )attribute (argument_list (identifier_self) identifier_self )argument_list )call (identifier_round) identifier_round )attribute (argument_list (identifier_decimals) identifier_decimals )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (attribute (call (attribute (identifier_self) identifier_self (identifier__constructor) identifier__constructor )attribute (argument_list (identifier_result) identifier_result (keyword_argument (identifier_index) identifier_index (attribute (identifier_self) identifier_self (identifier_index) identifier_index )attribute )keyword_argument )argument_list )call (identifier___finalize__) identifier___finalize__ )attribute (argument_list (identifier_self) identifier_self )argument_list )call )assignment )expression_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Round each value in a Series to the given number of decimals. Parameters ---------- decimals : int Number of decimal places to round to (default: 0). If decimals is negative, it specifies the number of positions to the left of the decimal point. Returns ------- Series Rounded values of the Series. See Also -------- numpy.around : Round values of an np.array. DataFrame.round : Round values of a DataFrame. Examples -------- >>> s = pd.Series([0.1, 1.3, 2.7]) >>> s.round() 0 0.0 1 1.0 2 3.0 dtype: float64
(module (function_definition (function_name__update_to_s3_uri) function_name__update_to_s3_uri (parameters (identifier_property_key) identifier_property_key (identifier_resource_property_dict) identifier_resource_property_dict (default_parameter (identifier_s3_uri_value) identifier_s3_uri_value (string_"s3://bucket/value") string_"s3://bucket/value" )default_parameter )parameters (block (expression_statement (assignment (identifier_uri_property) identifier_uri_property (call (attribute (identifier_resource_property_dict) identifier_resource_property_dict (identifier_get) identifier_get )attribute (argument_list (identifier_property_key) identifier_property_key (string_".") string_"." )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_uri_property) identifier_uri_property (identifier_dict) identifier_dict )argument_list )call (call (attribute (identifier_SamTemplateValidator) identifier_SamTemplateValidator (identifier_is_s3_uri) identifier_is_s3_uri )attribute (argument_list (identifier_uri_property) identifier_uri_property )argument_list )call )boolean_operator (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (subscript (identifier_resource_property_dict) identifier_resource_property_dict (identifier_property_key) identifier_property_key )subscript (identifier_s3_uri_value) identifier_s3_uri_value )assignment )expression_statement )block )function_definition )module
Updates the 'property_key' in the 'resource_property_dict' to the value of 's3_uri_value' Note: The function will mutate the resource_property_dict that is pass in Parameters ---------- property_key str, required Key in the resource_property_dict resource_property_dict dict, required Property dictionary of a Resource in the template to replace s3_uri_value str, optional Value to update the value of the property_key to
(module (function_definition (function_name_sudo) function_name_sudo (parameters (identifier_command) identifier_command (default_parameter (identifier_show) identifier_show (True) True )default_parameter (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (identifier_show) identifier_show (block (expression_statement (call (identifier_print_command) identifier_print_command (argument_list (identifier_command) identifier_command )argument_list )call )expression_statement )block )if_statement (with_statement (with_clause (with_item (call (identifier_hide) identifier_hide (argument_list (string_"running") string_"running" )argument_list )call )with_item )with_clause (block (return_statement (call (identifier__sudo) identifier__sudo (argument_list (identifier_command) identifier_command (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )with_statement )block )function_definition )module
Runs a command as sudo on the remote server.
(module (function_definition (function_name__get_inline_fragment) function_name__get_inline_fragment (parameters (identifier_ast) identifier_ast )parameters (block (if_statement (not_operator (attribute (identifier_ast) identifier_ast (identifier_selection_set) identifier_selection_set )attribute )not_operator (block (return_statement (None) None )return_statement )block )if_statement (expression_statement (assignment (identifier_fragments) identifier_fragments (list_comprehension (identifier_ast_node) identifier_ast_node (for_in_clause (identifier_ast_node) identifier_ast_node (attribute (attribute (identifier_ast) identifier_ast (identifier_selection_set) identifier_selection_set )attribute (identifier_selections) identifier_selections )attribute )for_in_clause (if_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_ast_node) identifier_ast_node (identifier_InlineFragment) identifier_InlineFragment )argument_list )call )if_clause )list_comprehension )assignment )expression_statement (if_statement (not_operator (identifier_fragments) identifier_fragments )not_operator (block (return_statement (None) None )return_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_fragments) identifier_fragments )argument_list )call (integer_1) integer_1 )comparison_operator (block (raise_statement (call (identifier_GraphQLCompilationError) identifier_GraphQLCompilationError (argument_list (concatenated_string (string_u'Cannot compile GraphQL with more than one fragment in ') string_u'Cannot compile GraphQL with more than one fragment in ' (string_u'a given selection set.') string_u'a given selection set.' )concatenated_string )argument_list )call )raise_statement )block )if_statement (return_statement (subscript (identifier_fragments) identifier_fragments (integer_0) integer_0 )subscript )return_statement )block )function_definition )module
Return the inline fragment at the current AST node, or None if no fragment exists.
(module (function_definition (function_name_SetValue) function_name_SetValue (parameters (identifier_self) identifier_self (identifier_row) identifier_row (identifier_col) identifier_col (identifier_value) identifier_value )parameters (block (expression_statement (assignment (subscript (attribute (attribute (identifier_self) identifier_self (identifier_dataframe) identifier_dataframe )attribute (identifier_iloc) identifier_iloc )attribute (identifier_row) identifier_row (identifier_col) identifier_col )subscript (identifier_value) identifier_value )assignment )expression_statement )block )function_definition )module
Set value in the pandas DataFrame
(module (function_definition (function_name_total_bytes_billed) function_name_total_bytes_billed (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_result) identifier_result (call (attribute (call (attribute (identifier_self) identifier_self (identifier__job_statistics) identifier__job_statistics )attribute (argument_list )argument_list )call (identifier_get) identifier_get )attribute (argument_list (string_"totalBytesBilled") string_"totalBytesBilled" )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_result) identifier_result (None) None )comparison_operator (block (expression_statement (assignment (identifier_result) identifier_result (call (identifier_int) identifier_int (argument_list (identifier_result) identifier_result )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Return total bytes billed from job statistics, if present. See: https://cloud.google.com/bigquery/docs/reference/rest/v2/jobs#statistics.query.totalBytesBilled :rtype: int or None :returns: total bytes processed by the job, or None if job is not yet complete.
(module (function_definition (function_name_register_provider) function_name_register_provider (parameters (identifier_cls) identifier_cls (identifier_provider) identifier_provider )parameters (block (function_definition (function_name_decorator) function_name_decorator (parameters (identifier_subclass) identifier_subclass )parameters (block (expression_statement (assignment (subscript (attribute (identifier_cls) identifier_cls (identifier__providers) identifier__providers )attribute (identifier_provider) identifier_provider )subscript (identifier_subclass) identifier_subclass )assignment )expression_statement (expression_statement (assignment (attribute (identifier_subclass) identifier_subclass (identifier_name) identifier_name )attribute (identifier_provider) identifier_provider )assignment )expression_statement (return_statement (identifier_subclass) identifier_subclass )return_statement )block )function_definition (return_statement (identifier_decorator) identifier_decorator )return_statement )block )function_definition )module
Register method to keep list of providers.
(module (function_definition (function_name_set_blacklisted_filepaths) function_name_set_blacklisted_filepaths (parameters (identifier_self) identifier_self (identifier_filepaths) identifier_filepaths (default_parameter (identifier_remove_from_stored) identifier_remove_from_stored (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier_filepaths) identifier_filepaths (call (attribute (identifier_util) identifier_util (identifier_to_absolute_paths) identifier_to_absolute_paths )attribute (argument_list (identifier_filepaths) identifier_filepaths )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_blacklisted_filepaths) identifier_blacklisted_filepaths )attribute (identifier_filepaths) identifier_filepaths )assignment )expression_statement (if_statement (identifier_remove_from_stored) identifier_remove_from_stored (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_plugin_filepaths) identifier_plugin_filepaths )attribute (call (attribute (identifier_util) identifier_util (identifier_remove_from_set) identifier_remove_from_set )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_plugin_filepaths) identifier_plugin_filepaths )attribute (identifier_filepaths) identifier_filepaths )argument_list )call )assignment )expression_statement )block )if_statement )block )function_definition )module
Sets internal blacklisted filepaths to filepaths. If `remove_from_stored` is `True`, any `filepaths` in `self.plugin_filepaths` will be automatically removed. Recommend passing in absolute filepaths but method will attempt to convert to absolute filepaths based on current working directory.
(module (function_definition (function_name_Reset) function_name_Reset (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__cur_state) identifier__cur_state )attribute (subscript (attribute (identifier_self) identifier_self (identifier_states) identifier_states )attribute (string_'Start') string_'Start' )subscript )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__cur_state_name) identifier__cur_state_name )attribute (string_'Start') string_'Start' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__result) identifier__result )attribute (list )list )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__ClearAllRecord) identifier__ClearAllRecord )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Preserves FSM but resets starting state and current record.
(module (function_definition (function_name_addattr) function_name_addattr (parameters (identifier_self) identifier_self (identifier_attrname) identifier_attrname (default_parameter (identifier_value) identifier_value (None) None )default_parameter (default_parameter (identifier_persistent) identifier_persistent (True) True )default_parameter )parameters (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_self) identifier_self (identifier_attrname) identifier_attrname (identifier_value) identifier_value )argument_list )call )expression_statement (if_statement (boolean_operator (identifier_persistent) identifier_persistent (comparison_operator (identifier_attrname) identifier_attrname (attribute (identifier_self) identifier_self (identifier___persistent_attributes__) identifier___persistent_attributes__ )attribute )comparison_operator )boolean_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier___persistent_attributes__) identifier___persistent_attributes__ )attribute (identifier_append) identifier_append )attribute (argument_list (identifier_attrname) identifier_attrname )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Adds an attribute to self. If persistent is True, the attribute will be made a persistent attribute. Persistent attributes are copied whenever a view or copy of this array is created. Otherwise, new views or copies of this will not have the attribute.
(module (function_definition (function_name__compute_intensity) function_name__compute_intensity (parameters (identifier_ccube) identifier_ccube (identifier_bexpcube) identifier_bexpcube )parameters (block (expression_statement (assignment (identifier_bexp_data) identifier_bexp_data (call (attribute (identifier_np) identifier_np (identifier_sqrt) identifier_sqrt )attribute (argument_list (binary_operator (subscript (attribute (identifier_bexpcube) identifier_bexpcube (identifier_data) identifier_data )attribute (slice (integer_0) integer_0 (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice (slice (integer_0) integer_0 (colon) colon )slice )subscript (subscript (attribute (identifier_bexpcube) identifier_bexpcube (identifier_data) identifier_data )attribute (slice (integer_1) integer_1 (colon) colon )slice (slice (integer_0) integer_0 (colon) colon )slice )subscript )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_intensity_data) identifier_intensity_data (binary_operator (attribute (identifier_ccube) identifier_ccube (identifier_data) identifier_data )attribute (identifier_bexp_data) identifier_bexp_data )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_intensity_map) identifier_intensity_map (call (identifier_HpxMap) identifier_HpxMap (argument_list (identifier_intensity_data) identifier_intensity_data (attribute (identifier_ccube) identifier_ccube (identifier_hpx) identifier_hpx )attribute )argument_list )call )assignment )expression_statement (return_statement (identifier_intensity_map) identifier_intensity_map )return_statement )block )function_definition )module
Compute the intensity map
(module (function_definition (function_name_set_created_date) function_name_set_created_date (parameters (identifier_self) identifier_self (default_parameter (identifier_date) identifier_date (None) None )default_parameter )parameters (block (if_statement (identifier_date) identifier_date (block (expression_statement (assignment (identifier_match) identifier_match (call (attribute (identifier_re) identifier_re (identifier_match) identifier_match )attribute (argument_list (identifier_DATE_REGEX) identifier_DATE_REGEX (identifier_date) identifier_date )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_match) identifier_match )not_operator (block (raise_statement (call (identifier_IOCParseError) identifier_IOCParseError (argument_list (string_'Created date is not valid. Must be in the form YYYY-MM-DDTHH:MM:SS') string_'Created date is not valid. Must be in the form YYYY-MM-DDTHH:MM:SS' )argument_list )call )raise_statement )block )if_statement )block )if_statement (expression_statement (call (attribute (identifier_ioc_et) identifier_ioc_et (identifier_set_root_created_date) identifier_set_root_created_date )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_root) identifier_root )attribute (identifier_date) identifier_date )argument_list )call )expression_statement (return_statement (True) True )return_statement )block )function_definition )module
Set the created date of a IOC to the current date. User may specify the date they want to set as well. :param date: Date value to set the created date to. This should be in the xsdDate form. This defaults to the current date if it is not provided. xsdDate form: YYYY-MM-DDTHH:MM:SS :return: True :raises: IOCParseError if date format is not valid.
(module (function_definition (function_name_os_walk) function_name_os_walk (parameters (identifier_top) identifier_top (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (boolean_operator (attribute (identifier_six) identifier_six (identifier_PY2) identifier_PY2 )attribute (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_platform) identifier_platform )attribute (identifier_is_windows) identifier_is_windows )attribute (argument_list )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_top_query) identifier_top_query (identifier_top) identifier_top )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_top_query) identifier_top_query (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_stringutils) identifier_stringutils )attribute (identifier_to_str) identifier_to_str )attribute (argument_list (identifier_top) identifier_top )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (for_statement (identifier_item) identifier_item (call (attribute (identifier_os) identifier_os (identifier_walk) identifier_walk )attribute (argument_list (identifier_top_query) identifier_top_query (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call (block (expression_statement (yield (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_data) identifier_data )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_item) identifier_item (keyword_argument (identifier_preserve_tuples) identifier_preserve_tuples (True) True )keyword_argument )argument_list )call )yield )expression_statement )block )for_statement )block )function_definition )module
This is a helper than ensures that all paths returned from os.walk are unicode.
(module (function_definition (function_name_commit) function_name_commit (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_request) identifier_request (call (attribute (call (attribute (call (attribute (identifier_self) identifier_self (identifier_edits) identifier_edits )attribute (argument_list )argument_list )call (identifier_commit) identifier_commit )attribute (argument_list (dictionary_splat (call (attribute (identifier_self) identifier_self (identifier_build_params) identifier_build_params )attribute (argument_list )argument_list )call )dictionary_splat )argument_list )call (identifier_execute) identifier_execute )attribute (argument_list )argument_list )call )assignment )expression_statement (print_statement (binary_operator (string_'Edit "%s" has been committed') string_'Edit "%s" has been committed' (parenthesized_expression (subscript (identifier_request) identifier_request (string_'id') string_'id' )subscript )parenthesized_expression )binary_operator )print_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_edit_id) identifier_edit_id )attribute (None) None )assignment )expression_statement )block )function_definition )module
commit current edits.
(module (function_definition (function_name_simplex_projection) function_name_simplex_projection (parameters (identifier_v) identifier_v (default_parameter (identifier_b) identifier_b (integer_1) integer_1 )default_parameter )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (expression_statement (assignment (identifier_v) identifier_v (call (attribute (identifier_np) identifier_np (identifier_asarray) identifier_asarray )attribute (argument_list (identifier_v) identifier_v )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_p) identifier_p (call (identifier_len) identifier_len (argument_list (identifier_v) identifier_v )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_v) identifier_v (binary_operator (parenthesized_expression (comparison_operator (identifier_v) identifier_v (integer_0) integer_0 )comparison_operator )parenthesized_expression (identifier_v) identifier_v )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_u) identifier_u (subscript (call (attribute (identifier_np) identifier_np (identifier_sort) identifier_sort )attribute (argument_list (identifier_v) identifier_v )argument_list )call (slice (colon) colon (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )assignment )expression_statement (expression_statement (assignment (identifier_sv) identifier_sv (call (attribute (identifier_np) identifier_np (identifier_cumsum) identifier_cumsum )attribute (argument_list (identifier_u) identifier_u )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_rho) identifier_rho (subscript (subscript (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (comparison_operator (identifier_u) identifier_u (binary_operator (parenthesized_expression (binary_operator (identifier_sv) identifier_sv (identifier_b) identifier_b )binary_operator )parenthesized_expression (call (attribute (identifier_np) identifier_np (identifier_arange) identifier_arange )attribute (argument_list (integer_1) integer_1 (binary_operator (identifier_p) identifier_p (integer_1) integer_1 )binary_operator )argument_list )call )binary_operator )comparison_operator )argument_list )call (integer_0) integer_0 )subscript (unary_operator (integer_1) integer_1 )unary_operator )subscript )assignment )expression_statement (expression_statement (assignment (identifier_theta) identifier_theta (call (attribute (identifier_np) identifier_np (identifier_max) identifier_max )attribute (argument_list (list (integer_0) integer_0 (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_sv) identifier_sv (identifier_rho) identifier_rho )subscript (identifier_b) identifier_b )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (identifier_rho) identifier_rho (integer_1) integer_1 )binary_operator )parenthesized_expression )binary_operator )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_w) identifier_w (parenthesized_expression (binary_operator (identifier_v) identifier_v (identifier_theta) identifier_theta )binary_operator )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (subscript (identifier_w) identifier_w (comparison_operator (identifier_w) identifier_w (integer_0) integer_0 )comparison_operator )subscript (integer_0) integer_0 )assignment )expression_statement (return_statement (identifier_w) identifier_w )return_statement )block )function_definition )module
r"""Projection vectors to the simplex domain Implemented according to the paper: Efficient projections onto the l1-ball for learning in high dimensions, John Duchi, et al. ICML 2008. Implementation Time: 2011 June 17 by Bin@libin AT pmail.ntu.edu.sg Optimization Problem: min_{w}\| w - v \|_{2}^{2} s.t. sum_{i=1}^{m}=z, w_{i}\geq 0 Input: A vector v \in R^{m}, and a scalar z > 0 (default=1) Output: Projection vector w :Example: >>> proj = simplex_projection([.4 ,.3, -.4, .5]) >>> proj # doctest: +NORMALIZE_WHITESPACE array([ 0.33333333, 0.23333333, 0. , 0.43333333]) >>> print(proj.sum()) 1.0 Original matlab implementation: John Duchi (jduchi@cs.berkeley.edu) Python-port: Copyright 2013 by Thomas Wiecki (thomas.wiecki@gmail.com).
(module (function_definition (function_name__aux_types) function_name__aux_types (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_aux_types) identifier_aux_types (list )list )assignment )expression_statement (expression_statement (assignment (identifier_num_aux) identifier_num_aux (attribute (identifier_self) identifier_self (identifier__num_aux) identifier__num_aux )attribute )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (identifier_num_aux) identifier_num_aux )argument_list )call (block (expression_statement (call (attribute (identifier_aux_types) identifier_aux_types (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__aux_type) identifier__aux_type )attribute (argument_list (identifier_i) identifier_i )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_aux_types) identifier_aux_types )return_statement )block )function_definition )module
The data types of the aux data for the BaseSparseNDArray.
(module (function_definition (function_name_escape_newlines) function_name_escape_newlines (parameters (typed_parameter (identifier_s) identifier_s (type (identifier_str) identifier_str )type )typed_parameter )parameters (type (identifier_str) identifier_str )type (block (if_statement (not_operator (identifier_s) identifier_s )not_operator (block (return_statement (identifier_s) identifier_s )return_statement )block )if_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_s) identifier_s (identifier_replace) identifier_replace )attribute (argument_list (string_"\\") string_"\\" (string_r"\\") string_r"\\" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_s) identifier_s (identifier_replace) identifier_replace )attribute (argument_list (string_"\n") string_"\n" (string_r"\n") string_r"\n" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_s) identifier_s (identifier_replace) identifier_replace )attribute (argument_list (string_"\r") string_"\r" (string_r"\r") string_r"\r" )argument_list )call )assignment )expression_statement (return_statement (identifier_s) identifier_s )return_statement )block )function_definition )module
Escapes CR, LF, and backslashes. Its counterpart is :func:`unescape_newlines`. ``s.encode("string_escape")`` and ``s.encode("unicode_escape")`` are alternatives, but they mess around with quotes, too (specifically, backslash-escaping single quotes).
(module (function_definition (function_name_uncontract_general) function_name_uncontract_general (parameters (identifier_basis) identifier_basis (default_parameter (identifier_use_copy) identifier_use_copy (True) True )default_parameter )parameters (block (if_statement (identifier_use_copy) identifier_use_copy (block (expression_statement (assignment (identifier_basis) identifier_basis (call (attribute (identifier_copy) identifier_copy (identifier_deepcopy) identifier_deepcopy )attribute (argument_list (identifier_basis) identifier_basis )argument_list )call )assignment )expression_statement )block )if_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_el) identifier_el )pattern_list (call (attribute (subscript (identifier_basis) identifier_basis (string_'elements') string_'elements' )subscript (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (if_statement (not_operator (comparison_operator (string_'electron_shells') string_'electron_shells' (identifier_el) identifier_el )comparison_operator )not_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_newshells) identifier_newshells (list )list )assignment )expression_statement (for_statement (identifier_sh) identifier_sh (subscript (identifier_el) identifier_el (string_'electron_shells') string_'electron_shells' )subscript (block (if_statement (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (subscript (identifier_sh) identifier_sh (string_'coefficients') string_'coefficients' )subscript )argument_list )call (integer_1) integer_1 )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (subscript (identifier_sh) identifier_sh (string_'angular_momentum') string_'angular_momentum' )subscript )argument_list )call (integer_1) integer_1 )comparison_operator )boolean_operator (block (expression_statement (call (attribute (identifier_newshells) identifier_newshells (identifier_append) identifier_append )attribute (argument_list (identifier_sh) identifier_sh )argument_list )call )expression_statement )block (else_clause (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (subscript (identifier_sh) identifier_sh (string_'angular_momentum') string_'angular_momentum' )subscript )argument_list )call (integer_1) integer_1 )comparison_operator (block (for_statement (identifier_c) identifier_c (subscript (identifier_sh) identifier_sh (string_'coefficients') string_'coefficients' )subscript (block (expression_statement (assignment (identifier_newsh) identifier_newsh (call (attribute (identifier_sh) identifier_sh (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_newsh) identifier_newsh (string_'coefficients') string_'coefficients' )subscript (list (identifier_c) identifier_c )list )assignment )expression_statement (expression_statement (call (attribute (identifier_newshells) identifier_newshells (identifier_append) identifier_append )attribute (argument_list (identifier_newsh) identifier_newsh )argument_list )call )expression_statement )block )for_statement )block )if_statement )block )else_clause )if_statement )block )for_statement (expression_statement (assignment (subscript (identifier_el) identifier_el (string_'electron_shells') string_'electron_shells' )subscript (identifier_newshells) identifier_newshells )assignment )expression_statement )block )for_statement (return_statement (call (identifier_prune_basis) identifier_prune_basis (argument_list (identifier_basis) identifier_basis (False) False )argument_list )call )return_statement )block )function_definition )module
Removes the general contractions from a basis set The input basis set is not modified. The returned basis may have functions with coefficients of zero and may have duplicate shells. If use_copy is True, the input basis set is not modified.
(module (function_definition (function_name_Images2Rgbd) function_name_Images2Rgbd (parameters (identifier_rgb) identifier_rgb (identifier_d) identifier_d )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (identifier_Rgbd) identifier_Rgbd (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_data) identifier_data (identifier_color) identifier_color )attribute (call (identifier_imageMsg2Image) identifier_imageMsg2Image (argument_list (identifier_rgb) identifier_rgb )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_data) identifier_data (identifier_depth) identifier_depth )attribute (call (identifier_imageMsg2Image) identifier_imageMsg2Image (argument_list (identifier_d) identifier_d )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_data) identifier_data (identifier_timeStamp) identifier_timeStamp )attribute (binary_operator (attribute (attribute (attribute (identifier_rgb) identifier_rgb (identifier_header) identifier_header )attribute (identifier_stamp) identifier_stamp )attribute (identifier_secs) identifier_secs )attribute (parenthesized_expression (binary_operator (attribute (attribute (attribute (identifier_rgb) identifier_rgb (identifier_header) identifier_header )attribute (identifier_stamp) identifier_stamp )attribute (identifier_nsecs) identifier_nsecs )attribute (float_1e-9) float_1e-9 )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
Translates from ROS Images to JderobotTypes Rgbd. @param rgb: ROS color Image to translate @param d: ROS depth image to translate @type rgb: ImageROS @type d: ImageROS @return a Rgbd translated from Images
(module (function_definition (function_name_validate_value) function_name_validate_value (parameters (identifier_self) identifier_self (identifier_value) identifier_value )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_readonly) identifier_readonly )attribute (block (raise_statement (call (identifier_ValidationError) identifier_ValidationError (argument_list (attribute (identifier_self) identifier_self (identifier_record) identifier_record )attribute (call (attribute (string_"Cannot set readonly field '{}'") string_"Cannot set readonly field '{}'" (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (identifier_value) identifier_value (tuple (None) None (attribute (identifier_self) identifier_self (identifier__unset) identifier__unset )attribute )tuple )comparison_operator (block (if_statement (boolean_operator (attribute (identifier_self) identifier_self (identifier_supported_types) identifier_supported_types )attribute (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (call (identifier_tuple) identifier_tuple (argument_list (attribute (identifier_self) identifier_self (identifier_supported_types) identifier_supported_types )attribute )argument_list )call )argument_list )call )not_operator )boolean_operator (block (raise_statement (call (identifier_ValidationError) identifier_ValidationError (argument_list (attribute (identifier_self) identifier_self (identifier_record) identifier_record )attribute (call (attribute (string_"Field '{}' expects one of {}, got '{}' instead") string_"Field '{}' expects one of {}, got '{}' instead" (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute (call (attribute (string_', ') string_', ' (identifier_join) identifier_join )attribute (argument_list (list_comprehension (call (identifier_repr) identifier_repr (argument_list (attribute (identifier_t) identifier_t (identifier___name__) identifier___name__ )attribute )argument_list )call (for_in_clause (identifier_t) identifier_t (attribute (identifier_self) identifier_self (identifier_supported_types) identifier_supported_types )attribute )for_in_clause )list_comprehension )argument_list )call (attribute (call (identifier_type) identifier_type (argument_list (identifier_value) identifier_value )argument_list )call (identifier___name__) identifier___name__ )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement )block )if_statement )block )function_definition )module
Validate value is an acceptable type during set_python operation
(module (function_definition (function_name_between) function_name_between (parameters (identifier_self) identifier_self (typed_parameter (identifier_objs1) identifier_objs1 (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_float) identifier_float )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_objs2) identifier_objs2 (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_float) identifier_float )type )type_parameter )generic_type )type )typed_parameter (default_parameter (identifier_n) identifier_n (integer_1) integer_1 )default_parameter )parameters (block (import_from_statement (dotted_name (identifier_desdeo) identifier_desdeo (identifier_preference) identifier_preference (identifier_base) identifier_base )dotted_name (dotted_name (identifier_ReferencePoint) identifier_ReferencePoint )dotted_name )import_from_statement (expression_statement (assignment (identifier_objs1_arr) identifier_objs1_arr (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_objs1) identifier_objs1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_objs2_arr) identifier_objs2_arr (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_objs2) identifier_objs2 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_segments) identifier_segments (binary_operator (identifier_n) identifier_n (integer_1) integer_1 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_diff) identifier_diff (binary_operator (identifier_objs2_arr) identifier_objs2_arr (identifier_objs1_arr) identifier_objs1_arr )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_solutions) identifier_solutions (list )list )assignment )expression_statement (for_statement (identifier_x) identifier_x (call (identifier_range) identifier_range (argument_list (integer_1) integer_1 (identifier_segments) identifier_segments )argument_list )call (block (expression_statement (assignment (identifier_btwn_obj) identifier_btwn_obj (binary_operator (identifier_objs1_arr) identifier_objs1_arr (binary_operator (binary_operator (call (identifier_float) identifier_float (argument_list (identifier_x) identifier_x )argument_list )call (identifier_segments) identifier_segments )binary_operator (identifier_diff) identifier_diff )binary_operator )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_solutions) identifier_solutions (identifier_append) identifier_append )attribute (argument_list (call (attribute (call (attribute (identifier_self) identifier_self (identifier__get_ach) identifier__get_ach )attribute (argument_list )argument_list )call (identifier_result) identifier_result )attribute (argument_list (call (identifier_ReferencePoint) identifier_ReferencePoint (argument_list (identifier_self) identifier_self (identifier_btwn_obj) identifier_btwn_obj )argument_list )call (None) None )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (call (identifier_ResultSet) identifier_ResultSet (argument_list (identifier_solutions) identifier_solutions )argument_list )call )return_statement )block )function_definition )module
Generate `n` solutions which attempt to trade-off `objs1` and `objs2`. Parameters ---------- objs1 First boundary point for desired objective function values objs2 Second boundary point for desired objective function values n Number of solutions to generate
(module (function_definition (function_name_process_item) function_name_process_item (parameters (identifier_self) identifier_self (identifier_item) identifier_item )parameters (block (expression_statement (assignment (pattern_list (identifier_group) identifier_group (identifier_value) identifier_value )pattern_list (expression_list (subscript (identifier_item) identifier_item (string_'group') string_'group' )subscript (subscript (identifier_item) identifier_item (string_'value') string_'value' )subscript )expression_list )assignment )expression_statement (if_statement (comparison_operator (identifier_group) identifier_group (attribute (identifier_self) identifier_self (identifier__groups) identifier__groups )attribute )comparison_operator (block (expression_statement (assignment (identifier_cur_val) identifier_cur_val (subscript (attribute (identifier_self) identifier_self (identifier__groups) identifier__groups )attribute (identifier_group) identifier_group )subscript )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__groups) identifier__groups )attribute (identifier_group) identifier_group )subscript (call (identifier_max) identifier_max (argument_list (identifier_cur_val) identifier_cur_val (identifier_value) identifier_value )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier__src) identifier__src )attribute (identifier_tracking) identifier_tracking )attribute (False) False )assignment )expression_statement (expression_statement (assignment (identifier_new_max) identifier_new_max (identifier_value) identifier_value )assignment )expression_statement (for_statement (identifier_rec) identifier_rec (call (attribute (attribute (identifier_self) identifier_self (identifier__src) identifier__src )attribute (identifier_query) identifier_query )attribute (argument_list (keyword_argument (identifier_criteria) identifier_criteria (dictionary (pair (string_'group') string_'group' (identifier_group) identifier_group )pair )dictionary )keyword_argument (keyword_argument (identifier_properties) identifier_properties (list (string_'value') string_'value' )list )keyword_argument )argument_list )call (block (expression_statement (assignment (identifier_new_max) identifier_new_max (call (identifier_max) identifier_max (argument_list (identifier_new_max) identifier_new_max (subscript (identifier_rec) identifier_rec (string_'value') string_'value' )subscript )argument_list )call )assignment )expression_statement )block )for_statement (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier__src) identifier__src )attribute (identifier_tracking) identifier_tracking )attribute (True) True )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__groups) identifier__groups )attribute (identifier_group) identifier_group )subscript (identifier_new_max) identifier_new_max )assignment )expression_statement )block )else_clause )if_statement )block )function_definition )module
Calculate new maximum value for each group, for "new" items only.
(module (function_definition (function_name_PmfProbLess) function_name_PmfProbLess (parameters (identifier_pmf1) identifier_pmf1 (identifier_pmf2) identifier_pmf2 )parameters (block (expression_statement (assignment (identifier_total) identifier_total (float_0.0) float_0.0 )assignment )expression_statement (for_statement (pattern_list (identifier_v1) identifier_v1 (identifier_p1) identifier_p1 )pattern_list (call (attribute (identifier_pmf1) identifier_pmf1 (identifier_Items) identifier_Items )attribute (argument_list )argument_list )call (block (for_statement (pattern_list (identifier_v2) identifier_v2 (identifier_p2) identifier_p2 )pattern_list (call (attribute (identifier_pmf2) identifier_pmf2 (identifier_Items) identifier_Items )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (identifier_v1) identifier_v1 (identifier_v2) identifier_v2 )comparison_operator (block (expression_statement (augmented_assignment (identifier_total) identifier_total (binary_operator (identifier_p1) identifier_p1 (identifier_p2) identifier_p2 )binary_operator )augmented_assignment )expression_statement )block )if_statement )block )for_statement )block )for_statement (return_statement (identifier_total) identifier_total )return_statement )block )function_definition )module
Probability that a value from pmf1 is less than a value from pmf2. Args: pmf1: Pmf object pmf2: Pmf object Returns: float probability
(module (function_definition (function_name__GetStatus) function_name__GetStatus (parameters (identifier_self) identifier_self (default_parameter (identifier_two_factor) identifier_two_factor (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_params) identifier_params (list (string_'status') string_'status' )list )assignment )expression_statement (if_statement (identifier_two_factor) identifier_two_factor (block (expression_statement (augmented_assignment (identifier_params) identifier_params (list (string_'--twofactor') string_'--twofactor' )list )augmented_assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_retcode) identifier_retcode (call (attribute (identifier_self) identifier_self (identifier__RunOsLoginControl) identifier__RunOsLoginControl )attribute (argument_list (identifier_params) identifier_params )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_retcode) identifier_retcode (None) None )comparison_operator (block (if_statement (attribute (identifier_self) identifier_self (identifier_oslogin_installed) identifier_oslogin_installed )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute (identifier_warning) identifier_warning )attribute (argument_list (string_'OS Login not installed.') string_'OS Login not installed.' )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_oslogin_installed) identifier_oslogin_installed )attribute (False) False )assignment )expression_statement )block )if_statement (return_statement (None) None )return_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_oslogin_installed) identifier_oslogin_installed )attribute (True) True )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (attribute (identifier_constants) identifier_constants (identifier_OSLOGIN_NSS_CACHE) identifier_OSLOGIN_NSS_CACHE )attribute )argument_list )call )not_operator (block (return_statement (False) False )return_statement )block )if_statement (return_statement (not_operator (identifier_retcode) identifier_retcode )not_operator )return_statement )block )function_definition )module
Check whether OS Login is installed. Args: two_factor: bool, True if two factor should be enabled. Returns: bool, True if OS Login is installed.
(module (function_definition (function_name_load_remote_settings) function_name_load_remote_settings (parameters (identifier_self) identifier_self (identifier_remote_bucket) identifier_remote_bucket (identifier_remote_file) identifier_remote_file )parameters (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier_session) identifier_session )attribute )not_operator (block (expression_statement (assignment (identifier_boto_session) identifier_boto_session (call (attribute (identifier_boto3) identifier_boto3 (identifier_Session) identifier_Session )attribute (argument_list )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_boto_session) identifier_boto_session (attribute (identifier_self) identifier_self (identifier_session) identifier_session )attribute )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_s3) identifier_s3 (call (attribute (identifier_boto_session) identifier_boto_session (identifier_resource) identifier_resource )attribute (argument_list (string_'s3') string_'s3' )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_remote_env_object) identifier_remote_env_object (call (attribute (call (attribute (identifier_s3) identifier_s3 (identifier_Object) identifier_Object )attribute (argument_list (identifier_remote_bucket) identifier_remote_bucket (identifier_remote_file) identifier_remote_file )argument_list )call (identifier_get) identifier_get )attribute (argument_list )argument_list )call )assignment )expression_statement )block (except_clause (as_pattern (identifier_Exception) identifier_Exception (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'Could not load remote settings file.') string_'Could not load remote settings file.' (identifier_e) identifier_e )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement (try_statement (block (expression_statement (assignment (identifier_content) identifier_content (call (attribute (subscript (identifier_remote_env_object) identifier_remote_env_object (string_'Body') string_'Body' )subscript (identifier_read) identifier_read )attribute (argument_list )argument_list )call )assignment )expression_statement )block (except_clause (as_pattern (identifier_Exception) identifier_Exception (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'Exception while reading remote settings file.') string_'Exception while reading remote settings file.' (identifier_e) identifier_e )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement (try_statement (block (expression_statement (assignment (identifier_settings_dict) identifier_settings_dict (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (identifier_content) identifier_content )argument_list )call )assignment )expression_statement )block (except_clause (tuple (identifier_ValueError) identifier_ValueError (identifier_TypeError) identifier_TypeError )tuple (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'Failed to parse remote settings!') string_'Failed to parse remote settings!' )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement (for_statement (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (attribute (identifier_settings_dict) identifier_settings_dict (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (attribute (attribute (identifier_self) identifier_self (identifier_settings) identifier_settings )attribute (identifier_LOG_LEVEL) identifier_LOG_LEVEL )attribute (string_"DEBUG") string_"DEBUG" )comparison_operator (block (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_'Adding {} -> {} to environment') string_'Adding {} -> {} to environment' (identifier_format) identifier_format )attribute (argument_list (identifier_key) identifier_key (identifier_value) identifier_value )argument_list )call )argument_list )call )expression_statement )block )if_statement (try_statement (block (expression_statement (assignment (subscript (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (call (identifier_str) identifier_str (argument_list (identifier_key) identifier_key )argument_list )call )subscript (identifier_value) identifier_value )assignment )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (if_statement (comparison_operator (attribute (attribute (identifier_self) identifier_self (identifier_settings) identifier_settings )attribute (identifier_LOG_LEVEL) identifier_LOG_LEVEL )attribute (string_"DEBUG") string_"DEBUG" )comparison_operator (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"Environment variable keys must be non-unicode!") string_"Environment variable keys must be non-unicode!" )argument_list )call )expression_statement )block )if_statement )block )except_clause )try_statement )block )for_statement )block )function_definition )module
Attempt to read a file from s3 containing a flat json object. Adds each key->value pair as environment variables. Helpful for keeping sensitiZve or stage-specific configuration variables in s3 instead of version control.