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(module (function_definition (function_name_end_of_line) function_name_end_of_line (parameters (identifier_event) identifier_event )parameters (block (expression_statement (string_" Move to the end of the line. ") string_" Move to the end of the line. " )expression_statement (expression_statement (assignment (identifier_buff) identifier_buff (attribute (identifier_event) identifier_event (identifier_current_buffer) identifier_current_buffer )attribute )assignment )expression_statement (expression_statement (augmented_assignment (attribute (identifier_buff) identifier_buff (identifier_cursor_position) identifier_cursor_position )attribute (call (attribute (attribute (identifier_buff) identifier_buff (identifier_document) identifier_document )attribute (identifier_get_end_of_line_position) identifier_get_end_of_line_position )attribute (argument_list )argument_list )call )augmented_assignment )expression_statement )block )function_definition )module
Move to the end of the line.
(module (function_definition (function_name_iterator) function_name_iterator (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_default_language) identifier_default_language (call (identifier_getattr) identifier_getattr (argument_list (identifier_self) identifier_self (string_'_default_language') string_'_default_language' (None) None )argument_list )call )assignment )expression_statement (for_statement (identifier_obj) identifier_obj (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_MultilingualModelQuerySet) identifier_MultilingualModelQuerySet (identifier_self) identifier_self )argument_list )call (identifier_iterator) identifier_iterator )attribute (argument_list )argument_list )call (block (expression_statement (assignment (attribute (identifier_obj) identifier_obj (identifier__default_language) identifier__default_language )attribute (identifier_default_language) identifier_default_language )assignment )expression_statement (expression_statement (yield (identifier_obj) identifier_obj )yield )expression_statement )block )for_statement )block )function_definition )module
Add the default language information to all returned objects.
(module (function_definition (function_name_add_group) function_name_add_group (parameters (identifier_self) identifier_self (identifier_groupname) identifier_groupname (identifier_statements) identifier_statements )parameters (block (expression_statement (assignment (identifier_msg) identifier_msg (call (attribute (identifier_OmapiMessage) identifier_OmapiMessage (identifier_open) identifier_open )attribute (argument_list (string_b"group") string_b"group" )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_msg) identifier_msg (identifier_message) identifier_message )attribute (identifier_append) identifier_append )attribute (argument_list (tuple (string_"create") string_"create" (call (attribute (identifier_struct) identifier_struct (identifier_pack) identifier_pack )attribute (argument_list (string_"!I") string_"!I" (integer_1) integer_1 )argument_list )call )tuple )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_msg) identifier_msg (identifier_obj) identifier_obj )attribute (identifier_append) identifier_append )attribute (argument_list (tuple (string_"name") string_"name" (identifier_groupname) identifier_groupname )tuple )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_msg) identifier_msg (identifier_obj) identifier_obj )attribute (identifier_append) identifier_append )attribute (argument_list (tuple (string_"statements") string_"statements" (identifier_statements) identifier_statements )tuple )argument_list )call )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_self) identifier_self (identifier_query_server) identifier_query_server )attribute (argument_list (identifier_msg) identifier_msg )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_response) identifier_response (identifier_opcode) identifier_opcode )attribute (identifier_OMAPI_OP_UPDATE) identifier_OMAPI_OP_UPDATE )comparison_operator (block (raise_statement (call (identifier_OmapiError) identifier_OmapiError (argument_list (string_"add group failed") string_"add group failed" )argument_list )call )raise_statement )block )if_statement )block )function_definition )module
Adds a group @type groupname: bytes @type statements: str
(module (function_definition (function_name_diagonal_line) function_name_diagonal_line (parameters (default_parameter (identifier_xi) identifier_xi (None) None )default_parameter (default_parameter (identifier_yi) identifier_yi (None) None )default_parameter (keyword_separator )keyword_separator (default_parameter (identifier_ax) identifier_ax (None) None )default_parameter (default_parameter (identifier_c) identifier_c (None) None )default_parameter (default_parameter (identifier_ls) identifier_ls (None) None )default_parameter (default_parameter (identifier_lw) identifier_lw (None) None )default_parameter (default_parameter (identifier_zorder) identifier_zorder (integer_3) integer_3 )default_parameter )parameters (block (if_statement (comparison_operator (identifier_ax) identifier_ax (None) None )comparison_operator (block (expression_statement (assignment (identifier_ax) identifier_ax (call (attribute (identifier_plt) identifier_plt (identifier_gca) identifier_gca )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_xi) identifier_xi (None) None )comparison_operator (block (expression_statement (assignment (identifier_xi) identifier_xi (call (attribute (identifier_ax) identifier_ax (identifier_get_xlim) identifier_get_xlim )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_yi) identifier_yi (None) None )comparison_operator (block (expression_statement (assignment (identifier_yi) identifier_yi (call (attribute (identifier_ax) identifier_ax (identifier_get_ylim) identifier_get_ylim )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_c) identifier_c (None) None )comparison_operator (block (expression_statement (assignment (identifier_c) identifier_c (subscript (attribute (identifier_matplotlib) identifier_matplotlib (identifier_rcParams) identifier_rcParams )attribute (string_"grid.color") string_"grid.color" )subscript )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_ls) identifier_ls (None) None )comparison_operator (block (expression_statement (assignment (identifier_ls) identifier_ls (subscript (attribute (identifier_matplotlib) identifier_matplotlib (identifier_rcParams) identifier_rcParams )attribute (string_"grid.linestyle") string_"grid.linestyle" )subscript )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_lw) identifier_lw (None) None )comparison_operator (block (expression_statement (assignment (identifier_lw) identifier_lw (subscript (attribute (identifier_matplotlib) identifier_matplotlib (identifier_rcParams) identifier_rcParams )attribute (string_"grid.linewidth") string_"grid.linewidth" )subscript )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_ax) identifier_ax (None) None )comparison_operator (block (expression_statement (assignment (identifier_ax) identifier_ax (call (attribute (identifier_plt) identifier_plt (identifier_gca) identifier_gca )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_diag_min) identifier_diag_min (call (identifier_max) identifier_max (argument_list (call (identifier_min) identifier_min (argument_list (identifier_xi) identifier_xi )argument_list )call (call (identifier_min) identifier_min (argument_list (identifier_yi) identifier_yi )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_diag_max) identifier_diag_max (call (identifier_min) identifier_min (argument_list (call (identifier_max) identifier_max (argument_list (identifier_xi) identifier_xi )argument_list )call (call (identifier_max) identifier_max (argument_list (identifier_yi) identifier_yi )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_line) identifier_line (call (attribute (identifier_ax) identifier_ax (identifier_plot) identifier_plot )attribute (argument_list (list (identifier_diag_min) identifier_diag_min (identifier_diag_max) identifier_diag_max )list (list (identifier_diag_min) identifier_diag_min (identifier_diag_max) identifier_diag_max )list (keyword_argument (identifier_c) identifier_c (identifier_c) identifier_c )keyword_argument (keyword_argument (identifier_ls) identifier_ls (identifier_ls) identifier_ls )keyword_argument (keyword_argument (identifier_lw) identifier_lw (identifier_lw) identifier_lw )keyword_argument (keyword_argument (identifier_zorder) identifier_zorder (identifier_zorder) identifier_zorder )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_line) identifier_line )return_statement )block )function_definition )module
Plot a diagonal line. Parameters ---------- xi : 1D array-like (optional) The x axis points. If None, taken from axis limits. Default is None. yi : 1D array-like The y axis points. If None, taken from axis limits. Default is None. ax : axis (optional) Axis to plot on. If none is supplied, the current axis is used. c : string (optional) Line color. Default derives from rcParams grid color. ls : string (optional) Line style. Default derives from rcParams linestyle. lw : float (optional) Line width. Default derives from rcParams linewidth. zorder : number (optional) Matplotlib zorder. Default is 3. Returns ------- matplotlib.lines.Line2D object The plotted line.
(module (function_definition (function_name_decode) function_name_decode (parameters (identifier_self) identifier_self (identifier_data) identifier_data (default_parameter (identifier_password) identifier_password (None) None )default_parameter )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_password) identifier_password )attribute (identifier_password) identifier_password )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute (call (attribute (attribute (identifier_gntp) identifier_gntp (identifier_shim) identifier_shim )attribute (identifier_u) identifier_u )attribute (argument_list (identifier_data) identifier_data )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_parts) identifier_parts (call (attribute (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute (identifier_split) identifier_split )attribute (argument_list (string_'\r\n\r\n') string_'\r\n\r\n' )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_info) identifier_info )attribute (call (attribute (identifier_self) identifier_self (identifier__parse_info) identifier__parse_info )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_headers) identifier_headers )attribute (call (attribute (identifier_self) identifier_self (identifier__parse_dict) identifier__parse_dict )attribute (argument_list (subscript (identifier_parts) identifier_parts (integer_0) integer_0 )subscript )argument_list )call )assignment )expression_statement )block )function_definition )module
Decode GNTP Message :param string data:
(module (function_definition (function_name_as_dict) function_name_as_dict (parameters (identifier_self) identifier_self (typed_default_parameter (identifier_quiet) identifier_quiet (type (identifier_bool) identifier_bool )type (False) False )typed_default_parameter (typed_default_parameter (identifier_infer_type_and_cast) identifier_infer_type_and_cast (type (identifier_bool) identifier_bool )type (False) False )typed_default_parameter )parameters (block (if_statement (identifier_infer_type_and_cast) identifier_infer_type_and_cast (block (expression_statement (assignment (identifier_params_as_dict) identifier_params_as_dict (call (identifier_infer_and_cast) identifier_infer_and_cast (argument_list (attribute (identifier_self) identifier_self (identifier_params) identifier_params )attribute )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_params_as_dict) identifier_params_as_dict (attribute (identifier_self) identifier_self (identifier_params) identifier_params )attribute )assignment )expression_statement )block )else_clause )if_statement (if_statement (identifier_quiet) identifier_quiet (block (return_statement (identifier_params_as_dict) identifier_params_as_dict )return_statement )block )if_statement (function_definition (function_name_log_recursively) function_name_log_recursively (parameters (identifier_parameters) identifier_parameters (identifier_history) identifier_history )parameters (block (for_statement (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (attribute (identifier_parameters) identifier_parameters (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (identifier_dict) identifier_dict )argument_list )call (block (expression_statement (assignment (identifier_new_local_history) identifier_new_local_history (binary_operator (binary_operator (identifier_history) identifier_history (identifier_key) identifier_key )binary_operator (string_".") string_"." )binary_operator )assignment )expression_statement (expression_statement (call (identifier_log_recursively) identifier_log_recursively (argument_list (identifier_value) identifier_value (identifier_new_local_history) identifier_new_local_history )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (binary_operator (binary_operator (identifier_history) identifier_history (identifier_key) identifier_key )binary_operator (string_" = ") string_" = " )binary_operator (call (identifier_str) identifier_str (argument_list (identifier_value) identifier_value )argument_list )call )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (concatenated_string (string_"Converting Params object to dict; logging of default ") string_"Converting Params object to dict; logging of default " (string_"values will not occur when dictionary parameters are ") string_"values will not occur when dictionary parameters are " (string_"used subsequently.") string_"used subsequently." )concatenated_string )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (string_"CURRENTLY DEFINED PARAMETERS: ") string_"CURRENTLY DEFINED PARAMETERS: " )argument_list )call )expression_statement (expression_statement (call (identifier_log_recursively) identifier_log_recursively (argument_list (attribute (identifier_self) identifier_self (identifier_params) identifier_params )attribute (attribute (identifier_self) identifier_self (identifier_history) identifier_history )attribute )argument_list )call )expression_statement (return_statement (identifier_params_as_dict) identifier_params_as_dict )return_statement )block )function_definition )module
Sometimes we need to just represent the parameters as a dict, for instance when we pass them to PyTorch code. Parameters ---------- quiet: bool, optional (default = False) Whether to log the parameters before returning them as a dict. infer_type_and_cast : bool, optional (default = False) If True, we infer types and cast (e.g. things that look like floats to floats).
(module (function_definition (function_name__is_socket) function_name__is_socket (parameters (identifier_cls) identifier_cls (identifier_stream) identifier_stream )parameters (block (try_statement (block (expression_statement (assignment (identifier_fd) identifier_fd (call (attribute (identifier_stream) identifier_stream (identifier_fileno) identifier_fileno )attribute (argument_list )argument_list )call )assignment )expression_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (return_statement (False) False )return_statement )block )except_clause )try_statement (expression_statement (assignment (identifier_sock) identifier_sock (call (attribute (identifier_socket) identifier_socket (identifier_fromfd) identifier_fromfd )attribute (argument_list (identifier_fd) identifier_fd (attribute (identifier_socket) identifier_socket (identifier_AF_INET) identifier_AF_INET )attribute (attribute (identifier_socket) identifier_socket (identifier_SOCK_RAW) identifier_SOCK_RAW )attribute )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_sock) identifier_sock (identifier_getsockopt) identifier_getsockopt )attribute (argument_list (attribute (identifier_socket) identifier_socket (identifier_SOL_SOCKET) identifier_SOL_SOCKET )attribute (attribute (identifier_socket) identifier_socket (identifier_SO_TYPE) identifier_SO_TYPE )attribute )argument_list )call )expression_statement )block (except_clause (as_pattern (attribute (identifier_socket) identifier_socket (identifier_error) identifier_error )attribute (as_pattern_target (identifier_ex) identifier_ex )as_pattern_target )as_pattern (block (if_statement (comparison_operator (subscript (attribute (identifier_ex) identifier_ex (identifier_args) identifier_args )attribute (integer_0) integer_0 )subscript (attribute (identifier_errno) identifier_errno (identifier_ENOTSOCK) identifier_ENOTSOCK )attribute )comparison_operator (block (return_statement (True) True )return_statement )block )if_statement )block )except_clause (else_clause (block (return_statement (True) True )return_statement )block )else_clause )try_statement )block )function_definition )module
Check if the given stream is a socket.
(module (function_definition (function_name_get_setting) function_name_get_setting (parameters (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (for_statement (identifier_name) identifier_name (identifier_args) identifier_args (block (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_settings) identifier_settings (identifier_name) identifier_name )argument_list )call (block (return_statement (call (identifier_getattr) identifier_getattr (argument_list (identifier_settings) identifier_settings (identifier_name) identifier_name )argument_list )call )return_statement )block )if_statement )block )for_statement (if_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'raise_error') string_'raise_error' (False) False )argument_list )call (block (expression_statement (assignment (identifier_setting_url) identifier_setting_url (binary_operator (identifier_url) identifier_url (call (attribute (call (attribute (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (string_'_') string_'_' (string_'-') string_'-' )argument_list )call )binary_operator )assignment )expression_statement (raise_statement (call (identifier_ImproperlyConfigured) identifier_ImproperlyConfigured (argument_list (binary_operator (concatenated_string (string_'Please make sure you specified at ') string_'Please make sure you specified at ' (string_'least one of these settings: %s \r\nDocumentation: %s') string_'least one of these settings: %s \r\nDocumentation: %s' )concatenated_string (tuple (identifier_args) identifier_args (identifier_setting_url) identifier_setting_url )tuple )binary_operator )argument_list )call )raise_statement )block )if_statement (return_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'default_value') string_'default_value' (None) None )argument_list )call )return_statement )block )function_definition )module
Get a setting and raise an appropriate user friendly error if the setting is not found.
(module (function_definition (function_name__response) function_name__response (parameters (identifier_self) identifier_self (identifier_pdu) identifier_pdu )parameters (block (if_statement (identifier__debug) identifier__debug (block (expression_statement (call (attribute (identifier_UDPDirector) identifier_UDPDirector (identifier__debug) identifier__debug )attribute (argument_list (string_"_response %r") string_"_response %r" (identifier_pdu) identifier_pdu )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_addr) identifier_addr (attribute (identifier_pdu) identifier_pdu (identifier_pduSource) identifier_pduSource )attribute )assignment )expression_statement (expression_statement (assignment (identifier_peer) identifier_peer (call (attribute (attribute (identifier_self) identifier_self (identifier_peers) identifier_peers )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_addr) identifier_addr (None) None )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_peer) identifier_peer )not_operator (block (expression_statement (assignment (identifier_peer) identifier_peer (call (attribute (identifier_self) identifier_self (identifier_actorClass) identifier_actorClass )attribute (argument_list (identifier_self) identifier_self (identifier_addr) identifier_addr )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_peer) identifier_peer (identifier_response) identifier_response )attribute (argument_list (identifier_pdu) identifier_pdu )argument_list )call )expression_statement )block )function_definition )module
Incoming datagrams are routed through an actor.
(module (function_definition (function_name_walk) function_name_walk (parameters (identifier_self) identifier_self (identifier_oid) identifier_oid (identifier_host) identifier_host (identifier_port) identifier_port (identifier_community) identifier_community )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_oid) identifier_oid (identifier_tuple) identifier_tuple )argument_list )call )not_operator (block (expression_statement (assignment (identifier_oid) identifier_oid (call (attribute (identifier_self) identifier_self (identifier__convert_to_oid) identifier__convert_to_oid )attribute (argument_list (identifier_oid) identifier_oid )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_host) identifier_host (call (attribute (identifier_socket) identifier_socket (identifier_gethostbyname) identifier_gethostbyname )attribute (argument_list (identifier_host) identifier_host )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_snmpAuthData) identifier_snmpAuthData (call (attribute (identifier_cmdgen) identifier_cmdgen (identifier_CommunityData) identifier_CommunityData )attribute (argument_list (call (attribute (string_'agent-{}') string_'agent-{}' (identifier_format) identifier_format )attribute (argument_list (identifier_community) identifier_community )argument_list )call (identifier_community) identifier_community )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_snmpTransportData) identifier_snmpTransportData (call (attribute (identifier_cmdgen) identifier_cmdgen (identifier_UdpTransportTarget) identifier_UdpTransportTarget )attribute (argument_list (tuple (identifier_host) identifier_host (identifier_port) identifier_port )tuple (call (identifier_int) identifier_int (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (string_'timeout') string_'timeout' )subscript )argument_list )call (call (identifier_int) identifier_int (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (string_'retries') string_'retries' )subscript )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_resultTable) identifier_resultTable (call (attribute (attribute (identifier_self) identifier_self (identifier_snmpCmdGen) identifier_snmpCmdGen )attribute (identifier_nextCmd) identifier_nextCmd )attribute (argument_list (identifier_snmpAuthData) identifier_snmpAuthData (identifier_snmpTransportData) identifier_snmpTransportData (identifier_oid) identifier_oid )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_varBindTable) identifier_varBindTable (subscript (identifier_resultTable) identifier_resultTable (integer_3) integer_3 )subscript )assignment )expression_statement (for_statement (identifier_varBindTableRow) identifier_varBindTableRow (identifier_varBindTable) identifier_varBindTable (block (for_statement (pattern_list (identifier_o) identifier_o (identifier_v) identifier_v )pattern_list (identifier_varBindTableRow) identifier_varBindTableRow (block (expression_statement (assignment (subscript (identifier_ret) identifier_ret (call (identifier_str) identifier_str (argument_list (identifier_o) identifier_o )argument_list )call )subscript (call (attribute (identifier_v) identifier_v (identifier_prettyPrint) identifier_prettyPrint )attribute (argument_list )argument_list )call )assignment )expression_statement )block )for_statement )block )for_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Perform an SNMP walk on a given OID
(module (function_definition (function_name_init_word_db) function_name_init_word_db (parameters (identifier_cls) identifier_cls (identifier_name) identifier_name (identifier_text) identifier_text )parameters (block (expression_statement (assignment (identifier_text) identifier_text (call (attribute (call (attribute (identifier_text) identifier_text (identifier_replace) identifier_replace )attribute (argument_list (string_'\n') string_'\n' (string_' ') string_' ' )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (string_'\r') string_'\r' (string_' ') string_' ' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_words) identifier_words (list_comprehension (call (attribute (identifier_w) identifier_w (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call (for_in_clause (identifier_w) identifier_w (call (attribute (identifier_text) identifier_text (identifier_split) identifier_split )attribute (argument_list (string_' ') string_' ' )argument_list )call )for_in_clause (if_clause (call (attribute (identifier_w) identifier_w (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )if_clause )list_comprehension )assignment )expression_statement (assert_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_words) identifier_words )argument_list )call (integer_2) integer_2 )comparison_operator (string_'Database text sources must contain 3 or more words.') string_'Database text sources must contain 3 or more words.' )assert_statement (expression_statement (assignment (identifier_freqs) identifier_freqs (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_words) identifier_words )argument_list )call (integer_2) integer_2 )binary_operator )argument_list )call (block (expression_statement (assignment (identifier_w1) identifier_w1 (subscript (identifier_words) identifier_words (identifier_i) identifier_i )subscript )assignment )expression_statement (expression_statement (assignment (identifier_w2) identifier_w2 (subscript (identifier_words) identifier_words (binary_operator (identifier_i) identifier_i (integer_1) integer_1 )binary_operator )subscript )assignment )expression_statement (expression_statement (assignment (identifier_w3) identifier_w3 (subscript (identifier_words) identifier_words (binary_operator (identifier_i) identifier_i (integer_2) integer_2 )binary_operator )subscript )assignment )expression_statement (expression_statement (assignment (identifier_key) identifier_key (tuple (identifier_w1) identifier_w1 (identifier_w2) identifier_w2 )tuple )assignment )expression_statement (if_statement (comparison_operator (identifier_key) identifier_key (identifier_freqs) identifier_freqs )comparison_operator (block (expression_statement (call (attribute (subscript (identifier_freqs) identifier_freqs (identifier_key) identifier_key )subscript (identifier_append) identifier_append )attribute (argument_list (identifier_w3) identifier_w3 )argument_list )call )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (identifier_freqs) identifier_freqs (identifier_key) identifier_key )subscript (list (identifier_w3) identifier_w3 )list )assignment )expression_statement )block )else_clause )if_statement )block )for_statement (expression_statement (assignment (subscript (attribute (identifier_cls) identifier_cls (identifier__dbs) identifier__dbs )attribute (identifier_name) identifier_name )subscript (dictionary (pair (string_'freqs') string_'freqs' (identifier_freqs) identifier_freqs )pair (pair (string_'words') string_'words' (identifier_words) identifier_words )pair (pair (string_'word_count') string_'word_count' (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_words) identifier_words )argument_list )call (integer_2) integer_2 )binary_operator )pair )dictionary )assignment )expression_statement )block )function_definition )module
Initialize a database of words for the maker with the given name
(module (function_definition (function_name_blt) function_name_blt (parameters (typed_parameter (identifier_f) identifier_f (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_SYM) identifier_SYM )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_x) identifier_x (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_SYM) identifier_SYM )type )type_parameter )generic_type )type )typed_parameter )parameters (type (generic_type (identifier_Dict) identifier_Dict (type_parameter (type (identifier_str) identifier_str )type (type (identifier_Any) identifier_Any )type )type_parameter )generic_type )type (block (expression_statement (assignment (identifier_J) identifier_J (call (attribute (identifier_ca) identifier_ca (identifier_jacobian) identifier_jacobian )attribute (argument_list (identifier_f) identifier_f (identifier_x) identifier_x )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_nblock) identifier_nblock (identifier_rowperm) identifier_rowperm (identifier_colperm) identifier_colperm (identifier_rowblock) identifier_rowblock (identifier_colblock) identifier_colblock (identifier_coarserow) identifier_coarserow (identifier_coarsecol) identifier_coarsecol )pattern_list (call (attribute (call (attribute (identifier_J) identifier_J (identifier_sparsity) identifier_sparsity )attribute (argument_list )argument_list )call (identifier_btf) identifier_btf )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (dictionary (pair (string_'J') string_'J' (identifier_J) identifier_J )pair (pair (string_'nblock') string_'nblock' (identifier_nblock) identifier_nblock )pair (pair (string_'rowperm') string_'rowperm' (identifier_rowperm) identifier_rowperm )pair (pair (string_'colperm') string_'colperm' (identifier_colperm) identifier_colperm )pair (pair (string_'rowblock') string_'rowblock' (identifier_rowblock) identifier_rowblock )pair (pair (string_'colblock') string_'colblock' (identifier_colblock) identifier_colblock )pair (pair (string_'coarserow') string_'coarserow' (identifier_coarserow) identifier_coarserow )pair (pair (string_'coarsecol') string_'coarsecol' (identifier_coarsecol) identifier_coarsecol )pair )dictionary )return_statement )block )function_definition )module
Sort equations by dependence
(module (function_definition (function_name__debugGraph) function_name__debugGraph (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"Len of graph: ") string_"Len of graph: " (call (identifier_len) identifier_len (argument_list (attribute (identifier_self) identifier_self (identifier_rdflib_graph) identifier_rdflib_graph )attribute )argument_list )call )argument_list )call )expression_statement (for_statement (pattern_list (identifier_x) identifier_x (identifier_y) identifier_y (identifier_z) identifier_z )pattern_list (attribute (identifier_self) identifier_self (identifier_rdflib_graph) identifier_rdflib_graph )attribute (block (expression_statement (call (identifier_print) identifier_print (argument_list (identifier_x) identifier_x (identifier_y) identifier_y (identifier_z) identifier_z )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
internal util to print out contents of graph
(module (function_definition (function_name_parse_log_line) function_name_parse_log_line (parameters (identifier_line) identifier_line )parameters (block (expression_statement (assignment (identifier_matches) identifier_matches (call (attribute (identifier_re) identifier_re (identifier_search) identifier_search )attribute (argument_list (string_r'^\[([^\]]+)\] ([^:]+: .*)') string_r'^\[([^\]]+)\] ([^:]+: .*)' (identifier_line) identifier_line )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_error) identifier_error (call (attribute (identifier_re) identifier_re (identifier_search) identifier_search )attribute (argument_list (string_r'Traceback') string_r'Traceback' (identifier_line) identifier_line )argument_list )call )assignment )expression_statement (if_statement (identifier_error) identifier_error (block (return_statement (dictionary (pair (string_'line') string_'line' (identifier_line) identifier_line )pair (pair (string_'step') string_'step' (string_'error') string_'error' )pair )dictionary )return_statement )block )if_statement (if_statement (not_operator (identifier_matches) identifier_matches )not_operator (block (return_statement (dictionary (pair (string_'line') string_'line' (identifier_line) identifier_line )pair (pair (string_'step') string_'step' (None) None )pair )dictionary )return_statement )block )if_statement (expression_statement (assignment (identifier_tstamp) identifier_tstamp (call (attribute (identifier_matches) identifier_matches (identifier_group) identifier_group )attribute (argument_list (integer_1) integer_1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_msg) identifier_msg (call (attribute (identifier_matches) identifier_matches (identifier_group) identifier_group )attribute (argument_list (integer_2) integer_2 )argument_list )call )assignment )expression_statement (if_statement (not_operator (comparison_operator (call (attribute (identifier_msg) identifier_msg (identifier_find) identifier_find )attribute (argument_list (string_'Timing: ') string_'Timing: ' )argument_list )call (integer_0) integer_0 )comparison_operator )not_operator (block (return_statement (dictionary (pair (string_'line') string_'line' (identifier_line) identifier_line )pair (pair (string_'step') string_'step' (None) None )pair )dictionary )return_statement )block )if_statement (expression_statement (assignment (identifier_when) identifier_when (call (attribute (call (attribute (identifier_datetime) identifier_datetime (identifier_strptime) identifier_strptime )attribute (argument_list (identifier_tstamp) identifier_tstamp (string_'%Y-%m-%dT%H:%MZ') string_'%Y-%m-%dT%H:%MZ' )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (keyword_argument (identifier_tzinfo) identifier_tzinfo (call (attribute (identifier_pytz) identifier_pytz (identifier_timezone) identifier_timezone )attribute (argument_list (string_'UTC') string_'UTC' )argument_list )call )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_step) identifier_step (call (attribute (subscript (call (attribute (identifier_msg) identifier_msg (identifier_split) identifier_split )attribute (argument_list (string_":") string_":" )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )subscript (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (dictionary (pair (string_'line') string_'line' (identifier_line) identifier_line )pair (pair (string_'step') string_'step' (identifier_step) identifier_step )pair (pair (string_'when') string_'when' (identifier_when) identifier_when )pair )dictionary )return_statement )block )function_definition )module
Parses a log line and returns it with more information :param line: str - A line from a bcbio-nextgen log :returns dict: A dictionary containing the line, if its a new step if its a Traceback or if the analysis is finished
(module (function_definition (function_name_draw) function_name_draw (parameters (identifier_board) identifier_board (identifier_term) identifier_term (identifier_cells) identifier_cells )parameters (block (for_statement (pattern_list (tuple_pattern (identifier_x) identifier_x (identifier_y) identifier_y )tuple_pattern (identifier_state) identifier_state )pattern_list (call (attribute (identifier_board) identifier_board (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (with_statement (with_clause (with_item (call (attribute (identifier_term) identifier_term (identifier_location) identifier_location )attribute (argument_list (identifier_x) identifier_x (identifier_y) identifier_y )argument_list )call )with_item )with_clause (block (print_statement (subscript (identifier_cells) identifier_cells (identifier_state) identifier_state )subscript )print_statement )block )with_statement )block )for_statement )block )function_definition )module
Draw a board to the terminal.
(module (function_definition (function_name_reverse) function_name_reverse (parameters (identifier_self) identifier_self )parameters (block (if_statement (call (attribute (identifier_self) identifier_self (identifier_closed) identifier_closed )attribute (argument_list )argument_list )call (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (concatenated_string (string_"Attempt to call reverse() on a ") string_"Attempt to call reverse() on a " (string_"closed Queryable.") string_"closed Queryable." )concatenated_string )argument_list )call )raise_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_r) identifier_r (call (identifier_reversed) identifier_reversed (argument_list (attribute (identifier_self) identifier_self (identifier__iterable) identifier__iterable )attribute )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__create) identifier__create )attribute (argument_list (identifier_r) identifier_r )argument_list )call )return_statement )block (except_clause (identifier_TypeError) identifier_TypeError (block (pass_statement )pass_statement )block )except_clause )try_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__create) identifier__create )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__generate_reverse_result) identifier__generate_reverse_result )attribute (argument_list )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Returns the sequence reversed. Note: This method uses deferred execution, but the whole source sequence is consumed once execution commences. Returns: The source sequence in reverse order. Raises: ValueError: If the Queryable is closed().
(module (function_definition (function_name_vector_str) function_name_vector_str (parameters (identifier_p) identifier_p (default_parameter (identifier_decimal_places) identifier_decimal_places (integer_2) integer_2 )default_parameter (default_parameter (identifier_print_zero) identifier_print_zero (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier_style) identifier_style (binary_operator (binary_operator (string_'{0:.') string_'{0:.' (call (identifier_str) identifier_str (argument_list (identifier_decimal_places) identifier_decimal_places )argument_list )call )binary_operator (string_'f}') string_'f}' )binary_operator )assignment )expression_statement (return_statement (call (attribute (string_'[{0}]') string_'[{0}]' (identifier_format) identifier_format )attribute (argument_list (call (attribute (string_", ") string_", " (identifier_join) identifier_join )attribute (argument_list (list_comprehension (conditional_expression (string_' ') string_' ' (boolean_operator (not_operator (identifier_print_zero) identifier_print_zero )not_operator (comparison_operator (identifier_a) identifier_a (integer_0) integer_0 )comparison_operator )boolean_operator (call (attribute (identifier_style) identifier_style (identifier_format) identifier_format )attribute (argument_list (identifier_a) identifier_a )argument_list )call )conditional_expression (for_in_clause (identifier_a) identifier_a (identifier_p) identifier_p )for_in_clause )list_comprehension )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Pretty-print the vector values.
(module (function_definition (function_name__trigger) function_name__trigger (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__completed) identifier__completed )attribute (identifier_set) identifier_set )attribute (argument_list )argument_list )call )expression_statement (for_statement (identifier_callback) identifier_callback (attribute (identifier_self) identifier_self (identifier__callbacks) identifier__callbacks )attribute (block (expression_statement (call (identifier_callback) identifier_callback (argument_list (identifier_self) identifier_self )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Trigger all callbacks registered to this Future. This method is called internally by the batch once the batch completes. Args: message_id (str): The message ID, as a string.
(module (function_definition (function_name_nearest_subpackage) function_name_nearest_subpackage (parameters (identifier_cls) identifier_cls (identifier_package) identifier_package (identifier_all_packages) identifier_all_packages )parameters (block (function_definition (function_name_shared_prefix) function_name_shared_prefix (parameters (identifier_candidate) identifier_candidate )parameters (block (expression_statement (assignment (identifier_zipped) identifier_zipped (call (identifier_zip) identifier_zip (argument_list (call (attribute (identifier_package) identifier_package (identifier_split) identifier_split )attribute (argument_list (string_'.') string_'.' )argument_list )call (call (attribute (identifier_candidate) identifier_candidate (identifier_split) identifier_split )attribute (argument_list (string_'.') string_'.' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_matching) identifier_matching (call (attribute (identifier_itertools) identifier_itertools (identifier_takewhile) identifier_takewhile )attribute (argument_list (lambda (lambda_parameters (identifier_pair) identifier_pair )lambda_parameters (comparison_operator (subscript (identifier_pair) identifier_pair (integer_0) integer_0 )subscript (subscript (identifier_pair) identifier_pair (integer_1) integer_1 )subscript )comparison_operator )lambda (identifier_zipped) identifier_zipped )argument_list )call )assignment )expression_statement (return_statement (list_comprehension (subscript (identifier_pair) identifier_pair (integer_0) integer_0 )subscript (for_in_clause (identifier_pair) identifier_pair (identifier_matching) identifier_matching )for_in_clause )list_comprehension )return_statement )block )function_definition (expression_statement (assignment (identifier_shared_packages) identifier_shared_packages (list_comprehension (identifier__f) identifier__f (for_in_clause (identifier__f) identifier__f (call (identifier_map) identifier_map (argument_list (identifier_shared_prefix) identifier_shared_prefix (identifier_all_packages) identifier_all_packages )argument_list )call )for_in_clause (if_clause (identifier__f) identifier__f )if_clause )list_comprehension )assignment )expression_statement (return_statement (conditional_expression (call (attribute (string_'.') string_'.' (identifier_join) identifier_join )attribute (argument_list (call (identifier_max) identifier_max (argument_list (identifier_shared_packages) identifier_shared_packages (keyword_argument (identifier_key) identifier_key (identifier_len) identifier_len )keyword_argument )argument_list )call )argument_list )call (identifier_shared_packages) identifier_shared_packages (identifier_package) identifier_package )conditional_expression )return_statement )block )function_definition )module
Given a package, find its nearest parent in all_packages.
(module (function_definition (function_name_draw) function_name_draw (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (identifier_glPushAttrib) identifier_glPushAttrib (argument_list (identifier_GL_ALL_ATTRIB_BITS) identifier_GL_ALL_ATTRIB_BITS )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_draw_score) identifier_draw_score )attribute (argument_list )argument_list )call )expression_statement (for_statement (identifier_sprite) identifier_sprite (identifier_self) identifier_self (block (expression_statement (call (attribute (identifier_sprite) identifier_sprite (identifier_draw) identifier_draw )attribute (argument_list )argument_list )call )expression_statement )block )for_statement (expression_statement (call (identifier_glPopAttrib) identifier_glPopAttrib (argument_list )argument_list )call )expression_statement )block )function_definition )module
Draw all the sprites in the system using their renderers. This method is convenient to call from you Pyglet window's on_draw handler to redraw particles when needed.
(module (function_definition (function_name_remove_metadata_key) function_name_remove_metadata_key (parameters (identifier_self) identifier_self (identifier_obj) identifier_obj (identifier_key) identifier_key )parameters (block (expression_statement (assignment (identifier_meta_dict) identifier_meta_dict (dictionary (pair (identifier_key) identifier_key (string_"") string_"" )pair )dictionary )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_set_metadata) identifier_set_metadata )attribute (argument_list (identifier_obj) identifier_obj (identifier_meta_dict) identifier_meta_dict )argument_list )call )return_statement )block )function_definition )module
Removes the specified key from the object's metadata. If the key does not exist in the metadata, nothing is done.
(module (function_definition (function_name_predecessors) function_name_predecessors (parameters (identifier_self) identifier_self (identifier_node) identifier_node (default_parameter (identifier_exclude_compressed) identifier_exclude_compressed (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier_preds) identifier_preds (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_Graph) identifier_Graph (identifier_self) identifier_self )argument_list )call (identifier_predecessors) identifier_predecessors )attribute (argument_list (identifier_node) identifier_node )argument_list )call )assignment )expression_statement (if_statement (identifier_exclude_compressed) identifier_exclude_compressed (block (return_statement (list_comprehension (identifier_n) identifier_n (for_in_clause (identifier_n) identifier_n (identifier_preds) identifier_preds )for_in_clause (if_clause (not_operator (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_node) identifier_node )attribute (identifier_n) identifier_n )subscript (identifier_get) identifier_get )attribute (argument_list (string_'compressed') string_'compressed' (False) False )argument_list )call )not_operator )if_clause )list_comprehension )return_statement )block (else_clause (block (return_statement (identifier_preds) identifier_preds )return_statement )block )else_clause )if_statement )block )function_definition )module
Returns the list of predecessors of a given node Parameters ---------- node : str The target node exclude_compressed : boolean If true, compressed nodes are excluded from the predecessors list Returns ------- list List of predecessors nodes
(module (function_definition (function_name_normalize_result) function_name_normalize_result (parameters (identifier_result) identifier_result (identifier_default) identifier_default (default_parameter (identifier_threshold) identifier_threshold (float_0.2) float_0.2 )default_parameter )parameters (block (if_statement (comparison_operator (identifier_result) identifier_result (None) None )comparison_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (if_statement (comparison_operator (call (attribute (identifier_result) identifier_result (identifier_get) identifier_get )attribute (argument_list (string_'confidence') string_'confidence' )argument_list )call (None) None )comparison_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (if_statement (comparison_operator (call (attribute (identifier_result) identifier_result (identifier_get) identifier_get )attribute (argument_list (string_'confidence') string_'confidence' )argument_list )call (identifier_threshold) identifier_threshold )comparison_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (return_statement (call (identifier_normalize_encoding) identifier_normalize_encoding (argument_list (call (attribute (identifier_result) identifier_result (identifier_get) identifier_get )attribute (argument_list (string_'encoding') string_'encoding' )argument_list )call (keyword_argument (identifier_default) identifier_default (identifier_default) identifier_default )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Interpret a chardet result.
(module (function_definition (function_name_merge_tags) function_name_merge_tags (parameters (identifier_left) identifier_left (identifier_right) identifier_right (default_parameter (identifier_factory) identifier_factory (identifier_Tags) identifier_Tags )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_left) identifier_left (identifier_Mapping) identifier_Mapping )argument_list )call (block (expression_statement (assignment (identifier_tags) identifier_tags (call (identifier_dict) identifier_dict (argument_list (identifier_left) identifier_left )argument_list )call )assignment )expression_statement )block (elif_clause (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_left) identifier_left (string_'tags') string_'tags' )argument_list )call (block (expression_statement (assignment (identifier_tags) identifier_tags (call (identifier__tags_to_dict) identifier__tags_to_dict (argument_list (attribute (identifier_left) identifier_left (identifier_tags) identifier_tags )attribute )argument_list )call )assignment )expression_statement )block )elif_clause (else_clause (block (expression_statement (assignment (identifier_tags) identifier_tags (call (identifier__tags_to_dict) identifier__tags_to_dict (argument_list (identifier_left) identifier_left )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_right) identifier_right (identifier_Mapping) identifier_Mapping )argument_list )call (block (expression_statement (call (attribute (identifier_tags) identifier_tags (identifier_update) identifier_update )attribute (argument_list (identifier_right) identifier_right )argument_list )call )expression_statement )block (elif_clause (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_left) identifier_left (string_'tags') string_'tags' )argument_list )call (block (expression_statement (call (attribute (identifier_tags) identifier_tags (identifier_update) identifier_update )attribute (argument_list (call (identifier__tags_to_dict) identifier__tags_to_dict (argument_list (attribute (identifier_right) identifier_right (identifier_tags) identifier_tags )attribute )argument_list )call )argument_list )call )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (identifier_tags) identifier_tags (identifier_update) identifier_update )attribute (argument_list (call (identifier__tags_to_dict) identifier__tags_to_dict (argument_list (identifier_right) identifier_right )argument_list )call )argument_list )call )expression_statement )block )else_clause )if_statement (return_statement (call (identifier_factory) identifier_factory (argument_list (dictionary_splat (identifier_tags) identifier_tags )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Merge two sets of tags into a new troposphere object Args: left (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with lower priority right (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with higher priority factory (type): Type of object to create. Defaults to the troposphere Tags class.
(module (function_definition (function_name_create_exclude_rules) function_name_create_exclude_rules (parameters (identifier_args) identifier_args )parameters (block (global_statement (identifier__cached_exclude_rules) identifier__cached_exclude_rules )global_statement (if_statement (comparison_operator (identifier__cached_exclude_rules) identifier__cached_exclude_rules (None) None )comparison_operator (block (return_statement (identifier__cached_exclude_rules) identifier__cached_exclude_rules )return_statement )block )if_statement (expression_statement (assignment (identifier_rules) identifier_rules (list )list )assignment )expression_statement (for_statement (identifier_excl_path) identifier_excl_path (attribute (identifier_args) identifier_args (identifier_exclude) identifier_exclude )attribute (block (expression_statement (assignment (identifier_abspath) identifier_abspath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_args) identifier_args (identifier_root) identifier_root )attribute (identifier_excl_path) identifier_excl_path )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_rules) identifier_rules (identifier_append) identifier_append )attribute (argument_list (tuple (identifier_abspath) identifier_abspath (True) True )tuple )argument_list )call )expression_statement )block )for_statement (for_statement (identifier_incl_path) identifier_incl_path (attribute (identifier_args) identifier_args (identifier_include) identifier_include )attribute (block (expression_statement (assignment (identifier_abspath) identifier_abspath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_args) identifier_args (identifier_root) identifier_root )attribute (identifier_incl_path) identifier_incl_path )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_rules) identifier_rules (identifier_append) identifier_append )attribute (argument_list (tuple (identifier_abspath) identifier_abspath (False) False )tuple )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier__cached_exclude_rules) identifier__cached_exclude_rules (call (identifier_sorted) identifier_sorted (argument_list (identifier_rules) identifier_rules (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_p) identifier_p )lambda_parameters (subscript (identifier_p) identifier_p (integer_0) integer_0 )subscript )lambda )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier__cached_exclude_rules) identifier__cached_exclude_rules )return_statement )block )function_definition )module
Creates the exlude rules
(module (function_definition (function_name_difference) function_name_difference (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_others) identifier_others )list_splat_pattern )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_copy) identifier_copy )attribute (argument_list (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_NGram) identifier_NGram (identifier_self) identifier_self )argument_list )call (identifier_difference) identifier_difference )attribute (argument_list (list_splat (identifier_others) identifier_others )list_splat )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Return the difference of two or more sets as a new set. >>> from ngram import NGram >>> a = NGram(['spam', 'eggs']) >>> b = NGram(['spam', 'ham']) >>> list(a.difference(b)) ['eggs']
(module (function_definition (function_name_hasKey) function_name_hasKey (parameters (identifier_self) identifier_self (identifier_key) identifier_key (default_parameter (identifier_notNone) identifier_notNone (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_result) identifier_result (list )list )assignment )expression_statement (expression_statement (assignment (identifier_result_tracker) identifier_result_tracker (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_counter) identifier_counter (identifier_row) identifier_row )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (attribute (identifier_self) identifier_self (identifier_table) identifier_table )attribute )argument_list )call (block (expression_statement (assignment (tuple_pattern (identifier_target) identifier_target (identifier__) identifier__ (identifier_value) identifier_value )tuple_pattern (call (attribute (identifier_internal) identifier_internal (identifier_dict_crawl) identifier_dict_crawl )attribute (argument_list (identifier_row) identifier_row (identifier_key) identifier_key )argument_list )call )assignment )expression_statement (if_statement (identifier_target) identifier_target (block (if_statement (boolean_operator (comparison_operator (identifier_notNone) identifier_notNone (False) False )comparison_operator (not_operator (comparison_operator (identifier_value) identifier_value (None) None )comparison_operator )not_operator )boolean_operator (block (expression_statement (call (attribute (identifier_result) identifier_result (identifier_append) identifier_append )attribute (argument_list (identifier_row) identifier_row )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_result_tracker) identifier_result_tracker (identifier_append) identifier_append )attribute (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_index_track) identifier_index_track )attribute (identifier_counter) identifier_counter )subscript )argument_list )call )expression_statement )block )if_statement )block )if_statement )block )for_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_table) identifier_table )attribute (identifier_result) identifier_result )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_index_track) identifier_index_track )attribute (identifier_result_tracker) identifier_result_tracker )assignment )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Return entries where the key is present. Example of use: >>> test = [ ... {"name": "Jim", "age": 18, "income": 93000, "wigs": 68 }, ... {"name": "Larry", "age": 18, "wigs": [3, 2, 9]}, ... {"name": "Joe", "age": 20, "income": None , "wigs": [1, 2, 3]}, ... {"name": "Bill", "age": 19, "income": 29000 }, ... ] >>> print PLOD(test).hasKey("income").returnString() [ {age: 18, income: 93000, name: 'Jim' , wigs: 68}, {age: 20, income: None , name: 'Joe' , wigs: [1, 2, 3]}, {age: 19, income: 29000, name: 'Bill', wigs: None } ] >>> print PLOD(test).hasKey("income", notNone=True).returnString() [ {age: 18, income: 93000, name: 'Jim' , wigs: 68}, {age: 19, income: 29000, name: 'Bill', wigs: None} ] .. versionadded:: 0.1.2 :param key: The dictionary key (or cascading list of keys) to locate. :param notNone: If True, then None is the equivalent of a missing key. Otherwise, a key with a value of None is NOT considered missing. :returns: self
(module (function_definition (function_name_sub_tags) function_name_sub_tags (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_tags) identifier_tags )list_splat_pattern (dictionary_splat_pattern (identifier_kw) identifier_kw )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_records) identifier_records (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier_sub_records) identifier_sub_records )attribute )for_in_clause (if_clause (comparison_operator (attribute (identifier_x) identifier_x (identifier_tag) identifier_tag )attribute (identifier_tags) identifier_tags )comparison_operator )if_clause )list_comprehension )assignment )expression_statement (if_statement (call (attribute (identifier_kw) identifier_kw (identifier_get) identifier_get )attribute (argument_list (string_'follow') string_'follow' (True) True )argument_list )call (block (expression_statement (assignment (identifier_records) identifier_records (list_comprehension (conditional_expression (attribute (identifier_rec) identifier_rec (identifier_ref) identifier_ref )attribute (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_rec) identifier_rec (identifier_Pointer) identifier_Pointer )argument_list )call (identifier_rec) identifier_rec )conditional_expression (for_in_clause (identifier_rec) identifier_rec (identifier_records) identifier_records )for_in_clause )list_comprehension )assignment )expression_statement )block )if_statement (return_statement (identifier_records) identifier_records )return_statement )block )function_definition )module
Returns list of direct sub-records matching any tag name. Unlike :py:meth:`sub_tag` method this method does not support hierarchical paths and does not resolve pointers. :param str tags: Names of the sub-record tag :param kw: Keyword arguments, only recognized keyword is `follow` with the same meaning as in :py:meth:`sub_tag`. :return: List of `Records`, possibly empty.
(module (function_definition (function_name_createSQL) function_name_createSQL (parameters (identifier_self) identifier_self (identifier_sql) identifier_sql (default_parameter (identifier_args) identifier_args (tuple )tuple )default_parameter )parameters (block (expression_statement (assignment (identifier_before) identifier_before (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__execSQL) identifier__execSQL )attribute (argument_list (identifier_sql) identifier_sql (identifier_args) identifier_args )argument_list )call )expression_statement (expression_statement (assignment (identifier_after) identifier_after (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (binary_operator (identifier_after) identifier_after (identifier_before) identifier_before )binary_operator (float_2.0) float_2.0 )comparison_operator (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_msg) identifier_msg )attribute (argument_list (binary_operator (string_'Extremely long CREATE: %s') string_'Extremely long CREATE: %s' (tuple (binary_operator (identifier_after) identifier_after (identifier_before) identifier_before )binary_operator )tuple )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_log) identifier_log (identifier_msg) identifier_msg )attribute (argument_list (identifier_sql) identifier_sql )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
For use with auto-committing statements such as CREATE TABLE or CREATE INDEX.
(module (function_definition (function_name_get_dependants) function_name_get_dependants (parameters (identifier_project_name) identifier_project_name )parameters (block (for_statement (identifier_package) identifier_package (call (identifier_get_installed_distributions) identifier_get_installed_distributions (argument_list (keyword_argument (identifier_user_only) identifier_user_only (identifier_ENABLE_USER_SITE) identifier_ENABLE_USER_SITE )keyword_argument )argument_list )call (block (if_statement (call (identifier_is_dependant) identifier_is_dependant (argument_list (identifier_package) identifier_package (identifier_project_name) identifier_project_name )argument_list )call (block (expression_statement (yield (attribute (identifier_package) identifier_package (identifier_project_name) identifier_project_name )attribute )yield )expression_statement )block )if_statement )block )for_statement )block )function_definition )module
Yield dependants of `project_name`.
(module (function_definition (function_name_from_Suite) function_name_from_Suite (parameters (identifier_suite) identifier_suite (default_parameter (identifier_maxwidth) identifier_maxwidth (integer_80) integer_80 )default_parameter )parameters (block (expression_statement (assignment (identifier_subtitle) identifier_subtitle (conditional_expression (binary_operator (call (identifier_str) identifier_str (argument_list (call (identifier_len) identifier_len (argument_list (attribute (identifier_suite) identifier_suite (identifier_compositions) identifier_compositions )attribute )argument_list )call )argument_list )call (string_' Compositions') string_' Compositions' )binary_operator (comparison_operator (attribute (identifier_suite) identifier_suite (identifier_subtitle) identifier_subtitle )attribute (line_continuation_\) line_continuation_\ (string_'') string_'' )comparison_operator (attribute (identifier_suite) identifier_suite (identifier_subtitle) identifier_subtitle )attribute )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (attribute (attribute (identifier_os) identifier_os (identifier_linesep) identifier_linesep )attribute (identifier_join) identifier_join )attribute (argument_list (call (identifier_add_headers) identifier_add_headers (argument_list (identifier_maxwidth) identifier_maxwidth (attribute (identifier_suite) identifier_suite (identifier_title) identifier_title )attribute (identifier_subtitle) identifier_subtitle (attribute (identifier_suite) identifier_suite (identifier_author) identifier_author )attribute (attribute (identifier_suite) identifier_suite (identifier_email) identifier_email )attribute (attribute (identifier_suite) identifier_suite (identifier_description) identifier_description )attribute )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_hr) identifier_hr (binary_operator (identifier_maxwidth) identifier_maxwidth (string_'=') string_'=' )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_n) identifier_n (attribute (identifier_os) identifier_os (identifier_linesep) identifier_linesep )attribute )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (binary_operator (binary_operator (binary_operator (binary_operator (binary_operator (binary_operator (binary_operator (identifier_n) identifier_n (identifier_hr) identifier_hr )binary_operator (identifier_n) identifier_n )binary_operator (identifier_result) identifier_result )binary_operator (identifier_n) identifier_n )binary_operator (identifier_hr) identifier_hr )binary_operator (identifier_n) identifier_n )binary_operator (identifier_n) identifier_n )binary_operator )assignment )expression_statement (for_statement (identifier_comp) identifier_comp (identifier_suite) identifier_suite (block (expression_statement (assignment (identifier_c) identifier_c (call (identifier_from_Composition) identifier_from_Composition (argument_list (identifier_comp) identifier_comp (identifier_maxwidth) identifier_maxwidth )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_result) identifier_result (binary_operator (binary_operator (binary_operator (binary_operator (identifier_c) identifier_c (identifier_n) identifier_n )binary_operator (identifier_hr) identifier_hr )binary_operator (identifier_n) identifier_n )binary_operator (identifier_n) identifier_n )binary_operator )augmented_assignment )expression_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Convert a mingus.containers.Suite to an ASCII tablature string, complete with headers. This function makes use of the Suite's title, subtitle, author, email and description attributes.
(module (function_definition (function_name__create_trial_info) function_name__create_trial_info (parameters (identifier_self) identifier_self (identifier_expr_dir) identifier_expr_dir )parameters (block (expression_statement (assignment (identifier_meta) identifier_meta (call (attribute (identifier_self) identifier_self (identifier__build_trial_meta) identifier__build_trial_meta )attribute (argument_list (identifier_expr_dir) identifier_expr_dir )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute (identifier_debug) identifier_debug )attribute (argument_list (binary_operator (string_"Create trial for %s") string_"Create trial for %s" (identifier_meta) identifier_meta )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_trial_record) identifier_trial_record (call (attribute (identifier_TrialRecord) identifier_TrialRecord (identifier_from_json) identifier_from_json )attribute (argument_list (identifier_meta) identifier_meta )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_trial_record) identifier_trial_record (identifier_save) identifier_save )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Create information for given trial. Meta file will be loaded if exists, and the trial information will be saved in db backend. Args: expr_dir (str): Directory path of the experiment.
(module (function_definition (function_name_get_span_kind_as_int) function_name_get_span_kind_as_int (parameters (identifier_self) identifier_self (identifier_span) identifier_span )parameters (block (expression_statement (assignment (identifier_kind) identifier_kind (None) None )assignment )expression_statement (if_statement (comparison_operator (string_"span.kind") string_"span.kind" (attribute (identifier_span) identifier_span (identifier_tags) identifier_tags )attribute )comparison_operator (block (if_statement (comparison_operator (subscript (attribute (identifier_span) identifier_span (identifier_tags) identifier_tags )attribute (string_"span.kind") string_"span.kind" )subscript (attribute (identifier_self) identifier_self (identifier_entry_kind) identifier_entry_kind )attribute )comparison_operator (block (expression_statement (assignment (identifier_kind) identifier_kind (integer_1) integer_1 )assignment )expression_statement )block (elif_clause (comparison_operator (subscript (attribute (identifier_span) identifier_span (identifier_tags) identifier_tags )attribute (string_"span.kind") string_"span.kind" )subscript (attribute (identifier_self) identifier_self (identifier_exit_kind) identifier_exit_kind )attribute )comparison_operator (block (expression_statement (assignment (identifier_kind) identifier_kind (integer_2) integer_2 )assignment )expression_statement )block )elif_clause (else_clause (block (expression_statement (assignment (identifier_kind) identifier_kind (integer_3) integer_3 )assignment )expression_statement )block )else_clause )if_statement )block )if_statement (return_statement (identifier_kind) identifier_kind )return_statement )block )function_definition )module
Will retrieve the `span.kind` tag and return the appropriate integer value for the Instana backend or None if the tag is set to something we don't recognize. :param span: The span to search for the `span.kind` tag :return: Integer
(module (function_definition (function_name_render_filter) function_name_render_filter (parameters (identifier_self) identifier_self (identifier_next_filter) identifier_next_filter )parameters (block (expression_statement (call (identifier_next) identifier_next (argument_list (identifier_next_filter) identifier_next_filter )argument_list )call )expression_statement (while_statement (True) True (block (expression_statement (assignment (identifier_data) identifier_data (parenthesized_expression (yield )yield )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (list_comprehension (call (attribute (identifier_self) identifier_self (identifier_cell_format) identifier_cell_format )attribute (argument_list (call (identifier_access) identifier_access (argument_list (identifier_data) identifier_data )argument_list )call )argument_list )call (for_in_clause (identifier_access) identifier_access (attribute (identifier_self) identifier_self (identifier_accessors) identifier_accessors )attribute )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (call (attribute (identifier_next_filter) identifier_next_filter (identifier_send) identifier_send )attribute (argument_list (identifier_res) identifier_res )argument_list )call )expression_statement )block )while_statement )block )function_definition )module
Produce formatted output from the raw data stream.
(module (function_definition (function_name_spectrogram) function_name_spectrogram (parameters (identifier_t_signal) identifier_t_signal (default_parameter (identifier_frame_width) identifier_frame_width (identifier_FRAME_WIDTH) identifier_FRAME_WIDTH )default_parameter (default_parameter (identifier_overlap) identifier_overlap (identifier_FRAME_STRIDE) identifier_FRAME_STRIDE )default_parameter )parameters (block (expression_statement (assignment (identifier_frame_width) identifier_frame_width (call (identifier_min) identifier_min (argument_list (subscript (attribute (identifier_t_signal) identifier_t_signal (identifier_shape) identifier_shape )attribute (integer_0) integer_0 )subscript (identifier_frame_width) identifier_frame_width )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_w) identifier_w (call (attribute (identifier_np) identifier_np (identifier_hanning) identifier_hanning )attribute (argument_list (identifier_frame_width) identifier_frame_width )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_num_components) identifier_num_components (binary_operator (binary_operator (identifier_frame_width) identifier_frame_width (integer_2) integer_2 )binary_operator (integer_1) integer_1 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_num_frames) identifier_num_frames (binary_operator (integer_1) integer_1 (binary_operator (parenthesized_expression (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_t_signal) identifier_t_signal )argument_list )call (identifier_frame_width) identifier_frame_width )binary_operator )parenthesized_expression (identifier_overlap) identifier_overlap )binary_operator )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_f_signal) identifier_f_signal (call (attribute (identifier_np) identifier_np (identifier_empty) identifier_empty )attribute (argument_list (list (identifier_num_frames) identifier_num_frames (identifier_num_components) identifier_num_components )list (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_complex_) identifier_complex_ )attribute )keyword_argument )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_t) identifier_t )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (call (identifier_range) identifier_range (argument_list (integer_0) integer_0 (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_t_signal) identifier_t_signal )argument_list )call (identifier_frame_width) identifier_frame_width )binary_operator (identifier_overlap) identifier_overlap )argument_list )call )argument_list )call (block (expression_statement (assignment (subscript (identifier_f_signal) identifier_f_signal (identifier_i) identifier_i )subscript (call (identifier_rfft) identifier_rfft (argument_list (binary_operator (identifier_w) identifier_w (subscript (identifier_t_signal) identifier_t_signal (slice (identifier_t) identifier_t (colon) colon (binary_operator (identifier_t) identifier_t (identifier_frame_width) identifier_frame_width )binary_operator )slice )subscript )binary_operator )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (binary_operator (integer_20) integer_20 (call (attribute (identifier_np) identifier_np (identifier_log10) identifier_log10 )attribute (argument_list (binary_operator (integer_1) integer_1 (call (attribute (identifier_np) identifier_np (identifier_absolute) identifier_absolute )attribute (argument_list (identifier_f_signal) identifier_f_signal )argument_list )call )binary_operator )argument_list )call )binary_operator )return_statement )block )function_definition )module
Calculate the magnitude spectrogram of a single-channel time-domain signal from the real frequency components of the STFT with a hanning window applied to each frame. The frame size and overlap between frames should be specified in number of samples.
(module (function_definition (function_name_check_status_code) function_name_check_status_code (parameters (identifier_response) identifier_response (default_parameter (identifier_codes) identifier_codes (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_codes) identifier_codes (boolean_operator (identifier_codes) identifier_codes (list (integer_200) integer_200 )list )boolean_operator )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_response) identifier_response (identifier_status_code) identifier_status_code )attribute (identifier_codes) identifier_codes )comparison_operator (block (raise_statement (call (identifier_StatusCodeError) identifier_StatusCodeError (argument_list (attribute (identifier_response) identifier_response (identifier_status_code) identifier_status_code )attribute )argument_list )call )raise_statement )block )if_statement )block )function_definition )module
Checks response.status_code is in codes. :param requests.request response: Requests response :param list codes: List of accepted codes or callable :raises: StatusCodeError if code invalid
(module (function_definition (function_name_init_centers_widths) function_name_init_centers_widths (parameters (identifier_self) identifier_self (identifier_R) identifier_R )parameters (block (expression_statement (assignment (identifier_kmeans) identifier_kmeans (call (identifier_KMeans) identifier_KMeans (argument_list (keyword_argument (identifier_init) identifier_init (string_'k-means++') string_'k-means++' )keyword_argument (keyword_argument (identifier_n_clusters) identifier_n_clusters (attribute (identifier_self) identifier_self (identifier_K) identifier_K )attribute )keyword_argument (keyword_argument (identifier_n_init) identifier_n_init (integer_10) integer_10 )keyword_argument (keyword_argument (identifier_random_state) identifier_random_state (integer_100) integer_100 )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_kmeans) identifier_kmeans (identifier_fit) identifier_fit )attribute (argument_list (identifier_R) identifier_R )argument_list )call )expression_statement (expression_statement (assignment (identifier_centers) identifier_centers (attribute (identifier_kmeans) identifier_kmeans (identifier_cluster_centers_) identifier_cluster_centers_ )attribute )assignment )expression_statement (expression_statement (assignment (identifier_widths) identifier_widths (binary_operator (call (attribute (identifier_self) identifier_self (identifier__get_max_sigma) identifier__get_max_sigma )attribute (argument_list (identifier_R) identifier_R )argument_list )call (call (attribute (identifier_np) identifier_np (identifier_ones) identifier_ones )attribute (argument_list (tuple (attribute (identifier_self) identifier_self (identifier_K) identifier_K )attribute (integer_1) integer_1 )tuple )argument_list )call )binary_operator )assignment )expression_statement (return_statement (expression_list (identifier_centers) identifier_centers (identifier_widths) identifier_widths )expression_list )return_statement )block )function_definition )module
Initialize prior of centers and widths Returns ------- centers : 2D array, with shape [K, n_dim] Prior of factors' centers. widths : 1D array, with shape [K, 1] Prior of factors' widths.
(module (function_definition (function_name_recv_blocking) function_name_recv_blocking (parameters (identifier_conn) identifier_conn (identifier_msglen) identifier_msglen )parameters (block (expression_statement (assignment (identifier_msg) identifier_msg (string_b'') string_b'' )assignment )expression_statement (while_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_msg) identifier_msg )argument_list )call (identifier_msglen) identifier_msglen )comparison_operator (block (expression_statement (assignment (identifier_maxlen) identifier_maxlen (binary_operator (identifier_msglen) identifier_msglen (call (identifier_len) identifier_len (argument_list (identifier_msg) identifier_msg )argument_list )call )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_maxlen) identifier_maxlen (integer_4096) integer_4096 )comparison_operator (block (expression_statement (assignment (identifier_maxlen) identifier_maxlen (integer_4096) integer_4096 )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_tmpmsg) identifier_tmpmsg (call (attribute (identifier_conn) identifier_conn (identifier_recv) identifier_recv )attribute (argument_list (identifier_maxlen) identifier_maxlen )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_tmpmsg) identifier_tmpmsg )not_operator (block (raise_statement (call (identifier_RuntimeError) identifier_RuntimeError (argument_list (string_"socket connection broken") string_"socket connection broken" )argument_list )call )raise_statement )block )if_statement (expression_statement (augmented_assignment (identifier_msg) identifier_msg (identifier_tmpmsg) identifier_tmpmsg )augmented_assignment )expression_statement (expression_statement (call (attribute (identifier_logging) identifier_logging (identifier_debug) identifier_debug )attribute (argument_list (string_"Msglen: %d of %d") string_"Msglen: %d of %d" (call (identifier_len) identifier_len (argument_list (identifier_msg) identifier_msg )argument_list )call (identifier_msglen) identifier_msglen )argument_list )call )expression_statement )block )while_statement (expression_statement (call (attribute (identifier_logging) identifier_logging (identifier_debug) identifier_debug )attribute (argument_list (string_"Message: %s") string_"Message: %s" (identifier_msg) identifier_msg )argument_list )call )expression_statement (return_statement (identifier_msg) identifier_msg )return_statement )block )function_definition )module
Recieve data until msglen bytes have been received.
(module (function_definition (function_name_result) function_name_result (parameters (identifier_self) identifier_self (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter )parameters (block (if_statement (not_operator (call (attribute (call (attribute (identifier_self) identifier_self (identifier__poll) identifier__poll )attribute (argument_list (identifier_timeout) identifier_timeout )argument_list )call (identifier_HasField) identifier_HasField )attribute (argument_list (string_'response') string_'response' )argument_list )call )not_operator (block (raise_statement (call (identifier_GaxError) identifier_GaxError (argument_list (attribute (attribute (attribute (identifier_self) identifier_self (identifier__operation) identifier__operation )attribute (identifier_error) identifier_error )attribute (identifier_message) identifier_message )attribute )argument_list )call )raise_statement )block )if_statement (return_statement (call (identifier__from_any) identifier__from_any (argument_list (attribute (identifier_self) identifier_self (identifier__result_type) identifier__result_type )attribute (attribute (attribute (identifier_self) identifier_self (identifier__operation) identifier__operation )attribute (identifier_response) identifier_response )attribute )argument_list )call )return_statement )block )function_definition )module
Enters polling loop on OperationsClient.get_operation, and once Operation.done is true, then returns Operation.response if successful or throws GaxError if not successful. This method will wait up to timeout seconds. If the call hasn't completed in timeout seconds, then a RetryError will be raised. timeout can be an int or float. If timeout is not specified or None, there is no limit to the wait time.
(module (function_definition (function_name_list_active_vms) function_name_list_active_vms (parameters (default_parameter (identifier_cwd) identifier_cwd (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_vms) identifier_vms (list )list )assignment )expression_statement (expression_statement (assignment (identifier_cmd) identifier_cmd (string_'vagrant status') string_'vagrant status' )assignment )expression_statement (expression_statement (assignment (identifier_reply) identifier_reply (call (subscript (identifier___salt__) identifier___salt__ (string_'cmd.shell') string_'cmd.shell' )subscript (argument_list (identifier_cmd) identifier_cmd (keyword_argument (identifier_cwd) identifier_cwd (identifier_cwd) identifier_cwd )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_'--->\n%s') string_'--->\n%s' (identifier_reply) identifier_reply )argument_list )call )expression_statement (for_statement (identifier_line) identifier_line (call (attribute (identifier_reply) identifier_reply (identifier_split) identifier_split )attribute (argument_list (string_'\n') string_'\n' )argument_list )call (block (expression_statement (assignment (identifier_tokens) identifier_tokens (call (attribute (call (attribute (identifier_line) identifier_line (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call (identifier_split) identifier_split )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_tokens) identifier_tokens )argument_list )call (integer_1) integer_1 )comparison_operator (block (if_statement (comparison_operator (subscript (identifier_tokens) identifier_tokens (integer_1) integer_1 )subscript (string_'running') string_'running' )comparison_operator (block (expression_statement (call (attribute (identifier_vms) identifier_vms (identifier_append) identifier_append )attribute (argument_list (subscript (identifier_tokens) identifier_tokens (integer_0) integer_0 )subscript )argument_list )call )expression_statement )block )if_statement )block )if_statement )block )for_statement (return_statement (identifier_vms) identifier_vms )return_statement )block )function_definition )module
Return a list of machine names for active virtual machine on the host, which are defined in the Vagrantfile at the indicated path. CLI Example: .. code-block:: bash salt '*' vagrant.list_active_vms cwd=/projects/project_1
(module (function_definition (function_name_upload) function_name_upload (parameters (identifier_self) identifier_self (identifier_picture) identifier_picture (default_parameter (identifier_resize) identifier_resize (None) None )default_parameter (default_parameter (identifier_rotation) identifier_rotation (None) None )default_parameter (default_parameter (identifier_noexif) identifier_noexif (None) None )default_parameter (default_parameter (identifier_callback) identifier_callback (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_resize) identifier_resize )not_operator (block (expression_statement (assignment (identifier_resize) identifier_resize (attribute (identifier_self) identifier_self (identifier__resize) identifier__resize )attribute )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_rotation) identifier_rotation )not_operator (block (expression_statement (assignment (identifier_rotation) identifier_rotation (attribute (identifier_self) identifier_self (identifier__rotation) identifier__rotation )attribute )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_noexif) identifier_noexif )not_operator (block (expression_statement (assignment (identifier_noexif) identifier_noexif (attribute (identifier_self) identifier_self (identifier__noexif) identifier__noexif )attribute )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_callback) identifier_callback )not_operator (block (expression_statement (assignment (identifier_callback) identifier_callback (attribute (identifier_self) identifier_self (identifier__callback) identifier__callback )attribute )assignment )expression_statement )block )if_statement (return_statement (call (identifier_upload) identifier_upload (argument_list (attribute (identifier_self) identifier_self (identifier__apikey) identifier__apikey )attribute (identifier_picture) identifier_picture (identifier_resize) identifier_resize (identifier_rotation) identifier_rotation (identifier_noexif) identifier_noexif (identifier_callback) identifier_callback )argument_list )call )return_statement )block )function_definition )module
wraps upload function :param str/tuple/list picture: Path to picture as str or picture data. \ If data a tuple or list with the file name as str \ and data as byte object in that order. :param str resize: Aresolution in the folowing format: \ '80x80'(optional) :param str|degree rotation: The picture will be rotated by this Value.\ Allowed values are 00, 90, 180, 270.(optional) :param boolean noexif: set to True when exif data should be purged.\ (optional) :param function callback: function will be called after every read. \ Need to take one argument. you can use the len function to \ determine the body length and call bytes_read().
(module (function_definition (function_name_replace_entity_resource) function_name_replace_entity_resource (parameters (identifier_model) identifier_model (identifier_oldres) identifier_oldres (identifier_newres) identifier_newres )parameters (block (expression_statement (assignment (identifier_oldrids) identifier_oldrids (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_rid) identifier_rid (identifier_link) identifier_link )pattern_list (identifier_model) identifier_model (block (if_statement (boolean_operator (boolean_operator (comparison_operator (subscript (identifier_link) identifier_link (identifier_ORIGIN) identifier_ORIGIN )subscript (identifier_oldres) identifier_oldres )comparison_operator (comparison_operator (subscript (identifier_link) identifier_link (identifier_TARGET) identifier_TARGET )subscript (identifier_oldres) identifier_oldres )comparison_operator )boolean_operator (comparison_operator (identifier_oldres) identifier_oldres (call (attribute (subscript (identifier_link) identifier_link (identifier_ATTRIBUTES) identifier_ATTRIBUTES )subscript (identifier_values) identifier_values )attribute (argument_list )argument_list )call )comparison_operator )boolean_operator (block (expression_statement (call (attribute (identifier_oldrids) identifier_oldrids (identifier_add) identifier_add )attribute (argument_list (identifier_rid) identifier_rid )argument_list )call )expression_statement (expression_statement (assignment (identifier_new_link) identifier_new_link (tuple (conditional_expression (identifier_newres) identifier_newres (comparison_operator (identifier_o) identifier_o (identifier_oldres) identifier_oldres )comparison_operator (identifier_o) identifier_o )conditional_expression (identifier_r) identifier_r (conditional_expression (identifier_newres) identifier_newres (comparison_operator (identifier_t) identifier_t (identifier_oldres) identifier_oldres )comparison_operator (identifier_t) identifier_t )conditional_expression (call (identifier_dict) identifier_dict (generator_expression (tuple (identifier_k) identifier_k (conditional_expression (identifier_newres) identifier_newres (comparison_operator (identifier_v) identifier_v (identifier_oldres) identifier_oldres )comparison_operator (identifier_v) identifier_v )conditional_expression )tuple (for_in_clause (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (identifier_a) identifier_a (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause )generator_expression )call )tuple )assignment )expression_statement (expression_statement (call (attribute (identifier_model) identifier_model (identifier_add) identifier_add )attribute (argument_list (list_splat (identifier_new_link) identifier_new_link )list_splat )argument_list )call )expression_statement )block )if_statement )block )for_statement (expression_statement (call (attribute (identifier_model) identifier_model (identifier_delete) identifier_delete )attribute (argument_list (identifier_oldrids) identifier_oldrids )argument_list )call )expression_statement (return_statement )return_statement )block )function_definition )module
Replace one entity in the model with another with the same links :param model: Versa model to be updated :param oldres: old/former resource IRI to be replaced :param newres: new/replacement resource IRI :return: None
(module (function_definition (function_name_check_compatibility) function_name_check_compatibility (parameters (identifier_self) identifier_self (identifier_other) identifier_other (default_parameter (identifier_check_edges) identifier_check_edges (False) False )default_parameter (default_parameter (identifier_precision) identifier_precision (float_1E-7) float_1E-7 )default_parameter )parameters (block (if_statement (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_GetDimension) identifier_GetDimension )attribute (argument_list )argument_list )call (call (attribute (identifier_other) identifier_other (identifier_GetDimension) identifier_GetDimension )attribute (argument_list )argument_list )call )comparison_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (string_"histogram dimensionalities do not match") string_"histogram dimensionalities do not match" )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_self) identifier_self )argument_list )call (call (identifier_len) identifier_len (argument_list (identifier_other) identifier_other )argument_list )call )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_"histogram sizes do not match") string_"histogram sizes do not match" )argument_list )call )raise_statement )block )if_statement (for_statement (identifier_axis) identifier_axis (call (identifier_range) identifier_range (argument_list (call (attribute (identifier_self) identifier_self (identifier_GetDimension) identifier_GetDimension )attribute (argument_list )argument_list )call )argument_list )call (block (if_statement (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_nbins) identifier_nbins )attribute (argument_list (keyword_argument (identifier_axis) identifier_axis (identifier_axis) identifier_axis )keyword_argument )argument_list )call (call (attribute (identifier_other) identifier_other (identifier_nbins) identifier_nbins )attribute (argument_list (keyword_argument (identifier_axis) identifier_axis (identifier_axis) identifier_axis )keyword_argument )argument_list )call )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"numbers of bins along axis {0:d} do not match") string_"numbers of bins along axis {0:d} do not match" (identifier_format) identifier_format )attribute (argument_list (identifier_axis) identifier_axis )argument_list )call )argument_list )call )raise_statement )block )if_statement )block )for_statement (if_statement (identifier_check_edges) identifier_check_edges (block (for_statement (identifier_axis) identifier_axis (call (identifier_range) identifier_range (argument_list (call (attribute (identifier_self) identifier_self (identifier_GetDimension) identifier_GetDimension )attribute (argument_list )argument_list )call )argument_list )call (block (if_statement (not_operator (call (identifier_all) identifier_all (argument_list (list_comprehension (comparison_operator (call (identifier_abs) identifier_abs (argument_list (binary_operator (identifier_l) identifier_l (identifier_r) identifier_r )binary_operator )argument_list )call (identifier_precision) identifier_precision )comparison_operator (for_in_clause (pattern_list (identifier_l) identifier_l (identifier_r) identifier_r )pattern_list (call (identifier_zip) identifier_zip (argument_list (call (attribute (identifier_self) identifier_self (identifier__edges) identifier__edges )attribute (argument_list (identifier_axis) identifier_axis )argument_list )call (call (attribute (identifier_other) identifier_other (identifier__edges) identifier__edges )attribute (argument_list (identifier_axis) identifier_axis )argument_list )call )argument_list )call )for_in_clause )list_comprehension )argument_list )call )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"edges do not match along axis {0:d}") string_"edges do not match along axis {0:d}" (identifier_format) identifier_format )attribute (argument_list (identifier_axis) identifier_axis )argument_list )call )argument_list )call )raise_statement )block )if_statement )block )for_statement )block )if_statement )block )function_definition )module
Test whether two histograms are considered compatible by the number of dimensions, number of bins along each axis, and optionally the bin edges. Parameters ---------- other : histogram A rootpy histogram check_edges : bool, optional (default=False) If True then also check that the bin edges are equal within the specified precision. precision : float, optional (default=1E-7) The value below which differences between floats are treated as nil when comparing bin edges. Raises ------ TypeError If the histogram dimensionalities do not match ValueError If the histogram sizes, number of bins along an axis, or optionally the bin edges do not match
(module (function_definition (function_name_get_single_file_info) function_name_get_single_file_info (parameters (identifier_self) identifier_self (identifier_rel_path) identifier_rel_path )parameters (block (expression_statement (assignment (identifier_f_path) identifier_f_path (call (attribute (identifier_self) identifier_self (identifier_get_full_file_path) identifier_get_full_file_path )attribute (argument_list (identifier_rel_path) identifier_rel_path )argument_list )call )assignment )expression_statement (return_statement (call (identifier_get_single_file_info) identifier_get_single_file_info (argument_list (identifier_f_path) identifier_f_path (identifier_rel_path) identifier_rel_path )argument_list )call )return_statement )block )function_definition )module
Gets last change time for a single file
(module (function_definition (function_name_fetch_objects) function_name_fetch_objects (parameters (identifier_self) identifier_self (identifier_oids) identifier_oids )parameters (block (expression_statement (assignment (identifier_objects) identifier_objects (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_model) identifier_model )attribute (identifier_objects) identifier_objects )attribute (identifier_in_bulk) identifier_in_bulk )attribute (argument_list (identifier_oids) identifier_oids )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (call (attribute (identifier_objects) identifier_objects (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call (call (identifier_len) identifier_len (argument_list (identifier_oids) identifier_oids )argument_list )call )comparison_operator (block (expression_statement (assignment (identifier_non_existants) identifier_non_existants (binary_operator (call (identifier_set) identifier_set (argument_list (identifier_oids) identifier_oids )argument_list )call (call (identifier_set) identifier_set (argument_list (call (attribute (identifier_objects) identifier_objects (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_msg) identifier_msg (call (attribute (call (identifier__) identifier__ (argument_list (string_'Unknown identifiers: {identifiers}') string_'Unknown identifiers: {identifiers}' )argument_list )call (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_identifiers) identifier_identifiers (call (attribute (string_', ') string_', ' (identifier_join) identifier_join )attribute (generator_expression (call (identifier_str) identifier_str (argument_list (identifier_ne) identifier_ne )argument_list )call (for_in_clause (identifier_ne) identifier_ne (identifier_non_existants) identifier_non_existants )for_in_clause )generator_expression )call )keyword_argument )argument_list )call )assignment )expression_statement (raise_statement (call (attribute (identifier_validators) identifier_validators (identifier_ValidationError) identifier_ValidationError )attribute (argument_list (identifier_msg) identifier_msg )argument_list )call )raise_statement )block )if_statement (return_statement (list_comprehension (subscript (identifier_objects) identifier_objects (identifier_id) identifier_id )subscript (for_in_clause (identifier_id) identifier_id (identifier_oids) identifier_oids )for_in_clause )list_comprehension )return_statement )block )function_definition )module
This methods is used to fetch models from a list of identifiers. Default implementation performs a bulk query on identifiers. Override this method to customize the objects retrieval.
(module (function_definition (function_name_set_file_path) function_name_set_file_path (parameters (identifier_self) identifier_self (identifier_filePath) identifier_filePath )parameters (block (if_statement (comparison_operator (identifier_filePath) identifier_filePath (None) None )comparison_operator (block (assert_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_filePath) identifier_filePath (identifier_basestring) identifier_basestring )argument_list )call (string_"filePath must be None or string") string_"filePath must be None or string" )assert_statement (expression_statement (assignment (identifier_filePath) identifier_filePath (call (identifier_str) identifier_str (argument_list (identifier_filePath) identifier_filePath )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier___filePath) identifier___filePath )attribute (identifier_filePath) identifier_filePath )assignment )expression_statement )block )function_definition )module
Set the file path that needs to be locked. :Parameters: #. filePath (None, path): The file that needs to be locked. When given and a lock is acquired, the file will be automatically opened for writing or reading depending on the given mode. If None is given, the locker can always be used for its general purpose as shown in the examples.
(module (function_definition (function_name_generate_cutD_genomic_CDR3_segs) function_name_generate_cutD_genomic_CDR3_segs (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_max_palindrome_L) identifier_max_palindrome_L (attribute (identifier_self) identifier_self (identifier_max_delDl_palindrome) identifier_max_delDl_palindrome )attribute )assignment )expression_statement (expression_statement (assignment (identifier_max_palindrome_R) identifier_max_palindrome_R (attribute (identifier_self) identifier_self (identifier_max_delDr_palindrome) identifier_max_delDr_palindrome )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_cutD_genomic_CDR3_segs) identifier_cutD_genomic_CDR3_segs )attribute (list )list )assignment )expression_statement (for_statement (identifier_CDR3_D_seg) identifier_CDR3_D_seg (list_comprehension (subscript (identifier_x) identifier_x (integer_1) integer_1 )subscript (for_in_clause (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier_genD) identifier_genD )attribute )for_in_clause )list_comprehension (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_CDR3_D_seg) identifier_CDR3_D_seg )argument_list )call (call (identifier_min) identifier_min (argument_list (identifier_max_palindrome_L) identifier_max_palindrome_L (identifier_max_palindrome_R) identifier_max_palindrome_R )argument_list )call )comparison_operator (block (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier_cutD_genomic_CDR3_segs) identifier_cutD_genomic_CDR3_segs )attribute (list (call (identifier_cutR_seq) identifier_cutR_seq (argument_list (call (identifier_cutL_seq) identifier_cutL_seq (argument_list (identifier_CDR3_D_seg) identifier_CDR3_D_seg (integer_0) integer_0 (call (identifier_len) identifier_len (argument_list (identifier_CDR3_D_seg) identifier_CDR3_D_seg )argument_list )call )argument_list )call (integer_0) integer_0 (call (identifier_len) identifier_len (argument_list (identifier_CDR3_D_seg) identifier_CDR3_D_seg )argument_list )call )argument_list )call )list )augmented_assignment )expression_statement )block (else_clause (block (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier_cutD_genomic_CDR3_segs) identifier_cutD_genomic_CDR3_segs )attribute (list (call (identifier_cutR_seq) identifier_cutR_seq (argument_list (call (identifier_cutL_seq) identifier_cutL_seq (argument_list (identifier_CDR3_D_seg) identifier_CDR3_D_seg (integer_0) integer_0 (identifier_max_palindrome_L) identifier_max_palindrome_L )argument_list )call (integer_0) integer_0 (identifier_max_palindrome_R) identifier_max_palindrome_R )argument_list )call )list )augmented_assignment )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Add palindromic inserted nucleotides to germline V sequences. The maximum number of palindromic insertions are appended to the germline D segments so that delDl and delDr can index directly for number of nucleotides to delete from a segment. Sets the attribute cutV_genomic_CDR3_segs.
(module (function_definition (function_name_get_secondary_count) function_name_get_secondary_count (parameters (identifier_context) identifier_context (default_parameter (identifier_default) identifier_default (integer_0) integer_0 )default_parameter )parameters (block (if_statement (not_operator (call (identifier_is_ar) identifier_is_ar (argument_list (identifier_context) identifier_context )argument_list )call )not_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (expression_statement (assignment (identifier_primary) identifier_primary (call (attribute (identifier_context) identifier_context (identifier_getPrimaryAnalysisRequest) identifier_getPrimaryAnalysisRequest )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_primary) identifier_primary )not_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (return_statement (call (identifier_len) identifier_len (argument_list (call (attribute (identifier_primary) identifier_primary (identifier_getSecondaryAnalysisRequests) identifier_getSecondaryAnalysisRequests )attribute (argument_list )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Returns the number of secondary ARs of this AR
(module (function_definition (function_name_pad_to_size) function_name_pad_to_size (parameters (identifier_data) identifier_data (identifier_shape) identifier_shape (default_parameter (identifier_value) identifier_value (float_0.0) float_0.0 )default_parameter )parameters (block (expression_statement (assignment (identifier_shape) identifier_shape (list_comprehension (conditional_expression (subscript (attribute (identifier_data) identifier_data (identifier_shape) identifier_shape )attribute (identifier_i) identifier_i )subscript (comparison_operator (subscript (identifier_shape) identifier_shape (identifier_i) identifier_i )subscript (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator (subscript (identifier_shape) identifier_shape (identifier_i) identifier_i )subscript )conditional_expression (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (call (identifier_len) identifier_len (argument_list (identifier_shape) identifier_shape )argument_list )call )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_new_data) identifier_new_data (call (attribute (identifier_np) identifier_np (identifier_empty) identifier_empty )attribute (argument_list (identifier_shape) identifier_shape )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_new_data) identifier_new_data (slice (colon) colon )slice )subscript (identifier_value) identifier_value )assignment )expression_statement (expression_statement (assignment (identifier_II) identifier_II (list_comprehension (call (identifier_slice) identifier_slice (argument_list (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_shape) identifier_shape (identifier_i) identifier_i )subscript (subscript (attribute (identifier_data) identifier_data (identifier_shape) identifier_shape )attribute (identifier_i) identifier_i )subscript )binary_operator )parenthesized_expression (integer_2) integer_2 )binary_operator (binary_operator (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_shape) identifier_shape (identifier_i) identifier_i )subscript (subscript (attribute (identifier_data) identifier_data (identifier_shape) identifier_shape )attribute (identifier_i) identifier_i )subscript )binary_operator )parenthesized_expression (integer_2) integer_2 )binary_operator (subscript (attribute (identifier_data) identifier_data (identifier_shape) identifier_shape )attribute (identifier_i) identifier_i )subscript )binary_operator )argument_list )call (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (call (identifier_len) identifier_len (argument_list (identifier_shape) identifier_shape )argument_list )call )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (subscript (identifier_new_data) identifier_new_data (identifier_II) identifier_II )subscript (identifier_data) identifier_data )assignment )expression_statement (return_statement (identifier_new_data) identifier_new_data )return_statement )block )function_definition )module
This is similar to `pad`, except you specify the final shape of the array. Parameters ---------- data : ndarray Numpy array of any dimension and type. shape : tuple Final shape of padded array. Should be tuple of length ``data.ndim``. If it has to pad unevenly, it will pad one more at the end of the axis than at the beginning. If a dimension is specified as ``-1``, then it will remain its current size along that dimension. value : data.dtype The value with which to pad. Default is ``0.0``. This can even be an array, as long as ``pdata[:] = value`` is valid, where ``pdata`` is the size of the padded array. Examples -------- >>> import deepdish as dd >>> import numpy as np Pad an array with zeros. >>> x = np.ones((4, 2)) >>> dd.util.pad_to_size(x, (5, 5)) array([[ 0., 1., 1., 0., 0.], [ 0., 1., 1., 0., 0.], [ 0., 1., 1., 0., 0.], [ 0., 1., 1., 0., 0.], [ 0., 0., 0., 0., 0.]])
(module (function_definition (function_name__finalize_memory) function_name__finalize_memory (parameters (identifier_jvm_opts) identifier_jvm_opts )parameters (block (expression_statement (assignment (identifier_avoid_min) identifier_avoid_min (integer_32) integer_32 )assignment )expression_statement (expression_statement (assignment (identifier_avoid_max) identifier_avoid_max (integer_48) integer_48 )assignment )expression_statement (expression_statement (assignment (identifier_out_opts) identifier_out_opts (list )list )assignment )expression_statement (for_statement (identifier_opt) identifier_opt (identifier_jvm_opts) identifier_jvm_opts (block (if_statement (call (attribute (identifier_opt) identifier_opt (identifier_startswith) identifier_startswith )attribute (argument_list (string_"-Xmx") string_"-Xmx" )argument_list )call (block (expression_statement (assignment (identifier_spec) identifier_spec (subscript (identifier_opt) identifier_opt (slice (integer_4) integer_4 (colon) colon )slice )subscript )assignment )expression_statement (expression_statement (assignment (identifier_val) identifier_val (call (identifier_int) identifier_int (argument_list (subscript (identifier_spec) identifier_spec (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_mod) identifier_mod (subscript (identifier_spec) identifier_spec (unary_operator (integer_1) integer_1 )unary_operator )subscript )assignment )expression_statement (if_statement (comparison_operator (call (attribute (identifier_mod) identifier_mod (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (string_"M") string_"M" )comparison_operator (block (expression_statement (assignment (identifier_adjust) identifier_adjust (integer_1024) integer_1024 )assignment )expression_statement (expression_statement (assignment (identifier_min_val) identifier_min_val (binary_operator (identifier_avoid_min) identifier_avoid_min (integer_1024) integer_1024 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_max_val) identifier_max_val (binary_operator (identifier_avoid_max) identifier_avoid_max (integer_1024) integer_1024 )binary_operator )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_adjust) identifier_adjust (integer_1) integer_1 )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_min_val) identifier_min_val (identifier_max_val) identifier_max_val )pattern_list (expression_list (identifier_avoid_min) identifier_avoid_min (identifier_avoid_max) identifier_avoid_max )expression_list )assignment )expression_statement )block )else_clause )if_statement (if_statement (boolean_operator (comparison_operator (identifier_val) identifier_val (identifier_min_val) identifier_min_val )comparison_operator (comparison_operator (identifier_val) identifier_val (identifier_max_val) identifier_max_val )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_val) identifier_val (binary_operator (identifier_min_val) identifier_min_val (identifier_adjust) identifier_adjust )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_opt) identifier_opt (binary_operator (string_"%s%s%s") string_"%s%s%s" (tuple (subscript (identifier_opt) identifier_opt (slice (colon) colon (integer_4) integer_4 )slice )subscript (identifier_val) identifier_val (identifier_mod) identifier_mod )tuple )binary_operator )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_out_opts) identifier_out_opts (identifier_append) identifier_append )attribute (argument_list (identifier_opt) identifier_opt )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_out_opts) identifier_out_opts )return_statement )block )function_definition )module
GRIDSS does not recommend setting memory between 32 and 48Gb. https://github.com/PapenfussLab/gridss#memory-usage
(module (function_definition (function_name_CreateTask) function_name_CreateTask (parameters (identifier_self) identifier_self (identifier_session_identifier) identifier_session_identifier )parameters (block (expression_statement (assignment (identifier_task) identifier_task (call (attribute (identifier_tasks) identifier_tasks (identifier_Task) identifier_Task )attribute (argument_list (identifier_session_identifier) identifier_session_identifier )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_debug) identifier_debug )attribute (argument_list (call (attribute (string_'Created task: {0:s}.') string_'Created task: {0:s}.' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_task) identifier_task (identifier_identifier) identifier_identifier )attribute )argument_list )call )argument_list )call )expression_statement (with_statement (with_clause (with_item (attribute (identifier_self) identifier_self (identifier__lock) identifier__lock )attribute )with_item )with_clause (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__tasks_queued) identifier__tasks_queued )attribute (attribute (identifier_task) identifier_task (identifier_identifier) identifier_identifier )attribute )subscript (identifier_task) identifier_task )assignment )expression_statement (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier__total_number_of_tasks) identifier__total_number_of_tasks )attribute (integer_1) integer_1 )augmented_assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_SampleTaskStatus) identifier_SampleTaskStatus )attribute (argument_list (identifier_task) identifier_task (string_'created') string_'created' )argument_list )call )expression_statement )block )with_statement (return_statement (identifier_task) identifier_task )return_statement )block )function_definition )module
Creates a task. Args: session_identifier (str): the identifier of the session the task is part of. Returns: Task: task attribute container.
(module (function_definition (function_name_Runs) function_name_Runs (parameters (identifier_self) identifier_self )parameters (block (with_statement (with_clause (with_item (attribute (identifier_self) identifier_self (identifier__accumulators_mutex) identifier__accumulators_mutex )attribute )with_item )with_clause (block (expression_statement (assignment (identifier_items) identifier_items (call (identifier_list) identifier_list (argument_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__accumulators) identifier__accumulators )attribute )argument_list )call )argument_list )call )assignment )expression_statement )block )with_statement (return_statement (dictionary_comprehension (pair (identifier_run_name) identifier_run_name (call (attribute (identifier_accumulator) identifier_accumulator (identifier_Tags) identifier_Tags )attribute (argument_list )argument_list )call )pair (for_in_clause (pattern_list (identifier_run_name) identifier_run_name (identifier_accumulator) identifier_accumulator )pattern_list (identifier_items) identifier_items )for_in_clause )dictionary_comprehension )return_statement )block )function_definition )module
Return all the run names in the `EventMultiplexer`. Returns: ``` {runName: { scalarValues: [tagA, tagB, tagC], graph: true, meta_graph: true}} ```
(module (function_definition (function_name_write_sampler_metadata) function_name_write_sampler_metadata (parameters (identifier_self) identifier_self (identifier_sampler) identifier_sampler )parameters (block (expression_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_MultiTemperedMetadataIO) identifier_MultiTemperedMetadataIO (identifier_self) identifier_self )argument_list )call (identifier_write_sampler_metadata) identifier_write_sampler_metadata )attribute (argument_list (identifier_sampler) identifier_sampler )argument_list )call )expression_statement (expression_statement (assignment (subscript (attribute (subscript (identifier_self) identifier_self (attribute (identifier_self) identifier_self (identifier_sampler_group) identifier_sampler_group )attribute )subscript (identifier_attrs) identifier_attrs )attribute (string_"ntemps") string_"ntemps" )subscript (attribute (identifier_sampler) identifier_sampler (identifier_ntemps) identifier_ntemps )attribute )assignment )expression_statement )block )function_definition )module
Adds writing ntemps to file.
(module (function_definition (function_name_permissions) function_name_permissions (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_can_read) identifier_can_read (binary_operator (attribute (attribute (attribute (identifier_self) identifier_self (identifier__info) identifier__info )attribute (identifier_file) identifier_file )attribute (identifier_permissions) identifier_permissions )attribute (attribute (identifier_lib) identifier_lib (identifier_GP_FILE_PERM_READ) identifier_GP_FILE_PERM_READ )attribute )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_can_write) identifier_can_write (binary_operator (attribute (attribute (attribute (identifier_self) identifier_self (identifier__info) identifier__info )attribute (identifier_file) identifier_file )attribute (identifier_permissions) identifier_permissions )attribute (attribute (identifier_lib) identifier_lib (identifier_GP_FILE_PERM_DELETE) identifier_GP_FILE_PERM_DELETE )attribute )binary_operator )assignment )expression_statement (return_statement (call (attribute (string_"{0}{1}") string_"{0}{1}" (identifier_format) identifier_format )attribute (argument_list (conditional_expression (string_"r") string_"r" (identifier_can_read) identifier_can_read (string_"-") string_"-" )conditional_expression (conditional_expression (string_"w") string_"w" (identifier_can_write) identifier_can_write (string_"-") string_"-" )conditional_expression )argument_list )call )return_statement )block )function_definition )module
Permissions of the file. Can be "r-" (read-only), "-w" (write-only), "rw" (read-write) or "--" (no rights). :rtype: str
(module (function_definition (function_name_scan_django_settings) function_name_scan_django_settings (parameters (identifier_values) identifier_values (identifier_imports) identifier_imports )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_values) identifier_values (tuple (identifier_str) identifier_str (identifier_bytes) identifier_bytes )tuple )argument_list )call (block (if_statement (call (attribute (identifier_utils) identifier_utils (identifier_is_import_str) identifier_is_import_str )attribute (argument_list (identifier_values) identifier_values )argument_list )call (block (expression_statement (call (attribute (identifier_imports) identifier_imports (identifier_add) identifier_add )attribute (argument_list (identifier_values) identifier_values )argument_list )call )expression_statement )block )if_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_values) identifier_values (identifier_dict) identifier_dict )argument_list )call (block (for_statement (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (attribute (identifier_values) identifier_values (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (call (identifier_scan_django_settings) identifier_scan_django_settings (argument_list (identifier_k) identifier_k (identifier_imports) identifier_imports )argument_list )call )expression_statement (expression_statement (call (identifier_scan_django_settings) identifier_scan_django_settings (argument_list (identifier_v) identifier_v (identifier_imports) identifier_imports )argument_list )call )expression_statement )block )for_statement )block )elif_clause (elif_clause (boolean_operator (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_values) identifier_values (string_'__file__') string_'__file__' )argument_list )call (call (identifier_getattr) identifier_getattr (argument_list (identifier_values) identifier_values (string_'__file__') string_'__file__' )argument_list )call )boolean_operator (block (expression_statement (assignment (pattern_list (identifier_imp) identifier_imp (identifier__) identifier__ )pattern_list (call (attribute (identifier_utils) identifier_utils (identifier_import_path_from_file) identifier_import_path_from_file )attribute (argument_list (call (identifier_getattr) identifier_getattr (argument_list (identifier_values) identifier_values (string_'__file__') string_'__file__' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_imports) identifier_imports (identifier_add) identifier_add )attribute (argument_list (identifier_imp) identifier_imp )argument_list )call )expression_statement )block )elif_clause (elif_clause (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_values) identifier_values (string_'__iter__') string_'__iter__' )argument_list )call (block (for_statement (identifier_item) identifier_item (identifier_values) identifier_values (block (expression_statement (call (identifier_scan_django_settings) identifier_scan_django_settings (argument_list (identifier_item) identifier_item (identifier_imports) identifier_imports )argument_list )call )expression_statement )block )for_statement )block )elif_clause )if_statement )block )function_definition )module
Recursively scans Django settings for values that appear to be imported modules.
(module (function_definition (function_name__readline) function_name__readline (parameters (identifier_sock) identifier_sock (identifier_buf) identifier_buf )parameters (block (expression_statement (assignment (identifier_chunks) identifier_chunks (list )list )assignment )expression_statement (expression_statement (assignment (identifier_last_char) identifier_last_char (string_b'') string_b'' )assignment )expression_statement (while_statement (True) True (block (if_statement (boolean_operator (comparison_operator (identifier_last_char) identifier_last_char (string_b'\r') string_b'\r' )comparison_operator (comparison_operator (subscript (identifier_buf) identifier_buf (slice (integer_0) integer_0 (colon) colon (integer_1) integer_1 )slice )subscript (string_b'\n') string_b'\n' )comparison_operator )boolean_operator (block (expression_statement (assignment (subscript (identifier_chunks) identifier_chunks (unary_operator (integer_1) integer_1 )unary_operator )subscript (subscript (subscript (identifier_chunks) identifier_chunks (unary_operator (integer_1) integer_1 )unary_operator )subscript (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )assignment )expression_statement (return_statement (expression_list (subscript (identifier_buf) identifier_buf (slice (integer_1) integer_1 (colon) colon )slice )subscript (call (attribute (string_b'') string_b'' (identifier_join) identifier_join )attribute (argument_list (identifier_chunks) identifier_chunks )argument_list )call )expression_list )return_statement )block (elif_clause (comparison_operator (call (attribute (identifier_buf) identifier_buf (identifier_find) identifier_find )attribute (argument_list (string_b'\r\n') string_b'\r\n' )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator (block (expression_statement (assignment (pattern_list (identifier_before) identifier_before (identifier_sep) identifier_sep (identifier_after) identifier_after )pattern_list (call (attribute (identifier_buf) identifier_buf (identifier_partition) identifier_partition )attribute (argument_list (string_b"\r\n") string_b"\r\n" )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_chunks) identifier_chunks (identifier_append) identifier_append )attribute (argument_list (identifier_before) identifier_before )argument_list )call )expression_statement (return_statement (expression_list (identifier_after) identifier_after (call (attribute (string_b'') string_b'' (identifier_join) identifier_join )attribute (argument_list (identifier_chunks) identifier_chunks )argument_list )call )expression_list )return_statement )block )elif_clause )if_statement (if_statement (identifier_buf) identifier_buf (block (expression_statement (call (attribute (identifier_chunks) identifier_chunks (identifier_append) identifier_append )attribute (argument_list (identifier_buf) identifier_buf )argument_list )call )expression_statement (expression_statement (assignment (identifier_last_char) identifier_last_char (subscript (identifier_buf) identifier_buf (slice (unary_operator (integer_1) integer_1 )unary_operator (colon) colon )slice )subscript )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_buf) identifier_buf (call (identifier__recv) identifier__recv (argument_list (identifier_sock) identifier_sock (identifier_RECV_SIZE) identifier_RECV_SIZE )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_buf) identifier_buf )not_operator (block (raise_statement (call (identifier_MemcacheUnexpectedCloseError) identifier_MemcacheUnexpectedCloseError (argument_list )argument_list )call )raise_statement )block )if_statement )block )while_statement )block )function_definition )module
Read line of text from the socket. Read a line of text (delimited by "\r\n") from the socket, and return that line along with any trailing characters read from the socket. Args: sock: Socket object, should be connected. buf: String, zero or more characters, returned from an earlier call to _readline or _readvalue (pass an empty string on the first call). Returns: A tuple of (buf, line) where line is the full line read from the socket (minus the "\r\n" characters) and buf is any trailing characters read after the "\r\n" was found (which may be an empty string).
(module (function_definition (function_name_parameter_action) function_name_parameter_action (parameters (identifier_self) identifier_self (identifier_text) identifier_text (identifier_loc) identifier_loc (identifier_par) identifier_par )parameters (block (expression_statement (call (attribute (identifier_exshared) identifier_exshared (identifier_setpos) identifier_setpos )attribute (argument_list (identifier_loc) identifier_loc (identifier_text) identifier_text )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_DEBUG) identifier_DEBUG (integer_0) integer_0 )comparison_operator (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"PARAM:") string_"PARAM:" (identifier_par) identifier_par )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_DEBUG) identifier_DEBUG (integer_2) integer_2 )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_symtab) identifier_symtab )attribute (identifier_display) identifier_display )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_DEBUG) identifier_DEBUG (integer_2) integer_2 )comparison_operator (block (return_statement )return_statement )block )if_statement )block )if_statement (expression_statement (assignment (identifier_index) identifier_index (call (attribute (attribute (identifier_self) identifier_self (identifier_symtab) identifier_symtab )attribute (identifier_insert_parameter) identifier_insert_parameter )attribute (argument_list (attribute (identifier_par) identifier_par (identifier_name) identifier_name )attribute (attribute (identifier_par) identifier_par (identifier_type) identifier_type )attribute )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (attribute (attribute (identifier_self) identifier_self (identifier_shared) identifier_shared )attribute (identifier_function_params) identifier_function_params )attribute (integer_1) integer_1 )augmented_assignment )expression_statement (return_statement (identifier_index) identifier_index )return_statement )block )function_definition )module
Code executed after recognising a parameter
(module (function_definition (function_name_median) function_name_median (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier__is_transposed) identifier__is_transposed )attribute (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_"axis") string_"axis" )subscript (binary_operator (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_"axis") string_"axis" (integer_0) integer_0 )argument_list )call (integer_1) integer_1 )binary_operator )assignment )expression_statement (return_statement (call (attribute (call (attribute (identifier_self) identifier_self (identifier_transpose) identifier_transpose )attribute (argument_list )argument_list )call (identifier_median) identifier_median )attribute (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )if_statement (expression_statement (assignment (identifier_axis) identifier_axis (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_"axis") string_"axis" (integer_0) integer_0 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_func) identifier_func (call (attribute (identifier_self) identifier_self (identifier__build_mapreduce_func) identifier__build_mapreduce_func )attribute (argument_list (attribute (attribute (identifier_pandas) identifier_pandas (identifier_DataFrame) identifier_DataFrame )attribute (identifier_median) identifier_median )attribute (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__full_axis_reduce) identifier__full_axis_reduce )attribute (argument_list (identifier_axis) identifier_axis (identifier_func) identifier_func )argument_list )call )return_statement )block )function_definition )module
Returns median of each column or row. Returns: A new QueryCompiler object containing the median of each column or row.
(module (function_definition (function_name_pollNextEvent) function_name_pollNextEvent (parameters (identifier_self) identifier_self (identifier_pEvent) identifier_pEvent )parameters (block (expression_statement (assignment (identifier_fn) identifier_fn (attribute (attribute (identifier_self) identifier_self (identifier_function_table) identifier_function_table )attribute (identifier_pollNextEvent) identifier_pollNextEvent )attribute )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (identifier_fn) identifier_fn (argument_list (call (identifier_byref) identifier_byref (argument_list (identifier_pEvent) identifier_pEvent )argument_list )call (call (identifier_sizeof) identifier_sizeof (argument_list (identifier_VREvent_t) identifier_VREvent_t )argument_list )call )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (identifier_result) identifier_result (integer_0) integer_0 )comparison_operator )return_statement )block )function_definition )module
Returns true and fills the event with the next event on the queue if there is one. If there are no events this method returns false. uncbVREvent should be the size in bytes of the VREvent_t struct
(module (function_definition (function_name_filter) function_name_filter (parameters (identifier_self) identifier_self (default_parameter (identifier_displayed) identifier_displayed (False) False )default_parameter (default_parameter (identifier_enabled) identifier_enabled (False) False )default_parameter )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_evaluated) identifier_evaluated )attribute (block (expression_statement (assignment (identifier_result) identifier_result (identifier_self) identifier_self )assignment )expression_statement (if_statement (identifier_displayed) identifier_displayed (block (expression_statement (assignment (identifier_result) identifier_result (call (identifier_ElementSelector) identifier_ElementSelector (argument_list (attribute (identifier_result) identifier_result (identifier_browser) identifier_browser )attribute (keyword_argument (identifier_elements) identifier_elements (list_comprehension (identifier_e) identifier_e (for_in_clause (identifier_e) identifier_e (identifier_result) identifier_result )for_in_clause (if_clause (call (attribute (identifier_e) identifier_e (identifier_is_displayed) identifier_is_displayed )attribute (argument_list )argument_list )call )if_clause )list_comprehension )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (identifier_enabled) identifier_enabled (block (expression_statement (assignment (identifier_result) identifier_result (call (identifier_ElementSelector) identifier_ElementSelector (argument_list (attribute (identifier_result) identifier_result (identifier_browser) identifier_browser )attribute (keyword_argument (identifier_elements) identifier_elements (list_comprehension (identifier_e) identifier_e (for_in_clause (identifier_e) identifier_e (identifier_result) identifier_result )for_in_clause (if_clause (call (attribute (identifier_e) identifier_e (identifier_is_enabled) identifier_is_enabled )attribute (argument_list )argument_list )call )if_clause )list_comprehension )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement )block (else_clause (block (expression_statement (assignment (identifier_result) identifier_result (call (identifier_copy) identifier_copy (argument_list (identifier_self) identifier_self )argument_list )call )assignment )expression_statement (if_statement (identifier_displayed) identifier_displayed (block (expression_statement (assignment (attribute (identifier_result) identifier_result (identifier_displayed) identifier_displayed )attribute (True) True )assignment )expression_statement )block )if_statement (if_statement (identifier_enabled) identifier_enabled (block (expression_statement (assignment (attribute (identifier_result) identifier_result (identifier_enabled) identifier_enabled )attribute (True) True )assignment )expression_statement )block )if_statement )block )else_clause )if_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Filter elements by visibility and enabled status. :param displayed: whether to filter out invisible elements :param enabled: whether to filter out disabled elements Returns: an :class:`ElementSelector`
(module (function_definition (function_name_update) function_name_update (parameters (identifier_self) identifier_self (default_parameter (identifier_friendly_name) identifier_friendly_name (None) None )default_parameter (default_parameter (identifier_description) identifier_description (None) None )default_parameter (default_parameter (identifier_query) identifier_query (None) None )default_parameter )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__table) identifier__table )attribute (identifier__load_info) identifier__load_info )attribute (argument_list )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_query) identifier_query (None) None )comparison_operator (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_query) identifier_query (attribute (identifier__query) identifier__query (identifier_Query) identifier_Query )attribute )argument_list )call (block (expression_statement (assignment (identifier_query) identifier_query (attribute (identifier_query) identifier_query (identifier_sql) identifier_sql )attribute )assignment )expression_statement )block )if_statement (expression_statement (assignment (subscript (attribute (attribute (identifier_self) identifier_self (identifier__table) identifier__table )attribute (identifier__info) identifier__info )attribute (string_'view') string_'view' )subscript (dictionary (pair (string_'query') string_'query' (identifier_query) identifier_query )pair )dictionary )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__table) identifier__table )attribute (identifier_update) identifier_update )attribute (argument_list (keyword_argument (identifier_friendly_name) identifier_friendly_name (identifier_friendly_name) identifier_friendly_name )keyword_argument (keyword_argument (identifier_description) identifier_description (identifier_description) identifier_description )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Selectively updates View information. Any parameters that are None (the default) are not applied in the update. Args: friendly_name: if not None, the new friendly name. description: if not None, the new description. query: if not None, a new query string for the View.
(module (function_definition (function_name_loc_to_index) function_name_loc_to_index (parameters (identifier_self) identifier_self (identifier_loc) identifier_loc )parameters (block (if_statement (comparison_operator (identifier_loc) identifier_loc (None) None )comparison_operator (block (return_statement (attribute (identifier_self) identifier_self (identifier__active_renderer_index) identifier__active_renderer_index )attribute )return_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_loc) identifier_loc (identifier_int) identifier_int )argument_list )call (block (return_statement (identifier_loc) identifier_loc )return_statement )block )elif_clause (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_loc) identifier_loc (attribute (identifier_collections) identifier_collections (identifier_Iterable) identifier_Iterable )attribute )argument_list )call (block (assert_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_loc) identifier_loc )argument_list )call (integer_2) integer_2 )comparison_operator (string_'"loc" must contain two items') string_'"loc" must contain two items' )assert_statement (return_statement (binary_operator (binary_operator (subscript (identifier_loc) identifier_loc (integer_0) integer_0 )subscript (subscript (attribute (identifier_self) identifier_self (identifier_shape) identifier_shape )attribute (integer_0) integer_0 )subscript )binary_operator (subscript (identifier_loc) identifier_loc (integer_1) integer_1 )subscript )binary_operator )return_statement )block )elif_clause )if_statement )block )function_definition )module
Return index of the render window given a location index. Parameters ---------- loc : int, tuple, or list Index of the renderer to add the actor to. For example, ``loc=2`` or ``loc=(1, 1)``. Returns ------- idx : int Index of the render window.
(module (function_definition (function_name_patch_func) function_name_patch_func (parameters (identifier_replacement) identifier_replacement (identifier_target_mod) identifier_target_mod (identifier_func_name) identifier_func_name )parameters (block (expression_statement (assignment (identifier_original) identifier_original (call (identifier_getattr) identifier_getattr (argument_list (identifier_target_mod) identifier_target_mod (identifier_func_name) identifier_func_name )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (call (identifier_vars) identifier_vars (argument_list (identifier_replacement) identifier_replacement )argument_list )call (identifier_setdefault) identifier_setdefault )attribute (argument_list (string_'unpatched') string_'unpatched' (identifier_original) identifier_original )argument_list )call )expression_statement (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_target_mod) identifier_target_mod (identifier_func_name) identifier_func_name (identifier_replacement) identifier_replacement )argument_list )call )expression_statement )block )function_definition )module
Patch func_name in target_mod with replacement Important - original must be resolved by name to avoid patching an already patched function.
(module (function_definition (function_name_delete_project) function_name_delete_project (parameters (identifier_self) identifier_self (identifier_id) identifier_id )parameters (block (expression_statement (assignment (identifier_url) identifier_url (call (attribute (string_'/projects/{id}') string_'/projects/{id}' (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_id) identifier_id (identifier_id) identifier_id )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_self) identifier_self (identifier_delete) identifier_delete )attribute (argument_list (identifier_url) identifier_url )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_response) identifier_response (True) True )comparison_operator (block (return_statement (dictionary )dictionary )return_statement )block (else_clause (block (return_statement (identifier_response) identifier_response )return_statement )block )else_clause )if_statement )block )function_definition )module
Delete a project from the Gitlab server Gitlab currently returns a Boolean True if the deleted and as such we return an empty Dictionary :param id: The ID of the project or NAMESPACE/PROJECT_NAME :return: Dictionary :raise: HttpError: If invalid response returned
(module (function_definition (function_name_update_parameters) function_name_update_parameters (parameters (identifier_parameters) identifier_parameters (identifier_grads) identifier_grads (default_parameter (identifier_learning_rate) identifier_learning_rate (float_1.2) float_1.2 )default_parameter )parameters (block (expression_statement (assignment (identifier_W1) identifier_W1 (subscript (identifier_parameters) identifier_parameters (string_"W1") string_"W1" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_b1) identifier_b1 (subscript (identifier_parameters) identifier_parameters (string_"b1") string_"b1" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_W2) identifier_W2 (subscript (identifier_parameters) identifier_parameters (string_"W2") string_"W2" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_b2) identifier_b2 (subscript (identifier_parameters) identifier_parameters (string_"b2") string_"b2" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_dW1) identifier_dW1 (subscript (identifier_grads) identifier_grads (string_"dW1") string_"dW1" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_db1) identifier_db1 (subscript (identifier_grads) identifier_grads (string_"db1") string_"db1" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_dW2) identifier_dW2 (subscript (identifier_grads) identifier_grads (string_"dW2") string_"dW2" )subscript )assignment )expression_statement (expression_statement (assignment (identifier_db2) identifier_db2 (subscript (identifier_grads) identifier_grads (string_"db2") string_"db2" )subscript )assignment )expression_statement (expression_statement (augmented_assignment (identifier_W1) identifier_W1 (binary_operator (identifier_learning_rate) identifier_learning_rate (identifier_dW1) identifier_dW1 )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_b1) identifier_b1 (binary_operator (identifier_learning_rate) identifier_learning_rate (identifier_db1) identifier_db1 )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_W2) identifier_W2 (binary_operator (identifier_learning_rate) identifier_learning_rate (identifier_dW2) identifier_dW2 )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_b2) identifier_b2 (binary_operator (identifier_learning_rate) identifier_learning_rate (identifier_db2) identifier_db2 )binary_operator )augmented_assignment )expression_statement (expression_statement (assignment (identifier_parameters) identifier_parameters (dictionary (pair (string_"W1") string_"W1" (identifier_W1) identifier_W1 )pair (pair (string_"b1") string_"b1" (identifier_b1) identifier_b1 )pair (pair (string_"W2") string_"W2" (identifier_W2) identifier_W2 )pair (pair (string_"b2") string_"b2" (identifier_b2) identifier_b2 )pair )dictionary )assignment )expression_statement (return_statement (identifier_parameters) identifier_parameters )return_statement )block )function_definition )module
Updates parameters using the gradient descent update rule given above Arguments: parameters -- python dictionary containing your parameters grads -- python dictionary containing your gradients Returns: parameters -- python dictionary containing your updated parameters
(module (function_definition (function_name__areadist) function_name__areadist (parameters (identifier_ax) identifier_ax (identifier_v) identifier_v (identifier_xr) identifier_xr (identifier_c) identifier_c (default_parameter (identifier_bins) identifier_bins (integer_100) integer_100 )default_parameter (default_parameter (identifier_by) identifier_by (None) None )default_parameter (default_parameter (identifier_alpha) identifier_alpha (integer_1) integer_1 )default_parameter (default_parameter (identifier_label) identifier_label (None) None )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_y) identifier_y (identifier_x) identifier_x )pattern_list (call (attribute (identifier_np) identifier_np (identifier_histogram) identifier_histogram )attribute (argument_list (subscript (identifier_v) identifier_v (unary_operator (call (attribute (identifier_np) identifier_np (identifier_isnan) identifier_isnan )attribute (argument_list (identifier_v) identifier_v )argument_list )call )unary_operator )subscript (identifier_bins) identifier_bins )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_x) identifier_x (subscript (identifier_x) identifier_x (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )assignment )expression_statement (if_statement (comparison_operator (identifier_by) identifier_by (None) None )comparison_operator (block (expression_statement (assignment (identifier_by) identifier_by (call (attribute (identifier_np) identifier_np (identifier_zeros) identifier_zeros )attribute (argument_list (tuple (identifier_bins) identifier_bins )tuple )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_ax) identifier_ax (identifier_fill_between) identifier_fill_between )attribute (argument_list (identifier_x) identifier_x (identifier_y) identifier_y (identifier_by) identifier_by (keyword_argument (identifier_facecolor) identifier_facecolor (identifier_c) identifier_c )keyword_argument (keyword_argument (identifier_alpha) identifier_alpha (identifier_alpha) identifier_alpha )keyword_argument (keyword_argument (identifier_label) identifier_label (identifier_label) identifier_label )keyword_argument )argument_list )call )expression_statement (return_statement (identifier_y) identifier_y )return_statement )block )function_definition )module
Plot the histogram distribution but as an area plot
(module (function_definition (function_name_entity) function_name_entity (parameters (identifier_self) identifier_self (identifier_entity_type) identifier_entity_type (default_parameter (identifier_identifier) identifier_identifier (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_entity) identifier_entity (call (identifier__ACLEntity) identifier__ACLEntity (argument_list (keyword_argument (identifier_entity_type) identifier_entity_type (identifier_entity_type) identifier_entity_type )keyword_argument (keyword_argument (identifier_identifier) identifier_identifier (identifier_identifier) identifier_identifier )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_self) identifier_self (identifier_has_entity) identifier_has_entity )attribute (argument_list (identifier_entity) identifier_entity )argument_list )call (block (expression_statement (assignment (identifier_entity) identifier_entity (call (attribute (identifier_self) identifier_self (identifier_get_entity) identifier_get_entity )attribute (argument_list (identifier_entity) identifier_entity )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_entity) identifier_add_entity )attribute (argument_list (identifier_entity) identifier_entity )argument_list )call )expression_statement )block )else_clause )if_statement (return_statement (identifier_entity) identifier_entity )return_statement )block )function_definition )module
Factory method for creating an Entity. If an entity with the same type and identifier already exists, this will return a reference to that entity. If not, it will create a new one and add it to the list of known entities for this ACL. :type entity_type: str :param entity_type: The type of entity to create (ie, ``user``, ``group``, etc) :type identifier: str :param identifier: The ID of the entity (if applicable). This can be either an ID or an e-mail address. :rtype: :class:`_ACLEntity` :returns: A new Entity or a reference to an existing identical entity.
(module (function_definition (function_name_download_object) function_name_download_object (parameters (identifier_container_name) identifier_container_name (identifier_object_name) identifier_object_name (identifier_destination_path) identifier_destination_path (identifier_profile) identifier_profile (default_parameter (identifier_overwrite_existing) identifier_overwrite_existing (False) False )default_parameter (default_parameter (identifier_delete_on_failure) identifier_delete_on_failure (True) True )default_parameter (dictionary_splat_pattern (identifier_libcloud_kwargs) identifier_libcloud_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_conn) identifier_conn (call (identifier__get_driver) identifier__get_driver (argument_list (keyword_argument (identifier_profile) identifier_profile (identifier_profile) identifier_profile )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_obj) identifier_obj (call (attribute (identifier_conn) identifier_conn (identifier_get_object) identifier_get_object )attribute (argument_list (identifier_container_name) identifier_container_name (identifier_object_name) identifier_object_name )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_libcloud_kwargs) identifier_libcloud_kwargs (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_args) identifier_args )attribute (identifier_clean_kwargs) identifier_clean_kwargs )attribute (argument_list (dictionary_splat (identifier_libcloud_kwargs) identifier_libcloud_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_conn) identifier_conn (identifier_download_object) identifier_download_object )attribute (argument_list (identifier_obj) identifier_obj (identifier_destination_path) identifier_destination_path (identifier_overwrite_existing) identifier_overwrite_existing (identifier_delete_on_failure) identifier_delete_on_failure (dictionary_splat (identifier_libcloud_kwargs) identifier_libcloud_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Download an object to the specified destination path. :param container_name: Container name :type container_name: ``str`` :param object_name: Object name :type object_name: ``str`` :param destination_path: Full path to a file or a directory where the incoming file will be saved. :type destination_path: ``str`` :param profile: The profile key :type profile: ``str`` :param overwrite_existing: True to overwrite an existing file, defaults to False. :type overwrite_existing: ``bool`` :param delete_on_failure: True to delete a partially downloaded file if the download was not successful (hash mismatch / file size). :type delete_on_failure: ``bool`` :param libcloud_kwargs: Extra arguments for the driver's download_object method :type libcloud_kwargs: ``dict`` :return: True if an object has been successfully downloaded, False otherwise. :rtype: ``bool`` CLI Example: .. code-block:: bash salt myminion libcloud_storage.download_object MyFolder me.jpg /tmp/me.jpg profile1
(module (function_definition (function_name_best_hits) function_name_best_hits (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_quality_sort) identifier_quality_sort )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_best_hits) identifier_best_hits (call (identifier_dict) identifier_dict (generator_expression (tuple (identifier_query) identifier_query (call (identifier_next) identifier_next (argument_list (identifier_blines) identifier_blines )argument_list )call )tuple (for_in_clause (tuple_pattern (identifier_query) identifier_query (identifier_blines) identifier_blines )tuple_pattern (line_continuation_\) line_continuation_\ (call (identifier_groupby) identifier_groupby (argument_list (identifier_self) identifier_self (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (attribute (identifier_x) identifier_x (identifier_query) identifier_query )attribute )lambda )argument_list )call )for_in_clause )generator_expression )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_ref_sort) identifier_ref_sort )attribute (argument_list )argument_list )call )expression_statement (return_statement (identifier_best_hits) identifier_best_hits )return_statement )block )function_definition )module
returns a dict with query => best mapped position
(module (function_definition (function_name_hlog_inv) function_name_hlog_inv (parameters (identifier_y) identifier_y (default_parameter (identifier_b) identifier_b (integer_500) integer_500 )default_parameter (default_parameter (identifier_r) identifier_r (identifier__display_max) identifier__display_max )default_parameter (default_parameter (identifier_d) identifier_d (identifier__l_mmax) identifier__l_mmax )default_parameter )parameters (block (expression_statement (assignment (identifier_aux) identifier_aux (binary_operator (binary_operator (binary_operator (float_1.) float_1. (identifier_d) identifier_d )binary_operator (identifier_r) identifier_r )binary_operator (identifier_y) identifier_y )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (identifier_sign) identifier_sign (argument_list (identifier_y) identifier_y )argument_list )call )assignment )expression_statement (if_statement (attribute (identifier_s) identifier_s (identifier_shape) identifier_shape )attribute (block (expression_statement (assignment (subscript (identifier_s) identifier_s (comparison_operator (identifier_s) identifier_s (integer_0) integer_0 )comparison_operator )subscript (integer_1) integer_1 )assignment )expression_statement )block (elif_clause (comparison_operator (identifier_s) identifier_s (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (identifier_s) identifier_s (integer_1) integer_1 )assignment )expression_statement )block )elif_clause )if_statement (return_statement (binary_operator (binary_operator (binary_operator (identifier_s) identifier_s (binary_operator (integer_10) integer_10 (parenthesized_expression (binary_operator (identifier_s) identifier_s (identifier_aux) identifier_aux )binary_operator )parenthesized_expression )binary_operator )binary_operator (binary_operator (identifier_b) identifier_b (identifier_aux) identifier_aux )binary_operator )binary_operator (identifier_s) identifier_s )binary_operator )return_statement )block )function_definition )module
Inverse of base 10 hyperlog transform.
(module (function_definition (function_name_generate_tags_multiple_files) function_name_generate_tags_multiple_files (parameters (identifier_input_files) identifier_input_files (identifier_tag) identifier_tag (identifier_ignore_tags) identifier_ignore_tags (default_parameter (identifier_ns) identifier_ns (None) None )default_parameter )parameters (block (return_statement (call (attribute (attribute (identifier_itertools) identifier_itertools (identifier_chain) identifier_chain )attribute (identifier_from_iterable) identifier_from_iterable )attribute (argument_list (list_comprehension (call (identifier_generate_xmltags) identifier_generate_xmltags (argument_list (identifier_fn) identifier_fn (identifier_tag) identifier_tag (identifier_ignore_tags) identifier_ignore_tags (identifier_ns) identifier_ns )argument_list )call (for_in_clause (identifier_fn) identifier_fn (identifier_input_files) identifier_input_files )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
Calls xmltag generator for multiple files.
(module (function_definition (function_name_parse_function) function_name_parse_function (parameters (identifier_fn) identifier_fn )parameters (block (try_statement (block (return_statement (call (identifier_parse_string) identifier_parse_string (argument_list (call (attribute (identifier_inspect) identifier_inspect (identifier_getsource) identifier_getsource )attribute (argument_list (identifier_fn) identifier_fn )argument_list )call )argument_list )call )return_statement )block (except_clause (as_pattern (tuple (identifier_IOError) identifier_IOError (identifier_OSError) identifier_OSError )tuple (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (concatenated_string (string_'Cannot differentiate function: %s. Tangent must be able to access the ') string_'Cannot differentiate function: %s. Tangent must be able to access the ' (string_'source code of the function. Functions defined in a Python ') string_'source code of the function. Functions defined in a Python ' (string_'interpreter and functions backed by C extension modules do not ') string_'interpreter and functions backed by C extension modules do not ' (string_'have accessible source code.') string_'have accessible source code.' )concatenated_string (identifier_e) identifier_e )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
Get the source of a function and return its AST.
(module (function_definition (function_name_get_crawldelay) function_name_get_crawldelay (parameters (identifier_self) identifier_self (identifier_useragent) identifier_useragent )parameters (block (for_statement (identifier_entry) identifier_entry (attribute (identifier_self) identifier_self (identifier_entries) identifier_entries )attribute (block (if_statement (call (attribute (identifier_entry) identifier_entry (identifier_applies_to) identifier_applies_to )attribute (argument_list (identifier_useragent) identifier_useragent )argument_list )call (block (return_statement (attribute (identifier_entry) identifier_entry (identifier_crawldelay) identifier_crawldelay )attribute )return_statement )block )if_statement )block )for_statement (return_statement (integer_0) integer_0 )return_statement )block )function_definition )module
Look for a configured crawl delay. @return: crawl delay in seconds or zero @rtype: integer >= 0
(module (function_definition (function_name_parse) function_name_parse (parameters (typed_default_parameter (identifier_args) identifier_args (type (subscript (attribute (identifier_typing) identifier_typing (identifier_List) identifier_List )attribute (identifier_str) identifier_str )subscript )type (None) None )typed_default_parameter (typed_default_parameter (identifier_arg_parser) identifier_arg_parser (type (identifier_ArgumentParser) identifier_ArgumentParser )type (None) None )typed_default_parameter )parameters (type (identifier_dict) identifier_dict )type (block (expression_statement (assignment (identifier_parser) identifier_parser (boolean_operator (identifier_arg_parser) identifier_arg_parser (call (identifier_create_parser) identifier_create_parser (argument_list )argument_list )call )boolean_operator )assignment )expression_statement (return_statement (call (identifier_vars) identifier_vars (argument_list (call (attribute (identifier_parser) identifier_parser (identifier_parse_args) identifier_parse_args )attribute (argument_list (identifier_args) identifier_args )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Parses the arguments for the cauldron server
(module (function_definition (function_name__remove_dots) function_name__remove_dots (parameters (identifier_src) identifier_src )parameters (block (expression_statement (assignment (identifier_output) identifier_output (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_key) identifier_key (identifier_val) identifier_val )pattern_list (call (attribute (identifier_six) identifier_six (identifier_iteritems) identifier_iteritems )attribute (argument_list (identifier_src) identifier_src )argument_list )call (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_val) identifier_val (identifier_dict) identifier_dict )argument_list )call (block (expression_statement (assignment (identifier_val) identifier_val (call (identifier__remove_dots) identifier__remove_dots (argument_list (identifier_val) identifier_val )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (subscript (identifier_output) identifier_output (call (attribute (identifier_key) identifier_key (identifier_replace) identifier_replace )attribute (argument_list (string_'.') string_'.' (string_'-') string_'-' )argument_list )call )subscript (identifier_val) identifier_val )assignment )expression_statement )block )for_statement (return_statement (identifier_output) identifier_output )return_statement )block )function_definition )module
Remove dots from the given data structure
(module (function_definition (function_name_save) function_name_save (parameters (identifier_self) identifier_self (identifier_f) identifier_f )parameters (block (return_statement (call (attribute (identifier_pickle) identifier_pickle (identifier_dump) identifier_dump )attribute (argument_list (tuple (attribute (attribute (identifier_self) identifier_self (identifier_perceptron) identifier_perceptron )attribute (identifier_weights) identifier_weights )attribute (attribute (identifier_self) identifier_self (identifier_tagdict) identifier_tagdict )attribute (attribute (identifier_self) identifier_self (identifier_classes) identifier_classes )attribute (attribute (identifier_self) identifier_self (identifier_clusters) identifier_clusters )attribute )tuple (identifier_f) identifier_f (keyword_argument (identifier_protocol) identifier_protocol (attribute (identifier_pickle) identifier_pickle (identifier_HIGHEST_PROTOCOL) identifier_HIGHEST_PROTOCOL )attribute )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Save pickled model to file.
(module (function_definition (function_name_ae_core_density) function_name_ae_core_density (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (pattern_list (identifier_mesh) identifier_mesh (identifier_values) identifier_values (identifier_attrib) identifier_attrib )pattern_list (call (attribute (identifier_self) identifier_self (identifier__parse_radfunc) identifier__parse_radfunc )attribute (argument_list (string_"ae_core_density") string_"ae_core_density" )argument_list )call )assignment )expression_statement (return_statement (call (identifier_RadialFunction) identifier_RadialFunction (argument_list (identifier_mesh) identifier_mesh (identifier_values) identifier_values )argument_list )call )return_statement )block )function_definition )module
The all-electron radial density.
(module (function_definition (function_name_content) function_name_content (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_args) identifier_args )dictionary_splat_pattern )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_gist_name) identifier_gist_name )attribute (string_'') string_'' )assignment )expression_statement (if_statement (comparison_operator (string_'name') string_'name' (identifier_args) identifier_args )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_gist_name) identifier_gist_name )attribute (subscript (identifier_args) identifier_args (string_'name') string_'name' )subscript )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_gist_id) identifier_gist_id )attribute (call (attribute (identifier_self) identifier_self (identifier_getMyID) identifier_getMyID )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_gist_name) identifier_gist_name )attribute )argument_list )call )assignment )expression_statement )block (elif_clause (comparison_operator (string_'id') string_'id' (identifier_args) identifier_args )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_gist_id) identifier_gist_id )attribute (subscript (identifier_args) identifier_args (string_'id') string_'id' )subscript )assignment )expression_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_'Either provide authenticated user\'s Unambigious Gistname or any unique Gistid') string_'Either provide authenticated user\'s Unambigious Gistname or any unique Gistid' )argument_list )call )raise_statement )block )else_clause )if_statement (if_statement (attribute (identifier_self) identifier_self (identifier_gist_id) identifier_gist_id )attribute (block (expression_statement (assignment (identifier_r) identifier_r (call (attribute (identifier_requests) identifier_requests (identifier_get) identifier_get )attribute (argument_list (binary_operator (binary_operator (string_'%s') string_'%s' (identifier_BASE_URL) identifier_BASE_URL )binary_operator (binary_operator (string_'/gists/%s') string_'/gists/%s' (attribute (identifier_self) identifier_self (identifier_gist_id) identifier_gist_id )attribute )binary_operator )binary_operator (keyword_argument (identifier_headers) identifier_headers (attribute (attribute (identifier_self) identifier_self (identifier_gist) identifier_gist )attribute (identifier_header) identifier_header )attribute )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (parenthesized_expression (comparison_operator (attribute (identifier_r) identifier_r (identifier_status_code) identifier_status_code )attribute (integer_200) integer_200 )comparison_operator )parenthesized_expression (block (expression_statement (assignment (identifier_r_text) identifier_r_text (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (attribute (identifier_r) identifier_r (identifier_text) identifier_text )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_gist_name) identifier_gist_name )attribute (string_'') string_'' )comparison_operator (block (expression_statement (assignment (identifier_content) identifier_content (subscript (subscript (subscript (call (attribute (identifier_r) identifier_r (identifier_json) identifier_json )attribute (argument_list )argument_list )call (string_'files') string_'files' )subscript (attribute (identifier_self) identifier_self (identifier_gist_name) identifier_gist_name )attribute )subscript (string_'content') string_'content' )subscript )assignment )expression_statement )block (else_clause (block (for_statement (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (attribute (subscript (call (attribute (identifier_r) identifier_r (identifier_json) identifier_json )attribute (argument_list )argument_list )call (string_'files') string_'files' )subscript (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_content) identifier_content (subscript (subscript (subscript (call (attribute (identifier_r) identifier_r (identifier_json) identifier_json )attribute (argument_list )argument_list )call (string_'files') string_'files' )subscript (subscript (identifier_value) identifier_value (string_'filename') string_'filename' )subscript )subscript (string_'content') string_'content' )subscript )assignment )expression_statement )block )for_statement )block )else_clause )if_statement (return_statement (identifier_content) identifier_content )return_statement )block )if_statement )block )if_statement (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_'No such gist found') string_'No such gist found' )argument_list )call )raise_statement )block )function_definition )module
Doesn't require manual fetching of gistID of a gist passing gistName will return the content of gist. In case, names are ambigious, provide GistID or it will return the contents of recent ambigious gistname
(module (function_definition (function_name_render_pdf_file_to_image_files) function_name_render_pdf_file_to_image_files (parameters (identifier_pdf_file_name) identifier_pdf_file_name (identifier_output_filename_root) identifier_output_filename_root (identifier_program_to_use) identifier_program_to_use )parameters (block (expression_statement (assignment (identifier_res_x) identifier_res_x (call (identifier_str) identifier_str (argument_list (attribute (identifier_args) identifier_args (identifier_resX) identifier_resX )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_res_y) identifier_res_y (call (identifier_str) identifier_str (argument_list (attribute (identifier_args) identifier_args (identifier_resY) identifier_resY )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_program_to_use) identifier_program_to_use (string_"Ghostscript") string_"Ghostscript" )comparison_operator (block (if_statement (comparison_operator (attribute (identifier_ex) identifier_ex (identifier_system_os) identifier_system_os )attribute (string_"Windows") string_"Windows" )comparison_operator (block (expression_statement (call (attribute (identifier_ex) identifier_ex (identifier_render_pdf_file_to_image_files__ghostscript_bmp) identifier_render_pdf_file_to_image_files__ghostscript_bmp )attribute (argument_list (identifier_pdf_file_name) identifier_pdf_file_name (identifier_output_filename_root) identifier_output_filename_root (identifier_res_x) identifier_res_x (identifier_res_y) identifier_res_y )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_ex) identifier_ex (identifier_render_pdf_file_to_image_files__ghostscript_png) identifier_render_pdf_file_to_image_files__ghostscript_png )attribute (argument_list (identifier_pdf_file_name) identifier_pdf_file_name (identifier_output_filename_root) identifier_output_filename_root (identifier_res_x) identifier_res_x (identifier_res_y) identifier_res_y )argument_list )call )expression_statement )block )else_clause )if_statement )block (elif_clause (comparison_operator (identifier_program_to_use) identifier_program_to_use (string_"pdftoppm") string_"pdftoppm" )comparison_operator (block (expression_statement (assignment (identifier_use_gray) identifier_use_gray (False) False )assignment )expression_statement (if_statement (identifier_use_gray) identifier_use_gray (block (expression_statement (call (attribute (identifier_ex) identifier_ex (identifier_render_pdf_file_to_image_files_pdftoppm_pgm) identifier_render_pdf_file_to_image_files_pdftoppm_pgm )attribute (argument_list (identifier_pdf_file_name) identifier_pdf_file_name (identifier_output_filename_root) identifier_output_filename_root (identifier_res_x) identifier_res_x (identifier_res_y) identifier_res_y )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_ex) identifier_ex (identifier_render_pdf_file_to_image_files_pdftoppm_ppm) identifier_render_pdf_file_to_image_files_pdftoppm_ppm )attribute (argument_list (identifier_pdf_file_name) identifier_pdf_file_name (identifier_output_filename_root) identifier_output_filename_root (identifier_res_x) identifier_res_x (identifier_res_y) identifier_res_y )argument_list )call )expression_statement )block )else_clause )if_statement )block )elif_clause (else_clause (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"Error in renderPdfFileToImageFile: Unrecognized external program.") string_"Error in renderPdfFileToImageFile: Unrecognized external program." (keyword_argument (identifier_file) identifier_file (attribute (identifier_sys) identifier_sys (identifier_stderr) identifier_stderr )attribute )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_ex) identifier_ex (identifier_cleanup_and_exit) identifier_cleanup_and_exit )attribute (argument_list (integer_1) integer_1 )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Render all the pages of the PDF file at pdf_file_name to image files with path and filename prefix given by output_filename_root. Any directories must have already been created, and the calling program is responsible for deleting any directories or image files. The program program_to_use, currently either the string "pdftoppm" or the string "Ghostscript", will be called externally. The image type that the PDF is converted into must to be directly openable by PIL.
(module (function_definition (function_name__calc_b) function_name__calc_b (parameters (identifier_w) identifier_w (identifier_aod700) identifier_aod700 )parameters (block (expression_statement (assignment (identifier_b1) identifier_b1 (binary_operator (binary_operator (binary_operator (float_0.00925) float_0.00925 (binary_operator (identifier_aod700) identifier_aod700 (integer_2) integer_2 )binary_operator )binary_operator (binary_operator (float_0.0148) float_0.0148 (identifier_aod700) identifier_aod700 )binary_operator )binary_operator (float_0.0172) float_0.0172 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_b0) identifier_b0 (binary_operator (binary_operator (binary_operator (unary_operator (float_0.7565) float_0.7565 )unary_operator (binary_operator (identifier_aod700) identifier_aod700 (integer_2) integer_2 )binary_operator )binary_operator (binary_operator (float_0.5057) float_0.5057 (identifier_aod700) identifier_aod700 )binary_operator )binary_operator (float_0.4557) float_0.4557 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_b) identifier_b (binary_operator (binary_operator (identifier_b1) identifier_b1 (call (attribute (identifier_np) identifier_np (identifier_log) identifier_log )attribute (argument_list (identifier_w) identifier_w )argument_list )call )binary_operator (identifier_b0) identifier_b0 )binary_operator )assignment )expression_statement (return_statement (identifier_b) identifier_b )return_statement )block )function_definition )module
Calculate the b coefficient.
(module (function_definition (function_name__mangle_prefix) function_name__mangle_prefix (parameters (identifier_res) identifier_res )parameters (block (expression_statement (assignment (subscript (identifier_res) identifier_res (string_'total_addresses') string_'total_addresses' )subscript (call (identifier_unicode) identifier_unicode (argument_list (subscript (identifier_res) identifier_res (string_'total_addresses') string_'total_addresses' )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_res) identifier_res (string_'used_addresses') string_'used_addresses' )subscript (call (identifier_unicode) identifier_unicode (argument_list (subscript (identifier_res) identifier_res (string_'used_addresses') string_'used_addresses' )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_res) identifier_res (string_'free_addresses') string_'free_addresses' )subscript (call (identifier_unicode) identifier_unicode (argument_list (subscript (identifier_res) identifier_res (string_'free_addresses') string_'free_addresses' )subscript )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (subscript (identifier_res) identifier_res (string_'expires') string_'expires' )subscript (identifier_tzinfo) identifier_tzinfo )attribute (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_res) identifier_res (string_'expires') string_'expires' )subscript (call (attribute (attribute (identifier_pytz) identifier_pytz (identifier_utc) identifier_utc )attribute (identifier_localize) identifier_localize )attribute (argument_list (subscript (identifier_res) identifier_res (string_'expires') string_'expires' )subscript )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (subscript (identifier_res) identifier_res (string_'expires') string_'expires' )subscript (call (attribute (attribute (identifier_pytz) identifier_pytz (identifier_utc) identifier_utc )attribute (identifier_localize) identifier_localize )attribute (argument_list (attribute (attribute (identifier_datetime) identifier_datetime (identifier_datetime) identifier_datetime )attribute (identifier_max) identifier_max )attribute )argument_list )call )comparison_operator (block (expression_statement (assignment (subscript (identifier_res) identifier_res (string_'expires') string_'expires' )subscript (None) None )assignment )expression_statement )block )if_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
Mangle prefix result
(module (function_definition (function_name_list_spiders) function_name_list_spiders (parameters (identifier_self) identifier_self (identifier_project) identifier_project )parameters (block (expression_statement (assignment (identifier_url) identifier_url (call (attribute (identifier_self) identifier_self (identifier__build_url) identifier__build_url )attribute (argument_list (attribute (identifier_constants) identifier_constants (identifier_LIST_SPIDERS_ENDPOINT) identifier_LIST_SPIDERS_ENDPOINT )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_params) identifier_params (dictionary (pair (string_'project') string_'project' (identifier_project) identifier_project )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_json) identifier_json (call (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_url) identifier_url (keyword_argument (identifier_params) identifier_params (identifier_params) identifier_params )keyword_argument (keyword_argument (identifier_timeout) identifier_timeout (attribute (identifier_self) identifier_self (identifier_timeout) identifier_timeout )attribute )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (subscript (identifier_json) identifier_json (string_'spiders') string_'spiders' )subscript )return_statement )block )function_definition )module
Lists all known spiders for a specific project. First class, maps to Scrapyd's list spiders endpoint.
(module (function_definition (function_name_get_genes_for_hgnc_id) function_name_get_genes_for_hgnc_id (parameters (identifier_self) identifier_self (identifier_hgnc_symbol) identifier_hgnc_symbol )parameters (block (expression_statement (assignment (identifier_headers) identifier_headers (dictionary (pair (string_"content-type") string_"content-type" (string_"application/json") string_"application/json" )pair )dictionary )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_attempt) identifier_attempt )attribute (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (identifier_ext) identifier_ext (call (attribute (string_"/xrefs/symbol/homo_sapiens/{}") string_"/xrefs/symbol/homo_sapiens/{}" (identifier_format) identifier_format )attribute (argument_list (identifier_hgnc_symbol) identifier_hgnc_symbol )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_r) identifier_r (call (attribute (identifier_self) identifier_self (identifier_ensembl_request) identifier_ensembl_request )attribute (argument_list (identifier_ext) identifier_ext (identifier_headers) identifier_headers )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_genes) identifier_genes (list )list )assignment )expression_statement (for_statement (identifier_item) identifier_item (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (identifier_r) identifier_r )argument_list )call (block (if_statement (comparison_operator (subscript (identifier_item) identifier_item (string_"type") string_"type" )subscript (string_"gene") string_"gene" )comparison_operator (block (expression_statement (call (attribute (identifier_genes) identifier_genes (identifier_append) identifier_append )attribute (argument_list (subscript (identifier_item) identifier_item (string_"id") string_"id" )subscript )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_genes) identifier_genes )return_statement )block )function_definition )module
obtain the ensembl gene IDs that correspond to a HGNC symbol
(module (function_definition (function_name_to_python) function_name_to_python (parameters (identifier_self) identifier_self (identifier_reply) identifier_reply (default_parameter (identifier_propagate) identifier_propagate (True) True )default_parameter )parameters (block (try_statement (block (return_statement (subscript (identifier_reply) identifier_reply (string_'ok') string_'ok' )subscript )return_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (expression_statement (assignment (identifier_error) identifier_error (call (attribute (identifier_self) identifier_self (identifier_Error) identifier_Error )attribute (argument_list (list_splat (boolean_operator (call (attribute (identifier_reply) identifier_reply (identifier_get) identifier_get )attribute (argument_list (string_'nok') string_'nok' )argument_list )call (tuple )tuple )boolean_operator )list_splat )argument_list )call )assignment )expression_statement (if_statement (identifier_propagate) identifier_propagate (block (raise_statement (identifier_error) identifier_error )raise_statement )block )if_statement (return_statement (identifier_error) identifier_error )return_statement )block )except_clause )try_statement )block )function_definition )module
Extracts the value out of the reply message. :param reply: In the case of a successful call the reply message will be:: {'ok': return_value, **default_fields} Therefore the method returns: return_value, **default_fields If the method raises an exception the reply message will be:: {'nok': [repr exc, str traceback], **default_fields} :keyword propagate - Propagate exceptions raised instead of returning a result representation of the error.
(module (function_definition (function_name_set_ignore_interrupts) function_name_set_ignore_interrupts (parameters (default_parameter (identifier_flag) identifier_flag (True) True )default_parameter )parameters (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_"setting ignore_interrupts to %r") string_"setting ignore_interrupts to %r" (identifier_flag) identifier_flag )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_state) identifier_state (identifier_ignore_interrupts) identifier_ignore_interrupts )attribute (call (identifier_bool) identifier_bool (argument_list (identifier_flag) identifier_flag )argument_list )call )assignment )expression_statement )block )function_definition )module
turn off EINTR-raising from emulated syscalls on interruption by signals due to the nature of greenhouse's system call emulation, ``signal.siginterrupt`` can't be made to work with it. specifically, greenhouse can't differentiate between different signals. so this function toggles whether to restart for *ALL* or *NO* signals. :param flag: whether to turn EINTR exceptions off (``True``) or on (``False``) :type flag: bool
(module (function_definition (function_name_run_pip_install) function_name_run_pip_install (parameters (default_parameter (identifier_upgrade) identifier_upgrade (integer_0) integer_0 )default_parameter )parameters (block (expression_statement (assignment (identifier_command) identifier_command (call (attribute (string_'pip install -r {0}') string_'pip install -r {0}' (identifier_format) identifier_format )attribute (argument_list (call (attribute (identifier_settings) identifier_settings (identifier_FAB_SETTING) identifier_FAB_SETTING )attribute (argument_list (string_'SERVER_REQUIREMENTS_PATH') string_'SERVER_REQUIREMENTS_PATH' )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (identifier_upgrade) identifier_upgrade (block (expression_statement (augmented_assignment (identifier_command) identifier_command (string_' --upgrade') string_' --upgrade' )augmented_assignment )expression_statement )block )if_statement (expression_statement (call (identifier_run_workon) identifier_run_workon (argument_list (identifier_command) identifier_command )argument_list )call )expression_statement )block )function_definition )module
Installs the requirement.txt file on the given server. Usage:: fab <server> run_pip_install fab <server> run_pip_install:upgrade=1 :param upgrade: If set to 1, the command will be executed with the ``--upgrade`` flag.
(module (function_definition (function_name_values) function_name_values (parameters (identifier_self) identifier_self )parameters (block (function_definition (function_name_iter_values) function_name_iter_values (parameters )parameters (block (expression_statement (assignment (identifier_val) identifier_val (attribute (attribute (identifier_self) identifier_self (identifier__element) identifier__element )attribute (identifier_val) identifier_val )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_val) identifier_val (None) None )comparison_operator (block (return_statement )return_statement )block )if_statement (for_statement (identifier_idx) identifier_idx (call (identifier_range) identifier_range (argument_list (attribute (identifier_val) identifier_val (identifier_ptCount_val) identifier_ptCount_val )attribute )argument_list )call (block (expression_statement (yield (call (attribute (identifier_val) identifier_val (identifier_pt_v) identifier_pt_v )attribute (argument_list (identifier_idx) identifier_idx )argument_list )call )yield )expression_statement )block )for_statement )block )function_definition (return_statement (call (identifier_tuple) identifier_tuple (argument_list (call (identifier_iter_values) identifier_iter_values (argument_list )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Read-only. A sequence containing the float values for this series, in the order they appear on the chart.
(module (function_definition (function_name_check_enough_space) function_name_check_enough_space (parameters (identifier_dataset_local_dir) identifier_dataset_local_dir (identifier_remote_fname) identifier_remote_fname (identifier_local_fname) identifier_local_fname (default_parameter (identifier_max_disk_usage) identifier_max_disk_usage (float_0.9) float_0.9 )default_parameter )parameters (block (expression_statement (assignment (identifier_storage_need) identifier_storage_need (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_getsize) identifier_getsize )attribute (argument_list (identifier_remote_fname) identifier_remote_fname )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_storage_total) identifier_storage_total (identifier_storage_used) identifier_storage_used )pattern_list (call (identifier_disk_usage) identifier_disk_usage (argument_list (identifier_dataset_local_dir) identifier_dataset_local_dir )argument_list )call )assignment )expression_statement (return_statement (parenthesized_expression (comparison_operator (parenthesized_expression (binary_operator (identifier_storage_used) identifier_storage_used (identifier_storage_need) identifier_storage_need )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (identifier_storage_total) identifier_storage_total (identifier_max_disk_usage) identifier_max_disk_usage )binary_operator )parenthesized_expression )comparison_operator )parenthesized_expression )return_statement )block )function_definition )module
Check if the given local folder has enough space. Check if the given local folder has enough space to store the specified remote file. Parameters ---------- remote_fname : str Path to the remote file remote_fname : str Path to the local folder max_disk_usage : float Fraction indicating how much of the total space in the local folder can be used before the local cache must stop adding to it. Returns ------- output : boolean True if there is enough space to store the remote file.
(module (function_definition (function_name_spaceless_pdf_plot_maker) function_name_spaceless_pdf_plot_maker (parameters (identifier_array) identifier_array (identifier_filename) identifier_filename (default_parameter (identifier_vmax) identifier_vmax (None) None )default_parameter (default_parameter (identifier_dpi) identifier_dpi (identifier_DEFAULT_DPI) identifier_DEFAULT_DPI )default_parameter )parameters (block (if_statement (comparison_operator (identifier_vmax) identifier_vmax (None) None )comparison_operator (block (expression_statement (assignment (identifier_vmax) identifier_vmax (call (attribute (identifier_np) identifier_np (identifier_percentile) identifier_percentile )attribute (argument_list (identifier_array) identifier_array (identifier_DEFAULT_SATURATION_THRESHOLD) identifier_DEFAULT_SATURATION_THRESHOLD )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (call (attribute (identifier_plt) identifier_plt (identifier_gca) identifier_gca )attribute (argument_list )argument_list )call (identifier_set_axis_off) identifier_set_axis_off )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_subplots_adjust) identifier_subplots_adjust )attribute (argument_list (keyword_argument (identifier_top) identifier_top (integer_1) integer_1 )keyword_argument (keyword_argument (identifier_bottom) identifier_bottom (integer_0) integer_0 )keyword_argument (keyword_argument (identifier_right) identifier_right (integer_1) integer_1 )keyword_argument (keyword_argument (identifier_left) identifier_left (integer_0) integer_0 )keyword_argument (keyword_argument (identifier_hspace) identifier_hspace (integer_0) integer_0 )keyword_argument (keyword_argument (identifier_wspace) identifier_wspace (integer_0) integer_0 )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_margins) identifier_margins )attribute (argument_list (integer_0) integer_0 (integer_0) integer_0 )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (call (attribute (identifier_plt) identifier_plt (identifier_gca) identifier_gca )attribute (argument_list )argument_list )call (identifier_xaxis) identifier_xaxis )attribute (identifier_set_major_locator) identifier_set_major_locator )attribute (argument_list (call (attribute (identifier_plt) identifier_plt (identifier_NullLocator) identifier_NullLocator )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (call (attribute (identifier_plt) identifier_plt (identifier_gca) identifier_gca )attribute (argument_list )argument_list )call (identifier_yaxis) identifier_yaxis )attribute (identifier_set_major_locator) identifier_set_major_locator )attribute (argument_list (call (attribute (identifier_plt) identifier_plt (identifier_NullLocator) identifier_NullLocator )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_figure) identifier_figure )attribute (argument_list )argument_list )call )expression_statement (if_statement (identifier_SEABORN) identifier_SEABORN (block (expression_statement (call (attribute (identifier_sns) identifier_sns (identifier_heatmap) identifier_heatmap )attribute (argument_list (identifier_array) identifier_array (keyword_argument (identifier_vmax) identifier_vmax (identifier_vmax) identifier_vmax )keyword_argument (keyword_argument (identifier_cmap) identifier_cmap (string_"Reds") string_"Reds" )keyword_argument )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_imshow) identifier_imshow )attribute (argument_list (identifier_array) identifier_array (keyword_argument (identifier_vmax) identifier_vmax (identifier_vmax) identifier_vmax )keyword_argument (keyword_argument (identifier_cmap) identifier_cmap (string_"Reds") string_"Reds" )keyword_argument (keyword_argument (identifier_interpolation) identifier_interpolation (string_"none") string_"none" )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_colorbar) identifier_colorbar )attribute (argument_list )argument_list )call )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_savefig) identifier_savefig )attribute (argument_list (identifier_filename) identifier_filename (keyword_argument (identifier_bbox_inches) identifier_bbox_inches (string_"tight") string_"tight" )keyword_argument (keyword_argument (identifier_pad_inches) identifier_pad_inches (float_0.0) float_0.0 )keyword_argument (keyword_argument (identifier_dpi) identifier_dpi (identifier_dpi) identifier_dpi )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_plt) identifier_plt (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Draw a pretty plot from an array A function that performs all the tedious matplotlib magic to draw a 2D array with as few parameters and as little whitespace as possible. Parameters ---------- array : array_like The input array to draw. filename : file, str or pathlib.Path The output image to save the array into. vmax : float, optional The default saturation threshold for the array. If set to None, the 80th percentile value of the array is chosen. Default is None. dpi : int, optional Dots per inch (DPI) of the output image. Default is 200.
(module (function_definition (function_name_build) function_name_build (parameters (default_parameter (identifier_id) identifier_id (None) None )default_parameter (default_parameter (identifier_name) identifier_name (None) None )default_parameter (default_parameter (identifier_revision) identifier_revision (None) None )default_parameter (default_parameter (identifier_temporary_build) identifier_temporary_build (False) False )default_parameter (default_parameter (identifier_timestamp_alignment) identifier_timestamp_alignment (False) False )default_parameter (default_parameter (identifier_no_build_dependencies) identifier_no_build_dependencies (False) False )default_parameter (default_parameter (identifier_keep_pod_on_failure) identifier_keep_pod_on_failure (False) False )default_parameter (default_parameter (identifier_force_rebuild) identifier_force_rebuild (False) False )default_parameter (default_parameter (identifier_rebuild_mode) identifier_rebuild_mode (attribute (identifier_common) identifier_common (identifier_REBUILD_MODES_DEFAULT) identifier_REBUILD_MODES_DEFAULT )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (identifier_build_raw) identifier_build_raw (argument_list (identifier_id) identifier_id (identifier_name) identifier_name (identifier_revision) identifier_revision (identifier_temporary_build) identifier_temporary_build (identifier_timestamp_alignment) identifier_timestamp_alignment (identifier_no_build_dependencies) identifier_no_build_dependencies (identifier_keep_pod_on_failure) identifier_keep_pod_on_failure (identifier_force_rebuild) identifier_force_rebuild (identifier_rebuild_mode) identifier_rebuild_mode )argument_list )call )assignment )expression_statement (if_statement (identifier_data) identifier_data (block (return_statement (call (attribute (identifier_utils) identifier_utils (identifier_format_json) identifier_format_json )attribute (argument_list (identifier_data) identifier_data )argument_list )call )return_statement )block )if_statement )block )function_definition )module
Trigger a BuildConfiguration by name or ID
(module (function_definition (function_name___populate_repositories_of_interest) function_name___populate_repositories_of_interest (parameters (identifier_self) identifier_self (identifier_username) identifier_username )parameters (block (expression_statement (assignment (identifier_user) identifier_user (call (attribute (attribute (identifier_self) identifier_self (identifier_github) identifier_github )attribute (identifier_get_user) identifier_get_user )attribute (argument_list (identifier_username) identifier_username )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_user_starred_repositories) identifier_user_starred_repositories )attribute (identifier_extend) identifier_extend )attribute (argument_list (call (attribute (identifier_user) identifier_user (identifier_get_starred) identifier_get_starred )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_deep_dive) identifier_deep_dive )attribute (block (for_statement (identifier_following_user) identifier_following_user (call (attribute (identifier_user) identifier_user (identifier_get_following) identifier_get_following )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_user_following_starred_repositories) identifier_user_following_starred_repositories )attribute (identifier_extend) identifier_extend )attribute (argument_list (call (attribute (identifier_following_user) identifier_following_user (identifier_get_starred) identifier_get_starred )attribute (argument_list )argument_list )call )argument_list )call )expression_statement )block )for_statement )block )if_statement )block )function_definition )module
Method to populate repositories which will be used to suggest repositories for the user. For this purpose we use two kinds of repositories. 1. Repositories starred by user him/herself. 2. Repositories starred by the users followed by the user. :param username: Username for the user for whom repositories are being suggested for.
(module (function_definition (function_name_estimateKronCovariances) function_name_estimateKronCovariances (parameters (identifier_phenos) identifier_phenos (default_parameter (identifier_K1r) identifier_K1r (None) None )default_parameter (default_parameter (identifier_K1c) identifier_K1c (None) None )default_parameter (default_parameter (identifier_K2r) identifier_K2r (None) None )default_parameter (default_parameter (identifier_K2c) identifier_K2c (None) None )default_parameter (default_parameter (identifier_covs) identifier_covs (None) None )default_parameter (default_parameter (identifier_Acovs) identifier_Acovs (None) None )default_parameter (default_parameter (identifier_covar_type) identifier_covar_type (string_'lowrank_diag') string_'lowrank_diag' )default_parameter (default_parameter (identifier_rank) identifier_rank (integer_1) integer_1 )default_parameter )parameters (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_".. Training the backgrond covariance with a GP model") string_".. Training the backgrond covariance with a GP model" )argument_list )call )expression_statement (expression_statement (assignment (identifier_vc) identifier_vc (call (attribute (identifier_VAR) identifier_VAR (identifier_CVarianceDecomposition) identifier_CVarianceDecomposition )attribute (argument_list (identifier_phenos) identifier_phenos )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_K1r) identifier_K1r (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_vc) identifier_vc (identifier_addRandomEffect) identifier_addRandomEffect )attribute (argument_list (identifier_K1r) identifier_K1r (keyword_argument (identifier_covar_type) identifier_covar_type (identifier_covar_type) identifier_covar_type )keyword_argument (keyword_argument (identifier_rank) identifier_rank (identifier_rank) identifier_rank )keyword_argument )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_K2r) identifier_K2r (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_vc) identifier_vc (identifier_addRandomEffect) identifier_addRandomEffect )attribute (argument_list (keyword_argument (identifier_is_noise) identifier_is_noise (True) True )keyword_argument (keyword_argument (identifier_K) identifier_K (identifier_K2r) identifier_K2r )keyword_argument (keyword_argument (identifier_covar_type) identifier_covar_type (identifier_covar_type) identifier_covar_type )keyword_argument (keyword_argument (identifier_rank) identifier_rank (identifier_rank) identifier_rank )keyword_argument )argument_list )call )expression_statement )block )if_statement (for_statement (identifier_ic) identifier_ic (call (identifier_range) identifier_range (argument_list (call (identifier_len) identifier_len (argument_list (identifier_Acovs) identifier_Acovs )argument_list )call )argument_list )call (block (expression_statement (call (attribute (identifier_vc) identifier_vc (identifier_addFixedEffect) identifier_addFixedEffect )attribute (argument_list (subscript (identifier_covs) identifier_covs (identifier_ic) identifier_ic )subscript (subscript (identifier_Acovs) identifier_Acovs (identifier_ic) identifier_ic )subscript )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_start) identifier_start (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_conv) identifier_conv (call (attribute (identifier_vc) identifier_vc (identifier_findLocalOptimum) identifier_findLocalOptimum )attribute (argument_list (keyword_argument (identifier_fast) identifier_fast (True) True )keyword_argument )argument_list )call )assignment )expression_statement (assert_statement (identifier_conv) identifier_conv (string_"CVariance Decomposition has not converged") string_"CVariance Decomposition has not converged" )assert_statement (expression_statement (assignment (identifier_time_el) identifier_time_el (binary_operator (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call (identifier_start) identifier_start )binary_operator )assignment )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (parenthesized_expression (binary_operator (string_"Background model trained in %.2f s") string_"Background model trained in %.2f s" (identifier_time_el) identifier_time_el )binary_operator )parenthesized_expression )argument_list )call )expression_statement (return_statement (identifier_vc) identifier_vc )return_statement )block )function_definition )module
estimates the background covariance model before testing Args: phenos: [N x P] SP.array of P phenotypes for N individuals K1r: [N x N] SP.array of LMM-covariance/kinship koefficients (optional) If not provided, then linear regression analysis is performed K1c: [P x P] SP.array of LMM-covariance/kinship koefficients (optional) If not provided, then linear regression analysis is performed K2r: [N x N] SP.array of LMM-covariance/kinship koefficients (optional) If not provided, then linear regression analysis is performed K2c: [P x P] SP.array of LMM-covariance/kinship koefficients (optional) If not provided, then linear regression analysis is performed covs: list of SP.arrays holding covariates. Each covs[i] has one corresponding Acovs[i] Acovs: list of SP.arrays holding the phenotype design matrices for covariates. Each covs[i] has one corresponding Acovs[i]. covar_type: type of covaraince to use. Default 'freeform'. possible values are 'freeform': free form optimization, 'fixed': use a fixed matrix specified in covar_K0, 'diag': optimize a diagonal matrix, 'lowrank': optimize a low rank matrix. The rank of the lowrank part is specified in the variable rank, 'lowrank_id': optimize a low rank matrix plus the weight of a constant diagonal matrix. The rank of the lowrank part is specified in the variable rank, 'lowrank_diag': optimize a low rank matrix plus a free diagonal matrix. The rank of the lowrank part is specified in the variable rank, 'block': optimize the weight of a constant P x P block matrix of ones, 'block_id': optimize the weight of a constant P x P block matrix of ones plus the weight of a constant diagonal matrix, 'block_diag': optimize the weight of a constant P x P block matrix of ones plus a free diagonal matrix, rank: rank of a possible lowrank component (default 1) Returns: CVarianceDecomposition object
(module (function_definition (function_name_longest_run_1d) function_name_longest_run_1d (parameters (identifier_arr) identifier_arr )parameters (block (expression_statement (assignment (pattern_list (identifier_v) identifier_v (identifier_rl) identifier_rl )pattern_list (subscript (call (identifier_rle_1d) identifier_rle_1d (argument_list (identifier_arr) identifier_arr )argument_list )call (slice (colon) colon (integer_2) integer_2 )slice )subscript )assignment )expression_statement (return_statement (call (attribute (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (identifier_v) identifier_v (identifier_rl) identifier_rl (integer_0) integer_0 )argument_list )call (identifier_max) identifier_max )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
Return the length of the longest consecutive run of identical values. Parameters ---------- arr : bool array Input array Returns ------- int Length of longest run.
(module (function_definition (function_name_copy_contents_to) function_name_copy_contents_to (parameters (identifier_self) identifier_self (identifier_destination) identifier_destination )parameters (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (binary_operator (string_"Copying contents of %s to %s") string_"Copying contents of %s to %s" (tuple (identifier_self) identifier_self (identifier_destination) identifier_destination )tuple )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_target) identifier_target (call (identifier_Folder) identifier_Folder (argument_list (identifier_destination) identifier_destination )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_target) identifier_target (identifier_make) identifier_make )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__create_target_tree) identifier__create_target_tree )attribute (argument_list (identifier_target) identifier_target )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_dir_util) identifier_dir_util (identifier_copy_tree) identifier_copy_tree )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_path) identifier_path )attribute (call (identifier_unicode) identifier_unicode (argument_list (identifier_target) identifier_target )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_target) identifier_target )return_statement )block )function_definition )module
Copies the contents of this directory to the given destination. Returns a Folder object that represents the moved directory.
(module (function_definition (function_name_remove_label) function_name_remove_label (parameters (identifier_self) identifier_self (identifier_label) identifier_label (default_parameter (identifier_relabel) identifier_relabel (False) False )default_parameter )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_remove_labels) identifier_remove_labels )attribute (argument_list (identifier_label) identifier_label (keyword_argument (identifier_relabel) identifier_relabel (identifier_relabel) identifier_relabel )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Remove the label number. The removed label is assigned a value of zero (i.e., background). Parameters ---------- label : int The label number to remove. relabel : bool, optional If `True`, then the segmentation image will be relabeled such that the labels are in consecutive order starting from 1. Examples -------- >>> from photutils import SegmentationImage >>> segm = SegmentationImage([[1, 1, 0, 0, 4, 4], ... [0, 0, 0, 0, 0, 4], ... [0, 0, 3, 3, 0, 0], ... [7, 0, 0, 0, 0, 5], ... [7, 7, 0, 5, 5, 5], ... [7, 7, 0, 0, 5, 5]]) >>> segm.remove_label(label=5) >>> segm.data array([[1, 1, 0, 0, 4, 4], [0, 0, 0, 0, 0, 4], [0, 0, 3, 3, 0, 0], [7, 0, 0, 0, 0, 0], [7, 7, 0, 0, 0, 0], [7, 7, 0, 0, 0, 0]]) >>> segm = SegmentationImage([[1, 1, 0, 0, 4, 4], ... [0, 0, 0, 0, 0, 4], ... [0, 0, 3, 3, 0, 0], ... [7, 0, 0, 0, 0, 5], ... [7, 7, 0, 5, 5, 5], ... [7, 7, 0, 0, 5, 5]]) >>> segm.remove_label(label=5, relabel=True) >>> segm.data array([[1, 1, 0, 0, 3, 3], [0, 0, 0, 0, 0, 3], [0, 0, 2, 2, 0, 0], [4, 0, 0, 0, 0, 0], [4, 4, 0, 0, 0, 0], [4, 4, 0, 0, 0, 0]])
(module (function_definition (function_name_users) function_name_users (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (attribute (attribute (identifier_sa) identifier_sa (identifier_orm) identifier_orm )attribute (identifier_relationship) identifier_relationship )attribute (argument_list (string_"User") string_"User" (keyword_argument (identifier_secondary) identifier_secondary (string_"users_resources_permissions") string_"users_resources_permissions" )keyword_argument (keyword_argument (identifier_passive_deletes) identifier_passive_deletes (True) True )keyword_argument (keyword_argument (identifier_passive_updates) identifier_passive_updates (True) True )keyword_argument )argument_list )call )return_statement )block )function_definition )module
returns all users that have permissions for this resource
(module (function_definition (function_name_queue_stats) function_name_queue_stats (parameters (identifier_self) identifier_self (identifier_queue) identifier_queue (identifier_tags) identifier_tags )parameters (block (for_statement (pattern_list (identifier_mname) identifier_mname (identifier_pymqi_value) identifier_pymqi_value )pattern_list (call (identifier_iteritems) identifier_iteritems (argument_list (call (attribute (identifier_metrics) identifier_metrics (identifier_queue_metrics) identifier_queue_metrics )attribute (argument_list )argument_list )call )argument_list )call (block (try_statement (block (expression_statement (assignment (identifier_mname) identifier_mname (call (attribute (string_'{}.queue.{}') string_'{}.queue.{}' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_METRIC_PREFIX) identifier_METRIC_PREFIX )attribute (identifier_mname) identifier_mname )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_m) identifier_m (call (attribute (identifier_queue) identifier_queue (identifier_inquire) identifier_inquire )attribute (argument_list (identifier_pymqi_value) identifier_pymqi_value )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_gauge) identifier_gauge )attribute (argument_list (identifier_mname) identifier_mname (identifier_m) identifier_m (keyword_argument (identifier_tags) identifier_tags (identifier_tags) identifier_tags )keyword_argument )argument_list )call )expression_statement )block (except_clause (as_pattern (attribute (identifier_pymqi) identifier_pymqi (identifier_Error) identifier_Error )attribute (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_warning) identifier_warning )attribute (argument_list (call (attribute (string_"Error getting queue stats for {}: {}") string_"Error getting queue stats for {}: {}" (identifier_format) identifier_format )attribute (argument_list (identifier_queue) identifier_queue (identifier_e) identifier_e )argument_list )call )argument_list )call )expression_statement )block )except_clause )try_statement )block )for_statement (for_statement (pattern_list (identifier_mname) identifier_mname (identifier_func) identifier_func )pattern_list (call (identifier_iteritems) identifier_iteritems (argument_list (call (attribute (identifier_metrics) identifier_metrics (identifier_queue_metrics_functions) identifier_queue_metrics_functions )attribute (argument_list )argument_list )call )argument_list )call (block (try_statement (block (expression_statement (assignment (identifier_mname) identifier_mname (call (attribute (string_'{}.queue.{}') string_'{}.queue.{}' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_METRIC_PREFIX) identifier_METRIC_PREFIX )attribute (identifier_mname) identifier_mname )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_m) identifier_m (call (identifier_func) identifier_func (argument_list (identifier_queue) identifier_queue )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_gauge) identifier_gauge )attribute (argument_list (identifier_mname) identifier_mname (identifier_m) identifier_m (keyword_argument (identifier_tags) identifier_tags (identifier_tags) identifier_tags )keyword_argument )argument_list )call )expression_statement )block (except_clause (as_pattern (attribute (identifier_pymqi) identifier_pymqi (identifier_Error) identifier_Error )attribute (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_warning) identifier_warning )attribute (argument_list (call (attribute (string_"Error getting queue stats for {}: {}") string_"Error getting queue stats for {}: {}" (identifier_format) identifier_format )attribute (argument_list (identifier_queue) identifier_queue (identifier_e) identifier_e )argument_list )call )argument_list )call )expression_statement )block )except_clause )try_statement )block )for_statement )block )function_definition )module
Grab stats from queues
(module (function_definition (function_name_const_shuffle) function_name_const_shuffle (parameters (identifier_arr) identifier_arr (default_parameter (identifier_seed) identifier_seed (integer_23980) integer_23980 )default_parameter )parameters (block (expression_statement (assignment (identifier_old_seed) identifier_old_seed (call (attribute (attribute (identifier_np) identifier_np (identifier_random) identifier_random )attribute (identifier_seed) identifier_seed )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_np) identifier_np (identifier_random) identifier_random )attribute (identifier_seed) identifier_seed )attribute (argument_list (identifier_seed) identifier_seed )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_np) identifier_np (identifier_random) identifier_random )attribute (identifier_shuffle) identifier_shuffle )attribute (argument_list (identifier_arr) identifier_arr )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_np) identifier_np (identifier_random) identifier_random )attribute (identifier_seed) identifier_seed )attribute (argument_list (identifier_old_seed) identifier_old_seed )argument_list )call )expression_statement )block )function_definition )module
Shuffle an array in-place with a fixed seed.
(module (function_definition (function_name_to_dict) function_name_to_dict (parameters (identifier_self) identifier_self )parameters (block (return_statement (dictionary (pair (string_'access_key') string_'access_key' (attribute (identifier_self) identifier_self (identifier_access_key) identifier_access_key )attribute )pair (pair (string_'secret_key') string_'secret_key' (attribute (identifier_self) identifier_self (identifier_secret_key) identifier_secret_key )attribute )pair (pair (string_'session_token') string_'session_token' (attribute (identifier_self) identifier_self (identifier_session_token) identifier_session_token )attribute )pair (pair (string_'expiration') string_'expiration' (attribute (identifier_self) identifier_self (identifier_expiration) identifier_expiration )attribute )pair (pair (string_'request_id') string_'request_id' (attribute (identifier_self) identifier_self (identifier_request_id) identifier_request_id )attribute )pair )dictionary )return_statement )block )function_definition )module
Return a Python dict containing the important information about this Session Token.
(module (function_definition (function_name_add_user) function_name_add_user (parameters (identifier_self) identifier_self (identifier_username) identifier_username (identifier_email) identifier_email (default_parameter (identifier_directoryId) identifier_directoryId (integer_1) integer_1 )default_parameter (default_parameter (identifier_password) identifier_password (None) None )default_parameter (default_parameter (identifier_fullname) identifier_fullname (None) None )default_parameter (default_parameter (identifier_notify) identifier_notify (False) False )default_parameter (default_parameter (identifier_active) identifier_active (True) True )default_parameter (default_parameter (identifier_ignore_existing) identifier_ignore_existing (False) False )default_parameter (default_parameter (identifier_application_keys) identifier_application_keys (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_fullname) identifier_fullname )not_operator (block (expression_statement (assignment (identifier_fullname) identifier_fullname (identifier_username) identifier_username )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_url) identifier_url (binary_operator (subscript (attribute (identifier_self) identifier_self (identifier__options) identifier__options )attribute (string_'server') string_'server' )subscript (string_'/rest/api/latest/user') string_'/rest/api/latest/user' )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_x) identifier_x (call (identifier_OrderedDict) identifier_OrderedDict (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'displayName') string_'displayName' )subscript (identifier_fullname) identifier_fullname )assignment )expression_statement (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'emailAddress') string_'emailAddress' )subscript (identifier_email) identifier_email )assignment )expression_statement (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'name') string_'name' )subscript (identifier_username) identifier_username )assignment )expression_statement (if_statement (identifier_password) identifier_password (block (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'password') string_'password' )subscript (identifier_password) identifier_password )assignment )expression_statement )block )if_statement (if_statement (identifier_notify) identifier_notify (block (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'notification') string_'notification' )subscript (string_'True') string_'True' )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_application_keys) identifier_application_keys (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_x) identifier_x (string_'applicationKeys') string_'applicationKeys' )subscript (identifier_application_keys) identifier_application_keys )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_payload) identifier_payload (call (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (argument_list (identifier_x) identifier_x )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__session) identifier__session )attribute (identifier_post) identifier_post )attribute (argument_list (identifier_url) identifier_url (keyword_argument (identifier_data) identifier_data (identifier_payload) identifier_payload )keyword_argument )argument_list )call )expression_statement )block (except_clause (as_pattern (identifier_JIRAError) identifier_JIRAError (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (assignment (identifier_err) identifier_err (subscript (call (attribute (attribute (identifier_e) identifier_e (identifier_response) identifier_response )attribute (identifier_json) identifier_json )attribute (argument_list )argument_list )call (string_'errors') string_'errors' )subscript )assignment )expression_statement (if_statement (boolean_operator (boolean_operator (comparison_operator (string_'username') string_'username' (identifier_err) identifier_err )comparison_operator (comparison_operator (subscript (identifier_err) identifier_err (string_'username') string_'username' )subscript (string_'A user with that username already exists.') string_'A user with that username already exists.' )comparison_operator )boolean_operator (identifier_ignore_existing) identifier_ignore_existing )boolean_operator (block (return_statement (True) True )return_statement )block )if_statement (raise_statement (identifier_e) identifier_e )raise_statement )block )except_clause )try_statement (return_statement (True) True )return_statement )block )function_definition )module
Create a new JIRA user. :param username: the username of the new user :type username: str :param email: email address of the new user :type email: str :param directoryId: The directory ID the new user should be a part of (Default: 1) :type directoryId: int :param password: Optional, the password for the new user :type password: Optional[str] :param fullname: Optional, the full name of the new user :type fullname: Optional[str] :param notify: Whether or not to send a notification to the new user. (Default: False) :type notify: bool :param active: Whether or not to make the new user active upon creation. (Default: True) :type active: bool :param ignore_existing: Whether or not to ignore and existing user. (Default: False) :type ignore_existing: bool :param applicationKeys: Keys of products user should have access to :type applicationKeys: Optional[list] :return: Whether or not the user creation was successful. :rtype: bool :raises JIRAError: If username already exists and `ignore_existing` has not been set to `True`.