sequence
stringlengths
1.19k
35k
code
stringlengths
75
8.58k
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_base_suggested_attributes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'child...
def check_base_suggested_attributes(self, dataset): ''' Check the global suggested attributes for 2.0 templates. These go an extra step besides just checking that they exist. :param netCDF4.Dataset dataset: An open netCDF dataset :creator_type = "" ; //..............................
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_from_args_as_dataframe'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [],...
def load_from_args_as_dataframe(args): ''' Given parsed variant-loading arguments, return a pandas DataFrame. If no variant loading arguments are specified, return None. ''' if not args.variants and not args.single_variant: return None if args.variant_source_name: variant_source_...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'protected'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
def protected(self, *tests, **kwargs): _role = kwargs.pop('role', None) _roles = kwargs.pop('roles', None) or [] _csrf = kwargs.pop('csrf', None) _url_sign_in = kwargs.pop('url_sign_in', None) _request = kwargs.pop('request', None) if _role: _roles.append(_rol...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_verify_multi'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [...
def _verify_multi(self, token, verifying_keys, num_required=None): headers, payload, raw_signatures, signing_inputs = _unpack_token_json(token) if num_required is None: num_required = len(raw_signatures) if num_required > len(verifying_keys): return False if len(h...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_pic_field'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'childr...
def parse_pic_field(l, c, last_section_node, last_vars, line): parent_node = None raw_tokens = line.split(" ") tokens = [] for t in raw_tokens: if not t.isspace() and t != "": tokens.append(t) try: if tokens[0].upper() == "FD": lvl = 1 else: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getgrouploansurl'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], ...
def getgrouploansurl(idgroup, *args, **kwargs): getparams = [] if kwargs: try: if kwargs["fullDetails"] == True: getparams.append("fullDetails=true") else: getparams.append("fullDetails=false") except Exception as ex: pass ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getclientloansurl'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [],...
def getclientloansurl(idclient, *args, **kwargs): getparams = [] if kwargs: try: if kwargs["fullDetails"] == True: getparams.append("fullDetails=true") else: getparams.append("fullDetails=false") except Exception as ex: pass ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'backup_db'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '9']}; {'id': '4', 'type': 'identifier', 'children': ...
def backup_db(callback, bool_func, output_fname, *args, **kwargs): from datetime import datetime try: verbose = kwargs['verbose'] except KeyError: verbose = False try: retries = kwargs['retries'] except KeyError: retries = -1 try: force_download_latest = b...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'send'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},...
def send(self, stack: Layers): if not isinstance(stack, Stack): stack = Stack(stack) if 'callback_query' in self._update and stack.has_layer(Update): layer = stack.get_layer(Update) try: msg = self._update['callback_query']['message'] excep...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '22']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_send_text'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '9', '13']}; {'id': '4', 'type': 'identifier', 'children': [],...
async def _send_text(self, request: Request, stack: Stack, parse_mode: Optional[Text] = None): parts = [] chat_id = request.message.get_chat_id() for layer in stack.layers: if isinstance(layer, (lyr.Text, lyr....
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setRepayments'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
def setRepayments(self, *args, **kwargs): def duedate(repayment): try: return repayment['dueDate'] except KeyError as kerr: return datetime.now() try: reps = self.mamburepaymentsclass(entid=self['id'], *args, **kwargs) except At...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setTransactions'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], '...
def setTransactions(self, *args, **kwargs): def transactionid(transaction): try: return transaction['transactionId'] except KeyError as kerr: return None try: trans = self.mambutransactionsclass(entid=self['id'], *args, **kwargs) ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_filter'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
def _filter(self, environ, params): if self.queries: if 'QUERY_STRING' not in environ: return False available = set(qstr.partition('=')[0] for qstr in environ['QUERY_STRING'].split('&')) required = set(self.queries) if n...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '41']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'show'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29', '32', '35', '38']}; {...
def show( items, command='dmenu', bottom=None, fast=None, case_insensitive=None, lines=None, monitor=None, prompt=None, font=None, background=None, foreground=None, background_selected=None, foreground_selected=None)...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'clean_names'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': []...
def clean_names(lines, ensure_unique_names=False, strip_prefix=False, make_database_safe=False): names = {} for row in lines: if strip_prefix: row['name'] = row['name'][row['name'].find('-') + 1:] if row['indexed_by'] is not None: row['indexed_by']...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'do_help'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self...
def do_help(self, arg): if arg: try: func = getattr(self, 'help_' + arg) except AttributeError: try: doc = getattr(self, 'do_' + arg).__doc__ if doc: self.stdout.write("%s\n" % str(doc)) ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_echoicefield'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7', '10']}; {'id': '4', 'type': 'identifier', 'childre...
def make_echoicefield(echoices, *args, klass_name=None, **kwargs): assert issubclass(echoices, EChoice) value_type = echoices.__getvaluetype__() if value_type is str: cls_ = models.CharField elif value_type is int: cls_ = models.IntegerField elif value_type is float: cls_ = m...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '30']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_dummy'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '17', '20', '23', '26', '28']}; {'id': '4', 'type': 'iden...
def make_dummy(instance, relations = {}, datetime_default = dt.strptime('1901-01-01','%Y-%m-%d'), varchar_default = "", integer_default = 0, numeric_default = 0.0, *args, **kwargs ): init_data = { ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_headers'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
def read_headers(rfile, hdict=None): if hdict is None: hdict = {} while True: line = rfile.readline() if not line: raise ValueError("Illegal end of headers.") if line == CRLF: break if not line.endswith(CRLF): raise ValueError("HTTP req...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'send_headers'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self...
def send_headers(self): hkeys = [key.lower() for key, value in self.outheaders] status = int(self.status[:3]) if status == 413: self.close_connection = True elif "content-length" not in hkeys: if status < 200 or status in (204, 205, 304): pass ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setActivities'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
def setActivities(self, *args, **kwargs): def activityDate(activity): try: return activity['activity']['timestamp'] except KeyError as kerr: return None try: activities = self.mambuactivitiesclass(groupId=self['encodedKey'], *args, **kw...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'connect'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
def connect(self, *args, **kwargs): from copy import deepcopy if args: self.__args = deepcopy(args) if kwargs: for k,v in kwargs.items(): self.__kwargs[k] = deepcopy(v) jsresp = {} if not self.__urlfunc: return offset = ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '37']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GetDirections'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16', '19', '22', '25', '28', '31', '...
def GetDirections(self, origin, destination, sensor = False, mode = None, waypoints = None, alternatives = None, avoid = None, language = None, units = None, region = None, departure_time = None, arrival_time = None): '''Get Directions Service Pls refer to the Google Maps Web ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compactor'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'conf'},...
def compactor(conf): db = conf.get_database('compactor') limit_map = LimitContainer(conf, db) config = conf['compactor'] if get_int(config, 'max_updates', 0) <= 0: LOG.warning("Compaction is not enabled. Enable it by " "setting a positive integer value for " ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, ...
def get(self, now): with self.lock: items = self.db.zrangebyscore(self.key, 0, now - self.min_age, start=0, num=1) if not items: return None item = items[0] self.db.zrem(item) return item
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, ...
def get(self, now): items = self.script(keys=[self.key], args=[now - self.min_age]) return items[0] if items else None
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'main_cli'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '11', '17', '23', '29', ...
def main_cli(): args = _cli_argument_parser() delta_secs = args.delay i2cbus = args.bus i2c_address = args.address sensor_key = args.sensor sensor_params = args.params params = {} if sensor_params: def _parse_param(str_param): key, value = str_param.split('=') ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'variant_support'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], '...
def variant_support(variants, allele_support_df, ignore_missing=False): ''' Collect the read evidence support for the given variants. Parameters ---------- variants : iterable of varcode.Variant allele_support_df : dataframe Allele support dataframe, as output by the varlens-allele-suppo...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_wavReadData'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '9', '13', '17']}; {'id': '4', 'type': 'identifier', '...
def _wavReadData(fid, size:int, channels:int, encoding:str, bigendian:bool) -> np.ndarray: bits = int(encoding[3:]) if bits == 8: data = np.fromfile(fid, dtype=np.ubyte, count=size) if channels > 1: data = data.r...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'refreshButton'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sel...
def refreshButton(self): collapsed = self.isCollapsed() btn = self._collapseButton if not btn: return btn.setMaximumSize(MAX_SIZE, MAX_SIZE) if self.orientation() == Qt.Vertical: btn.setMaximumHeight(12) else: btn.setMaximumWi...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'applyCommand'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self...
def applyCommand(self): cursor = self.textCursor() cursor.movePosition(cursor.EndOfLine) line = projex.text.nativestring(cursor.block().text()) at_end = cursor.atEnd() modifiers = QApplication.instance().keyboardModifiers() mod_mode = at_end or...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pager'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}...
def pager(self, lines): try: line_count = 0 if self._output_filename: print(f"Output is also going to '{self.output_file}'") self._output_file = open(self._output_filename, "a+") terminal_columns, terminal_lines = shutil.get_terminal_size(fallb...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'constraints...
def merge(constraints): operators = defaultdict(set) for constraint in constraints: operators[constraint.operator].add(constraint.version) if gt in operators: gt_ver = sorted(operators[gt])[-1] else: gt_ver = None if ge in operators: ge_ver = sorted(operators[ge])[-1]...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_baxter'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'read...
def parse_baxter(reading): initial = '' medial = '' final = '' tone = '' inienv = True medienv = False finenv = False tonenv = False inichars = "pbmrtdnkgnsyhzl'x" chars = list(reading) for char in chars: if char in 'jw' and not finenv: inienv,medienv,fine...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
async def create(self, query, *, dc=None): if "Token" in query: query["Token"] = extract_attr(query["Token"], keys=["ID"]) response = await self._api.post("/v1/query", params={"dc": dc}, data=query) return response.body
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'execute'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16']}; {'id': '4', 'type': 'identifier', '...
async def execute(self, query, *, dc=None, near=None, limit=None, consistency=None): query_id = extract_attr(query, keys=["ID"]) response = await self._api.get( "/v1/query/%s/execute" % query_id, params={"dc": dc, "near": near, "limit": limit}, c...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zip_process'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'dictionary_splat_pattern', 'children': ['5']...
def zip_process(**kwargs): str_localPath = "" str_zipFileName = "" str_action = "zip" str_arcroot = "" for k,v in kwargs.items(): if k == 'path': str_localPath = v if k == 'action': str_action = v if k == 'payloadFile': str_zipFile...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'base64_process'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'dictionary_splat_pattern', 'children': ['...
def base64_process(**kwargs): str_fileToSave = "" str_fileToRead = "" str_action = "encode" data = None for k,v in kwargs.items(): if k == 'action': str_action = v if k == 'payloadBytes': data = v if k ==...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'path_localLocationCheck'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children...
def path_localLocationCheck(self, d_msg, **kwargs): b_pull = False d_meta = d_msg['meta'] if 'do' in d_meta: if d_meta['do'] == 'pull': b_pull = True if 'local' in d_meta: d_local ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rebuild'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {...
def rebuild(self): table = self.tableType() form = nativestring(self.filterFormat()) if not table and form: if self.layout().count() == 0: self.layout().addWidget(QLabel(form, self)) else: self.layout().itemAt(0).widget().setText(fo...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'filters'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13']}; {'id': '4', 'type': 'default_parameter', 'children'...
def filters(filter_directory=None, update=False, fmt='table', **kwargs): if filter_directory is None: filter_directory = resource_filename('svo_filters', 'data/filters/') p_path = os.path.join(filter_directory, 'filter_list.p') updated = False if not os.path.isfile(p_path): os.system('to...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_unit'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
def parse_unit(prop, dictionary, dt=None): '''Do a fuzzy match for `prop` in the dictionary, taking into account unit suffix.''' try: dt = timezone.parse_datetime(dictionary.get('date_time')) except TypeError: dt = None matches = [k for k in dictionary.keys() if prop in k] try: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rebuild'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {...
def rebuild( self ): self.setUpdatesEnabled(False) self.blockSignals(True) for child in self.findChildren(QObject): child.setParent(None) child.deleteLater() schema = self.schema() if ( schema ): self.setEnabled(True) uifil...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id...
def save( self ): schema = self.schema() if ( not schema ): self.saved.emit() return record = self.record() if not record: record = self._model() save_data = [] column_edits = self.findChildren(XOrbColumnEdit) for w...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'register'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sel...
async def register(self, service): response = await self._api.put("/v1/agent/service/register", data=service) return response.status == 200
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id...
def save(self): record = self.record() if not record: logger.warning('No record has been defined for %s.' % self) return False if not self.signalsBlocked(): self.aboutToSaveRecord.emit(record) self.aboutToSave.emit() values = self.s...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {...
def prepare(self): pixmap = self.property('pixmap') if pixmap is not None: return super(XWalkthroughSnapshot, self).prepare() widget = self.property('widget') if type(widget) in (unicode, str): widget = self.findReference(widget) if not widget: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'depends'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13']}; {'id': '4', 'type': 'default_parameter', 'children'...
def depends(func=None, after=None, before=None, priority=None): if not (func is None or inspect.ismethod(func) or inspect.isfunction(func)): raise ValueError("depends decorator can only be used on functions or methods") if not (after or before or priority): raise ValueError("depends decorator ne...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_translate_language_name'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [...
def _translate_language_name(self, language_name): languages = self.languages() language_id = None for ideone_index, ideone_language in languages.items(): if ideone_language.lower() == language_name.lower(): return ideone_index simple_languages = dict((k,v.spl...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'headerSortAscending'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
def headerSortAscending( self ): self.setSortingEnabled(True) self.sortByColumn(self._headerIndex, QtCore.Qt.AscendingOrder)
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'headerSortDescending'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
def headerSortDescending( self ): self.setSortingEnabled(True) self.sortByColumn(self._headerIndex, QtCore.Qt.DescendingOrder)
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_api'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
def from_api(cls, api, **kwargs): if not cls._api_attrs: raise NotImplementedError() def resolve_attribute_type(attr_type): while isinstance(attr_type, list): attr_type = attr_type[0] if attr_type == 'self': attr_type = cls ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'updateEditor'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self...
def updateEditor( self ): rule = self.currentRule() operator = self.currentOperator() widget = self.uiWidgetAREA.widget() editorType = None text = '' if ( rule ): editorType = rule.editorType(operator) if ( widget and editorType ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'StreamMetrics'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
def StreamMetrics(self, request_iterator, context): LOG.debug("StreamMetrics called") collect_args = (next(request_iterator)) max_metrics_buffer = 0 max_collect_duration = 0 cfg = Metric(pb=collect_args.Metrics_Arg.metrics[0]) try: max_metrics_buffer = int(cfg...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare_node'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data...
def prepare_node(data): if not data: return None, {} if isinstance(data, str): return data, {} if all(field in data for field in ("Node", "Service", "Checks")): return data["Node"]["Node"], data["Node"] result = {} if "ID" in data: result["Node"] = data["ID"] for ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare_service'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'd...
def prepare_service(data): if not data: return None, {} if isinstance(data, str): return data, {} if all(field in data for field in ("Node", "Service", "Checks")): return data["Service"]["ID"], data["Service"] if all(field in data for field in ("ServiceName", "ServiceID")): ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_measurement'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'm...
def add_measurement(measurement): global _buffer_size if not _enabled: LOGGER.debug('Discarding measurement for %s while not enabled', measurement.database) return if _stopping: LOGGER.warning('Discarding measurement for %s while stopping', ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'refresh'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
def refresh(self, reloadData=False, force=False): if not (self.isVisible() or force): self._refreshTimer.start() return if self.isLoading(): return if reloadData: self.refreshQueryRecords() self._refreshTimer.stop() self.wo...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tornado_run'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26']}; {'id': '4', 'type'...
def tornado_run(app, port=5000, address="", use_gevent=False, start=True, monkey_patch=None, Container=None, Server=None, threadpool=None): if Container is None: from tornado.wsgi import WSGIContainer Container = WSGIContainer if Server is None: from torna...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tornado_combiner'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']}; {'id': '4', 'type': 'iden...
def tornado_combiner(configs, use_gevent=False, start=True, monkey_patch=None, Container=None, Server=None, threadpool=None): servers = [] if monkey_patch is None: monkey_patch = use_gevent if use_gevent: if monkey_patch: from gevent import monkey ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rebuild'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {...
def rebuild( self ): navitem = self.currentItem() if ( navitem ): navitem.initialize() self.setUpdatesEnabled(False) self.scrollWidget().show() self._originalText = '' partsw = self.partsWidget() for button in self._buttonGroup.buttons(): s...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'syncView'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sel...
def syncView(self, recursive=False): gantt = self.ganttWidget() tree = self.treeWidget() if not gantt: return vwidget = gantt.viewWidget() scene = vwidget.scene() cell_w = gantt.cellWidth() tree_offset_y = tree.header().height() + 1 t...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'nodes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children...
async def nodes(self, *, dc=None, near=None, watch=None, consistency=None): params = {"dc": dc, "near": near} response = await self._api.get("/v1/catalog/nodes", params=params, watch=watch, ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '28']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'keyphrases_graph'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21']}; {'id': '4', 'type': ...
def keyphrases_graph(keyphrases, texts, referral_confidence=0.6, relevance_threshold=0.25, support_threshold=1, similarity_measure=None, synonimizer=None, language=consts.Language.ENGLISH): similarity_measure = similarity_measure or relevance.ASTRelevanceMeasure() table...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_hm_verify_message_crc_uk'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10']}; {'id': '4', 'type':...
def _hm_verify_message_crc_uk( self, thermostat_id, protocol, source, expectedFunction, expectedLength, datal ): badresponse = 0 if protocol == constants.HMV3_ID: checksum = datal[len(datal) - ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'checks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16']}; {'id': '4', 'type': 'identifier', 'c...
async def checks(self, service, *, dc=None, near=None, watch=None, consistency=None): service_id = extract_attr(service, keys=["ServiceID", "ID"]) params = {"dc": dc, "near": near} response = await self._api.get("/v1/health/checks", service_id, ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cap...
def get(cap, *args, **kwargs): if 'READTHEDOCS' in os.environ: return '' if kwargs != {}: raise TypeError("get(): No such argument %r" % kwargs.popitem()[0]) if _cache == {}: try: curses.setupterm() except: pass s = _cache.get(cap) if not s: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'draw'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'canvas'...
def draw(canvas, mol): mol.require("ScaleAndCenter") mlb = mol.size2d[2] if not mol.atom_count(): return bond_type_fn = { 1: { 0: single_bond, 1: wedged_single, 2: dashed_wedged_single, 3: wave_single, }, 2: { 0: cw_doub...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'salm2map'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': []...
def salm2map(salm, s, lmax, Ntheta, Nphi): if Ntheta < 2 or Nphi < 1: raise ValueError("Input values of Ntheta={0} and Nphi={1} ".format(Ntheta, Nphi) + "are not allowed; they must be greater than 1 and 0, respectively.") if lmax < 1: raise ValueError("Input value of lma...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'map2salm'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
def map2salm(map, s, lmax): import numpy as np map = np.ascontiguousarray(map, dtype=np.complex128) salm = np.empty(map.shape[:-2]+(N_lm(lmax),), dtype=np.complex128) if map.ndim>2: s = np.ascontiguousarray(s, dtype=np.intc) if s.ndim != map.ndim-2 or np.product(s.shape) != np.product(ma...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']}; {'id': '4', 'type': 'identifier', 'chil...
def get(self, url, store_on_error=False, xpath=None, rate_limit=None, log_hits=True, log_misses=True): try: cached = self._query(url, xpath).one() if log_hits: config.logger.info("Request cache hit: " + url) if cached.status_code != requests.codes.ok: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'event'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
def event(self, event_data, priority="normal", event_method="EVENT"): logger.debug("event: " + str(event_data)) euuid = uuid.uuid1() logger.debug("<%s> <euuid:%s> Sending event data to server: " "%s" % (str(self.cuuid), str(euuid), str(self.server))) if not self.listener.l...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id'...
def run(self): import numpy as np query = self.session.query(models.NUTS2Region.key, models.NUTS2Region.id) region_ids = self.client.df_query(query).set_index('key')['id'].to_dict() data = next(self.requires()).load() nuts = NUTS2GeoJSONInputFil...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dapply'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']}; {'id': '4', 'type': 'identifier', 'c...
def dapply(self, fn, pairwise=False, symmetric=True, diagonal=False, block=None, **kwargs): search_keys = [k for k, v in kwargs.items() if isinstance(v, list) and len(v) > 1] functions = util.make_list(fn) search = list(product(functions, util.dict_product(kwargs))) results = [] for fn, kw in search...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_identifySuperGraph'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
def _identifySuperGraph(self): if self.debug: sys.stdout.write("Condensing Graph: ") start = time.clock() G = nx.DiGraph() G.add_edges_from(self.edges) if self.short_circuit: self.superNodes = G.nodes() self.superArcs = G.edges() ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_construct_nx_tree'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': []...
def _construct_nx_tree(self, thisTree, thatTree=None): if self.debug: sys.stdout.write("Networkx Tree construction: ") start = time.clock() nxTree = nx.DiGraph() nxTree.add_edges_from(thisTree.edges) nodesOfThatTree = [] if thatTree is not None: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_process_tree'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
def _process_tree(self, thisTree, thatTree): if self.debug: sys.stdout.write("Processing Tree: ") start = time.clock() if len(thisTree.nodes()) > 1: leaves = set( [ v for v in thisTree.nodes() ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_project_content_commit_date'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter'...
def get_project_content_commit_date(root_dir='.', exclusions=None): logger = logging.getLogger(__name__) extensions = ('rst', 'ipynb', 'png', 'jpeg', 'jpg', 'svg', 'gif') content_paths = [] for extname in extensions: content_paths += get_filepaths_with_extension( extname, ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_table'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'se...
def get_table(self, name): if name is None: assert self.active_table, "Can't get table without name unless an active table is set" name = self.active_table.name if self.active_worksheet: table = self.active_worksheet.get_table(name) assert tabl...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'assign_valence'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'mo...
def assign_valence(mol): for u, v, bond in mol.bonds_iter(): if bond.order == 2: mol.atom(u).pi = 1 mol.atom(v).pi = 1 if mol.atom(u).symbol == "O" and not mol.atom(u).charge: mol.atom(v).carbonyl_C = 1 if mol.atom(v).symbol == "O" and not mol....
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'assign_charge'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
def assign_charge(mol, force_recalc=False): mol.require("Aromatic") for i, nbrs in mol.neighbors_iter(): atom = mol.atom(i) nbrcnt = len(nbrs) if atom.symbol == "N": if not atom.pi: mol.atom(i).charge_phys = 1 elif nbrcnt == 1 and atom.pi == 2: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_alphabetical_members'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': ...
def _get_alphabetical_members(obj, predicate): fields = dict(inspect.getmembers(obj, predicate)) keys = list(fields.keys()) keys.sort() return {k: fields[k] for k in keys}
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id'...
def run(self): request_cache = cache.get_request_cache() session = client.get_client().create_session() self.mark_incomplete() universes = [] with session.no_autoflush: movies = session.query(models.Movie).all() for movie in movies: article...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_argsort'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'y_s...
def _argsort(y_score, k=None): ranks = y_score.argsort() argsort = ranks[::-1] if k is not None: argsort = argsort[0:k] return argsort
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'formula'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'mol'}, {'...
def formula(mol): mol.require("Valence") mol.require("Topology") total_cntr = Counter() for m in sorted(mols_iter(mol), key=len, reverse=True): cntr = Counter() for i in m: cntr += mol.atom(i).composition() text = [] Cs = cntr.pop("C", 0) if Cs: ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_start_action_for_section'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': ...
def _start_action_for_section(self, section): if section == "configuration": return Global.LOGGER.debug("starting actions for section " + section) action_configuration = Global.CONFIG_MANAGER.sections[ section] if len(action_configuration) == 0: Global...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_completion'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children...
def check_completion(task, mark_incomplete=False, clear=False, return_stats=False): to_clear = dict() is_complete, stats = _check_completion(task, mark_incomplete=mark_incomplete, clear=clear, ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_connection_string'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], ...
def get_connection_string(params, hide_password=True): connection_string = params['driver'] + '://' user = params.get('user', None) password = params.get('password', None) host = params.get('host', None) port = params.get('port', None) database = params.get('database', No...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'movie_network'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '14', '20', '28', '...
def movie_network(): template = jenv.get_template("movie_network.html") context = dict() cl = client.get_client() session = cl.create_session() query = session.query(models.Movie.id, models.Movie.name, models.Movie.url, mo...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'better_exchook'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16']}; {'id': '4', 'type': 'identif...
def better_exchook(etype, value, tb, debugshell=False, autodebugshell=True, file=None, with_color=None): if file is None: file = sys.stderr def output(ln): file.write(ln + "\n") color = Color(enable=with_color) output(color("EXCEPTION", color.fg_colors[1], bold=True)) all_locals, all...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dump_all_thread_tracebacks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'ch...
def dump_all_thread_tracebacks(exclude_thread_ids=None, file=None): if exclude_thread_ids is None: exclude_thread_ids = [] if not file: file = sys.stdout import threading if hasattr(sys, "_current_frames"): print("", file=file) threads = {t.ident: t for t in threading.enu...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_main'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '160', '210', '235', '272',...
def _main(): if sys.argv[1:] == ["test"]: for k, v in sorted(globals().items()): if not k.startswith("test_"): continue print("running: %s()" % k) v() print("ok.") sys.exit() elif sys.argv[1:] == ["debug_shell"]: debug_shell(loc...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'mol_supplier'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
def mol_supplier(lines, no_halt, assign_descriptors): def sdf_block(lns): mol = [] opt = [] is_mol = True for line in lns: if line.startswith("$$$$"): yield mol[:], opt[:] is_mol = True mol.clear() opt.clear(...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'render_diagram'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'child...
def render_diagram(root_task, out_base, max_param_len=20, horizontal=False, colored=False): import re import codecs import subprocess from ozelot import config from ozelot.etl.tasks import get_task_name, get_task_param_string lines = [u"digraph G {"] if horizontal: lines.append(u"ran...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'binarize'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']}; {'id': '4', 'type': 'identifier', ...
def binarize(df, category_classes, all_classes=True, drop=True, astype=None, inplace=True, min_freq=None): if type(category_classes) is not dict: columns = set(category_classes) category_classes = {column: df[column].unique() for column in columns} else: columns = category_c...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_package_docs'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
def find_package_docs(package_dir, skippedNames=None): logger = logging.getLogger(__name__) if skippedNames is None: skippedNames = [] doc_dir = os.path.join(package_dir, 'doc') modules_yaml_path = os.path.join(doc_dir, 'manifest.yaml') if not os.path.exists(modules_yaml_path): raise...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_max_id'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'c...
def get_max_id(cls, session): id_base = None for c in [cls] + list(cls.__bases__): for base_class in c.__bases__: if base_class.__name__ == 'Base': if id_base is None: id_base = c else: ra...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_insert_automodapi_configs'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], ...
def _insert_automodapi_configs(c): c['numpydoc_show_class_members'] = False c['autosummary_generate'] = True c['automodapi_toctreedirnm'] = 'py-api' c['automodsumm_inherited_members'] = True c['autodoc_inherit_docstrings'] = True c['autoclass_content'] = "class" c['autodoc_default_flags'] = ...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_pipelines_lsst_io_configs'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'keyword_separa...
def build_pipelines_lsst_io_configs(*, project_name, copyright=None): sys.setrecursionlimit(2000) c = {} c = _insert_common_sphinx_configs( c, project_name=project_name) c = _insert_html_configs( c, project_name=project_name, short_project_name=project_name) c...
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'event'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10']}; {'id': '4', 'type': 'identifier', 'chil...
def event(self, cuuid, host, euuid, event_data, timestamp, priority): response = None if host in self.encrypted_hosts: logger.debug("Encrypted!") client_key = self.registry[cuuid]["encryption"] else: logger.debug("Not encrypted :<") client_key = No...