sequence stringlengths 492 15.9k | code stringlengths 75 8.58k |
|---|---|
0, module; 0, 1; 1, ERROR; 1, 2; 1, 321; 2, function_definition; 2, 3; 2, 4; 2, 14; 2, 211; 3, function_name:_scan_xgettext_from_files; 4, parameters; 4, 5; 4, 6; 4, 7; 4, 8; 4, 11; 5, identifier:target; 6, identifier:source; 7, identifier:env; 8, default_parameter; 8, 9; 8, 10; 9, identifier:files; 10, None; 11, defau... | def _scan_xgettext_from_files(target, source, env, files=None, path=None):
import re
import SCons.Util
import SCons.Node.FS
if files is None:
return 0
if not SCons.Util.is_List(files):
files = [files]
if path is None:
if 'XGETTEXTPATH' in env:
path = env['XGET... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:build_wxsfile_file_section; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 9; 3, 10; 4, identifier:root; 5, identifier:files; 6, identifier:NAME; 7, identifier:VERSION; 8, identifier:VENDOR; 9, identifier:filename_set; 10, identifier:id_set; ... | def build_wxsfile_file_section(root, files, NAME, VERSION, VENDOR, filename_set, id_set):
root = create_default_directory_layout( root, NAME, VERSION, VENDOR, filename_set )
components = create_feature_dict( files )
factory = Document()
def get_directory( node, dir ):
if dir == '' or no... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 25; 2, function_name:FromReadings; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 13; 3, 16; 3, 19; 3, 22; 4, identifier:cls; 5, identifier:uuid; 6, identifier:readings; 7, identifier:events; 8, default_parameter; 8, 9; 8, 10; 9, identifier:report_id; 10, attribu... | def FromReadings(cls, uuid, readings, events, report_id=IOTileReading.InvalidReadingID,
selector=0xFFFF, streamer=0x100, sent_timestamp=0, received_time=None):
lowest_id = IOTileReading.InvalidReadingID
highest_id = IOTileReading.InvalidReadingID
for item in itertools.chain(... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_object_instance_content; 3, parameters; 3, 4; 4, identifier:obj; 5, block; 5, 6; 5, 12; 5, 19; 5, 39; 5, 45; 5, 57; 5, 69; 5, 88; 5, 138; 5, 144; 5, 165; 5, 173; 5, 195; 5, 201; 5, 205; 5, 227; 5, 234; 5, 241; 5, 248; 5, 255; 5, 262; 5, 269; 5... | def _object_instance_content(obj):
retval = bytearray()
if obj is None:
return b'N.'
if isinstance(obj, SCons.Util.BaseStringTypes):
return SCons.Util.to_bytes(obj)
inst_class = obj.__class__
inst_class_name = bytearray(obj.__class__.__name__,'utf-8')
inst_class_module = bytearra... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:execute; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 4, identifier:self; 5, identifier:target; 6, identifier:source; 7, identifier:env; 8, default_parameter; 8, 9; 8, 10; 9, identifier:executor; 10, None; 11, block; 11, 12; 11, 20; 11, 28; 11... | def execute(self, target, source, env, executor=None):
escape_list = SCons.Subst.escape_list
flatten_sequence = SCons.Util.flatten_sequence
try:
shell = env['SHELL']
except KeyError:
raise SCons.Errors.UserError('Missing SHELL construction variable.')
try:... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:_try_load_module; 3, parameters; 3, 4; 3, 5; 4, identifier:path; 5, default_parameter; 5, 6; 5, 7; 6, identifier:import_name; 7, None; 8, block; 8, 9; 8, 18; 8, 22; 8, 50; 8, 63; 8, 72; 8, 95; 8, 108; 8, 124; 8, 143; 9, expression_statement; 9,... | def _try_load_module(path, import_name=None):
logger = logging.getLogger(__name__)
obj_name = None
if len(path) > 2 and ':' in path[2:]:
path, _, obj_name = path.rpartition(":")
folder, basename = os.path.split(path)
if folder == '':
folder = './'
if basename == '' or not os.path... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 21; 2, function_name:load_extensions; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 4, identifier:self; 5, identifier:group; 6, default_parameter; 6, 7; 6, 8; 7, identifier:name_filter; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:comp... | def load_extensions(self, group, name_filter=None, comp_filter=None, class_filter=None, product_name=None, unique=False):
found_extensions = []
if product_name is not None:
for comp in self.iter_components():
if comp_filter is not None and comp.name != comp_filter:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 18; 2, function_name:load_extension; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 4, identifier:self; 5, identifier:path; 6, default_parameter; 6, 7; 6, 8; 7, identifier:name_filter; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:class_filter;... | def load_extension(self, path, name_filter=None, class_filter=None, unique=False, component=None):
import_name = None
if component is not None:
import_name = _ensure_package_loaded(path, component)
name, ext = _try_load_module(path, import_name=import_name)
if name_filter is ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:solutionEmitter; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:target; 5, identifier:source; 6, identifier:env; 7, block; 7, 8; 7, 21; 7, 39; 7, 48; 7, 56; 7, 326; 8, if_statement; 8, 9; 8, 16; 9, comparison_operator:==; 9, 10; 9, 13; 10, subs... | def solutionEmitter(target, source, env):
if source[0] == target[0]:
source = []
(base, suff) = SCons.Util.splitext(str(target[0]))
suff = env.subst('$MSVSSOLUTIONSUFFIX')
target[0] = base + suff
if not source:
source = 'sln_inputs:'
if 'name' in env:
if SCons.Uti... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:process_message; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:message; 6, default_parameter; 6, 7; 6, 8; 7, identifier:wait; 8, True; 9, block; 9, 10; 9, 20; 9, 24; 9, 153; 10, expression_statement; 10, 11; 11, assignment;... | async def process_message(self, message, wait=True):
to_check = deque([self._waiters])
ignored = True
while len(to_check) > 0:
context = to_check.popleft()
waiters = context.get(OperationManager._LEAF, [])
for waiter in waiters:
if isinstance(w... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:compile; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:values; 6, block; 6, 7; 6, 19; 6, 31; 6, 43; 6, 56; 6, 60; 6, 76; 6, 107; 6, 122; 6, 193; 7, function_definition; 7, 8; 7, 9; 7, 11; 8, function_name:is_international; 9, par... | def compile(self, values):
def is_international(tag):
return tag.endswith('_')
def get_country_code(tag):
return tag[-2:]
def strip_country_code(tag):
return tag[:-2]
replacements = list(self.tagset.items())
str = ""
domestic = [t for t... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 29; 2, function_name:FromReadings; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 12; 3, 15; 3, 20; 3, 23; 3, 26; 4, identifier:cls; 5, identifier:uuid; 6, identifier:readings; 7, default_parameter; 7, 8; 7, 9; 8, identifier:root_key; 9, attribute; 9, 10; 9, 11; 10, id... | def FromReadings(cls, uuid, readings, root_key=AuthProvider.NoKey, signer=None,
report_id=IOTileReading.InvalidReadingID, selector=0xFFFF, streamer=0, sent_timestamp=0):
lowest_id = IOTileReading.InvalidReadingID
highest_id = IOTileReading.InvalidReadingID
report_len = 20 + ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:format_snippet; 3, parameters; 3, 4; 4, identifier:sensor_graph; 5, block; 5, 6; 5, 10; 5, 17; 5, 24; 5, 31; 5, 51; 5, 105; 5, 145; 5, 152; 5, 159; 5, 170; 5, 181; 5, 220; 5, 227; 5, 234; 5, 304; 5, 311; 5, 318; 6, expression_statement; 6, 7; 7... | def format_snippet(sensor_graph):
output = []
output.append("disable")
output.append("clear")
output.append("reset")
for node in sensor_graph.dump_nodes():
output.append('add_node "{}"'.format(node))
for streamer in sensor_graph.streamers:
line = "add_streamer '{}' '{}' {} {} {}"... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_process_scan_event; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:response; 6, block; 6, 7; 6, 13; 6, 22; 6, 28; 6, 44; 6, 70; 6, 98; 6, 104; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:payload; 10, ... | def _process_scan_event(self, response):
payload = response.payload
length = len(payload) - 10
if length < 0:
return
rssi, packet_type, sender, _addr_type, _bond, data = unpack("<bB6sBB%ds" % length, payload)
string_address = ':'.join([format(x, "02X") for x in bytear... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:_check_ver_range; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:version; 6, identifier:ver_range; 7, block; 7, 8; 7, 16; 7, 27; 7, 51; 7, 75; 7, 133; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 15; 10, pattern_l... | def _check_ver_range(self, version, ver_range):
lower, upper, lower_inc, upper_inc = ver_range
if lower is None and upper is None:
return True
if lower is not None:
if lower_inc and version < lower:
return False
elif not lower_inc and version <... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:is_LaTeX; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:flist; 5, identifier:env; 6, identifier:abspath; 7, block; 7, 8; 7, 17; 7, 25; 7, 49; 7, 76; 7, 91; 7, 246; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 11; 10, identifier:save... | def is_LaTeX(flist,env,abspath):
savedpath = modify_env_var(env, 'TEXINPUTS', abspath)
paths = env['ENV']['TEXINPUTS']
if SCons.Util.is_List(paths):
pass
else:
paths = paths.split(os.pathsep)
if savedpath is _null:
try:
del env['ENV']['TEXINPUTS']
except K... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:processDefines; 3, parameters; 3, 4; 4, identifier:defs; 5, block; 5, 6; 5, 250; 6, if_statement; 6, 7; 6, 15; 6, 179; 6, 240; 7, call; 7, 8; 7, 13; 8, attribute; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:SCons; 11, identifier:Uti... | def processDefines(defs):
if SCons.Util.is_List(defs):
l = []
for d in defs:
if d is None:
continue
elif SCons.Util.is_List(d) or isinstance(d, tuple):
if len(d) >= 2:
l.append(str(d[0]) + '=' + str(d[1]))
el... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:local_services; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 24; 6, if_statement; 6, 7; 6, 15; 7, not_operator; 7, 8; 8, call; 8, 9; 8, 14; 9, attribute; 9, 10; 9, 13; 10, attribute; 10, 11; 10, 12; 11, identifier:self; 12, ident... | def local_services(self):
if not self._loop.inside_loop():
self._state_lock.acquire()
try:
return sorted([(index, name) for index, name in self._name_map.items()], key=lambda element: element[0])
finally:
if not self._loop.inside_loop():
self._... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:generate; 3, parameters; 3, 4; 4, identifier:env; 5, block; 5, 6; 5, 14; 5, 22; 5, 30; 5, 187; 5, 219; 5, 234; 5, 274; 5, 314; 5, 322; 5, 330; 5, 343; 5, 350; 5, 357; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:CLVar... | def generate(env):
CLVar = SCons.Util.CLVar
Action = SCons.Action.Action
Builder = SCons.Builder.Builder
env.SetDefault(QTDIR = _detect(env),
QT_BINPATH = os.path.join('$QTDIR', 'bin'),
QT_CPPPATH = os.path.join('$QTDIR', 'include'),
QT_LIBPATH =... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:emit_rmic_classes; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:target; 5, identifier:source; 6, identifier:env; 7, block; 7, 8; 7, 18; 7, 27; 7, 65; 7, 78; 7, 103; 7, 107; 7, 214; 7, 219; 7, 236; 7, 240; 7, 297; 8, expression_statement; 8, 9... | def emit_rmic_classes(target, source, env):
class_suffix = env.get('JAVACLASSSUFFIX', '.class')
classdir = env.get('JAVACLASSDIR')
if not classdir:
try:
s = source[0]
except IndexError:
classdir = '.'
else:
try:
classdir = s.attribu... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_probe_services; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:handle; 6, block; 6, 7; 6, 11; 6, 52; 6, 93; 6, 107; 6, 130; 6, 142; 6, 151; 6, 162; 6, 175; 6, 188; 6, 200; 6, 206; 6, 219; 6, 241; 6, 245; 6, 255; 7, expression_sta... | def _probe_services(self, handle):
code = 0x2800
def event_filter_func(event):
if (event.command_class == 4 and event.command == 2):
event_handle, = unpack("B", event.payload[0:1])
return event_handle == handle
return False
def end_filter_f... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 12; 2, function_name:_write_handle; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 9; 4, identifier:self; 5, identifier:conn; 6, identifier:handle; 7, identifier:ack; 8, identifier:value; 9, default_parameter; 9, 10; 9, 11; 10, identifier:timeout; 11, float:1.0; ... | def _write_handle(self, conn, handle, ack, value, timeout=1.0):
conn_handle = conn
char_handle = handle
def write_handle_acked(event):
if event.command_class == 4 and event.command == 1:
conn, _, char = unpack("<BHH", event.payload)
return conn_handle ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:build_specfiles; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:source; 5, identifier:target; 6, identifier:env; 7, block; 7, 8; 7, 12; 7, 70; 7, 78; 7, 103; 7, 117; 7, 155; 7, 200; 7, 217; 7, 231; 8, expression_statement; 8, 9; 9, assignment; ... | def build_specfiles(source, target, env):
opened_files={}
def open_file(needle, haystack):
try:
return opened_files[needle]
except KeyError:
file=filter(lambda x: x.get_path().rfind(needle)!=-1, haystack)[0]
opened_files[needle]=open(file.get_abspath(), 'w')
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:emit_java_headers; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:target; 5, identifier:source; 6, identifier:env; 7, block; 7, 8; 7, 18; 7, 27; 7, 65; 7, 78; 7, 103; 7, 107; 7, 219; 7, 229; 7, 247; 7, 358; 8, expression_statement; 8, 9; 9, ass... | def emit_java_headers(target, source, env):
class_suffix = env.get('JAVACLASSSUFFIX', '.class')
classdir = env.get('JAVACLASSDIR')
if not classdir:
try:
s = source[0]
except IndexError:
classdir = '.'
else:
try:
classdir = s.attribu... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:_parse_resource_usage; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:cls; 5, identifier:action_dict; 6, identifier:declarations; 7, block; 7, 8; 7, 18; 7, 36; 7, 54; 7, 58; 7, 163; 7, 187; 7, 207; 7, 227; 8, expression_statement; 8, 9; 9, assi... | def _parse_resource_usage(cls, action_dict, declarations):
raw_used = action_dict.pop('use', [])
opened = [x.strip() for x in action_dict.pop('open_before', [])]
closed = [x.strip() for x in action_dict.pop('close_after', [])]
used = {}
for resource in raw_used:
if 'a... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:format_script; 3, parameters; 3, 4; 4, identifier:sensor_graph; 5, block; 5, 6; 5, 10; 5, 23; 5, 35; 5, 47; 5, 69; 5, 88; 5, 129; 5, 141; 5, 150; 5, 212; 5, 223; 5, 234; 5, 254; 5, 261; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; ... | def format_script(sensor_graph):
records = []
records.append(SetGraphOnlineRecord(False, address=8))
records.append(ClearDataRecord(address=8))
records.append(ResetGraphRecord(address=8))
for node in sensor_graph.nodes:
records.append(AddNodeRecord(str(node), address=8))
for streamer in ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:push; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:stream; 6, identifier:reading; 7, block; 7, 8; 7, 17; 7, 27; 7, 134; 7, 166; 7, 188; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 11; 10, identifier:reading; 11... | def push(self, stream, reading):
reading = copy.copy(reading)
reading.stream = stream.encode()
if stream.buffered:
output_buffer = stream.output
if self.id_assigner is not None:
reading.reading_id = self.id_assigner(stream, reading)
try:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:inspect_last; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:stream; 6, default_parameter; 6, 7; 6, 8; 7, identifier:only_allocated; 8, False; 9, block; 9, 10; 9, 48; 9, 61; 10, if_statement; 10, 11; 10, 12; 11, identifier:o... | def inspect_last(self, stream, only_allocated=False):
if only_allocated:
found = False
for walker in self._virtual_walkers:
if walker.matches(stream):
found = True
break
if not found:
raise UnresolvedIden... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:_dllEmitter; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:target; 5, identifier:source; 6, identifier:env; 7, identifier:paramtp; 8, block; 8, 9; 8, 20; 8, 24; 8, 28; 8, 43; 8, 53; 8, 75; 8, 84; 8, 124; 8, 145; 8, 188; 8, 231; 8, 276; 8... | def _dllEmitter(target, source, env, paramtp):
SCons.Tool.msvc.validate_vars(env)
extratargets = []
extrasources = []
dll = env.FindIxes(target, '%sPREFIX' % paramtp, '%sSUFFIX' % paramtp)
no_import_lib = env.get('no_import_lib', 0)
if not dll:
raise SCons.Errors.UserError('A shared libr... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:setup_environment; 3, parameters; 3, 4; 3, 5; 4, identifier:chip; 5, default_parameter; 5, 6; 5, 7; 6, identifier:args_file; 7, None; 8, block; 8, 9; 8, 15; 8, 56; 8, 62; 8, 68; 8, 74; 8, 80; 8, 90; 8, 96; 8, 102; 8, 108; 8, 114; 8, 120; 8, 126... | def setup_environment(chip, args_file=None):
config = ConfigManager()
if platform.system() == 'Windows':
env = Environment(tools=['mingw'], ENV=os.environ)
else:
env = Environment(tools=['default'], ENV=os.environ)
env['INCPREFIX'] = '-I"'
env['INCSUFFIX'] = '"'
env['CPPDEFPREFIX... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:fastqRead; 3, parameters; 3, 4; 4, identifier:fileHandleOrFile; 5, block; 5, 6; 5, 13; 5, 21; 5, 208; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:fileHandle; 9, call; 9, 10; 9, 11; 10, identifier:_getFileHandle; 11, ... | def fastqRead(fileHandleOrFile):
fileHandle = _getFileHandle(fileHandleOrFile)
line = fileHandle.readline()
while line != '':
if line[0] == '@':
name = line[1:-1]
seq = fileHandle.readline()[:-1]
plus = fileHandle.readline()
if plus[0] != '+':
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:newickTreeParser; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 9; 3, 12; 4, identifier:newickTree; 5, default_parameter; 5, 6; 5, 7; 6, identifier:defaultDistance; 7, identifier:DEFAULT_DISTANCE; 8, line_continuation:\; 9, default_parameter; 9, 10; 9, ... | def newickTreeParser(newickTree, defaultDistance=DEFAULT_DISTANCE, \
sortNonBinaryNodes=False, reportUnaryNodes=False):
newickTree = newickTree.replace("(", " ( ")
newickTree = newickTree.replace(")", " ) ")
newickTree = newickTree.replace(":", " : ")
newickTree = newickTree.replace... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:parse_iptables_rule; 3, parameters; 3, 4; 4, identifier:line; 5, block; 5, 6; 5, 8; 5, 16; 5, 20; 5, 24; 5, 28; 5, 32; 5, 90; 5, 154; 5, 161; 5, 177; 6, expression_statement; 6, 7; 7, string:'''
Parse one iptables rule. Returns a dict where... | def parse_iptables_rule(line):
'''
Parse one iptables rule. Returns a dict where each iptables code argument
is mapped to a name using IPTABLES_ARGS.
'''
bits = line.split()
definition = {}
key = None
args = []
not_arg = False
def add_args():
arg_string = ' '.join(args)
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 20; 2, function_name:make_command; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:command; 5, default_parameter; 5, 6; 5, 7; 6, identifier:env; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:su_user; 10, None; 11, default_parameter;... | def make_command(
command,
env=None,
su_user=None,
sudo=False,
sudo_user=None,
preserve_sudo_env=False,
):
'''
Builds a shell command with various kwargs.
'''
debug_meta = {}
for key, value in (
('sudo', sudo),
('sudo_user', sudo_user),
('su_user', su_... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:read_buffer; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:io; 5, default_parameter; 5, 6; 5, 7; 6, identifier:print_output; 7, False; 8, default_parameter; 8, 9; 8, 10; 9, identifier:print_func; 10, None; 11, block; 11, 12; 11, 14; 11, 55; 1... | def read_buffer(io, print_output=False, print_func=None):
'''
Reads a file-like buffer object into lines and optionally prints the output.
'''
def _print(line):
if print_output:
if print_func:
formatted_line = print_func(line)
else:
formatt... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 23; 2, function_name:download; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 4, identifier:state; 5, identifier:host; 6, identifier:source_url; 7, identifier:destination; 8, default_parameter; 8, 9; 8, 10; 9, identifier:user; 10, None; 1... | def download(
state, host, source_url, destination,
user=None, group=None, mode=None, cache_time=None, force=False,
):
'''
Download files from remote locations.
+ source_url: source URl of the file
+ destination: where to save the file
+ user: user to own the files
+ group: group to own ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 29; 2, function_name:sync; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 4, identifier:state; 5, identifier:host; 6, identifier:source; 7, identifier:destination; 8, default_parameter; 8, 9; 8, 10; 9, identifier:user; 10, N... | def sync(
state, host, source, destination,
user=None, group=None, mode=None, delete=False,
exclude=None, exclude_dir=None, add_deploy_dir=True,
):
'''
Syncs a local directory with a remote one, with delete support. Note that delete will
remove extra files on the remote side, but not extra direc... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 20; 2, function_name:put; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:state; 5, identifier:host; 6, identifier:local_filename; 7, identifier:remote_filename; 8, default_parameter; 8, 9; 8, 10; 9, identifier:user; 10, None; 11, d... | def put(
state, host, local_filename, remote_filename,
user=None, group=None, mode=None, add_deploy_dir=True,
):
'''
Copy a local file to the remote system.
+ local_filename: local filename
+ remote_filename: remote filename
+ user: user to own the files
+ group: group to own the files
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_run_single_op; 3, parameters; 3, 4; 3, 5; 4, identifier:state; 5, identifier:op_hash; 6, block; 6, 7; 6, 9; 6, 17; 6, 21; 6, 33; 6, 45; 6, 108; 6, 114; 6, 300; 6, 313; 7, expression_statement; 7, 8; 8, string:'''
Run a single operation for... | def _run_single_op(state, op_hash):
'''
Run a single operation for all servers. Can be configured to run in serial.
'''
op_meta = state.op_meta[op_hash]
op_types = []
if op_meta['serial']:
op_types.append('serial')
if op_meta['run_once']:
op_types.append('run once')
logge... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:send; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 45; 5, 67; 6, if_statement; 6, 7; 6, 11; 6, 18; 7, not_operator; 7, 8; 8, attribute; 8, 9; 8, 10; 9, identifier:self; 10, identifier:_receive_has_been_called; 11, block; 11, 12; ... | def send(self):
if not self._receive_has_been_called:
all_addrs = self._dest_addrs
else:
all_addrs = [a for (i, a) in list(self._id_to_addr.items())
if i in self._remaining_ids]
if self._last_used_id is None:
self._last_used_id = int(t... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_parse; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:registers; 6, block; 6, 7; 6, 19; 6, 38; 6, 52; 6, 62; 6, 85; 6, 95; 6, 119; 6, 132; 6, 143; 6, 155; 6, 161; 6, 171; 6, 177; 6, 185; 6, 224; 6, 237; 6, 247; 6, 253; 6, 263; 6,... | def _parse(self, registers):
result = {'ip': self.ip, 'connected': True}
decoder = BinaryPayloadDecoder.fromRegisters(registers,
byteorder=Endian.Big,
wordorder=Endian.Little)
b = [decoder.d... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:ParseCFlags; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:start_line; 7, integer:0; 8, block; 8, 9; 8, 13; 8, 17; 8, 21; 8, 217; 9, expression_statement; 9, 10; 10, assignment; 10, 11; 10, 12; 1... | def ParseCFlags(self, start_line=0):
modname = None
modlist = []
flag = None
for line_num in range(start_line, len(self.output)):
line = self.output[line_num].rstrip()
if not line:
if flag:
modlist.append(flag)
flag = None
continue
mobj = self.module... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 12; 2, function_name:DEFINE_alias; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 4, identifier:name; 5, identifier:original_name; 6, default_parameter; 6, 7; 6, 8; 7, identifier:flag_values; 8, identifier:FLAGS; 9, default_parameter; 9, 10; 9, 11; 10, identifier:module_n... | def DEFINE_alias(name, original_name, flag_values=FLAGS, module_name=None):
if original_name not in flag_values:
raise UnrecognizedFlagError(original_name)
flag = flag_values[original_name]
class _Parser(ArgumentParser):
def parse(self, argument):
flag.parse(argument)
return flag.value
class... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 20; 2, function_name:acquire; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:cls; 5, default_parameter; 5, 6; 5, 7; 6, identifier:name; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:lifetime; 10, None; 11, default_parameter; 11, 12... | def acquire(cls, name=None, lifetime=None, mechs=None, usage='both',
store=None):
if store is None:
res = rcreds.acquire_cred(name, lifetime,
mechs, usage)
else:
if rcred_cred_store is None:
raise NotImplemente... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 20; 2, function_name:store; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:store; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:usage; 10, string:'both'; 11, default_parameter; ... | def store(self, store=None, usage='both', mech=None,
overwrite=False, set_default=False):
if store is None:
if rcred_rfc5588 is None:
raise NotImplementedError("Your GSSAPI implementation does "
"not have support for RFC 5588")
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 22; 2, function_name:add; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 10; 3, 13; 3, 16; 3, 19; 4, identifier:self; 5, identifier:name; 6, identifier:mech; 7, default_parameter; 7, 8; 7, 9; 8, identifier:usage; 9, string:'both'; 10, default_parameter; 10, 11; 10, 12;... | def add(self, name, mech, usage='both',
init_lifetime=None, accept_lifetime=None, impersonator=None,
store=None):
if store is not None and impersonator is not None:
raise ValueError('You cannot use both the `impersonator` and '
'`store` arguments ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 107; 2, function_name:velocity_graph; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 3, 38; 3, 41; 3, 44; 3, 47; 3, 50; 3, 53; 3, 56; 3, 59; 3, 62; 3, 65; 3, 68; 3, 71; 3, 74; 3, 77; 3, 80; 3, 83; 3, 86; 3, 89; 3, 9... | def velocity_graph(adata, basis=None, vkey='velocity', which_graph='velocity', n_neighbors=10,
alpha=.8, perc=90, edge_width=.2, edge_color='grey', color=None, use_raw=None, layer=None,
color_map=None, colorbar=True, palette=None, size=None, sort_order=True, groups=None,
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 14; 2, function_name:cleanup; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:clean; 7, string:'layers'; 8, default_parameter; 8, 9; 8, 10; 9, identifier:keep; 10, None; 11, default_parameter; 11, 12; 11,... | def cleanup(data, clean='layers', keep=None, copy=False):
adata = data.copy() if copy else data
keep = list([keep]) if isinstance(keep, str) else list() if keep is None else list(keep)
keep.extend(['spliced', 'unspliced', 'Ms', 'Mu', 'clusters', 'neighbors'])
ann_dict = {'obs': adata.obs_keys(), 'var': ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 38; 2, function_name:filter_genes; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:min_counts; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identi... | def filter_genes(data, min_counts=None, min_cells=None, max_counts=None, max_cells=None,
min_counts_u=None, min_cells_u=None, max_counts_u=None, max_cells_u=None,
min_shared_counts=None, min_shared_cells=None, copy=False):
adata = data.copy() if copy else data
set_initial_size... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 32; 2, function_name:filter_genes_dispersion; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:flavor; 7, string:'seurat'; 8, default_parameter; 8, 9; 8, 10; 9, id... | def filter_genes_dispersion(data, flavor='seurat', min_disp=None, max_disp=None, min_mean=None, max_mean=None,
n_bins=20, n_top_genes=None, log=True, copy=False):
adata = data.copy() if copy else data
set_initial_size(adata)
if n_top_genes is not None and adata.n_vars < n_top_gen... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 31; 2, function_name:normalize_per_cell; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 25; 3, 28; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:counts_per_cell_after; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier... | def normalize_per_cell(data, counts_per_cell_after=None, counts_per_cell=None, key_n_counts=None,
max_proportion_per_cell=None, use_initial_size=True, layers=['spliced', 'unspliced'],
enforce=False, copy=False):
adata = data.copy() if copy else data
layers = adata.l... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 35; 2, function_name:filter_and_normalize; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:min_counts; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, ident... | def filter_and_normalize(data, min_counts=None, min_counts_u=None, min_cells=None, min_cells_u=None,
min_shared_counts=None, min_shared_cells=None, n_top_genes=None, flavor='seurat', log=True,
copy=False):
adata = data.copy() if copy else data
if 'spliced' not i... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:merge; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:adata; 5, identifier:ldata; 6, default_parameter; 6, 7; 6, 8; 7, identifier:copy; 8, True; 9, block; 9, 10; 9, 62; 9, 75; 9, 88; 9, 119; 9, 199; 9, 229; 9, 254; 9, 276; 9, 298; 9, 320; 9, 34... | def merge(adata, ldata, copy=True):
if 'spliced' in ldata.layers.keys() and 'initial_size_spliced' not in ldata.obs.keys(): set_initial_size(ldata)
elif 'spliced' in adata.layers.keys() and 'initial_size_spliced' not in adata.obs.keys(): set_initial_size(adata)
common_obs = adata.obs_names.intersection(ldat... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 20; 2, function_name:cell_fate; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:groupby; 7, string:'clusters'; 8, default_parameter; 8, 9; 8, 10; 9, identifier:disconnected_groups; 10, None;... | def cell_fate(data, groupby='clusters', disconnected_groups=None, self_transitions=False, n_neighbors=None, copy=False):
adata = data.copy() if copy else data
logg.info('computing cell fates', r=True)
n_neighbors = 10 if n_neighbors is None else n_neighbors
_adata = adata.copy()
vgraph = VelocityGra... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 32; 2, function_name:moments; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 4, identifier:data; 5, default_parameter; 5, 6; 5, 7; 6, identifier:n_neighbors; 7, integer:30; 8, default_parameter; 8, 9; 8, 10; 9, identifier:n_pcs; ... | def moments(data, n_neighbors=30, n_pcs=30, mode='connectivities', method='umap', metric='euclidean', use_rep=None,
recurse_neighbors=False, renormalize=False, copy=False):
adata = data.copy() if copy else data
if 'spliced' not in adata.layers.keys() or 'unspliced' not in adata.layers.keys():
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 41; 2, function_name:transition_matrix; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 3, 38; 4, identifier:adata; 5, default_parameter; 5, 6; 5, 7; 6, identifier:vkey; 7, string:'velocity'; 8, default_parameter; 8,... | def transition_matrix(adata, vkey='velocity', basis=None, backward=False, self_transitions=True, scale=10, perc=None,
use_negative_cosines=False, weight_diffusion=0, scale_diffusion=1, weight_indirect_neighbors=None,
n_neighbors=None, vgraph=None):
if vkey+'_graph' not in... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:update_holder; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:holder; 6, block; 6, 7; 6, 15; 6, 176; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:subject_symbol; 10, attribute; 10, 11; 10, 14; 11, attri... | def update_holder(self, holder):
subject_symbol = self.subject.symbol
if subject_symbol in holder.state:
if not holder.state[subject_symbol]['quantity']:
holder.state[subject_symbol]['value'] = self.details['value']
elif same_sign(
holder.state... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:addImagingColumns; 3, parameters; 3, 4; 3, 5; 4, identifier:msname; 5, default_parameter; 5, 6; 5, 7; 6, identifier:ack; 7, True; 8, block; 8, 9; 8, 14; 8, 27; 8, 35; 8, 53; 8, 57; 8, 89; 8, 109; 8, 160; 8, 211; 8, 331; 8, 349; 8, 364; 8, 373; ... | def addImagingColumns(msname, ack=True):
import numpy as np
t = table(msname, readonly=False, ack=False)
cnames = t.colnames()
try:
cdesc = t.getcoldesc('DATA')
except:
raise ValueError('Column DATA does not exist')
hasTiled = False
try:
dminfo = t.getdminfo("DATA")
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:msregularize; 3, parameters; 3, 4; 3, 5; 4, identifier:msname; 5, identifier:newname; 6, block; 6, 7; 6, 14; 6, 23; 6, 27; 6, 252; 6, 307; 6, 314; 6, 322; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:t; 10, call; 10,... | def msregularize(msname, newname):
t = table(msname)
t1 = t.sort('unique ANTENNA1,ANTENNA2')
nadded = 0
for tsub in t.iter(['TIME', 'DATA_DESC_ID']):
nmissing = t1.nrows() - tsub.nrows()
if nmissing < 0:
raise ValueError("A time/band chunk has too many rows")
if nmiss... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 43; 2, function_name:tablefromascii; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 3, 27; 3, 30; 3, 34; 3, 37; 3, 40; 4, identifier:tablename; 5, identifier:asciifile; 6, default_parameter; 6, 7; 6, 8; 7, identifier:headerfile; 8, strin... | def tablefromascii(tablename, asciifile,
headerfile='',
autoheader=False, autoshape=[],
columnnames=[], datatypes=[],
sep=' ',
commentmarker='',
firstline=1, lastline=-1,
readonly=True,
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 27; 2, function_name:makescacoldesc; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 4, identifier:columnname; 5, identifier:value; 6, default_parameter; 6, 7; 6, 8; 7, identifier:datamanagertype; 8, string:''; 9, default_parameter; 9, 10... | def makescacoldesc(columnname, value,
datamanagertype='',
datamanagergroup='',
options=0, maxlen=0, comment='',
valuetype='', keywords={}):
vtype = valuetype
if vtype == '':
vtype = _value_type_name(value)
rec2 = {'valueType... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 33; 2, function_name:makearrcoldesc; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 3, 27; 3, 30; 4, identifier:columnname; 5, identifier:value; 6, default_parameter; 6, 7; 6, 8; 7, identifier:ndim; 8, integer:0; 9, default_parameter; 9,... | def makearrcoldesc(columnname, value, ndim=0,
shape=[], datamanagertype='',
datamanagergroup='',
options=0, maxlen=0, comment='',
valuetype='', keywords={}):
vtype = valuetype
if vtype == '':
vtype = _value_type_name(value)
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:makedminfo; 3, parameters; 3, 4; 3, 5; 4, identifier:tabdesc; 5, default_parameter; 5, 6; 5, 7; 6, identifier:group_spec; 7, None; 8, block; 8, 9; 8, 18; 8, 46; 8, 53; 8, 179; 9, if_statement; 9, 10; 9, 13; 10, comparison_operator:is; 10, 11; 1... | def makedminfo(tabdesc, group_spec=None):
if group_spec is None:
group_spec = {}
class DMGroup(object):
def __init__(self):
self.columns = []
self.type = None
self.spec = None
dm_groups = defaultdict(DMGroup)
for c, d in six.iteritems(tabdesc):
if c in ('_define_hypercolumn_', '_ke... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 10; 2, function_name:attrgetrow; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:groupname; 6, identifier:key; 7, default_parameter; 7, 8; 7, 9; 8, identifier:value; 9, None; 10, block; 10, 11; 10, 27; 10, 38; 10, 64; 10, 90; 11, if_statem... | def attrgetrow(self, groupname, key, value=None):
if not isinstance(key, str):
return self._attrgetrow(groupname, key)
rownrs = self.attrfindrows(groupname, key, value)
if len(rownrs) == 0:
raise IndexError("Image attribute " + key + " in group " +
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 14; 2, function_name:substitute; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 4, identifier:s; 5, default_parameter; 5, 6; 5, 7; 6, identifier:objlist; 7, tuple; 8, default_parameter; 8, 9; 8, 10; 9, identifier:globals; 10, dictionary; 11, default_parameter; 11, 12; 11... | def substitute(s, objlist=(), globals={}, locals={}):
if not locals:
locals = getlocals(3)
backslash = False
dollar = False
nparen = 0
name = ''
evalstr = ''
squote = False
dquote = False
out = ''
for tmp in s:
if backslash:
out += tmp
back... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 12; 2, function_name:iter; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 4, identifier:self; 5, identifier:columnnames; 6, default_parameter; 6, 7; 6, 8; 7, identifier:order; 8, string:''; 9, default_parameter; 9, 10; 9, 11; 10, identifier:sort; 11, True; 12, block; 12, ... | def iter(self, columnnames, order='', sort=True):
from .tableiter import tableiter
return tableiter(self, columnnames, order, sort) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:index; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:columnnames; 6, default_parameter; 6, 7; 6, 8; 7, identifier:sort; 8, True; 9, block; 9, 10; 9, 17; 10, import_from_statement; 10, 11; 10, 15; 11, relative_import; 11, 12... | def index(self, columnnames, sort=True):
from .tableindex import tableindex
return tableindex(self, columnnames, sort) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:rownumbers; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:table; 7, None; 8, block; 8, 9; 8, 23; 9, if_statement; 9, 10; 9, 13; 10, comparison_operator:is; 10, 11; 10, 12; 11, identifier:table; 1... | def rownumbers(self, table=None):
if table is None:
return self._rownumbers(Table())
return self._rownumbers(table) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 17; 2, function_name:showstructure; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:dataman; 7, True; 8, default_parameter; 8, 9; 8, 10; 9, identifier:column; 10, True; 11, default_parameter; 11, 1... | def showstructure(self, dataman=True, column=True, subtable=False,
sort=False):
return self._showstructure(dataman, column, subtable, sort) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 26; 2, function_name:query; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:query; 7, string:''; 8, default_parameter; 8, 9; 8, 10; 9, identifier:name; 10, string:''; 11, defau... | def query(self, query='', name='', sortlist='', columns='',
limit=0, offset=0, style='Python'):
if not query and not sortlist and not columns and \
limit <= 0 and offset <= 0:
raise ValueError('No selection done (arguments query, ' +
'sortlist, c... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 18; 2, function_name:sort; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 4, identifier:self; 5, identifier:sortlist; 6, default_parameter; 6, 7; 6, 8; 7, identifier:name; 8, string:''; 9, default_parameter; 9, 10; 9, 11; 10, identifier:limit; 11, integer:0;... | def sort(self, sortlist, name='',
limit=0, offset=0, style='Python'):
command = 'select from $1 orderby ' + sortlist
if limit > 0:
command += ' limit %d' % limit
if offset > 0:
command += ' offset %d' % offset
if name:
command += ' giving ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:browse; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:wait; 7, True; 8, default_parameter; 8, 9; 8, 10; 9, identifier:tempname; 10, string:"/tmp/seltable"; 11, block; 11, 12; 11, 15; 12, i... | def browse(self, wait=True, tempname="/tmp/seltable"):
import os
if os.system('test `which casabrowser`x != x') == 0:
waitstr1 = ""
waitstr2 = "foreground ..."
if not wait:
waitstr1 = " &"
waitstr2 = "background ..."
if self... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:view; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:wait; 7, True; 8, default_parameter; 8, 9; 8, 10; 9, identifier:tempname; 10, string:"/tmp/seltable"; 11, block; 11, 12; 11, 15; 11, 19;... | def view(self, wait=True, tempname="/tmp/seltable"):
import os
viewed = False
type = self.info()["type"]
if type == "Measurement Set" or type == "Image":
if os.system('test -x `which casaviewer` > /dev/null 2>&1') == 0:
waitstr1 = ""
waitstr2 =... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_repr_html_; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 10; 5, 56; 5, 60; 5, 64; 5, 112; 5, 131; 5, 135; 5, 156; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:out; 9, string:"<table class='taqltable' s... | def _repr_html_(self):
out = "<table class='taqltable' style='overflow-x:auto'>\n"
if not(all([colname[:4] == "Col_" for colname in self.colnames()])):
out += "<tr>"
for colname in self.colnames():
out += "<th><b>"+colname+"</b></th>"
out += "</tr>"
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:handle_import; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:name; 6, identifier:compilation; 7, identifier:rule; 8, block; 8, 9; 8, 16; 8, 27; 8, 52; 8, 58; 8, 62; 8, 111; 8, 127; 9, expression_statement; 9, 10; 10, ... | def handle_import(self, name, compilation, rule):
path = PurePosixPath(name)
search_exts = list(compilation.compiler.dynamic_extensions)
if path.suffix and path.suffix in search_exts:
basename = path.stem
else:
basename = path.name
relative_to = path.paren... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:_get_properties; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:rule; 6, identifier:scope; 7, identifier:block; 8, block; 8, 9; 8, 31; 8, 44; 8, 67; 8, 76; 8, 87; 8, 95; 8, 104; 8, 109; 8, 118; 9, expression_statement;... | def _get_properties(self, rule, scope, block):
prop, raw_value = (_prop_split_re.split(block.prop, 1) + [None])[:2]
if raw_value is not None:
raw_value = raw_value.strip()
try:
is_var = (block.prop[len(prop)] == '=')
except IndexError:
is_var = False
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:longest_common_subsequence; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:a; 5, identifier:b; 6, default_parameter; 6, 7; 6, 8; 7, identifier:mergefunc; 8, None; 9, block; 9, 10; 9, 30; 9, 34; 9, 63; 9, 67; 9, 152; 9, 161; 9, 170; 9, 174; 9, 2... | def longest_common_subsequence(a, b, mergefunc=None):
if mergefunc is None:
def mergefunc(a, b):
if a == b:
return a
return None
eq = {}
for ai, aval in enumerate(a):
for bi, bval in enumerate(b):
eq[ai, bi] = mergefunc(aval, bval)
pref... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:determine_encoding; 3, parameters; 3, 4; 4, identifier:buf; 5, block; 5, 6; 5, 10; 5, 16; 5, 84; 5, 105; 5, 147; 5, 217; 5, 226; 5, 235; 5, 324; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:bom_encoding; 9, string:'UT... | def determine_encoding(buf):
bom_encoding = 'UTF-8'
if not buf:
return bom_encoding
if isinstance(buf, six.text_type):
if buf[0] == '\ufeff':
buf = buf[0:]
charset_start = '@charset "'
charset_end = '";'
if buf.startswith(charset_start):
start ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:_draw_surfaces; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:surface; 6, identifier:offset; 7, identifier:surfaces; 8, block; 8, 9; 8, 15; 8, 21; 8, 31; 8, 39; 8, 47; 8, 58; 8, 64; 8, 70; 8, 93; 8, 102; 8, 109; 9, ex... | def _draw_surfaces(self, surface, offset, surfaces):
surface_blit = surface.blit
ox, oy = offset
left, top = self._tile_view.topleft
hit = self._layer_quadtree.hit
get_tile = self.data.get_tile_image
tile_layers = tuple(self.data.visible_tile_layers)
dirty = list(... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:get_tile_images_by_rect; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:rect; 6, block; 6, 7; 6, 36; 6, 47; 6, 55; 6, 63; 6, 69; 6, 75; 6, 81; 6, 90; 7, function_definition; 7, 8; 7, 9; 7, 13; 8, function_name:rev; 9, parameters; ... | def get_tile_images_by_rect(self, rect):
def rev(seq, start, stop):
if start < 0:
start = 0
return enumerate(seq[start:stop + 1], start)
x1, y1, x2, y2 = rect_to_bb(rect)
images = self.tmx.images
layers = self.tmx.layers
at = self._animated... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:describe_pdb; 3, parameters; 3, 4; 4, identifier:pdb_id; 5, block; 5, 6; 5, 16; 5, 23; 5, 34; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:out; 9, call; 9, 10; 9, 11; 10, identifier:get_info; 11, argument_list; 11, 12... | def describe_pdb(pdb_id):
out = get_info(pdb_id, url_root = 'http://www.rcsb.org/pdb/rest/describePDB?structureId=')
out = to_dict(out)
out = remove_at_sign(out['PDBdescription']['PDB'])
return out |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:download_file_from_google_drive; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 4, identifier:file_id; 5, identifier:dest_path; 6, default_parameter; 6, 7; 6, 8; 7, identifier:overwrite; 8, False; 9, default_parameter; 9, 10; 9, 11; 10, identif... | def download_file_from_google_drive(file_id, dest_path, overwrite=False, unzip=False, showsize=False):
destination_directory = dirname(dest_path)
if not exists(destination_directory):
makedirs(destination_directory)
if not exists(dest_path) or overwrite:
session = request... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:server_extensions_handshake; 3, parameters; 3, 4; 3, 5; 4, identifier:requested; 5, identifier:supported; 6, block; 6, 7; 6, 11; 6, 86; 6, 178; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:accepts; 10, dictionary; 11... | def server_extensions_handshake(requested, supported):
accepts = {}
for offer in requested:
name = offer.split(";", 1)[0].strip()
for extension in supported:
if extension.name == name:
accept = extension.accept(offer)
if accept is True:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:listfiles; 3, parameters; 3, 4; 4, identifier:data_name; 5, block; 5, 6; 5, 16; 5, 38; 5, 43; 5, 47; 5, 189; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:data_source; 9, call; 9, 10; 9, 11; 10, identifier:get_data_obj... | def listfiles(data_name):
data_source = get_data_object(data_name, use_data_config=False)
if not data_source:
if 'output' in data_name:
floyd_logger.info("Note: You cannot clone the output of a running job. You need to wait for it to finish.")
sys.exit()
dirs = ['']
paths = [... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 16; 2, function_name:download; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 10; 3, 13; 4, identifier:self; 5, identifier:url; 6, identifier:filename; 7, default_parameter; 7, 8; 7, 9; 8, identifier:relative; 9, False; 10, default_parameter; 10, 11; 10, 12; 11, identi... | def download(self, url, filename, relative=False, headers=None, timeout=5):
request_url = self.base_url + url if relative else url
floyd_logger.debug("Downloading file from url: {}".format(request_url))
request_headers = {}
if self.auth_header:
request_headers["Authorization"... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:get_command_line; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 9; 3, 10; 4, identifier:instance_type; 5, identifier:env; 6, identifier:message; 7, identifier:data; 8, identifier:mode; 9, identifier:open_notebook; 10, identifier:command_str;... | def get_command_line(instance_type, env, message, data, mode, open_notebook, command_str):
floyd_command = ["floyd", "run"]
if instance_type:
floyd_command.append('--' + INSTANCE_NAME_MAP[instance_type])
if env and not env == DEFAULT_ENV:
floyd_command += ["--env", env]
if message:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:restart; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 8; 3, 9; 3, 10; 3, 11; 3, 12; 3, 13; 3, 14; 4, identifier:ctx; 5, identifier:job_name; 6, identifier:data; 7, identifier:open_notebook; 8, identifier:env; 9, identifier:message; 10, identifier... | def restart(ctx, job_name, data, open_notebook, env, message, gpu, cpu, gpup, cpup, command):
if len(env) > 1:
floyd_logger.error(
"You passed more than one environment: {}. Please specify a single environment.".format(env)
)
sys.exit(1)
env = env[0]
parameters = {}
e... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 17; 2, function_name:filter_user; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 4, identifier:user; 5, default_parameter; 5, 6; 5, 7; 6, identifier:using; 7, string:'records'; 8, default_parameter; 8, 9; 8, 10; 9, identifier:interaction; 10, None; 11, default_par... | def filter_user(user, using='records', interaction=None,
part_of_week='allweek', part_of_day='allday'):
if using == 'recharges':
records = user.recharges
else:
records = user.records
if interaction == 'callandtext':
records = filter(
lambda r: ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:infer_type; 3, parameters; 3, 4; 4, identifier:data; 5, block; 5, 6; 5, 22; 5, 31; 5, 95; 6, if_statement; 6, 7; 6, 19; 7, call; 7, 8; 7, 9; 8, identifier:isinstance; 9, argument_list; 9, 10; 9, 11; 10, identifier:data; 11, tuple; 11, 12; 11, 1... | def infer_type(data):
if isinstance(data, (type(None), numbers.Number)):
return 'scalar'
if isinstance(data, SummaryStats):
return 'summarystats'
if hasattr(data, "__len__"):
data = [x for x in data if x is not None]
if len(data) == 0 or isinstance(data[0], numbers.Number):
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 10; 2, function_name:churn_rate; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:user; 5, default_parameter; 5, 6; 5, 7; 6, identifier:summary; 7, string:'default'; 8, dictionary_splat_pattern; 8, 9; 9, identifier:kwargs; 10, block; 10, 11; 10, 29; 10, 59; 10, 67; ... | def churn_rate(user, summary='default', **kwargs):
if len(user.records) == 0:
return statistics([], summary=summary)
query = {
'groupby': 'week',
'divide_by': OrderedDict([
('part_of_week', ['allweek']),
('part_of_day', ['allday'])
]),
'using': 're... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:describe; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 40; 5, 54; 5, 68; 5, 111; 5, 128; 5, 138; 5, 161; 5, 191; 5, 226; 5, 256; 5, 277; 5, 298; 5, 319; 6, function_definition; 6, 7; 6, 8; 6, 11; 7, function_name:format_int; 8, p... | def describe(self):
def format_int(name, n):
if n == 0 or n == 1:
return "%i %s" % (n, name[:-1])
else:
return "%i %s" % (n, name)
empty_box = Colors.OKGREEN + '[ ]' + Colors.ENDC + ' '
filled_box = Colors.OKGREEN + '[x]' + Colors.ENDC + ' ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:matrix_index; 3, parameters; 3, 4; 4, identifier:user; 5, block; 5, 6; 5, 29; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:other_keys; 9, call; 9, 10; 9, 11; 10, identifier:sorted; 11, argument_list; 11, 12; 12, list_... | def matrix_index(user):
other_keys = sorted([k for k in user.network.keys() if k != user.name])
return [user.name] + other_keys |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:clustering_coefficient_weighted; 3, parameters; 3, 4; 3, 5; 4, identifier:user; 5, default_parameter; 5, 6; 5, 7; 6, identifier:interaction; 7, None; 8, block; 8, 9; 8, 19; 8, 34; 8, 44; 8, 51; 8, 55; 8, 130; 8, 146; 9, expression_statement; 9,... | def clustering_coefficient_weighted(user, interaction=None):
matrix = matrix_undirected_weighted(user, interaction=interaction)
weights = [weight for g in matrix for weight in g if weight is not None]
if len(weights) == 0:
return None
max_weight = max(weights)
triplet_weight = 0
for a, b... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:assortativity_indicators; 3, parameters; 3, 4; 4, identifier:user; 5, block; 5, 6; 5, 13; 5, 20; 5, 27; 5, 37; 5, 73; 5, 165; 5, 169; 5, 185; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:matrix; 9, call; 9, 10; 9, 11;... | def assortativity_indicators(user):
matrix = matrix_undirected_unweighted(user)
count_indicator = defaultdict(int)
total_indicator = defaultdict(int)
ego_indics = all(user, flatten=True)
ego_indics = {a: value for a, value in ego_indics.items()
if a != "name" and a[:11] != "reporti... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:assortativity_attributes; 3, parameters; 3, 4; 4, identifier:user; 5, block; 5, 6; 5, 13; 5, 33; 5, 37; 5, 96; 5, 100; 5, 159; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:matrix; 9, call; 9, 10; 9, 11; 10, identifier... | def assortativity_attributes(user):
matrix = matrix_undirected_unweighted(user)
neighbors = [k for k in user.network.keys() if k != user.name]
neighbors_attrbs = {}
for i, u_name in enumerate(matrix_index(user)):
correspondent = user.network.get(u_name, None)
if correspondent is None or ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:network_sampling; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 4, identifier:n; 5, identifier:filename; 6, default_parameter; 6, 7; 6, 8; 7, identifier:directory; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:snowball; 11, False... | def network_sampling(n, filename, directory=None, snowball=False, user=None):
if snowball:
if user is None:
raise ValueError("Must specify a starting user from whom to initiate the snowball")
else:
users, agenda = [user], [user]
while len(agenda) > 0:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 12; 2, function_name:to_csv; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 4, identifier:objects; 5, identifier:filename; 6, default_parameter; 6, 7; 6, 8; 7, identifier:digits; 8, integer:5; 9, default_parameter; 9, 10; 9, 11; 10, identifier:warnings; 11, True; 12, bloc... | def to_csv(objects, filename, digits=5, warnings=True):
if not isinstance(objects, list):
objects = [objects]
data = [flatten(obj) for obj in objects]
all_keys = [d for datum in data for d in datum.keys()]
field_names = sorted(set(all_keys), key=lambda x: all_keys.index(x))
with open(filenam... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 33; 2, function_name:read_csv; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 3, 27; 3, 30; 4, identifier:user_id; 5, identifier:records_path; 6, default_parameter; 6, 7; 6, 8; 7, identifier:antennas_path; 8, None; 9, default_parameter; ... | def read_csv(user_id, records_path, antennas_path=None, attributes_path=None,
recharges_path=None, network=False, duration_format='seconds',
describe=True, warnings=True, errors=False, drop_duplicates=False):
antennas = None
if antennas_path is not None:
try:
with o... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:_conversations; 3, parameters; 3, 4; 3, 5; 4, identifier:group; 5, default_parameter; 5, 6; 5, 7; 6, identifier:delta; 7, call; 7, 8; 7, 11; 8, attribute; 8, 9; 8, 10; 9, identifier:datetime; 10, identifier:timedelta; 11, argument_list; 11, 12... | def _conversations(group, delta=datetime.timedelta(hours=1)):
last_time = None
results = []
for g in group:
if last_time is None or g.datetime - last_time < delta:
if g.interaction == 'text':
results.append(g)
else:
if len(results) != 0:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 18; 2, function_name:fetch; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 4, identifier:cert; 5, identifier:issuer; 6, default_parameter; 6, 7; 6, 8; 7, identifier:hash_algo; 8, string:'sha1'; 9, default_parameter; 9, 10; 9, 11; 10, identifier:nonce; 11, Tr... | def fetch(cert, issuer, hash_algo='sha1', nonce=True, user_agent=None, timeout=10):
if not isinstance(cert, x509.Certificate):
raise TypeError('cert must be an instance of asn1crypto.x509.Certificate, not %s' % type_name(cert))
if not isinstance(issuer, x509.Certificate):
raise TypeError('issuer... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.