sequence stringlengths 492 15.9k | code stringlengths 75 8.58k |
|---|---|
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 32; 2, function_name:usearch_chimera_filter_de_novo; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 4, identifier:fasta_filepath; 5, default_parameter; 5, 6; 5, 7; 6, identifier:output_chimera_filepath; 7, None; 8, default_parame... | def usearch_chimera_filter_de_novo(
fasta_filepath,
output_chimera_filepath=None,
output_non_chimera_filepath=None,
abundance_skew=2.0,
log_name="uchime_de_novo_chimera_filtering.log",
usersort=False,
HALT_EXEC=False,
save_intermediate_files=False,
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 56; 2, function_name:usearch_cluster_seqs_ref; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 3, 38; 3, 41; 3, 44; 3, 47; 3, 50; 3, 53; 4, identifier:fasta_filepath; 5, default_parameter; 5, 6; 5, 7; 6, identifier:o... | def usearch_cluster_seqs_ref(
fasta_filepath,
output_filepath=None,
percent_id=0.97,
sizein=True,
sizeout=True,
w=64,
slots=16769023,
maxrejects=64,
log_name="usearch_cluster_seqs.log",
usersort=True,
HALT_EXEC=False,
save_i... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 30; 2, function_name:assign_reads_to_otus; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 3, 27; 4, identifier:original_fasta; 5, identifier:filtered_fasta; 6, default_parameter; 6, 7; 6, 8; 7, identifier:output_filepath; 8, None; 9, def... | def assign_reads_to_otus(original_fasta,
filtered_fasta,
output_filepath=None,
log_name="assign_reads_to_otus.log",
perc_id_blast=0.97,
global_alignment=True,
HALT_EXEC=F... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 32; 2, function_name:sort_by_abundance_usearch61; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 4, identifier:seq_path; 5, default_parameter; 5, 6; 5, 7; 6, identifier:output_dir; 7, string:'.'; 8, default_parameter; 8, 9; 8, 10... | def sort_by_abundance_usearch61(seq_path,
output_dir='.',
rev=False,
minlen=64,
remove_usearch_logs=False,
HALT_EXEC=False,
outp... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 23; 2, function_name:sort_by_length_usearch61; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 4, identifier:seq_path; 5, default_parameter; 5, 6; 5, 7; 6, identifier:output_dir; 7, string:"."; 8, default_parameter; 8, 9; 8, 10; 9, identifier:minlen; ... | def sort_by_length_usearch61(seq_path,
output_dir=".",
minlen=64,
remove_usearch_logs=False,
HALT_EXEC=False,
output_fna_filepath=None,
log_name="... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 38; 2, function_name:usearch61_fast_cluster; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 4, identifier:intermediate_fasta; 5, default_parameter; 5, 6; 5, 7; 6, identifier:percent_id; 7, float:0.97; 8, default_par... | def usearch61_fast_cluster(intermediate_fasta,
percent_id=0.97,
minlen=64,
output_dir=".",
remove_usearch_logs=False,
wordlength=8,
usearch61_maxrejects=8,
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 47; 2, function_name:usearch61_smallmem_cluster; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 3, 29; 3, 32; 3, 35; 3, 38; 3, 41; 3, 44; 4, identifier:intermediate_fasta; 5, default_parameter; 5, 6; 5, 7; 6, identifier:percent_id; 7, f... | def usearch61_smallmem_cluster(intermediate_fasta,
percent_id=0.97,
minlen=64,
rev=False,
output_dir=".",
remove_usearch_logs=False,
w... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:normalize; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, dictionary_splat_pattern; 5, 6; 6, identifier:kwargs; 7, block; 7, 8; 7, 49; 8, for_statement; 8, 9; 8, 12; 8, 20; 9, pattern_list; 9, 10; 9, 11; 10, identifier:key; 11, identifier:of... | def normalize(self, **kwargs):
for key, offset in sorted(kwargs.items()):
if key in self:
delta = offset - self[key]
for key in self.keys():
self[key] += delta
break
return self |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 15; 2, function_name:_modifyInternal; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 4, identifier:self; 5, keyword_separator; 6, default_parameter; 6, 7; 6, 8; 7, identifier:sort; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:purge; 11, False; 12, de... | def _modifyInternal(self, *, sort=None, purge=False, done=None):
sortAll, sortLevels = sort is not None and sort or ([], {})
doneAll, doneLevels = done is not None and done or ([], {})
def _mark(v, i):
if done is None:
return v[:4]
def _mark_(index, regexp... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:_getPattern; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:ipattern; 6, default_parameter; 6, 7; 6, 8; 7, identifier:done; 8, None; 9, block; 9, 10; 9, 17; 9, 42; 9, 51; 9, 72; 9, 127; 9, 133; 9, 139; 9, 365; 10, if_stateme... | def _getPattern(self, ipattern, done=None):
if ipattern is None:
return None
if ipattern is True:
if done is not None:
return ([(None, None, done)], {})
return ([(0, False)], {})
def _getReverse(pm):
return pm == '-'
def _ge... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 19; 2, function_name:view; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:purge; 10, False; 11, default_parameter; 11, 12; 11... | def view(self, sort=None, purge=False, done=None, undone=None, **kwargs):
View(self.model.modify(
sort=self._getPattern(sort),
purge=purge,
done=self._getDone(done, undone)
), **kwargs) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 17; 2, function_name:modify; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:purge; 10, False; 11, default_parameter; 11, 12; 11, 13;... | def modify(self, sort=None, purge=False, done=None, undone=None):
self.model.modifyInPlace(
sort=self._getPattern(sort),
purge=purge,
done=self._getDone(done, undone)
) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:inorder; 3, parameters; 3, 4; 3, 6; 4, list_splat_pattern; 4, 5; 5, identifier:iterables; 6, dictionary_splat_pattern; 6, 7; 7, identifier:kwargs; 8, block; 8, 9; 8, 19; 8, 32; 8, 48; 8, 52; 8, 89; 8, 94; 8, 107; 8, 113; 8, 175; 8, 185; 8, 188;... | def inorder(*iterables, **kwargs):
reverse = kwargs.pop("reverse", False)
keyfunc = kwargs.pop("key", lambda x: x)
if kwargs:
raise TypeError("invalid keyword argument '%s'" % kwargs.keys()[0])
nextvals = {}
for iterable in iterables:
next = iter(iterable).next
try:
nextval = next()
nextvals[next] = ke... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:add_tag; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:tag; 6, identifier:value; 7, block; 7, 8; 7, 20; 7, 24; 7, 46; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 11; 10, identifier:index; 11, call; 11, 12; 11, 1... | def add_tag(self, tag, value):
index = bisect_left(self.tags, (tag, value))
contains = False
if index < len(self.tags):
contains = self.tags[index] == (tag, value)
if not contains:
self.tags.insert(index, (tag, value)) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 27; 2, function_name:sort; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 4, identifier:self; 5, identifier:key; 6, default_parameter; 6, 7; 6, 8; 7, identifier:by; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:external; 11... | def sort(self,
key,
by=None,
external=None,
offset=0,
limit=None,
order=None,
alpha=False,
store_as=None):
if order and order not in [b'ASC', b'DESC', 'ASC', 'DESC']:
raise ValueError('invalid sor... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 16; 2, function_name:zrange; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 13; 4, identifier:self; 5, identifier:key; 6, default_parameter; 6, 7; 6, 8; 7, identifier:start; 8, integer:0; 9, default_parameter; 9, 10; 9, 11; 10, identifier:stop; 11, unary_operator:-; 11... | def zrange(self, key, start=0, stop=-1, with_scores=False):
command = [b'ZRANGE', key, start, stop]
if with_scores:
command += ['WITHSCORES']
return self._execute(command) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:zrem; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:key; 6, list_splat_pattern; 6, 7; 7, identifier:members; 8, block; 8, 9; 9, return_statement; 9, 10; 10, call; 10, 11; 10, 14; 11, attribute; 11, 12; 11, 13; 12, identifie... | def zrem(self, key, *members):
return self._execute([b'ZREM', key] + list(members)) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:zremrangebyscore; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:key; 6, identifier:min_score; 7, identifier:max_score; 8, block; 8, 9; 9, return_statement; 9, 10; 10, call; 10, 11; 10, 14; 11, attribute; 11, 12; 11, 1... | def zremrangebyscore(self, key, min_score, max_score):
return self._execute([b'ZREMRANGEBYSCORE', key, min_score, max_score]) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 16; 2, function_name:zrevrange; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 13; 4, identifier:self; 5, identifier:key; 6, default_parameter; 6, 7; 6, 8; 7, identifier:start; 8, integer:0; 9, default_parameter; 9, 10; 9, 11; 10, identifier:stop; 11, unary_operator:-;... | def zrevrange(self, key, start=0, stop=-1, with_scores=False):
command = [b'ZREVRANGE', key, start, stop]
if with_scores:
command += ['WITHSCORES']
return self._execute(command) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:_sortObjects; 3, parameters; 3, 4; 3, 7; 4, default_parameter; 4, 5; 4, 6; 5, identifier:orderby; 6, string:'created'; 7, dictionary_splat_pattern; 7, 8; 8, identifier:kwargs; 9, block; 9, 10; 9, 14; 9, 36; 9, 46; 9, 55; 9, 83; 10, expression_s... | def _sortObjects(orderby='created', **kwargs):
o = []
for m in kwargs.values():
for l in iter(m):
o.append(l)
o = list(set(o))
sortfunc = _sortByCreated if orderby == 'created' else _sortByModified
if six.PY2:
o.sort(sortfunc)
else:
o.sort(key=functools.cmp_to... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_sortByCreated; 3, parameters; 3, 4; 3, 5; 4, identifier:a; 5, identifier:b; 6, block; 6, 7; 7, if_statement; 7, 8; 7, 15; 7, 18; 7, 30; 8, comparison_operator:<; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:a; 11, identifier:created... | def _sortByCreated(a, b):
if a.created < b.created:
return 1
elif a.created > b.created:
return -1
else:
return 0 |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_sortByModified; 3, parameters; 3, 4; 3, 5; 4, identifier:a; 5, identifier:b; 6, block; 6, 7; 7, if_statement; 7, 8; 7, 15; 7, 18; 7, 30; 8, comparison_operator:<; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:a; 11, identifier:modifi... | def _sortByModified(a, b):
if a.modified < b.modified:
return 1
elif a.modified > b.modified:
return -1
else:
return 0 |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 31; 2, function_name:wngram2idngram; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 3, 10; 3, 13; 3, 16; 3, 19; 3, 22; 3, 25; 3, 28; 4, identifier:input_file; 5, identifier:vocab_file; 6, identifier:output_file; 7, default_parameter; 7, 8; 7, 9; 8, identifier:buffersize; ... | def wngram2idngram(input_file, vocab_file, output_file, buffersize=100, hashtablesize=2000000, files=20, compress=False, verbosity=2, n=3, write_ascii=False, fof_size=10):
cmd = ['wngram2idngram', '-vocab', os.path.abspath(vocab_file),
'-idngram', os.path.abspath(output_file)]
if bu... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:get_top; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:stat; 6, identifier:n; 7, block; 7, 8; 8, return_statement; 8, 9; 9, subscript; 9, 10; 9, 29; 10, call; 10, 11; 10, 12; 11, identifier:sorted; 12, argument_list; 12, 13... | def get_top(self, stat, n):
return sorted(self.stats, key=lambda x: getattr(x, stat), reverse=True)[:n] |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:toposort; 3, parameters; 3, 4; 3, 5; 4, identifier:initialAtoms; 5, identifier:initialBonds; 6, block; 6, 7; 6, 11; 6, 17; 6, 21; 6, 27; 6, 31; 6, 35; 6, 51; 6, 63; 6, 69; 6, 74; 6, 142; 6, 152; 6, 164; 6, 178; 6, 180; 6, 185; 7, expression_sta... | def toposort(initialAtoms, initialBonds):
atoms = []
a_append = atoms.append
bonds = []
b_append = bonds.append
ahash = {}
bhash = {}
for atom in initialAtoms[1:]:
ahash[atom.handle] = 1
for bond in initialBonds:
bhash[bond.handle] = bond
next = initialAtoms[0]
a_... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:flip_uuid_parts; 3, parameters; 3, 4; 4, identifier:uuid; 5, block; 5, 6; 5, 15; 5, 31; 5, 40; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:flipped_uuid; 9, call; 9, 10; 9, 13; 10, attribute; 10, 11; 10, 12; 11, ident... | def flip_uuid_parts(uuid):
flipped_uuid = uuid.split('-')
flipped_uuid[0], flipped_uuid[2] = flipped_uuid[2], flipped_uuid[0]
flipped_uuid = '-'.join(flipped_uuid)
return flipped_uuid |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:SortedSet; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:name; 6, default_parameter; 6, 7; 6, 8; 7, identifier:initial; 8, None; 9, block; 9, 10; 10, return_statement; 10, 11; 11, call; 11, 12; 11, 15; 12, attribute; 12, 13... | def SortedSet(self, name, initial=None):
return types.SortedSet(name, self.api, initial) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:add; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:member; 6, identifier:score; 7, block; 7, 8; 8, return_statement; 8, 9; 9, call; 9, 10; 9, 15; 10, attribute; 10, 11; 10, 14; 11, attribute; 11, 12; 11, 13; 12, identifier:... | def add(self, member, score):
return self.client.zadd(self.name, member, score) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:deserialize; 3, parameters; 3, 4; 3, 5; 4, identifier:cls; 5, identifier:value; 6, block; 6, 7; 6, 16; 6, 26; 6, 36; 6, 47; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:parsed; 10, call; 10, 11; 10, 14; 11, attribute... | def deserialize(cls, value):
parsed = json.loads(value)
if "name" not in parsed:
raise ValueError("No peer name.")
if "ip" not in parsed:
raise ValueError("No peer IP.")
if "port" not in parsed:
parsed["port"] = DEFAULT_PEER_PORT
return cls(par... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:apply_config; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:config; 6, block; 6, 7; 6, 19; 6, 37; 6, 45; 6, 57; 6, 63; 6, 73; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:s... | def apply_config(self, config):
self.host = config.get("host", "127.0.0.1")
self.configured_ports = config.get("ports", [config.get("port")])
self.discovery = config["discovery"]
self.metadata = config.get("metadata", {})
self.update_ports()
self.check_interval = config["... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 10; 2, function_name:get_key; 3, parameters; 3, 4; 3, 7; 4, default_parameter; 4, 5; 4, 6; 5, identifier:key; 6, None; 7, default_parameter; 7, 8; 7, 9; 8, identifier:keyfile; 9, None; 10, block; 10, 11; 10, 68; 11, if_statement; 11, 12; 11, 15; 12, comparison_ope... | def get_key(key=None, keyfile=None):
if key is None:
if keyfile is None:
key = environ.get('CRYPTOYAML_SECRET')
if key is None:
raise MissingKeyException(
'''You must either provide a key value,'''
''' a path to a key or its val... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 27; 2, function_name:getList; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 3, 21; 3, 24; 4, identifier:self; 5, identifier:full_path; 6, default_parameter; 6, 7; 6, 8; 7, identifier:type; 8, integer:1; 9, default_parameter; 9, 10; 9, 11; 10, identif... | def getList(self, full_path, type = 1, dept = 0, sort = 'name', order = 'asc', startnum = 0, pagingrow = 1000, dummy = 56184):
if type not in range(1, 6):
print "Error getList: `type` should be between 1 to 5"
return False
data = {'orgresource': full_path,
'type':... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 21; 2, function_name:list_assignment_groups; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 4, identifier:self; 5, identifier:course_id; 6, default_parameter; 6, 7; 6, 8; 7, identifier:exclude_assignment_submission_types; 8, None; 9, default_parameter... | def list_assignment_groups(self, course_id, exclude_assignment_submission_types=None, grading_period_id=None, include=None, override_assignment_dates=None, scope_assignments_to_student=None):
path = {}
data = {}
params = {}
path["course_id"] = course_id
if include is not Non... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_sorted_keys; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 39; 6, try_statement; 6, 7; 6, 16; 7, block; 7, 8; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 11; 10, identifier:keys; 11, subscript; 11, 12; 11, 15; 12, att... | def _sorted_keys(self):
try:
keys = self._cache['sorted_keys']
except KeyError:
keys = self._cache['sorted_keys'] = sorted(self.keys(), key=parse_version)
return keys |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 21; 2, function_name:query; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 4, identifier:self; 5, identifier:query; 6, default_parameter; 6, 7; 6, 8; 7, identifier:filters; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:columns; 11, None;... | def query(self, query, filters=None, columns=None, sort=None, start=0, rows=30):
if not columns:
columns = ["*", "score"]
fields = {"q": query,
"json.nl" :"map",
"fl": ",".join(columns),
"start": str(start),
"rows": str(rows... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 21; 2, function_name:search_videohub; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 3, 15; 3, 18; 4, identifier:cls; 5, identifier:query; 6, default_parameter; 6, 7; 6, 8; 7, identifier:filters; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:status; 1... | def search_videohub(cls, query, filters=None, status=None, sort=None, size=None, page=None):
url = getattr(settings, "VIDEOHUB_API_SEARCH_URL", cls.DEFAULT_VIDEOHUB_API_SEARCH_URL)
headers = {
"Content-Type": "application/json",
"Authorization": settings.VIDEOHUB_API_TOKEN,
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:insert; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:key; 6, identifier:value; 7, block; 7, 8; 7, 15; 7, 25; 8, expression_statement; 8, 9; 9, call; 9, 10; 9, 13; 10, attribute; 10, 11; 10, 12; 11, identifier:self; 12, ide... | def insert(self, key, value):
self._find_lte(key)
node = self._create_node(key, value)
self._insert(node) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:sort; 3, parameters; 3, 4; 3, 5; 3, 7; 4, identifier:self; 5, list_splat_pattern; 5, 6; 6, identifier:sorting; 7, dictionary_splat_pattern; 7, 8; 8, identifier:kwargs; 9, block; 9, 10; 9, 14; 9, 61; 9, 74; 10, expression_statement; 10, 11; 11, ... | def sort(self, *sorting, **kwargs):
sorting_ = []
for name, desc in sorting:
field = self.meta.model._meta.fields.get(name)
if field is None:
continue
if desc:
field = field.desc()
sorting_.append(field)
if sorting_:... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:split; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:indices; 6, block; 6, 7; 7, return_statement; 7, 8; 8, list_comprehension; 8, 9; 8, 16; 9, call; 9, 10; 9, 11; 10, identifier:LogicalNetworkList; 11, argument_list; 11, 12; 11,... | def split(self, indices):
return [LogicalNetworkList(self.hg, part) for part in np.split(self.__matrix, indices)] |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 7; 2, function_name:movies_box_office; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, dictionary_splat_pattern; 5, 6; 6, identifier:kwargs; 7, block; 7, 8; 7, 17; 7, 27; 7, 34; 8, expression_statement; 8, 9; 9, assignment; 9, 10; 9, 11; 10, identifier:path; 11,... | def movies_box_office(self, **kwargs):
path = self._get_path('movies_box_office')
response = self._GET(path, kwargs)
self._set_attrs_to_values(response)
return response |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 4; 2, function_name:get_parents; 3, parameters; 4, block; 4, 5; 4, 14; 4, 28; 4, 49; 5, expression_statement; 5, 6; 6, assignment; 6, 7; 6, 8; 7, identifier:distributions; 8, call; 8, 9; 8, 10; 9, identifier:get_installed_distributions; 10, argument_list; 10, 11; ... | def get_parents():
distributions = get_installed_distributions(user_only=ENABLE_USER_SITE)
remaining = {d.project_name.lower() for d in distributions}
requirements = {r.project_name.lower() for d in distributions for
r in d.requires()}
return get_realnames(remaining - requirements) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:get_realnames; 3, parameters; 3, 4; 4, identifier:packages; 5, block; 5, 6; 6, return_statement; 6, 7; 7, call; 7, 8; 7, 9; 8, identifier:sorted; 9, argument_list; 9, 10; 9, 20; 10, set_comprehension; 10, 11; 10, 17; 11, attribute; 11, 12; 11, ... | def get_realnames(packages):
return sorted({get_distribution(p).project_name for p in packages},
key=lambda n: n.lower()) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 4; 2, function_name:build_sort; 3, parameters; 4, block; 4, 5; 4, 7; 4, 18; 4, 30; 4, 43; 5, expression_statement; 5, 6; 6, string:'''Build sort query paramter from kwargs'''; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:sorts; 10, call... | def build_sort():
'''Build sort query paramter from kwargs'''
sorts = request.args.getlist('sort')
sorts = [sorts] if isinstance(sorts, basestring) else sorts
sorts = [s.split(' ') for s in sorts]
return [{SORTS[s]: d} for s, d in sorts if s in SORTS] |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:sort; 3, parameters; 3, 4; 4, identifier:transactions; 5, block; 5, 6; 6, return_statement; 6, 7; 7, subscript; 7, 8; 7, 34; 8, call; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:transactions; 11, identifier:sort; 12, argument_list; ... | def sort(transactions):
return transactions.sort(key=lambda x: datetime.datetime.strptime(x.split(':')[0], '%Y-%m-%d'))[:] |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:duplicates; 3, parameters; 3, 4; 3, 5; 4, identifier:base; 5, identifier:items; 6, block; 6, 7; 7, for_statement; 7, 8; 7, 9; 7, 10; 8, identifier:item; 9, identifier:items; 10, block; 10, 11; 11, if_statement; 11, 12; 11, 26; 12, boolean_opera... | def duplicates(base, items):
for item in items:
if item.similarity(base) and not item.equality(base):
yield item |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:sort; 3, parameters; 3, 4; 3, 5; 4, identifier:base; 5, identifier:items; 6, block; 6, 7; 7, return_statement; 7, 8; 8, call; 8, 9; 8, 10; 9, identifier:sorted; 10, argument_list; 10, 11; 10, 12; 10, 17; 11, identifier:items; 12, keyword_argume... | def sort(base, items):
return sorted(items, key=base.similarity, reverse=True) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:Subclasses; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:cls; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort_by; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:reverse; 10, False; 11, block; 11, 12; 11, 18; 11, 48; 11, 57; 1... | def Subclasses(cls, sort_by=None, reverse=False):
l = list()
for attr, value in get_all_attributes(cls):
try:
if issubclass(value, Constant):
l.append((attr, value))
except:
pass
if sort_by is None:
sort_by =... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:subclasses; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort_by; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:reverse; 10, False; 11, block; 11, 12; 11, 18; 11, 47; 12, expr... | def subclasses(self, sort_by=None, reverse=False):
l = list()
for attr, _ in self.Subclasses(sort_by, reverse):
value = getattr(self, attr)
l.append((attr, value))
return l |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:organize_dir; 3, parameters; 3, 4; 4, identifier:orig_dir; 5, block; 5, 6; 5, 8; 5, 24; 5, 33; 5, 46; 5, 53; 5, 109; 5, 116; 5, 122; 5, 342; 6, expression_statement; 6, 7; 7, string:'''scans through the given directory and organizes DICOMs that... | def organize_dir(orig_dir):
'''scans through the given directory and organizes DICOMs that look similar into subdirectories
output directory is the ``orig_dir`` with ``-sorted`` appended to the end'''
tags = [
(0x10,0x20),
(0x8,0x21),
(0x8,0x31),
(0x8,0x103e)
]
orig_d... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:reconstruct_files; 3, parameters; 3, 4; 4, identifier:input_dir; 5, block; 5, 6; 5, 8; 5, 17; 6, expression_statement; 6, 7; 7, string:'''sorts ``input_dir`` and tries to reconstruct the subdirectories found'''; 8, expression_statement; 8, 9; 9... | def reconstruct_files(input_dir):
'''sorts ``input_dir`` and tries to reconstruct the subdirectories found'''
input_dir = input_dir.rstrip('/')
with nl.notify('Attempting to organize/reconstruct directory'):
for r,ds,fs in os.walk(input_dir):
for f in fs:
if f[0]=='.':
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:lint; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:targets; 6, block; 6, 7; 6, 13; 6, 23; 6, 45; 6, 57; 6, 67; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:LinterRunner; 1... | def lint(self, targets):
LinterRunner.targets = targets
linters = self._config.get_linter_classes()
with Pool() as pool:
out_err_none = pool.map(LinterRunner.run, linters)
out_err = [item for item in out_err_none if item is not None]
stdout, stderr = zip(*out_err)
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:_linear_interp; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:curve; 5, identifier:test_x; 6, default_parameter; 6, 7; 6, 8; 7, identifier:round_result; 8, False; 9, block; 9, 10; 9, 14; 10, expression_statement; 10, 11; 11, assignment; 11, 12... | def _linear_interp(curve, test_x, round_result=False):
index = 0
for index in range(len(curve) - 1):
if curve[index][0] == curve[index + 1][0]:
continue
if curve[index][0] <= test_x <= curve[index + 1][0]:
slope = ((curve[index + 1][1] - curve[index][1]) /
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:bound_weights; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:weights; 5, default_parameter; 5, 6; 5, 7; 6, identifier:minimum; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:maximum; 10, None; 11, block; 11, 12; 11, 19; 11, 92; 11,... | def bound_weights(weights, minimum=None, maximum=None):
bounded_weights = weights[:]
if minimum is not None and maximum is not None:
if maximum < minimum:
raise ValueError
bounded_weights = [bw for bw in bounded_weights
if minimum <= bw[0] <= maximum]
e... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:weighted_rand; 3, parameters; 3, 4; 3, 5; 4, identifier:weights; 5, default_parameter; 5, 6; 5, 7; 6, identifier:round_result; 7, False; 8, block; 8, 9; 8, 23; 8, 38; 8, 46; 8, 55; 8, 59; 8, 72; 8, 76; 9, if_statement; 9, 10; 9, 16; 10, compari... | def weighted_rand(weights, round_result=False):
if len(weights) == 1:
return weights[0][0]
weights = sorted(weights, key=lambda w: w[0])
x_min = weights[0][0]
x_max = weights[-1][0]
y_min = 0
y_max = max([point[1] for point in weights])
attempt_count = 0
while attempt_count < 500... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:_cmp_key; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:obj; 7, None; 8, block; 8, 9; 8, 17; 8, 31; 8, 45; 9, if_statement; 9, 10; 9, 12; 10, not_operator; 10, 11; 11, identifier:obj; 12, block; ... | def _cmp_key(self, obj=None):
if not obj:
obj = self
line_nr = int(obj.line_nr) if obj.line_nr else 0
col = int(obj.col) if obj.col else 0
return (obj.path, line_nr, col, obj.msg) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_create_output_from_match; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:match_result; 6, block; 6, 7; 6, 13; 6, 22; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:full_path; 10, subscript; 10, 11; 10, 1... | def _create_output_from_match(self, match_result):
full_path = match_result['full_path']
path = self._get_relative_path(full_path)
return LinterOutput(self.name, path, match_result['msg']) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 10; 2, function_name:get_cached_filename; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 7; 4, identifier:self; 5, identifier:filename; 6, identifier:extention; 7, default_parameter; 7, 8; 7, 9; 8, identifier:settings_list; 9, None; 10, block; 10, 11; 10, 26; 11, expression_... | def get_cached_filename(self, filename, extention, settings_list=None):
cached_name = "_".join([filename, self.get_hash()])
return ".".join([cached_name, extention]) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 10; 2, function_name:sort_func; 3, parameters; 3, 4; 3, 7; 4, default_parameter; 4, 5; 4, 6; 5, identifier:variant; 6, identifier:VARIANT1; 7, default_parameter; 7, 8; 7, 9; 8, identifier:case_sensitive; 9, False; 10, block; 10, 11; 11, return_statement; 11, 12; 1... | def sort_func(variant=VARIANT1, case_sensitive=False):
return lambda x: normalize(
x, variant=variant, case_sensitive=case_sensitive) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_notify_reader_writes; 3, parameters; 3, 4; 4, identifier:writeto; 5, block; 5, 6; 5, 10; 5, 43; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:satisfied; 9, list:[]; 10, for_statement; 10, 11; 10, 12; 10, 13; 11, ident... | def _notify_reader_writes(writeto):
satisfied = []
for var in writeto:
if var.readable:
for reader in var.readers:
reader.notify_read_ready()
if reader.satisfied:
satisfied.append(reader)
return Closure.sort(satisfied) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:getFilePathsWithExtensionsInDirectory; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:dirTree; 5, identifier:patterns; 6, default_parameter; 6, 7; 6, 8; 7, identifier:sort; 8, True; 9, block; 9, 10; 9, 14; 9, 63; 9, 72; 10, expression_statement... | def getFilePathsWithExtensionsInDirectory(dirTree, patterns, sort=True):
filePaths = []
for root, dirs, files in os.walk(dirTree):
for filePath in files:
for pattern in patterns:
if fnmatch.fnmatch(filePath, pattern):
fullPath = os.path.join(root, filePath... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:shellsort; 3, parameters; 3, 4; 4, identifier:inlist; 5, block; 5, 6; 5, 13; 5, 22; 5, 29; 5, 35; 5, 130; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:n; 9, call; 9, 10; 9, 11; 10, identifier:len; 11, argument_list; 1... | def shellsort(inlist):
n = len(inlist)
svec = copy.deepcopy(inlist)
ivec = range(n)
gap = n / 2
while gap > 0:
for i in range(gap, n):
for j in range(i - gap, -1, -gap):
while j >= 0 and svec[j] > svec[j + gap]:
temp = svec[j]
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:rankdata; 3, parameters; 3, 4; 4, identifier:inlist; 5, block; 5, 6; 5, 13; 5, 22; 5, 26; 5, 30; 5, 37; 5, 114; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:n; 9, call; 9, 10; 9, 11; 10, identifier:len; 11, argument_l... | def rankdata(inlist):
n = len(inlist)
svec, ivec = shellsort(inlist)
sumranks = 0
dupcount = 0
newlist = [0] * n
for i in range(n):
sumranks = sumranks + i
dupcount = dupcount + 1
if i == n - 1 or svec[i] != svec[i + 1]:
averank = sumranks / float(dupcount) + ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 12; 2, function_name:to_json; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 4, identifier:self; 5, keyword_separator; 6, default_parameter; 6, 7; 6, 8; 7, identifier:indent; 8, None; 9, default_parameter; 9, 10; 9, 11; 10, identifier:sort_keys; 11, False; 12, block; 12, ... | def to_json(self, *, indent=None, sort_keys = False):
return json.dumps({k: v for k, v in dict(self).items() if v is not None}, indent=indent, sort_keys=sort_keys,
default=self._try_dict) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:get_sort_field; 3, parameters; 3, 4; 3, 5; 4, identifier:attr; 5, identifier:model; 6, block; 6, 7; 7, try_statement; 7, 8; 7, 21; 8, block; 8, 9; 9, if_statement; 9, 10; 9, 18; 10, call; 10, 11; 10, 16; 11, attribute; 11, 12; 11, 15; 12, attri... | def get_sort_field(attr, model):
try:
if model._meta.get_field(attr):
return attr
except FieldDoesNotExist:
if isinstance(attr, basestring):
val = getattr(model, attr, None)
if val and hasattr(val, 'sort_field'):
return getattr(model, attr).sor... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:sorted_query_paths; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 6, return_statement; 6, 7; 7, call; 7, 8; 7, 9; 8, identifier:list; 9, argument_list; 9, 10; 10, call; 10, 11; 10, 12; 11, identifier:reversed; 12, argument_list; 12, ... | def sorted_query_paths(self):
return list(reversed(sorted(p[0] for p in self.namespace.alias_to_query_paths.get(self.name)))) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:add_arguments; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:actions; 6, block; 6, 7; 6, 22; 7, expression_statement; 7, 8; 8, assignment; 8, 9; 8, 10; 9, identifier:actions; 10, call; 10, 11; 10, 12; 11, identifier:sorted; 12, a... | def add_arguments(self, actions):
actions = sorted(
actions, key=operator.attrgetter('option_strings'))
super(SortedHelpFormatter, self).add_arguments(actions) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_iter_indented_subactions; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:action; 6, block; 6, 7; 7, try_statement; 7, 8; 7, 15; 7, 19; 8, block; 8, 9; 9, expression_statement; 9, 10; 10, assignment; 10, 11; 10, 12; 11, identifier... | def _iter_indented_subactions(self, action):
try:
get_subactions = action._get_subactions
except AttributeError:
pass
else:
self._indent()
if isinstance(action, argparse._SubParsersAction):
for subaction in sorted(
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_sort2sql; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:sort; 6, block; 6, 7; 6, 13; 7, if_statement; 7, 8; 7, 10; 8, not_operator; 8, 9; 9, identifier:sort; 10, block; 10, 11; 11, return_statement; 11, 12; 12, string:""; 13, re... | def _sort2sql(self, sort):
if not sort:
return ""
return SQL_ORDERBY + sql_list([quote_column(o.field) + (" DESC" if o.sort == -1 else "") for o in sort]) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 14; 2, function_name:optimize_batch; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:batchsize; 7, integer:10; 8, default_parameter; 8, 9; 8, 10; 9, identifier:returns; 10, string:'best'; 11, default_para... | def optimize_batch(self, batchsize=10, returns='best', paralell=True):
if returns not in ('best', 'all'):
raise ValueError('returns must be either "best" or "all"')
starts = [np.random.rand(self.m * 2) * 10 for i in range(batchsize)]
if paralell:
with Pool() as p:
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:list_gewesten; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort; 7, integer:1; 8, block; 8, 9; 8, 11; 8, 81; 8, 117; 8, 128; 9, expression_statement; 9, 10; 10, string:'''
List all `gew... | def list_gewesten(self, sort=1):
'''
List all `gewesten` in Belgium.
:param integer sort: What field to sort on.
:rtype: A :class`list` of class: `Gewest`.
'''
def creator():
res = crab_gateway_request(self.client, 'ListGewesten', sort)
tmp = {}
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:list_provincies; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:gewest; 7, integer:2; 8, block; 8, 9; 8, 11; 8, 26; 8, 58; 8, 94; 8, 105; 9, expression_statement; 9, 10; 10, string:'''
Lis... | def list_provincies(self, gewest=2):
'''
List all `provincies` in a `gewest`.
:param gewest: The :class:`Gewest` for which the \
`provincies` are wanted.
:param integer sort: What field to sort on.
:rtype: A :class:`list` of :class:`Provincie`.
'''
try... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 11; 2, function_name:list_gemeenten; 3, parameters; 3, 4; 3, 5; 3, 8; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:gewest; 7, integer:2; 8, default_parameter; 8, 9; 8, 10; 9, identifier:sort; 10, integer:1; 11, block; 11, 12; 11, 14; 11, 38;... | def list_gemeenten(self, gewest=2, sort=1):
'''
List all `gemeenten` in a `gewest`.
:param gewest: The :class:`Gewest` for which the \
`gemeenten` are wanted.
:param integer sort: What field to sort on.
:rtype: A :class:`list` of :class:`Gemeente`.
'''
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:list_gemeenten; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort; 7, integer:1; 8, block; 8, 9; 8, 11; 8, 67; 8, 103; 8, 114; 9, expression_statement; 9, 10; 10, string:'''
List all `ge... | def list_gemeenten(self, sort=1):
'''
List all `gemeenten` in Vlaanderen.
:param integer sort: What field to sort on.
:rtype: A :class:`list` of :class:`Gemeente`.
'''
def creator():
url = self.base_url + '/municipality'
h = self.base_headers
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:list_kadastrale_afdelingen; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 8; 5, 39; 5, 74; 6, expression_statement; 6, 7; 7, string:'''
List all `kadastrale afdelingen` in Flanders.
:param integer sort: Field to so... | def list_kadastrale_afdelingen(self):
'''
List all `kadastrale afdelingen` in Flanders.
:param integer sort: Field to sort on.
:rtype: A :class:`list` of :class:`Afdeling`.
'''
def creator():
gemeentes = self.list_gemeenten()
res = []
f... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:list_kadastrale_afdelingen_by_gemeente; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:gemeente; 6, default_parameter; 6, 7; 6, 8; 7, identifier:sort; 8, integer:1; 9, block; 9, 10; 9, 12; 9, 36; 9, 42; 9, 107; 9, 143; 9, 15... | def list_kadastrale_afdelingen_by_gemeente(self, gemeente, sort=1):
'''
List all `kadastrale afdelingen` in a `gemeente`.
:param gemeente: The :class:`Gemeente` for which the \
`afdelingen` are wanted.
:param integer sort: Field to sort on.
:rtype: A :class:`list` of ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:list_percelen_by_sectie; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:sectie; 6, block; 6, 7; 6, 9; 6, 15; 6, 23; 6, 33; 6, 39; 6, 107; 6, 143; 6, 154; 7, expression_statement; 7, 8; 8, string:'''
List all percelen in a ... | def list_percelen_by_sectie(self, sectie):
'''
List all percelen in a `sectie`.
:param sectie: The :class:`Sectie` for which the percelen are wanted.
:param integer sort: Field to sort on.
:rtype: A :class:`list` of :class:`Perceel`.
'''
sid = sectie.id
ai... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 14; 2, function_name:get_urls; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:order; 7, string:"total_clicks desc"; 8, default_parameter; 8, 9; 8, 10; 9, identifier:offset; 10, None; 11, default_paramete... | def get_urls(self, order="total_clicks desc", offset=None, count=None):
req_data = [ None, order, fmt_paging(offset, count) ]
return self.request("query:Message_Url", req_data) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:get_message_urls; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:message_id; 6, default_parameter; 6, 7; 6, 8; 7, identifier:order; 8, string:"total_clicks desc"; 9, block; 9, 10; 9, 23; 10, expression_statement; 10, 11; 11,... | def get_message_urls(self, message_id, order="total_clicks desc"):
req_data = [ { "message_id": str(message_id) }, order, None ]
return self.request("query:Message_Url", req_data) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 29; 2, function_name:trade_history; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 3, 26; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:from_; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:count; 10, None; 11,... | def trade_history(
self, from_=None, count=None, from_id=None, end_id=None,
order=None, since=None, end=None, pair=None
):
return self._trade_api_call(
'TradeHistory', from_=from_, count=count, from_id=from_id, end_id=end_id,
order=order, since=since, end=end, pair=pa... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 26; 2, function_name:trans_history; 3, parameters; 3, 4; 3, 5; 3, 8; 3, 11; 3, 14; 3, 17; 3, 20; 3, 23; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:from_; 7, None; 8, default_parameter; 8, 9; 8, 10; 9, identifier:count; 10, None; 11, defaul... | def trans_history(
self, from_=None, count=None, from_id=None, end_id=None,
order=None, since=None, end=None
):
return self._trade_api_call(
'TransHistory', from_=from_, count=count, from_id=from_id, end_id=end_id,
order=order, since=since, end=end
) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:get_atom_type_symbol; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:cls; 5, identifier:calc; 6, dictionary_splat_pattern; 6, 7; 7, identifier:kwargs; 8, block; 8, 9; 8, 17; 8, 25; 8, 36; 9, expression_statement; 9, 10; 10, assignment; 10, 11; ... | def get_atom_type_symbol(cls,calc,**kwargs):
parameters = calc.out.output
dictionary = parameters.get_dict()
if 'basis_set' not in dictionary.keys():
return None
return sorted(dictionary['basis_set'].keys()) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:sort_url; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 19; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:prefix; 9, boolean_operator:or; 9, 10; 9, 18; 10, boolean_operator:and; 10, 11; 10, 17; 11, parent... | def sort_url(self):
prefix = (self.sort_direction == "asc") and "-" or ""
return self.table.get_url(order_by=prefix + self.name) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:append; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:newconfig; 6, block; 6, 7; 6, 52; 6, 102; 6, 115; 6, 136; 7, for_statement; 7, 8; 7, 9; 7, 21; 8, identifier:attr_name; 9, tuple; 9, 10; 9, 11; 9, 12; 9, 13; 9, 14; 9, 15; 9, ... | def append(self, newconfig):
for attr_name in (
'title', 'body', 'author', 'date',
'strip', 'strip_id_or_class', 'strip_image_src',
'single_page_link', 'single_page_link_in_feed',
'next_page_link', 'http_header'
):
current_set = getattr(self, a... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:__exportUsers; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:self; 5, identifier:sort; 6, default_parameter; 6, 7; 6, 8; 7, identifier:limit; 8, integer:0; 9, block; 9, 10; 9, 14; 9, 23; 9, 34; 9, 38; 9, 81; 10, expression_statement; 10, 11; 1... | def __exportUsers(self, sort, limit=0):
position = 1
dataUsers = self.getSortedUsers(sort)
if limit:
dataUsers = dataUsers[:limit]
exportedUsers = []
for u in dataUsers:
userExported = u.export()
userExported["position"] = position
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 4; 2, function_name:zset_example; 3, parameters; 4, block; 4, 5; 4, 10; 4, 15; 4, 21; 4, 27; 4, 40; 4, 62; 4, 71; 4, 78; 4, 85; 4, 92; 4, 101; 4, 106; 4, 113; 5, import_from_statement; 5, 6; 5, 8; 6, dotted_name; 6, 7; 7, identifier:uuid; 8, dotted_name; 8, 9; 9, ... | def zset_example():
from uuid import uuid4
from redis import StrictRedis
from zato.redis_paginator import ZSetPaginator
conn = StrictRedis()
key = 'paginator:{}'.format(uuid4().hex)
for x in range(1, 18):
conn.zadd(key, x, chr(96 + x))
p = ZSetPaginator(conn, key, 6)
print(p.coun... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:paths_by_depth; 3, parameters; 3, 4; 4, identifier:paths; 5, block; 5, 6; 6, return_statement; 6, 7; 7, call; 7, 8; 7, 9; 8, identifier:sorted; 9, argument_list; 9, 10; 9, 11; 9, 26; 10, identifier:paths; 11, keyword_argument; 11, 12; 11, 13; 1... | def paths_by_depth(paths):
return sorted(
paths,
key=lambda path: path.count(os.path.sep),
reverse=True
) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:normalize_date; 3, parameters; 3, 4; 4, identifier:date; 5, block; 5, 6; 5, 8; 5, 117; 6, expression_statement; 6, 7; 7, string:'''normalize the specified date to milliseconds since the epoch
If it is a string, it is assumed to be some ... | def normalize_date(date):
'''normalize the specified date to milliseconds since the epoch
If it is a string, it is assumed to be some sort of datetime such as
"2015-12-27" or "2015-12-27T11:01:20.954". If date is a naive datetime,
it is assumed to be UTC.
If numeric arguments are... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:format_float; 3, parameters; 3, 4; 3, 5; 4, identifier:x; 5, identifier:max_width; 6, block; 6, 7; 6, 9; 6, 28; 6, 37; 6, 46; 7, expression_statement; 7, 8; 8, string:'''format_float will ensure that a number's decimal part is truncated to
... | def format_float(x, max_width):
'''format_float will ensure that a number's decimal part is truncated to
fit within some bounds, unless the whole part is wider than max_width,
which is a problem you need to sort out yourself.
'''
whole_width = int(math.log10(abs(x) + 1)) + 1
sign_width = 1 if x ... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:__cleanup; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 14; 5, 53; 5, 75; 5, 82; 5, 90; 5, 97; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 13; 8, attribute; 8, 9; 8, 12; 9, attribute; 9, 10; 9, 11; 10, identifier:self;... | def __cleanup(self):
self._run.value = False
if check_process_termination(proc = self._proc,
timeout = 2*self.interval,
prefix = '',
auto_... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:regroup; 3, parameters; 3, 4; 3, 5; 4, identifier:target; 5, identifier:expression; 6, block; 6, 7; 6, 13; 7, if_statement; 7, 8; 7, 10; 8, not_operator; 8, 9; 9, identifier:target; 10, block; 10, 11; 11, return_statement; 11, 12; 12, string:''... | def regroup(target, expression):
if not target: return ''
return [
{'grouper': key, 'list': list(val)}
for key, val in
groupby(obj_list, lambda v, f=expression.resolve: f(v, True))
] |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 23; 2, function_name:entityTriples; 3, parameters; 3, 4; 3, 5; 3, 6; 3, 9; 3, 12; 4, identifier:rdfGraph; 5, identifier:anEntity; 6, default_parameter; 6, 7; 6, 8; 7, identifier:excludeProps; 8, False; 9, default_parameter; 9, 10; 9, 11; 10, identifier:excludeBNod... | def entityTriples(rdfGraph, anEntity, excludeProps=False, excludeBNodes=False,
orderProps=[RDF, RDFS, OWL.OWLNS, DC.DCNS]):
temp = []
if not excludeProps:
excludeProps = []
for x, y, z in rdfGraph.triples((anEntity, None, None)):
if excludeBNodes and isBlankNode(z):
... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:msvd; 3, parameters; 3, 4; 4, identifier:m; 5, block; 5, 6; 5, 20; 5, 28; 5, 34; 5, 42; 5, 48; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 12; 8, pattern_list; 8, 9; 8, 10; 8, 11; 9, identifier:u; 10, identifier:s; 11, identifier:vdg... | def msvd(m):
u, s, vdgr = np.linalg.svd(m)
order = s.argsort()
s = s[order]
u= u[:,order]
vdgr = vdgr[order]
return u, s, vdgr.conj().T |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 6; 2, function_name:_rows_sort; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, identifier:rows; 6, block; 6, 7; 7, return_statement; 7, 8; 8, call; 8, 9; 8, 10; 9, identifier:sorted; 10, argument_list; 10, 11; 10, 12; 11, identifier:rows; 12, keyword_argument; ... | def _rows_sort(self, rows):
return sorted(rows, key=lambda row: (row[self._key_start_date], row[self._key_end_date])) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 8; 2, function_name:get_rows; 3, parameters; 3, 4; 3, 5; 4, identifier:self; 5, default_parameter; 5, 6; 5, 7; 6, identifier:sort; 7, False; 8, block; 8, 9; 8, 13; 8, 51; 9, expression_statement; 9, 10; 10, assignment; 10, 11; 10, 12; 11, identifier:ret; 12, list:... | def get_rows(self, sort=False):
ret = []
for _, rows in sorted(self._rows.items()) if sort else self._rows.items():
self._rows_int2date(rows)
ret.extend(rows)
return ret |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:get_entries; 3, parameters; 3, 4; 4, identifier:path; 5, block; 5, 6; 5, 14; 5, 57; 5, 63; 5, 69; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 11; 8, pattern_list; 8, 9; 8, 10; 9, identifier:dirs; 10, identifier:files; 11, expression_... | def get_entries(path):
dirs, files = [], []
for entry in os.listdir(path):
if os.path.isdir(os.path.join(path, entry)):
dirs.append(entry)
else:
files.append(entry)
dirs.sort()
files.sort()
return dirs, files |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:sort; 3, parameters; 3, 4; 4, identifier:ctx; 5, block; 5, 6; 5, 14; 5, 22; 5, 30; 5, 38; 5, 49; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:head; 9, attribute; 9, 10; 9, 13; 10, attribute; 10, 11; 10, 12; 11, identi... | def sort(ctx):
head = ctx.parent.head
vcf_handle = ctx.parent.handle
outfile = ctx.parent.outfile
silent = ctx.parent.silent
print_headers(head, outfile=outfile, silent=silent)
for line in sort_variants(vcf_handle):
print_variant(variant_line=line, outfile=outfile, silent=silent) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_sort_to_str; 3, parameters; 3, 4; 4, identifier:self; 5, block; 5, 6; 5, 10; 5, 14; 5, 53; 5, 67; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:params_list; 9, list:[]; 10, expression_statement; 10, 11; 11, assignment... | def _sort_to_str(self):
params_list = []
timestamp = ""
for k, v in self._solr_params['sort'].items():
if k != "timestamp":
params_list.append(" ".join([k, v]))
else:
timestamp = v
params_list.append(" ".join(['timestamp', timestamp... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:_get_video_ts_file_paths; 3, parameters; 3, 4; 4, identifier:dvd_path; 5, block; 5, 6; 5, 14; 5, 18; 5, 46; 6, expression_statement; 6, 7; 7, assignment; 7, 8; 7, 9; 8, identifier:video_ts_folder_path; 9, call; 9, 10; 9, 11; 10, identifier:join... | def _get_video_ts_file_paths(dvd_path):
video_ts_folder_path = join(dvd_path, "VIDEO_TS")
video_ts_file_paths = []
for video_ts_folder_content_name in listdir(video_ts_folder_path):
video_ts_folder_content_path = join(video_ts_folder_path, video_ts_folder_content_name)
if isfile(video_ts_fol... |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 5; 2, function_name:sort_ranges; 3, parameters; 3, 4; 4, identifier:inranges; 5, block; 5, 6; 6, return_statement; 6, 7; 7, call; 7, 8; 7, 9; 8, identifier:sorted; 9, argument_list; 9, 10; 9, 11; 10, identifier:inranges; 11, keyword_argument; 11, 12; 11, 13; 12, i... | def sort_ranges(inranges):
return sorted(inranges,key=lambda x: (x.chr,x.start,x.end,x.direction)) |
0, module; 0, 1; 1, function_definition; 1, 2; 1, 3; 1, 9; 2, function_name:subtract_ranges; 3, parameters; 3, 4; 3, 5; 3, 6; 4, identifier:r1s; 5, identifier:r2s; 6, default_parameter; 6, 7; 6, 8; 7, identifier:already_sorted; 8, False; 9, block; 9, 10; 9, 16; 9, 34; 9, 38; 9, 53; 9, 57; 9, 61; 9, 254; 10, import_from... | def subtract_ranges(r1s,r2s,already_sorted=False):
from seqtools.stream import MultiLocusStream
if not already_sorted:
r1s = merge_ranges(r1s)
r2s = merge_ranges(r2s)
outputs = []
mls = MultiLocusStream([BedArrayStream(r1s),BedArrayStream(r2s)])
tot1 = 0
tot2 = 0
for loc in mls:
v = loc.payloa... |
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