sequence stringlengths 388 5.57k | docstring stringlengths 11 171 |
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0 module [1];1 function_definition [2,3,5];2 function_name [] _readable;3 parameters [4];4 identifier [] self;5 block [6,25,51,60,72,78,88,99,135];6 if_statement [7,11];7 not_operator [8];8 attribute [9,10];9 identifier [] self;10 identifier [] candidates;11 block [12,19];12 expression_statement [13];13 call [14,17];14... | The readable parsed article |
0 module [1];1 function_definition [2,3,6];2 function_name [] create_subnode;3 parameters [4,5];4 identifier [] self;5 identifier [] data;6 block [7];7 return_statement [8];8 call [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] __class__;12 argument_list [13,14,24,29];13 identifier [] data;14 keyword_... | Creates a subnode for the current node |
0 module [1];1 function_definition [2,3,5];2 function_name [] _send_status_0x01_request;3 parameters [4];4 identifier [] self;5 block [6,16];6 expression_statement [7];7 assignment [8,9];8 identifier [] status_command;9 call [10,11];10 identifier [] StandardSend;11 argument_list [12,15];12 attribute [13,14];13 identifi... | Sent status request to device. |
0 module [1];1 function_definition [2,3,7];2 function_name [] subscribe;3 parameters [4,5,6];4 identifier [] self;5 identifier [] transport;6 identifier [] data;7 block [8,27];8 expression_statement [9];9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] add;13 argument_list [14,15];14 identifier... | adds a transport to a channel |
0 module [1];1 function_definition [2,3,12];2 function_name [] validateAQLQuery;3 parameters [4,5,6,9];4 identifier [] self;5 identifier [] query;6 default_parameter [7,8];7 identifier [] bindVars;8 None [];9 default_parameter [10,11];10 identifier [] options;11 None [];12 block [13,15,24,33,46,72,80];13 expression_sta... | returns the server answer is the query is valid. Raises an AQLQueryError if not |
0 module [1];1 function_definition [2,3,5];2 function_name [] nqueen_graph;3 parameters [4];4 identifier [] self;5 block [6,12,40,52,64,107,143,150,157,172];6 expression_statement [7];7 assignment [8,9];8 identifier [] nqueens;9 attribute [10,11];10 identifier [] self;11 identifier [] results;12 for_statement [13,14,24... | Graph n-queens problem for the current version and context. |
0 module [1];1 function_definition [2,3,10];2 function_name [] validate;3 parameters [4,5,8];4 identifier [] cls;5 default_parameter [6,7];6 identifier [] partial;7 True [];8 dictionary_splat_pattern [9];9 identifier [] kwargs;10 block [11,15,47,54,110];11 expression_statement [12];12 assignment [13,14];13 identifier [... | Validate kwargs before setting attributes on the model |
0 module [1];1 function_definition [2,3,7];2 function_name [] forcemigrate;3 parameters [4];4 default_parameter [5,6];5 identifier [] app;6 None [];7 block [8,18,28];8 if_statement [9,12];9 comparison_operator [10,11] is;10 identifier [] app;11 None [];12 block [13];13 expression_statement [14];14 call [15,16];15 ident... | Force migrations to apply for a given app. |
0 module [1];1 function_definition [2,3,11];2 function_name [] from_disk_add_path;3 parameters [4,5,8];4 identifier [] self;5 default_parameter [6,7];6 identifier [] path;7 None [];8 default_parameter [9,10];9 identifier [] resource_list;10 None [];11 block [12,33,52];12 if_statement [13,27];13 () [14];14 boolean_opera... | Add to resource_list with resources from disk scan starting at path. |
0 module [1];1 function_definition [2,3,21];2 function_name [] rest_get;3 parameters [4,5,6,9,12,15,18];4 identifier [] self;5 identifier [] url;6 default_parameter [7,8];7 identifier [] params;8 None [];9 default_parameter [10,11];10 identifier [] headers;11 None [];12 default_parameter [13,14];13 identifier [] auth;1... | Perform a GET request to url with optional authentication |
0 module [1];1 function_definition [2,3,5];2 function_name [] open_files;3 parameters [4];4 identifier [] filenames;5 block [6,13,26];6 expression_statement [7];7 assignment [8,9];8 identifier [] command;9 binary_operator [10,12] +;10 list [11] ['open'];11 string [] open;12 identifier [] filenames;13 expression_stateme... | Call the system 'open' command on a file. |
0 module [1];1 function_definition [2,3,6];2 function_name [] _init_edges_relationships;3 parameters [4,5];4 identifier [] rel2src2dsts;5 identifier [] rel2dst2srcs;6 block [7,11,23,97];7 expression_statement [8];8 assignment [9,10];9 identifier [] edge_rel2fromto;10 dictionary [];11 expression_statement [12];12 assign... | Get the directed edges from GO term to GO term using relationships. |
0 module [1];1 function_definition [2,3,6];2 function_name [] vtquery;3 parameters [4,5];4 identifier [] apikey;5 identifier [] checksums;6 block [7,30];7 expression_statement [8];8 assignment [9,10];9 identifier [] data;10 dictionary [11,14];11 pair [12,13];12 string [] apikey;13 identifier [] apikey;14 pair [15,16];1... | Performs the query dealing with errors and throttling requests. |
0 module [1];1 function_definition [2,3,5];2 function_name [] deleteSNPs;3 parameters [4];4 identifier [] setName;5 block [6,12,69];6 expression_statement [7];7 assignment [8,9];8 identifier [] con;9 attribute [10,11];10 identifier [] conf;11 identifier [] db;12 try_statement [13,57];13 block [14,23,29,35,45,51];14 exp... | deletes a set of polymorphisms |
0 module [1];1 function_definition [2,3,6];2 function_name [] drop_columns;3 parameters [4,5];4 identifier [] records;5 identifier [] slices;6 block [7];7 for_statement [8,9,10];8 identifier [] record;9 identifier [] records;10 block [11,36,52,79];11 expression_statement [12];12 assignment [13,14];13 identifier [] drop... | Drop all columns present in ``slices`` from records |
0 module [1];1 function_definition [2,3,7];2 function_name [] delete_external_nodes;3 parameters [4,5];4 identifier [] sender;5 dictionary_splat_pattern [6];6 identifier [] kwargs;7 block [8,14,44];8 expression_statement [9];9 assignment [10,11];10 identifier [] node;11 subscript [12,13];12 identifier [] kwargs;13 stri... | sync by deleting nodes from external layers when needed |
0 module [1];1 function_definition [2,3,5];2 function_name [] sendhello;3 parameters [4];4 identifier [] self;5 block [6];6 try_statement [7,59];7 block [8,20,30,39,49];8 expression_statement [9];9 assignment [10,11];10 identifier [] cli_hello_msg;11 binary_operator [12,19] +;12 binary_operator [13,18] +;13 binary_oper... | end of function exchgcaps |
0 module [1];1 function_definition [2,3,5];2 function_name [] _create_logger_;3 parameters [4];4 identifier [] name;5 block [6,15,23,35,42,51];6 expression_statement [7];7 assignment [8,9];8 identifier [] logger;9 call [10,13];10 attribute [11,12];11 identifier [] logging;12 identifier [] getLogger;13 argument_list [14... | Implementation detail, creates a logger. |
0 module [1];1 function_definition [2,3,16,18];2 function_name [] handle_legacy_tloc;3 parameters [4,8,12];4 typed_parameter [5,6];5 identifier [] line;6 type [7];7 identifier [] str;8 typed_parameter [9,10];9 identifier [] position;10 type [11];11 identifier [] int;12 typed_parameter [13,14];13 identifier [] tokens;14... | Handle translocations that lack the ``fromLoc`` and ``toLoc`` entries. |
0 module [1];1 function_definition [2,3,7];2 function_name [] _on_leave;3 parameters [4,5];4 identifier [] self;5 list_splat_pattern [6];6 identifier [] args;7 block [8,37];8 if_statement [9,12,24];9 attribute [10,11];10 identifier [] self;11 identifier [] __clicked;12 block [13];13 expression_statement [14];14 call [1... | Set the text color to either the normal color when not clicked or the clicked color when clicked. |
0 module [1];1 function_definition [2,3,8];2 function_name [] run_gvcftyper;3 parameters [4,5,6,7];4 identifier [] vrn_files;5 identifier [] out_file;6 identifier [] region;7 identifier [] data;8 block [9,87];9 if_statement [10,17];10 not_operator [11];11 call [12,15];12 attribute [13,14];13 identifier [] utils;14 iden... | Produce joint called variants from input gVCF files. |
0 module [1];1 function_definition [2,3,8];2 function_name [] _read_response;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] may_block;7 False [];8 block [9,25,80,86];9 expression_statement [10];10 assignment [11,12];11 identifier [] res;12 subscript [13,22];13 call [14,17];14 attribut... | Wait for a response to become available, and read it. |
0 module [1];1 function_definition [2,3,8];2 function_name [] _cwl_workflow_template;3 parameters [4,5];4 identifier [] inputs;5 default_parameter [6,7];6 identifier [] top_level;7 False [];8 block [9,13,67];9 expression_statement [10];10 assignment [11,12];11 identifier [] ready_inputs;12 list [] [];13 for_statement [... | Retrieve CWL inputs shared amongst different workflows. |
0 module [1];1 function_definition [2,3,6];2 function_name [] handle_command;3 parameters [4,5];4 identifier [] editor;5 identifier [] input_string;6 block [7,16,22,30,39,48,57,107];7 expression_statement [8];8 assignment [9,10];9 identifier [] m;10 call [11,14];11 attribute [12,13];12 identifier [] COMMAND_GRAMMAR;13 ... | Handle commands entered on the Vi command line. |
0 module [1];1 function_definition [2,3,7];2 function_name [] fit_traptransit;3 parameters [4,5,6];4 identifier [] ts;5 identifier [] fs;6 identifier [] p0;7 block [8,23,34];8 expression_statement [9];9 assignment [10,13];10 pattern_list [11,12];11 identifier [] pfit;12 identifier [] success;13 call [14,15];14 identifi... | Fits trapezoid model to provided ts,fs |
0 module [1];1 function_definition [2,3,18];2 function_name [] make_movie;3 parameters [4,5,6,9,12,15];4 identifier [] workdir;5 identifier [] pf;6 default_parameter [7,8];7 identifier [] dpi;8 integer [] 120;9 default_parameter [10,11];10 identifier [] fps;11 integer [] 1;12 default_parameter [13,14];13 identifier [] ... | Make the movie using either ffmpeg or gifsicle. |
0 module [1];1 function_definition [2,3,5];2 function_name [] gather_meta;3 parameters [4];4 identifier [] self;5 block [6,23,36,107];6 if_statement [7,20];7 not_operator [8];8 call [9,14];9 attribute [10,13];10 attribute [11,12];11 identifier [] os;12 identifier [] path;13 identifier [] exists;14 argument_list [15];15... | Return the meta file. |
0 module [1];1 function_definition [2,3,6];2 function_name [] add_grant;3 parameters [4,5];4 identifier [] self;5 identifier [] grant;6 block [7,20];7 if_statement [8,14];8 not_operator [9];9 call [10,11];10 identifier [] isinstance;11 argument_list [12,13];12 identifier [] grant;13 identifier [] AccessTokenGrant;14 bl... | Add a grant to this AccessToken |
0 module [1];1 function_definition [2,3,7];2 function_name [] row_to_obj;3 parameters [4,5,6];4 identifier [] self;5 identifier [] row;6 identifier [] cur;7 block [8,18,38];8 expression_statement [9];9 assignment [10,11];10 identifier [] obj;11 call [12,17];12 attribute [13,16];13 attribute [14,15];14 identifier [] tor... | Convert a SQL row to an object supporting dict and attribute access. |
0 module [1];1 function_definition [2,3,6];2 function_name [] startup;3 parameters [4,5];4 identifier [] self;5 identifier [] app;6 block [7,18,89];7 expression_statement [8];8 assignment [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] local;12 call [13,14];13 identifier [] slocal;14 argument_list [15... | Initialize a local namespace and setup Jinja2. |
0 module [1];1 function_definition [2,3,7];2 function_name [] query_geonames_country;3 parameters [4,5,6];4 identifier [] self;5 identifier [] placename;6 identifier [] country;7 block [8,27,55,114,123];8 expression_statement [9];9 assignment [10,11];10 identifier [] q;11 dictionary [12];12 pair [13,14];13 string [] mu... | Like query_geonames, but this time limited to a specified country. |
0 module [1];1 function_definition [2,3,6];2 function_name [] _advance_cluster_time;3 parameters [4,5];4 identifier [] self;5 identifier [] cluster_time;6 block [7];7 if_statement [8,13,20];8 comparison_operator [9,12] is;9 attribute [10,11];10 identifier [] self;11 identifier [] _cluster_time;12 None [];13 block [14];... | Internal cluster time helper. |
0 module [1];1 function_definition [2,3,4];2 function_name [] start_parent;3 parameters [];4 block [5];5 while_statement [6,7];6 True [];7 block [8,19,27,33,45];8 expression_statement [9];9 assignment [10,11];10 identifier [] args;11 binary_operator [12,16] +;12 list [13] [sys.executable];13 attribute [14,15];14 identi... | Start the parent that will simply run the child forever until stopped. |
0 module [1];1 function_definition [2,3,6];2 function_name [] add;3 parameters [4,5];4 identifier [] self;5 identifier [] items;6 block [7];7 with_statement [8,11];8 with_clause [9];9 with_item [10];10 identifier [] _presub_lock;11 block [12,18,43];12 expression_statement [13];13 call [14,17];14 attribute [15,16];15 id... | Add entry to global presubs list |
0 module [1];1 function_definition [2,3,6];2 function_name [] _checkremove_que;3 parameters [4,5];4 identifier [] self;5 identifier [] word;6 block [7,11,69,91];7 expression_statement [8];8 assignment [9,10];9 identifier [] in_que_pass_list;10 False [];11 expression_statement [12];12 assignment [13,14];13 identifier []... | If word ends in -que and if word is not in pass list, strip -que |
0 module [1];1 function_definition [2,3,10];2 function_name [] GlorotUniformInitializer;3 parameters [4,7];4 default_parameter [5,6];5 identifier [] out_dim;6 integer [] 0;7 default_parameter [8,9];8 identifier [] in_dim;9 integer [] 1;10 block [11,71];11 function_definition [12,13,16];12 function_name [] init;13 param... | An initializer function for random uniform Glorot-scaled coefficients. |
0 module [1];1 function_definition [2,3,5];2 function_name [] save_new_channel;3 parameters [4];4 identifier [] self;5 block [6,14,38,44];6 expression_statement [7];7 assignment [8,9];8 identifier [] form_info;9 subscript [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] input;13 string [] form;14 exp... | It saves new channel according to specified channel features. |
0 module [1];1 function_definition [2,3,9];2 function_name [] render_table;3 parameters [4,5,6];4 identifier [] output_dir;5 identifier [] packages;6 default_parameter [7,8];7 identifier [] jenv;8 identifier [] JENV;9 block [10,16];10 expression_statement [11];11 assignment [12,13];12 identifier [] destination_filename... | Render and output dispatch table |
0 module [1];1 function_definition [2,3,8];2 function_name [] compose_post;3 parameters [4,5,6,7];4 identifier [] apikey;5 identifier [] resize;6 identifier [] rotation;7 identifier [] noexif;8 block [9,14,19,38,106,117];9 expression_statement [10];10 call [11,12];11 identifier [] check_rotation;12 argument_list [13];1... | composes basic post requests |
0 module [1];1 function_definition [2,3,5];2 function_name [] to_dict;3 parameters [4];4 identifier [] self;5 block [6,17,25];6 expression_statement [7];7 assignment [8,9];8 identifier [] as_dict;9 call [10,11];10 identifier [] dict;11 argument_list [12];12 boolean_operator [13,16] or;13 attribute [14,15];14 identifier... | Return a dictionary representation of the exception. |
0 module [1];1 function_definition [2,3,6];2 function_name [] makeService;3 parameters [4,5];4 identifier [] self;5 identifier [] options;6 block [7];7 return_statement [8];8 call [9,10];9 identifier [] BrokerService;10 argument_list [11,16,21,26,31,36];11 keyword_argument [12,13];12 identifier [] port;13 subscript [14... | Construct a Broker Server |
0 module [1];1 function_definition [2,3,6];2 function_name [] overloaded;3 parameters [4,5];4 identifier [] self;5 identifier [] client_addr;6 block [7,11,26];7 expression_statement [8];8 assignment [9,10];9 identifier [] overloaded_txt;10 string [] HTTP/1.0 429 Too Many Requests\r\nServer: BaseHTTP/0.3 Python/2.7.14+\... | Deflect if we have too many inbound requests |
0 module [1];1 function_definition [2,3,12,14];2 function_name [] rename_keys;3 parameters [4,8];4 typed_parameter [5,6];5 identifier [] record;6 type [7];7 identifier [] Mapping;8 typed_parameter [9,10];9 identifier [] key_map;10 type [11];11 identifier [] Mapping;12 type [13];13 identifier [] dict;14 block [15,21,48]... | New record with same keys or renamed keys if key found in key_map. |
0 module [1];1 function_definition [2,3,7];2 function_name [] replace;3 parameters [4,5,6];4 identifier [] self;5 identifier [] name;6 identifier [] newname;7 block [8,20,32,55,68,82];8 if_statement [9,17];9 not_operator [10];10 call [11,14];11 attribute [12,13];12 identifier [] re;13 identifier [] match;14 argument_li... | Replace all occurrences of name with newname |
0 module [1];1 function_definition [2,3,13,19];2 function_name [] abbrev_hook;3 parameters [4,5];4 identifier [] self;5 typed_parameter [6,7];6 identifier [] data;7 type [8];8 attribute [9,12];9 attribute [10,11];10 identifier [] cmd2;11 identifier [] plugin;12 identifier [] PostparsingData;13 type [14];14 attribute [1... | Accept unique abbreviated commands |
0 module [1];1 function_definition [2,3,6];2 function_name [] show_command;3 parameters [4,5];4 identifier [] endpoint_id;5 identifier [] rule_id;6 block [7,13,23];7 expression_statement [8];8 assignment [9,10];9 identifier [] client;10 call [11,12];11 identifier [] get_client;12 argument_list [];13 expression_statemen... | Executor for `globus endpoint permission show` |
0 module [1];1 function_definition [2,3,8];2 function_name [] sortBy;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] val;7 None [];8 block [9];9 if_statement [10,13,66];10 comparison_operator [11,12] is not;11 identifier [] val;12 None [];13 block [14];14 if_statement [15,23,49];15 cal... | Sort the object's values by a criterion produced by an iterator. |
0 module [1];1 function_definition [2,3,5];2 function_name [] returner;3 parameters [4];4 identifier [] ret;5 block [6,13,21,32,51,70,84,96];6 expression_statement [7];7 assignment [8,9];8 identifier [] _options;9 call [10,11];10 identifier [] _get_options;11 argument_list [12];12 identifier [] ret;13 expression_statem... | Send a message to Nagios with the data |
0 module [1];1 function_definition [2,3,9];2 function_name [] search_name;3 parameters [4,5,6];4 identifier [] self;5 identifier [] name;6 default_parameter [7,8];7 identifier [] dom;8 None [];9 block [10,21];10 if_statement [11,14];11 comparison_operator [12,13] is;12 identifier [] dom;13 None [];14 block [15];15 expr... | name find function abbreviation |
0 module [1];1 function_definition [2,3,6];2 function_name [] newsnr_threshold;3 parameters [4,5];4 identifier [] self;5 identifier [] threshold;6 block [7,22,58];7 if_statement [8,14];8 not_operator [9];9 attribute [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] opt;13 identifier [] chisq_bins;14 b... | Remove events with newsnr smaller than given threshold |
0 module [1];1 function_definition [2,3,8];2 function_name [] invalid_kwargs;3 parameters [4,5];4 identifier [] invalid_kwargs;5 default_parameter [6,7];6 identifier [] raise_exc;7 True [];8 block [9,44,59];9 if_statement [10,11];10 identifier [] invalid_kwargs;11 block [12];12 if_statement [13,18];13 call [14,15];14 i... | Raise a SaltInvocationError if invalid_kwargs is non-empty |
0 module [1];1 function_definition [2,3,5];2 function_name [] create_api_environment;3 parameters [4];4 identifier [] self;5 block [6];6 return_statement [7];7 call [8,9];8 identifier [] ApiEnvironment;9 argument_list [10,13,16,19];10 attribute [11,12];11 identifier [] self;12 identifier [] networkapi_url;13 attribute ... | Get an instance of Api Environment services facade. |
0 module [1];1 function_definition [2,3,5];2 function_name [] _get_url_path;3 parameters [4];4 identifier [] list_name;5 block [6,15];6 expression_statement [7];7 assignment [8,9];8 identifier [] access_key;9 call [10,11];10 identifier [] getattr;11 argument_list [12,13,14];12 identifier [] settings;13 string [] RESTCL... | Live Dao requires RESTCLIENTS_MAILMAN_KEY in the settings.py |
0 module [1];1 function_definition [2,3,5];2 function_name [] _record_offset;3 parameters [4];4 identifier [] self;5 block [6,16];6 expression_statement [7];7 assignment [8,9];8 identifier [] offset;9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] blob_file;14 identifier [... | Stores the current file pointer position |
0 module [1];1 function_definition [2,3,5];2 function_name [] find_path_join_using_plus;3 parameters [4];4 identifier [] node;5 block [6];6 return_statement [7];7 () [8];8 boolean_operator [9,60] and;9 boolean_operator [10,49] and;10 boolean_operator [11,38] and;11 boolean_operator [12,29] and;12 boolean_operator [13,2... | Finds joining path with plus |
0 module [1];1 function_definition [2,3,5];2 function_name [] existing_analysis;3 parameters [4];4 identifier [] using;5 block [6,15,25,63];6 expression_statement [7];7 assignment [8,9];8 identifier [] es;9 call [10,13];10 attribute [11,12];11 identifier [] connections;12 identifier [] get_connection;13 argument_list [... | Get the existing analysis for the `using` Elasticsearch connection |
0 module [1];1 function_definition [2,3,7];2 function_name [] flow_orifice_vert;3 parameters [4,5,6];4 identifier [] Diam;5 identifier [] Height;6 identifier [] RatioVCOrifice;7 block [8,18];8 expression_statement [9];9 call [10,13];10 attribute [11,12];11 identifier [] ut;12 identifier [] check_range;13 argument_list ... | Return the vertical flow rate of the orifice. |
0 module [1];1 function_definition [2,3,9];2 function_name [] make_exporter_resources;3 parameters [4,5,6];4 identifier [] nb_name;5 identifier [] out_folder;6 default_parameter [7,8];7 identifier [] images_folder;8 None [];9 block [10,17,26,34,42,48,54];10 expression_statement [11];11 assignment [12,13];12 identifier ... | Creates resources dict for the exporter |
0 module [1];1 function_definition [2,3,6];2 function_name [] _escape_attribute_quotes;3 parameters [4,5];4 identifier [] self;5 identifier [] v;6 block [7,11,15,84];7 expression_statement [8];8 assignment [9,10];9 identifier [] escaped;10 list [] [];11 expression_statement [12];12 assignment [13,14];13 identifier [] i... | Escapes quotes with a backslash, except those inside a Django tag |
0 module [1];1 function_definition [2,3,9];2 function_name [] _mid;3 parameters [4,5,6];4 identifier [] string;5 identifier [] start;6 default_parameter [7,8];7 identifier [] end;8 None [];9 block [10,22];10 if_statement [11,14];11 comparison_operator [12,13] is;12 identifier [] end;13 None [];14 block [15];15 expressi... | Returns a substring delimited by start and end position. |
0 module [1];1 function_definition [2,3,5];2 function_name [] run;3 parameters [4];4 identifier [] self;5 block [6,14,23,35,44,54,62,68,76];6 expression_statement [7];7 assignment [8,9];8 identifier [] files_to_download;9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] get_files_to_download;13 ... | Download the contents of the specified project name or id to dest_directory. |
0 module [1];1 function_definition [2,3,5];2 function_name [] parse_intervals;3 parameters [4];4 identifier [] diff_report;5 block [6];6 for_statement [7,8,11];7 identifier [] patch;8 attribute [9,10];9 identifier [] diff_report;10 identifier [] patch_set;11 block [12,40];12 try_statement [13,36];13 block [14,25];14 ex... | Parse a diff into an iterator of Intervals. |
0 module [1];1 function_definition [2,3,5];2 function_name [] validate_relationship;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,14];7 comparison_operator [8,11] not in;8 attribute [9,10];9 identifier [] self;10 identifier [] relationship;11 attribute [12,13];12 identifier [] self;13 identifier [... | Ensure relationship is of a certain type. |
0 module [1];1 function_definition [2,3,8];2 function_name [] observe_root_state_assignments;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] model;6 identifier [] prop_name;7 identifier [] info;8 block [9,23];9 if_statement [10,13];10 subscript [11,12];11 identifier [] info;12 string [] old;13 block [14];14... | The method relieves observed root_state models and observes newly assigned root_state models. |
0 module [1];1 function_definition [2,3,8];2 function_name [] reverse_complement;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] is_RNA;7 None [];8 block [9,17];9 expression_statement [10];10 call [11,14];11 attribute [12,13];12 identifier [] Sequence;13 identifier [] reverseComplement... | Reverse complement this read in-place. |
0 module [1];1 function_definition [2,3,5];2 function_name [] info;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,12,20];7 comparison_operator [8,11] not in;8 attribute [9,10];9 identifier [] self;10 identifier [] name;11 identifier [] jobs;12 block [13];13 return_statement [14];14 dictionary [15];... | Get the existing job information dictionary |
0 module [1];1 function_definition [2,3,7];2 function_name [] last;3 parameters [4];4 default_parameter [5,6];5 identifier [] predicate;6 None [];7 block [8,17,28];8 expression_statement [9];9 assignment [10,11];10 identifier [] predicate;11 conditional_expression [12,13,16] if;12 identifier [] true;13 comparison_opera... | Create a transducer which obtains the last item. |
0 module [1];1 function_definition [2,3,5];2 function_name [] send_pending_requests;3 parameters [4];4 identifier [] self;5 block [6];6 try_statement [7,70];7 block [8,52,68];8 with_statement [9,14];9 with_clause [10];10 with_item [11];11 attribute [12,13];12 identifier [] self;13 identifier [] _lock;14 block [15,33,43... | Can block on network if request is larger than send_buffer_bytes |
0 module [1];1 function_definition [2,3,6];2 function_name [] field_cache_to_index_pattern;3 parameters [4,5];4 identifier [] self;5 identifier [] field_cache;6 block [7,11,17,25,41,55];7 expression_statement [8];8 assignment [9,10];9 identifier [] mapping_dict;10 dictionary [];11 expression_statement [12];12 assignmen... | Return a .kibana index-pattern doc_type |
0 module [1];1 function_definition [2,3,6];2 function_name [] _get_external_accounts;3 parameters [4,5];4 identifier [] self;5 identifier [] locals;6 block [7,13,22,29,45,119];7 expression_statement [8];8 assignment [9,10];9 identifier [] users;10 call [11,12];11 identifier [] dict;12 argument_list [];13 expression_sta... | Return all known accounts, excluding local accounts. |
0 module [1];1 function_definition [2,3,5];2 function_name [] reset;3 parameters [4];4 identifier [] self;5 block [6,35];6 if_statement [7,14];7 comparison_operator [8,11] >;8 attribute [9,10];9 identifier [] self;10 identifier [] __row_number;11 attribute [12,13];12 identifier [] self;13 identifier [] __sample_size;14... | Resets the stream pointer to the beginning of the file. |
0 module [1];1 function_definition [2,3,7];2 function_name [] from_info;3 parameters [4,5,6];4 identifier [] cls;5 identifier [] container;6 identifier [] info_obj;7 block [8,22];8 expression_statement [9];9 assignment [10,11];10 identifier [] create_fn;11 conditional_expression [12,15,18,19] if;12 attribute [13,14];13... | Create from subdirectory or file info object. |
0 module [1];1 function_definition [2,3,7];2 function_name [] remove;3 parameters [4,5,6];4 identifier [] self;5 identifier [] order;6 identifier [] cells;7 block [8,14,23];8 expression_statement [9];9 assignment [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] _normalized;13 False [];14 expression_s... | Remove cells at a given order from the MOC. |
0 module [1];1 function_definition [2,3,5];2 function_name [] stop;3 parameters [4];4 identifier [] self;5 block [6,13];6 expression_statement [7];7 yield [8];8 call [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] _stop_ubridge;12 argument_list [];13 with_statement [14,21];14 with_clause [15];15 with_... | Stops this QEMU VM. |
0 module [1];1 function_definition [2,3,4];2 function_name [] purge;3 parameters [];4 block [5,10,22,39,51,68,80,97,109,126,138,155,167];5 expression_statement [6];6 call [7,8];7 identifier [] print;8 argument_list [9];9 string [] Purging the Blended files!;10 expression_statement [11];11 assignment [12,13];12 identifi... | Removes all files generated by Blended |
0 module [1];1 function_definition [2,3,5];2 function_name [] to_json;3 parameters [4];4 identifier [] self;5 block [6];6 return_statement [7];7 dictionary [8,13,18,23,28];8 pair [9,10];9 string [] hum_type;10 attribute [11,12];11 identifier [] self;12 identifier [] hum_type;13 pair [14,15];14 string [] hum_value;15 at... | Convert the Humidity Condition to a dictionary. |
0 module [1];1 function_definition [2,3,5];2 function_name [] reset;3 parameters [4];4 identifier [] self;5 block [6,23];6 expression_statement [7];7 call [8,13];8 attribute [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] stack;12 identifier [] append;13 argument_list [14];14 call [15,16];15 identifie... | Used if you need to recursively parse forms. |
0 module [1];1 function_definition [2,3,6];2 function_name [] disambiguate_fname;3 parameters [4,5];4 identifier [] files_path_list;5 identifier [] filename;6 block [7,18,26,163];7 expression_statement [8];8 assignment [9,10];9 identifier [] fname;10 call [11,16];11 attribute [12,15];12 attribute [13,14];13 identifier ... | Get tab title without ambiguation. |
0 module [1];1 function_definition [2,3,5];2 function_name [] close;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,10];7 attribute [8,9];8 identifier [] self;9 identifier [] is_open;10 block [11,17,25,36,46,55];11 expression_statement [12];12 assignment [13,14];13 identifier [] message_input;14 cal... | Sends a shutdown signal to the unity environment, and closes the grpc connection. |
0 module [1];1 function_definition [2,3,10];2 function_name [] move;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] path;6 identifier [] dest;7 default_parameter [8,9];8 identifier [] raise_if_exists;9 False [];10 block [11,29,42];11 if_statement [12,21];12 boolean_operator [13,14] and;13 identifier [] rais... | Moves a single file from path to dest |
0 module [1];1 function_definition [2,3,13];2 function_name [] histogram2d;3 parameters [4,5,6,9,11];4 identifier [] data1;5 identifier [] data2;6 default_parameter [7,8];7 identifier [] bins;8 None [];9 list_splat_pattern [10];10 identifier [] args;11 dictionary_splat_pattern [12];12 identifier [] kwargs;13 block [14,... | Facade function to create 2D histogram using dask. |
0 module [1];1 function_definition [2,3,5];2 function_name [] session_context;3 parameters [4];4 identifier [] fn;5 block [6,53];6 decorated_definition [7,14];7 decorator [8];8 call [9,12];9 attribute [10,11];10 identifier [] functools;11 identifier [] wraps;12 argument_list [13];13 identifier [] fn;14 function_definit... | Handles session setup and teardown |
0 module [1];1 function_definition [2,3,7];2 function_name [] _subset_by_support;3 parameters [4,5,6];4 identifier [] orig_vcf;5 identifier [] cmp_calls;6 identifier [] data;7 block [8,18,31,87];8 expression_statement [9];9 assignment [10,11];10 identifier [] cmp_vcfs;11 list_comprehension [12,15];12 subscript [13,14];... | Subset orig_vcf to calls also present in any of the comparison callers. |
0 module [1];1 function_definition [2,3,16];2 function_name [] persistant_error;3 parameters [4,5,6,9,12,14];4 identifier [] request;5 identifier [] message;6 default_parameter [7,8];7 identifier [] extra_tags;8 string [];9 default_parameter [10,11];10 identifier [] fail_silently;11 False [];12 list_splat_pattern [13];... | Adds a persistant message with the ``ERROR`` level. |
0 module [1];1 function_definition [2,3,5];2 function_name [] corethreads;3 parameters [4];4 identifier [] self;5 block [6,14,50,94,102];6 expression_statement [7];7 call [8,9];8 identifier [] printtime;9 argument_list [10,11];10 string [] Creating CDS files and finding core genes;11 attribute [12,13];12 identifier [] ... | Create a .cds file consisting of fasta records of CDS features for each strain |
0 module [1];1 function_definition [2,3,6];2 function_name [] from_bytes;3 parameters [4,5];4 identifier [] cls;5 identifier [] data;6 block [7,24,30,44,50,67,71,77,91];7 expression_statement [8];8 assignment [9,10];9 identifier [] len_username;10 call [11,14];11 attribute [12,13];12 identifier [] int;13 identifier [] ... | I am so sorry. |
0 module [1];1 function_definition [2,3,4];2 function_name [] list_clients;3 parameters [];4 block [5,21];5 expression_statement [6];6 assignment [7,8];7 identifier [] p;8 binary_operator [9,10] %;9 string [] %s/pymux.sock.%s.*;10 tuple [11,16];11 call [12,15];12 attribute [13,14];13 identifier [] tempfile;14 identifie... | List all the servers that are running. |
0 module [1];1 function_definition [2,3,6];2 function_name [] from_list;3 parameters [4,5];4 identifier [] cls;5 identifier [] values;6 block [7,13,24];7 expression_statement [8];8 assignment [9,10];9 identifier [] self;10 call [11,12];11 identifier [] cls;12 argument_list [];13 for_statement [14,15,16];14 identifier [... | Construct a tree from a list with paths. |
0 module [1];1 function_definition [2,3,6];2 function_name [] demo_supercut;3 parameters [4,5];4 identifier [] composition;5 identifier [] padding;6 block [7];7 for_statement [8,11,15];8 pattern_list [9,10];9 identifier [] i;10 identifier [] c;11 call [12,13];12 identifier [] enumerate;13 argument_list [14];14 identifi... | Print out timespans to be cut followed by the line number in the srt. |
0 module [1];1 function_definition [2,3,12];2 function_name [] soundfield;3 parameters [4,8];4 typed_parameter [5,6];5 identifier [] dev;6 type [7];7 identifier [] Device;8 typed_parameter [9,10];9 identifier [] soundfield;10 type [11];11 identifier [] str;12 block [13,27,37];13 if_statement [14,17];14 comparison_opera... | Get or set sound field. |
0 module [1];1 function_definition [2,3,5];2 function_name [] delete_project;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,10];7 attribute [8,9];8 identifier [] self;9 identifier [] current_active_project;10 block [11,17,25,35,68];11 expression_statement [12];12 call [13,16];13 attribute [14,15];1... | Delete the current project without deleting the files in the directory. |
0 module [1];1 function_definition [2,3,5];2 function_name [] _get_cols;3 parameters [4];4 identifier [] row_content;5 block [6,10,14,18,74];6 expression_statement [7];7 assignment [8,9];8 identifier [] cols;9 list [] [];10 expression_statement [11];11 assignment [12,13];12 identifier [] subcell_col;13 list [] [];14 ex... | Counting the number columns based on the content of this row |
0 module [1];1 function_definition [2,3,9];2 function_name [] zone_height_min2max;3 parameters [4,5,6];4 identifier [] idf;5 identifier [] zonename;6 default_parameter [7,8];7 identifier [] debug;8 False [];9 block [10,20,32,48,63,76,87,94,101,107];10 expression_statement [11];11 assignment [12,13];12 identifier [] zon... | zone height = max-min |
0 module [1];1 function_definition [2,3,16];2 function_name [] embeddedFileAdd;3 parameters [4,5,6,7,10,13];4 identifier [] self;5 identifier [] buffer;6 identifier [] name;7 default_parameter [8,9];8 identifier [] filename;9 None [];10 default_parameter [11,12];11 identifier [] ufilename;12 None [];13 default_paramete... | Embed a new file. |
0 module [1];1 function_definition [2,3,7];2 function_name [] format_field;3 parameters [4,5,6];4 identifier [] self;5 identifier [] value;6 identifier [] format_spec;7 block [8,31];8 if_statement [9,14];9 call [10,11];10 identifier [] isinstance;11 argument_list [12,13];12 identifier [] value;13 identifier [] MissingF... | When field missing, return original spec. |
0 module [1];1 function_definition [2,3,5];2 function_name [] _make_spec_file;3 parameters [4];4 identifier [] self;5 block [6,21,28,35,42];6 expression_statement [7];7 assignment [8,9];8 identifier [] spec_file;9 call [10,19];10 attribute [11,18];11 attribute [12,17];12 attribute [13,16];13 attribute [14,15];14 identi... | Customize spec file inserting %config section |
0 module [1];1 function_definition [2,3,5];2 function_name [] enclosure_directed;3 parameters [4];4 identifier [] self;5 block [6,19,27];6 expression_statement [7];7 assignment [8,11];8 pattern_list [9,10];9 identifier [] root;10 identifier [] enclosure;11 call [12,15];12 attribute [13,14];13 identifier [] polygons;14 ... | Networkx DiGraph of polygon enclosure |
0 module [1];1 function_definition [2,3,9];2 function_name [] callRemote;3 parameters [4,5,7];4 identifier [] self;5 list_splat_pattern [6];6 identifier [] a;7 dictionary_splat_pattern [8];8 identifier [] kw;9 block [10,25];10 if_statement [11,15];11 not_operator [12];12 attribute [13,14];13 identifier [] self;14 ident... | Make a callRemote request of the JSONRPCClientFactory. |
0 module [1];1 function_definition [2,3,31];2 function_name [] pretty_path;3 parameters [4,5];4 identifier [] path;5 default_parameter [6,7];6 identifier [] _home_re;7 call [8,11];8 attribute [9,10];9 identifier [] re;10 identifier [] compile;11 argument_list [12];12 binary_operator [13,14] +;13 string [] ^;14 call [15... | Prettify path for humans, and make it Unicode. |
0 module [1];1 function_definition [2,3,5];2 function_name [] create;3 parameters [4];4 identifier [] ctx;5 block [6,9,22,34,42,50];6 import_statement [7];7 dotted_name [8];8 identifier [] shutil;9 expression_statement [10];10 assignment [11,14];11 pattern_list [12,13];12 identifier [] this_dir;13 identifier [] this_fi... | Create default config file |
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