sequence
stringlengths
388
5.57k
docstring
stringlengths
11
171
0 module [1];1 function_definition [2,3,9];2 function_name [] box_text;3 parameters [4,5,6];4 identifier [] text;5 identifier [] width;6 default_parameter [7,8];7 identifier [] offset;8 integer [] 0;9 block [10,25,44,57];10 expression_statement [11];11 assignment [12,13];12 identifier [] box;13 binary_operator [14,24] ...
Return text inside an ascii textbox
0 module [1];1 function_definition [2,3,5];2 function_name [] match_comment;3 parameters [4];4 identifier [] self;5 block [6,18];6 expression_statement [7];7 assignment [8,9];8 identifier [] match;9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] match;13 argument_list [14,15];14 string [] r"<%...
matches the multiline version of a comment
0 module [1];1 function_definition [2,3,6];2 function_name [] _change_kind;3 parameters [4,5];4 identifier [] self;5 identifier [] post_uid;6 block [7,15,27,39,45];7 expression_statement [8];8 assignment [9,10];9 identifier [] post_data;10 call [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] get_pos...
To modify the category of the post, and kind.
0 module [1];1 function_definition [2,3,8];2 function_name [] acknowledge_streamer;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] index;6 identifier [] ack;7 identifier [] force;8 block [9,28,40,68,80];9 if_statement [10,20];10 comparison_operator [11,12] >=;11 identifier [] index;12 call [13,14];13 identi...
Acknowledge a streamer value as received from the remote side.
0 module [1];1 function_definition [2,3,11];2 function_name [] merge_nested_environment_dicts;3 parameters [4,5,8];4 identifier [] env_dicts;5 default_parameter [6,7];6 identifier [] env_name;7 None [];8 default_parameter [9,10];9 identifier [] env_root;10 None [];11 block [12,41,72,98,118];12 if_statement [13,34];13 c...
Return single-level dictionary from dictionary of dictionaries.
0 module [1];1 function_definition [2,3,8];2 function_name [] match;3 parameters [4,5];4 identifier [] tgt;5 default_parameter [6,7];6 identifier [] opts;7 None [];8 block [9,17,68];9 if_statement [10,12];10 not_operator [11];11 identifier [] opts;12 block [13];13 expression_statement [14];14 assignment [15,16];15 iden...
Matches based on range cluster
0 module [1];1 function_definition [2,3,7];2 function_name [] register_foreign_device;3 parameters [4,5,6];4 identifier [] self;5 identifier [] addr;6 identifier [] ttl;7 block [8,20,49,86,92,100];8 if_statement [9,10];9 identifier [] _debug;10 block [11];11 expression_statement [12];12 call [13,16];13 attribute [14,15...
Add a foreign device to the FDT.
0 module [1];1 function_definition [2,3,8];2 function_name [] _write;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] stream;6 identifier [] text;7 identifier [] byte_order;8 block [9];9 if_statement [10,11,19];10 identifier [] text;11 block [12];12 expression_statement [13];13 call [14,17];14 attribute [15,...
Write the data to a PLY file.
0 module [1];1 function_definition [2,3,13];2 function_name [] open;3 parameters [4,5,6,9];4 identifier [] self;5 identifier [] filename;6 default_parameter [7,8];7 identifier [] mode;8 string [] r;9 default_parameter [10,11];10 identifier [] bufsize;11 unary_operator [12] -;12 integer [] 1;13 block [14,22];14 expressi...
Open a file on the remote system and return a file-like object.
0 module [1];1 function_definition [2,3,5];2 function_name [] setup_buttons;3 parameters [4];4 identifier [] self;5 block [6,36,43,92];6 expression_statement [7];7 assignment [8,11];8 attribute [9,10];9 identifier [] self;10 identifier [] fromcursor_btn;11 call [12,13];12 identifier [] create_toolbutton;13 argument_lis...
Setup the buttons of the outline explorer widget toolbar.
0 module [1];1 function_definition [2,3,5];2 function_name [] to_dict;3 parameters [4];4 identifier [] self;5 block [6];6 return_statement [7];7 dictionary [8,22,27,32,44];8 pair [9,10];9 string [] id;10 binary_operator [11,16] +;11 binary_operator [12,15] +;12 attribute [13,14];13 identifier [] self;14 identifier [] m...
Return a dict representation of KnwKBRVAL.
0 module [1];1 function_definition [2,3,8];2 function_name [] table_path;3 parameters [4,5,6,7];4 identifier [] cls;5 identifier [] project;6 identifier [] instance;7 identifier [] table;8 block [9];9 return_statement [10];10 call [11,18];11 attribute [12,17];12 attribute [13,16];13 attribute [14,15];14 identifier [] g...
Return a fully-qualified table string.
0 module [1];1 function_definition [2,3,9];2 function_name [] to_plot_units;3 parameters [4,5,6];4 identifier [] self;5 identifier [] data;6 default_parameter [7,8];7 identifier [] dtype_vert;8 False [];9 block [10,55,78];10 if_statement [11,17,26,40];11 boolean_operator [12,15] or;12 comparison_operator [13,14] ==;13 ...
Convert the given data to plotting units.
0 module [1];1 function_definition [2,3,9];2 function_name [] success;3 parameters [4,5,6];4 identifier [] self;5 identifier [] objects;6 default_parameter [7,8];7 identifier [] message;8 None [];9 block [10,30,40,61];10 if_statement [11,17];11 call [12,15];12 attribute [13,14];13 identifier [] self;14 identifier [] is...
Redirects the user to success page with informative message
0 module [1];1 function_definition [2,3,5];2 function_name [] _load_meta_cache;3 parameters [4];4 identifier [] self;5 block [6];6 try_statement [7,53];7 block [8];8 if_statement [9,14,24];9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] _should_invalidate_cache;13 argument_list [];14 block [1...
Try to load metadata from file.
0 module [1];1 function_definition [2,3,9];2 function_name [] story_archive;3 parameters [4,5,6];4 identifier [] request;5 identifier [] slug;6 default_parameter [7,8];7 identifier [] template_name;8 string [] staffmembers/story_archive.html;9 block [10,23,27,69];10 expression_statement [11];11 assignment [12,13];12 id...
Return the list of stories written by this staff member
0 module [1];1 function_definition [2,3,8];2 function_name [] accept_quality;3 parameters [4,5];4 identifier [] accept;5 default_parameter [6,7];6 identifier [] default;7 integer [] 1;8 block [9,13,65];9 expression_statement [10];10 assignment [11,12];11 identifier [] quality;12 identifier [] default;13 if_statement [1...
Separates out the quality score from the accepted content_type
0 module [1];1 function_definition [2,3,5];2 function_name [] directory_files;3 parameters [4];4 identifier [] path;5 block [6];6 for_statement [7,8,14];7 identifier [] entry;8 call [9,12];9 attribute [10,11];10 identifier [] os;11 identifier [] scandir;12 argument_list [13];13 identifier [] path;14 block [15];15 if_st...
Yield directory file names.
0 module [1];1 function_definition [2,3,4];2 function_name [] detect_vcs;3 parameters [];4 block [5,16];5 expression_statement [6];6 assignment [7,8];7 identifier [] location;8 call [9,14];9 attribute [10,13];10 attribute [11,12];11 identifier [] os;12 identifier [] path;13 identifier [] abspath;14 argument_list [15];1...
Detect the version control system used for the current directory.
0 module [1];1 function_definition [2,3,10];2 function_name [] local_bifurcation_angles;3 parameters [4,5];4 identifier [] neurites;5 default_parameter [6,7];6 identifier [] neurite_type;7 attribute [8,9];8 identifier [] NeuriteType;9 identifier [] all;10 block [11];11 return_statement [12];12 call [13,14];13 identifie...
Get a list of local bifurcation angles in a collection of neurites
0 module [1];1 function_definition [2,3,7];2 function_name [] validate;3 parameters [4,5,6];4 identifier [] self;5 identifier [] instance;6 identifier [] value;7 block [8,19,42];8 if_statement [9,16];9 call [10,11];10 identifier [] isinstance;11 argument_list [12,13];12 identifier [] value;13 attribute [14,15];14 ident...
Check if value is a valid datetime object or JSON datetime string
0 module [1];1 function_definition [2,3,8];2 function_name [] _SendTerminationMessage;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] status;7 None [];8 block [9,20,33,41,49,57,65,73,83,91,99,105,149,158];9 if_statement [10,18];10 not_operator [11];11 attribute [12,17];12 attribute [13...
This notifies the parent flow of our termination.
0 module [1];1 function_definition [2,3,5];2 function_name [] read_kioslaverc;3 parameters [4];4 identifier [] kde_config_dir;5 block [6,10,22,130,135];6 expression_statement [7];7 assignment [8,9];8 identifier [] data;9 dictionary [];10 expression_statement [11];11 assignment [12,13];12 identifier [] filename;13 call ...
Read kioslaverc into data dictionary.
0 module [1];1 function_definition [2,3,8];2 function_name [] render_to_response;3 parameters [4,5,6];4 identifier [] self;5 identifier [] form;6 dictionary_splat_pattern [7];7 identifier [] kwargs;8 block [9,18,53];9 expression_statement [10];10 assignment [11,12];11 identifier [] page;12 call [13,16];13 attribute [14...
Render Datatables expected JSON format
0 module [1];1 function_definition [2,3,9];2 function_name [] add_network_to_dhcp_agent;3 parameters [4,5,6];4 identifier [] self;5 identifier [] dhcp_agent;6 default_parameter [7,8];7 identifier [] body;8 None [];9 block [10];10 return_statement [11];11 call [12,15];12 attribute [13,14];13 identifier [] self;14 identi...
Adds a network to dhcp agent.
0 module [1];1 function_definition [2,3,5];2 function_name [] mean_crossings;3 parameters [4];4 identifier [] X;5 block [6,15,23,31,42,120];6 expression_statement [7];7 assignment [8,9];8 identifier [] X;9 call [10,13];10 attribute [11,12];11 identifier [] np;12 identifier [] atleast_3d;13 argument_list [14];14 identif...
Computes number of mean crossings for each variable in a segmented time series
0 module [1];1 function_definition [2,3,5];2 function_name [] can_execute;3 parameters [4];4 identifier [] self;5 block [6];6 return_statement [7];7 boolean_operator [8,12] and;8 not_operator [9];9 attribute [10,11];10 identifier [] self;11 identifier [] _disabled;12 call [13,14];13 identifier [] all;14 generator_expre...
True if we can execute the callback.
0 module [1];1 function_definition [2,3,5];2 function_name [] path;3 parameters [4];4 identifier [] self;5 block [6,17,21,52,67];6 expression_statement [7];7 assignment [8,9];8 identifier [] out;9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] datetime;14 identifier [] str...
Timestamp for placing into filepaths.
0 module [1];1 function_definition [2,3,5];2 function_name [] int32;3 parameters [4];4 identifier [] x;5 block [6,13,40];6 if_statement [7,10];7 comparison_operator [8,9] >;8 identifier [] x;9 integer [] 0xFFFFFFFF;10 block [11];11 raise_statement [12];12 identifier [] OverflowError;13 if_statement [14,17];14 compariso...
Return a signed or unsigned int
0 module [1];1 function_definition [2,3,5];2 function_name [] clean_slug;3 parameters [4];4 identifier [] self;5 block [6,18,24,43,59,74,78,82,99];6 expression_statement [7];7 assignment [8,9];8 identifier [] source;9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] cleaned_...
Generate a valid slug, in case the given one is taken
0 module [1];1 function_definition [2,3,10];2 function_name [] split_vcf;3 parameters [4,5,6,7];4 identifier [] in_file;5 identifier [] ref_file;6 identifier [] config;7 default_parameter [8,9];8 identifier [] out_dir;9 None [];10 block [11,35,39,121];11 if_statement [12,15];12 comparison_operator [13,14] is;13 identif...
Split a VCF file into separate files by chromosome.
0 module [1];1 function_definition [2,3,7];2 function_name [] next_tzolkin_haab;3 parameters [4,5,6];4 identifier [] tzolkin;5 identifier [] haab;6 identifier [] jd;7 block [8,19,27,36,53,64,72,81,98];8 expression_statement [9];9 assignment [10,11];10 identifier [] haabcount;11 call [12,13];12 identifier [] _haab_count...
For a given haab-tzolk'in combination, and a Julian day count, find the next occurrance of the combination after the date
0 module [1];1 function_definition [2,3,26];2 function_name [] calcTm;3 parameters [4,5,8,11,14,17,20,23];4 identifier [] seq;5 default_parameter [6,7];6 identifier [] mv_conc;7 integer [] 50;8 default_parameter [9,10];9 identifier [] dv_conc;10 integer [] 0;11 default_parameter [12,13];12 identifier [] dntp_conc;13 fl...
Return the tm of `seq` as a float.
0 module [1];1 function_definition [2,3,5];2 function_name [] authorize;3 parameters [4];4 identifier [] self;5 block [6,43];6 with_statement [7,25];7 with_clause [8];8 with_item [9];9 as_pattern [10,23];10 call [11,18];11 attribute [12,17];12 attribute [13,16];13 attribute [14,15];14 identifier [] salt;15 identifier [...
Prepare the master to expect a signing request
0 module [1];1 function_definition [2,3,5];2 function_name [] prompt_terminal;3 parameters [4];4 identifier [] path;5 block [6,45,58,69,80,88,121,130];6 function_definition [7,8,13];7 function_name [] rlinput;8 parameters [9,10];9 identifier [] prompt_msg;10 default_parameter [11,12];11 identifier [] prefill;12 string ...
Prompt for a new filename via terminal.
0 module [1];1 function_definition [2,3,5];2 function_name [] _int_size_to_type;3 parameters [4];4 identifier [] size;5 block [6,13,20,27];6 if_statement [7,10];7 comparison_operator [8,9] <=;8 identifier [] size;9 integer [] 8;10 block [11];11 return_statement [12];12 identifier [] ByteType;13 if_statement [14,17];14 ...
Return the Catalyst datatype from the size of integers.
0 module [1];1 function_definition [2,3,5,7];2 function_name [] create_workspace;3 parameters [4];4 identifier [] self;5 type [6];6 None [];7 block [8,41];8 function_definition [9,10,12];9 function_name [] create_clicked;10 parameters [11];11 identifier [] text;12 block [13];13 if_statement [14,15];14 identifier [] tex...
Pose a dialog to name and create a workspace.
0 module [1];1 function_definition [2,3,13];2 function_name [] print_result_from_timeit;3 parameters [4,7,10];4 default_parameter [5,6];5 identifier [] stmt;6 string [] pass;7 default_parameter [8,9];8 identifier [] setup;9 string [] pass;10 default_parameter [11,12];11 identifier [] number;12 integer [] 1000000;13 blo...
Clean function to know how much time took the execution of one statement
0 module [1];1 function_definition [2,3,9];2 function_name [] setup_logfile_raw;3 parameters [4,5,6];4 identifier [] self;5 identifier [] logfile;6 default_parameter [7,8];7 identifier [] mode;8 string [] w;9 block [10];10 expression_statement [11];11 assignment [12,15];12 attribute [13,14];13 identifier [] self;14 ide...
start logging raw bytes to the given logfile, without timestamps
0 module [1];1 function_definition [2,3,4];2 function_name [] salt_api;3 parameters [];4 block [5,10,20,25,37];5 import_statement [6];6 dotted_name [7,8,9];7 identifier [] salt;8 identifier [] utils;9 identifier [] process;10 expression_statement [11];11 call [12,19];12 attribute [13,18];13 attribute [14,17];14 attribu...
The main function for salt-api
0 module [1];1 function_definition [2,3,5];2 function_name [] params;3 parameters [4];4 identifier [] self;5 block [6,38];6 if_statement [7,12];7 comparison_operator [8,11] is;8 attribute [9,10];9 identifier [] self;10 identifier [] _GETPOST;11 None [];12 block [13,24];13 expression_statement [14];14 assignment [15,18]...
A combined MultiDict with POST and GET parameters.
0 module [1];1 function_definition [2,3,6];2 function_name [] conflicts_with;3 parameters [4,5];4 identifier [] self;5 identifier [] section;6 block [7,9,35];7 expression_statement [8];8 string [] Returns True if the given section conflicts with this time range.;9 for_statement [10,11,14];10 identifier [] p;11 attribut...
Returns True if the given section conflicts with this time range.
0 module [1];1 function_definition [2,3,6];2 function_name [] _get_tgt_length;3 parameters [4,5];4 identifier [] self;5 identifier [] var;6 block [7];7 if_statement [8,19,25];8 boolean_operator [9,14] or;9 comparison_operator [10,13] ==;10 attribute [11,12];11 identifier [] var;12 identifier [] type;13 string [] g;14 c...
Get the total length of the whole reference sequence
0 module [1];1 function_definition [2,3,8];2 function_name [] _modify_event;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] event_name;6 identifier [] method;7 identifier [] func;8 block [9,33,51];9 if_statement [10,15];10 comparison_operator [11,12] not in;11 identifier [] event_name;12 attribute [13,14];1...
Wrapper to call a list's method from one of the events
0 module [1];1 function_definition [2,3,5];2 function_name [] find_identifier;3 parameters [4];4 identifier [] self;5 block [6,14,21,27,49,84,113];6 expression_statement [7];7 assignment [8,9];8 identifier [] features;9 subscript [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] data;13 string [] feat...
Find a unique identifier for each feature, create it if needed.
0 module [1];1 function_definition [2,3,7];2 function_name [] write_csv_line;3 parameters [4,5,6];4 identifier [] mol;5 identifier [] csv_writer;6 identifier [] options;7 block [8,14,18,27,48,60,70,85];8 expression_statement [9];9 assignment [10,11];10 identifier [] status_field;11 attribute [12,13];12 identifier [] op...
Parse mol object and write a line to the csv file
0 module [1];1 function_definition [2,3,5];2 function_name [] on_scroll;3 parameters [4];4 identifier [] self;5 block [6,21,29,36,44,65,74];6 try_statement [7,16];7 block [8];8 expression_statement [9];9 assignment [10,11];10 identifier [] sw;11 subscript [12,15];12 attribute [13,14];13 identifier [] self;14 identifier...
Called to scroll text
0 module [1];1 function_definition [2,3,9];2 function_name [] until_state;3 parameters [4,5,6];4 identifier [] self;5 identifier [] state;6 default_parameter [7,8];7 identifier [] timeout;8 None [];9 block [10,30];10 if_statement [11,16];11 comparison_operator [12,13] not in;12 identifier [] state;13 attribute [14,15];...
Return a tornado Future that will resolve when the requested state is set
0 module [1];1 function_definition [2,3,5];2 function_name [] enqueue_jobs;3 parameters [4];4 identifier [] self;5 block [6,15,23,34,53];6 expression_statement [7];7 call [8,13];8 attribute [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] log;12 identifier [] debug;13 argument_list [14];14 string [] Ch...
Move scheduled jobs into queues.
0 module [1];1 function_definition [2,3,8,10];2 function_name [] validate_model_specification_file;3 parameters [4];4 typed_parameter [5,6];5 identifier [] file_path;6 type [7];7 identifier [] str;8 type [9];9 identifier [] str;10 block [11,29,41,53,60];11 if_statement [12,21];12 not_operator [13];13 call [14,19];14 at...
Ensures the provided file is a yaml file
0 module [1];1 function_definition [2,3,6];2 function_name [] write_data_to_file;3 parameters [4,5];4 identifier [] data;5 identifier [] filepath;6 block [7,28];7 try_statement [8,24];8 block [9];9 expression_statement [10];10 call [11,14];11 attribute [12,13];12 identifier [] os;13 identifier [] makedirs;14 argument_l...
Write data to file
0 module [1];1 function_definition [2,3,4];2 function_name [] iter_ROOT_classes;3 parameters [];4 block [5,9];5 expression_statement [6];6 assignment [7,8];7 identifier [] class_index;8 string [] http://root.cern.ch/root/html/ClassIndex.html;9 for_statement [10,11,25];10 identifier [] s;11 call [12,23];12 attribute [13...
Iterator over all available ROOT classes
0 module [1];1 function_definition [2,3,5];2 function_name [] DropTables;3 parameters [4];4 identifier [] self;5 block [6,23];6 expression_statement [7];7 assignment [8,11];8 pattern_list [9,10];9 identifier [] rows;10 identifier [] _;11 call [12,15];12 attribute [13,14];13 identifier [] self;14 identifier [] ExecuteQu...
Drop all existing tables.
0 module [1];1 function_definition [2,3,26];2 function_name [] delta_stream;3 parameters [4,5,8,11,20,23];4 identifier [] self;5 default_parameter [6,7];6 identifier [] target;7 string [] HEAD;8 default_parameter [9,10];9 identifier [] limit;10 None [];11 default_parameter [12,13];12 identifier [] sort;13 binary_operat...
Return an iterator of policy changes along a commit lineage in a repo.
0 module [1];1 function_definition [2,3,6];2 function_name [] file_matches_regexps;3 parameters [4,5];4 identifier [] filename;5 identifier [] patterns;6 block [7];7 return_statement [8];8 call [9,10];9 identifier [] any;10 generator_expression [11,18];11 call [12,15];12 attribute [13,14];13 identifier [] re;14 identif...
Does this filename match any of the regular expressions?
0 module [1];1 function_definition [2,3,4];2 function_name [] version;3 parameters [];4 block [5,9,38];5 expression_statement [6];6 assignment [7,8];7 identifier [] namespace;8 dictionary [];9 with_statement [10,27];10 with_clause [11];11 with_item [12];12 as_pattern [13,25];13 call [14,15];14 identifier [] open;15 arg...
Get the version number without importing the mrcfile package.
0 module [1];1 function_definition [2,3,10];2 function_name [] add;3 parameters [4,5,6,7,8,9];4 identifier [] self;5 identifier [] client_id;6 identifier [] email_address;7 identifier [] name;8 identifier [] access_level;9 identifier [] password;10 block [11,27,44];11 expression_statement [12];12 assignment [13,14];13 ...
Adds a person to a client. Password is optional and if not supplied, an invitation will be emailed to the person
0 module [1];1 function_definition [2,3,5];2 function_name [] write_nginx_config;3 parameters [4];4 identifier [] self;5 block [6,15,48,55,77,104,125,150,157];6 expression_statement [7];7 assignment [8,9];8 identifier [] log;9 call [10,13];10 attribute [11,12];11 identifier [] logging;12 identifier [] getLogger;13 argu...
Write the Nginx configuration file for this Site
0 module [1];1 function_definition [2,3,5];2 function_name [] validate;3 parameters [4];4 identifier [] self;5 block [6];6 for_statement [7,8,11];7 identifier [] client;8 attribute [9,10];9 identifier [] self;10 identifier [] clients;11 block [12,26];12 for_statement [13,14,15];13 identifier [] key;14 identifier [] REQ...
Check the value of the config attributes.
0 module [1];1 function_definition [2,3,8];2 function_name [] find_data;3 parameters [4,5];4 identifier [] path;5 default_parameter [6,7];6 identifier [] warn;7 True [];8 block [9,23,57];9 expression_statement [10];10 assignment [11,12];11 identifier [] full_path;12 call [13,18];13 attribute [14,17];14 attribute [15,16...
Return the absolute path to a data file within the data directory.
0 module [1];1 function_definition [2,3,14];2 function_name [] clone;3 parameters [4,5,8,11];4 identifier [] self;5 default_parameter [6,7];6 identifier [] date;7 None [];8 default_parameter [9,10];9 identifier [] data;10 None [];11 default_parameter [12,13];12 identifier [] name;13 None [];14 block [15,23,36,45,53,83]...
Create a clone of timeseries
0 module [1];1 function_definition [2,3,12];2 function_name [] eval;3 parameters [4,5,6,9];4 identifier [] self;5 identifier [] script;6 default_parameter [7,8];7 identifier [] keys;8 list [] [];9 default_parameter [10,11];10 identifier [] args;11 list [] [];12 block [13];13 return_statement [14];14 call [15,18];15 att...
Execute a Lua script server side.
0 module [1];1 function_definition [2,3,6];2 function_name [] connect;3 parameters [4,5];4 identifier [] self;5 identifier [] connection;6 block [7,22,28,35];7 if_statement [8,11];8 attribute [9,10];9 identifier [] self;10 identifier [] _user_connected;11 block [12,21];12 expression_statement [13];13 call [14,19];14 at...
Connects to the specified given connection using the given auth key.
0 module [1];1 function_definition [2,3,6];2 function_name [] do_metric_create_raw;3 parameters [4,5];4 identifier [] mc;5 identifier [] args;6 block [7];7 try_statement [8,21,48];8 block [9];9 expression_statement [10];10 call [11,16];11 attribute [12,15];12 attribute [13,14];13 identifier [] mc;14 identifier [] metri...
Create metric from raw json body.
0 module [1];1 function_definition [2,3,7];2 function_name [] send_unsubscribe;3 parameters [4,5,6];4 identifier [] self;5 identifier [] dup;6 identifier [] topics;7 block [8,14,32,50,56,64,73,81,88,99];8 expression_statement [9];9 assignment [10,11];10 identifier [] pkt;11 call [12,13];12 identifier [] MqttPkt;13 argu...
Send unsubscribe COMMAND to server.
0 module [1];1 function_definition [2,3,5,7];2 function_name [] run;3 parameters [4];4 identifier [] self;5 type [6];6 None [];7 block [8];8 while_statement [9,13];9 not_operator [10];10 attribute [11,12];11 identifier [] self;12 identifier [] cleanup;13 block [14,38,46];14 try_statement [15,32];15 block [16];16 expres...
processes entries in the queue until told to stop
0 module [1];1 function_definition [2,3,26];2 function_name [] run_track;3 parameters [4,5,8,11,14,17,20,23];4 identifier [] track;5 default_parameter [6,7];6 identifier [] result_hosts;7 None [];8 default_parameter [9,10];9 identifier [] crate_root;10 None [];11 default_parameter [12,13];12 identifier [] output_fmt;13...
Execute a track file
0 module [1];1 function_definition [2,3,8];2 function_name [] restart;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] all;7 False [];8 block [9,32,59];9 if_statement [10,11,21];10 identifier [] all;11 block [12];12 expression_statement [13];13 assignment [14,15];14 identifier [] data;1...
Restarts the given process.
0 module [1];1 function_definition [2,3,7];2 function_name [] set;3 parameters [4,5,6];4 identifier [] self;5 identifier [] option;6 identifier [] value;7 block [8,21];8 if_statement [9,14];9 comparison_operator [10,13] is;10 attribute [11,12];11 identifier [] self;12 identifier [] config;13 None [];14 block [15];15 ex...
Sets an option to a value.
0 module [1];1 function_definition [2,3,6];2 function_name [] remove_group;3 parameters [4,5];4 identifier [] self;5 identifier [] group;6 block [7,20,32,41,59,68,86,97];7 if_statement [8,14];8 not_operator [9];9 call [10,11];10 identifier [] isinstance;11 argument_list [12,13];12 identifier [] group;13 identifier [] G...
Remove the specified group.
0 module [1];1 function_definition [2,3,8];2 function_name [] _custom_icon;3 parameters [4,5,6];4 identifier [] self;5 identifier [] name;6 dictionary_splat_pattern [7];7 identifier [] kwargs;8 block [9,18];9 expression_statement [10];10 assignment [11,12];11 identifier [] options;12 call [13,14];13 identifier [] dict;...
Return the custom icon corresponding to the given name.
0 module [1];1 function_definition [2,3,6];2 function_name [] error;3 parameters [4,5];4 identifier [] self;5 identifier [] msg;6 block [7,13];7 expression_statement [8];8 assignment [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] _error;12 True [];13 expression_statement [14];14 call [15,20];15 attri...
Callback run when a recoverable parsing error occurs
0 module [1];1 function_definition [2,3,10];2 function_name [] fmt_cell;3 parameters [4,5,6,7,8];4 identifier [] self;5 identifier [] value;6 identifier [] width;7 identifier [] cell_formating;8 dictionary_splat_pattern [9];9 identifier [] text_formating;10 block [11,31,42];11 expression_statement [12];12 assignment [1...
Format sigle table cell.
0 module [1];1 function_definition [2,3,6];2 function_name [] _handle_template;3 parameters [4,5];4 identifier [] self;5 identifier [] token;6 block [7,11,15,21,124];7 expression_statement [8];8 assignment [9,10];9 identifier [] params;10 list [] [];11 expression_statement [12];12 assignment [13,14];13 identifier [] de...
Handle a case where a template is at the head of the tokens.
0 module [1];1 function_definition [2,3,5];2 function_name [] htmlize_list;3 parameters [4];4 identifier [] items;5 block [6,11,29,36];6 expression_statement [7];7 assignment [8,9];8 identifier [] out;9 list [10] ["<ul>"];10 string [] <ul>;11 for_statement [12,13,14];12 identifier [] item;13 identifier [] items;14 bloc...
Turn a python list into an html list.
0 module [1];1 function_definition [2,3,6];2 function_name [] _dequantize;3 parameters [4,5];4 identifier [] q;5 identifier [] params;6 block [7,15];7 if_statement [8,12];8 not_operator [9];9 attribute [10,11];10 identifier [] params;11 identifier [] quantize;12 block [13];13 return_statement [14];14 identifier [] q;15...
Dequantize q according to params.
0 module [1];1 function_definition [2,3,7];2 function_name [] create_with_virtualenv;3 parameters [4,5,6];4 identifier [] self;5 identifier [] interpreter;6 identifier [] virtualenv_options;7 block [8,18,25,39];8 expression_statement [9];9 assignment [10,11];10 identifier [] args;11 list [12,13,14,15] ['virtualenv', '-...
Create a virtualenv using the virtualenv lib.
0 module [1];1 function_definition [2,3,5];2 function_name [] cyan;3 parameters [4];4 identifier [] cls;5 block [6,8,16,23,29];6 expression_statement [7];7 string [] Make the text foreground color cyan.;8 expression_statement [9];9 assignment [10,11];10 identifier [] wAttributes;11 call [12,15];12 attribute [13,14];13 ...
Make the text foreground color cyan.
0 module [1];1 function_definition [2,3,5];2 function_name [] restore_initial_state;3 parameters [4];4 identifier [] self;5 block [6,14,20,26];6 expression_statement [7];7 call [8,13];8 attribute [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] list;12 identifier [] clear;13 argument_list [];14 express...
Restores initial cursors and initial active editor.
0 module [1];1 function_definition [2,3,6];2 function_name [] _stop_process;3 parameters [4,5];4 identifier [] p;5 identifier [] name;6 block [7,27,33,40,60,66];7 if_statement [8,15];8 comparison_operator [9,14] is not;9 call [10,13];10 attribute [11,12];11 identifier [] p;12 identifier [] poll;13 argument_list [];14 N...
Stop process, by applying terminate and kill.
0 module [1];1 function_definition [2,3,9];2 function_name [] render;3 parameters [4,5,6];4 identifier [] self;5 identifier [] view;6 default_parameter [7,8];7 identifier [] context;8 None [];9 block [10];10 return_statement [11];11 call [12,17];12 attribute [13,16];13 attribute [14,15];14 identifier [] self;15 identif...
Render `view` with this block's runtime and the supplied `context`
0 module [1];1 function_definition [2,3,5];2 function_name [] _has_bcftools_germline_stats;3 parameters [4];4 identifier [] data;5 block [6,18,37,45];6 expression_statement [7];7 assignment [8,9];8 identifier [] stats_file;9 call [10,13];10 attribute [11,12];11 identifier [] tz;12 identifier [] get_in;13 argument_list ...
Check for the presence of a germline stats file, CWL compatible.
0 module [1];1 function_definition [2,3,6];2 function_name [] delete;3 parameters [4,5];4 identifier [] self;5 identifier [] key;6 block [7,12];7 expression_statement [8];8 call [9,10];9 identifier [] validate_is_bytes;10 argument_list [11];11 identifier [] key;12 expression_statement [13];13 assignment [14,17];14 attr...
Equals to setting the value to None
0 module [1];1 function_definition [2,3,8];2 function_name [] map;3 parameters [4,5,6];4 identifier [] self;5 identifier [] fn;6 list_splat_pattern [7];7 identifier [] seq;8 block [9,11,13,19,27,47,51,75];9 expression_statement [10];10 string [] Perform a map operation distributed among the workers. Will;11 expression_...
Perform a map operation distributed among the workers. Will
0 module [1];1 function_definition [2,3,5];2 function_name [] _processDDL;3 parameters [4];4 identifier [] self;5 block [6,14,21];6 expression_statement [7];7 assignment [8,9];8 identifier [] sql_statements;9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] _generateDDL;13 argument_list [];14 ex...
Generate and process table SQL, SQLLite version
0 module [1];1 function_definition [2,3,7];2 function_name [] relevant_rules_for_match;3 parameters [4,5,6];4 identifier [] self;5 identifier [] action;6 identifier [] subject;7 block [8,12,47];8 expression_statement [9];9 assignment [10,11];10 identifier [] matches;11 list [] [];12 for_statement [13,14,17];13 identifi...
retrive match action and subject
0 module [1];1 function_definition [2,3,30,32];2 function_name [] _calculate_dispersion;3 parameters [4,18,24];4 typed_parameter [5,6];5 identifier [] X;6 type [7];7 generic_type [8,9];8 identifier [] Union;9 type_parameter [10,14];10 type [11];11 attribute [12,13];12 identifier [] pd;13 identifier [] DataFrame;14 type...
Calculate the dispersion between actual points and their assigned centroids
0 module [1];1 function_definition [2,3,6];2 function_name [] charge;3 parameters [4,5];4 identifier [] self;5 identifier [] data;6 block [7,21,36];7 expression_statement [8];8 assignment [9,10];9 identifier [] token;10 call [11,14];11 attribute [12,13];12 identifier [] data;13 identifier [] get;14 argument_list [15,16...
Second stage of an OPR request
0 module [1];1 function_definition [2,3,5];2 function_name [] getDefaultParList;3 parameters [4];4 identifier [] self;5 block [6,35,55];6 if_statement [7,12];7 comparison_operator [8,11] is;8 attribute [9,10];9 identifier [] self;10 identifier [] filename;11 None [];12 block [13,26];13 expression_statement [14];14 assi...
Return a par list just like ours, but with all default values.
0 module [1];1 function_definition [2,3,6];2 function_name [] between_or_equal_to;3 parameters [4,5];4 identifier [] y;5 identifier [] z;6 block [7];7 return_statement [8];8 call [9,10];9 identifier [] _combinable;10 argument_list [11];11 lambda [12,14];12 lambda_parameters [13];13 identifier [] x;14 boolean_operator [...
Greater than or equal to y and less than or equal to z.
0 module [1];1 function_definition [2,3,8];2 function_name [] load_config;3 parameters [4,5];4 identifier [] args;5 default_parameter [6,7];6 identifier [] config_path;7 string [] .inlineplz.yml;8 block [9,13,73,81,114,121,159];9 expression_statement [10];10 assignment [11,12];11 identifier [] config;12 dictionary [];1...
Load inline-plz config from yaml config file with reasonable defaults.
0 module [1];1 function_definition [2,3,20];2 function_name [] process_save;3 parameters [4,5,6,7,8,11,14,17];4 identifier [] X;5 identifier [] y;6 identifier [] tokenizer;7 identifier [] proc_data_path;8 default_parameter [9,10];9 identifier [] max_len;10 integer [] 400;11 default_parameter [12,13];12 identifier [] tr...
Process text and save as Dataset
0 module [1];1 function_definition [2,3,9];2 function_name [] construct_mapping;3 parameters [4,5,6];4 identifier [] self;5 identifier [] node;6 default_parameter [7,8];7 identifier [] deep;8 False [];9 block [10,16,54];10 expression_statement [11];11 assignment [12,13];12 identifier [] mapping;13 call [14,15];14 ident...
Use ODict for maps
0 module [1];1 function_definition [2,3,7];2 function_name [] newDocPI;3 parameters [4,5,6];4 identifier [] self;5 identifier [] name;6 identifier [] content;7 block [8,21,31,40];8 expression_statement [9];9 assignment [10,11];10 identifier [] ret;11 call [12,15];12 attribute [13,14];13 identifier [] libxml2mod;14 iden...
Creation of a processing instruction element.
0 module [1];1 function_definition [2,3,8];2 function_name [] batch;3 parameters [4,5];4 identifier [] input_iter;5 default_parameter [6,7];6 identifier [] batch_size;7 integer [] 32;8 block [9,16,29];9 expression_statement [10];10 assignment [11,12];11 identifier [] input_iter;12 call [13,14];13 identifier [] iter;14 ...
Batches data from an iterator that returns single items at a time.
0 module [1];1 function_definition [2,3,5];2 function_name [] __set_log_file_name;3 parameters [4];4 identifier [] self;5 block [6,21,44,58,62,118];6 expression_statement [7];7 assignment [8,11];8 pattern_list [9,10];9 identifier [] dir;10 identifier [] _;11 call [12,17];12 attribute [13,16];13 attribute [14,15];14 ide...
Automatically set logFileName attribute
0 module [1];1 function_definition [2,3,7];2 function_name [] sorted;3 parameters [4,5,6];4 identifier [] cls;5 identifier [] items;6 identifier [] orders;7 block [8];8 return_statement [9];9 call [10,11];10 identifier [] sorted;11 argument_list [12,13];12 identifier [] items;13 keyword_argument [14,15];14 identifier [...
Returns the elements in `items` sorted according to `orders`
0 module [1];1 function_definition [2,3,5];2 function_name [] from_memdb_file;3 parameters [4];4 identifier [] path;5 block [6,13];6 expression_statement [7];7 assignment [8,9];8 identifier [] path;9 call [10,11];10 identifier [] to_bytes;11 argument_list [12];12 identifier [] path;13 return_statement [14];14 call [15,...
Creates a sourcemap view from MemDB at a given file.
0 module [1];1 function_definition [2,3,5];2 function_name [] _check_realign;3 parameters [4];4 identifier [] data;5 block [6];6 if_statement [7,30];7 boolean_operator [8,19] and;8 comparison_operator [9,10] not in;9 string [] gatk4;10 call [11,16];11 attribute [12,15];12 subscript [13,14];13 identifier [] data;14 stri...
Check for realignment, which is not supported in GATK4
0 module [1];1 function_definition [2,3,13,15];2 function_name [] _create_entry;3 parameters [4,8];4 typed_parameter [5,6];5 identifier [] entry;6 type [7];7 identifier [] dict;8 typed_default_parameter [9,10,12];9 identifier [] source;10 type [11];11 identifier [] Source;12 None [];13 type [14];14 identifier [] dict;1...
Filter and normalize the output of pipdeptree entry.