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0 module [1];1 function_definition [2,3,5];2 function_name [] _init;3 parameters [4];4 identifier [] self;5 block [6];6 expression_statement [7];7 assignment [8,11];8 attribute [9,10];9 identifier [] self;10 identifier [] _line_number;11 call [12,13];12 identifier [] next_line;13 argument_list [14,19];14 attribute [15,...
Read the line number.
0 module [1];1 function_definition [2,3,5];2 function_name [] list;3 parameters [4];4 identifier [] ctx;5 block [6,13];6 expression_statement [7];7 call [8,11];8 attribute [9,10];9 identifier [] log;10 identifier [] debug;11 argument_list [12];12 string [] chemdataextractor.config.list;13 for_statement [14,15,16];14 id...
List all config values.
0 module [1];1 function_definition [2,3,5];2 function_name [] equalize_terminal_double_bond;3 parameters [4];4 identifier [] mol;5 block [6];6 for_statement [7,10,15];7 pattern_list [8,9];8 identifier [] i;9 identifier [] a;10 call [11,14];11 attribute [12,13];12 identifier [] mol;13 identifier [] atoms_iter;14 argumen...
Show equalized double bond if it is connected to terminal atom.
0 module [1];1 function_definition [2,3,11,13];2 function_name [] visit_Bytes;3 parameters [4,5];4 identifier [] self;5 typed_parameter [6,7];6 identifier [] node;7 type [8];8 attribute [9,10];9 identifier [] ast;10 identifier [] Bytes;11 type [12];12 identifier [] bytes;13 block [14,20,28];14 expression_statement [15]...
Recompute the value as the bytes at the node.
0 module [1];1 function_definition [2,3,6];2 function_name [] process_message;3 parameters [4,5];4 identifier [] message;5 identifier [] notification;6 block [7,31,44,57];7 if_statement [8,18];8 not_operator [9];9 comparison_operator [10,14] <=;10 call [11,12];11 identifier [] set;12 argument_list [13];13 identifier []...
Function to process a JSON message delivered from Amazon
0 module [1];1 function_definition [2,3,9,11];2 function_name [] wipe_table;3 parameters [4,5];4 identifier [] self;5 typed_parameter [6,7];6 identifier [] table;7 type [8];8 identifier [] str;9 type [10];10 identifier [] int;11 block [12,23];12 expression_statement [13];13 assignment [14,15];14 identifier [] sql;15 bi...
Delete all records from a table. Use caution!
0 module [1];1 function_definition [2,3,6];2 function_name [] getall;3 parameters [4,5];4 identifier [] self;5 identifier [] table;6 block [7,30,51];7 try_statement [8,15];8 block [9];9 expression_statement [10];10 call [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] _check_db;14 argument_list [];15...
Get all rows values for a table
0 module [1];1 function_definition [2,3,6];2 function_name [] build_day;3 parameters [4,5];4 identifier [] self;5 identifier [] dt;6 block [7,18,29,40,58,73,81];7 expression_statement [8];8 assignment [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] month;12 call [13,14];13 identifier [] str;14 argumen...
Build the page for the provided day.
0 module [1];1 function_definition [2,3,9];2 function_name [] run_add_system;3 parameters [4,5,6,7,8];4 identifier [] name;5 identifier [] token;6 identifier [] org;7 identifier [] system;8 identifier [] prompt;9 block [10,25];10 expression_statement [11];11 assignment [12,13];12 identifier [] repo;13 call [14,15];14 i...
Adds a new system to the repo.
0 module [1];1 function_definition [2,3,6];2 function_name [] R_isrk;3 parameters [4,5];4 identifier [] self;5 identifier [] k;6 block [7,21,33,166];7 expression_statement [8];8 assignment [9,10];9 identifier [] ind;10 call [11,12];11 identifier [] int;12 argument_list [13];13 subscript [14,17,20];14 attribute [15,16];...
Function returns the inverse square root of R matrix on step k.
0 module [1];1 function_definition [2,3,5];2 function_name [] getfields;3 parameters [4];4 identifier [] comm;5 block [6,10,26];6 expression_statement [7];7 assignment [8,9];8 identifier [] fields;9 list [] [];10 for_statement [11,12,13];11 identifier [] field;12 identifier [] comm;13 block [14];14 if_statement [15,18]...
get all the fields that have the key 'field'
0 module [1];1 function_definition [2,3,6];2 function_name [] _no_ntplt;3 parameters [4,5];4 identifier [] self;5 identifier [] ntplt;6 block [7];7 expression_statement [8];8 call [9,14];9 attribute [10,13];10 attribute [11,12];11 identifier [] sys;12 identifier [] stdout;13 identifier [] write;14 argument_list [15];15...
Print a message about the GO DAG Plot we are NOT plotting.
0 module [1];1 function_definition [2,3,8];2 function_name [] hash160;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] is_compressed;7 None [];8 block [9,22,52,75];9 if_statement [10,13];10 comparison_operator [11,12] is;11 identifier [] is_compressed;12 None [];13 block [14];14 express...
Return the hash160 representation of this key, if available.
0 module [1];1 function_definition [2,3,6];2 function_name [] transloadsForPeer;3 parameters [4,5];4 identifier [] self;5 identifier [] peer;6 block [7];7 for_statement [8,9,16];8 identifier [] tl;9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] transloads;14 identifier []...
Returns an iterator of transloads that apply to a particular peer.
0 module [1];1 function_definition [2,3,5];2 function_name [] transmit_tc_bpdu;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,11];7 not_operator [8];8 attribute [9,10];9 identifier [] self;10 identifier [] send_tc_flg;11 block [12,33,47];12 expression_statement [13];13 assignment [14,15];14 identif...
Set send_tc_flg to send Topology Change BPDU.
0 module [1];1 function_definition [2,3,5];2 function_name [] distances;3 parameters [4];4 identifier [] self;5 block [6,12,29,51,56];6 import_from_statement [7,10];7 dotted_name [8,9];8 identifier [] molmod;9 identifier [] ext;10 dotted_name [11];11 identifier [] graphs_floyd_warshall;12 expression_statement [13];13 a...
The matrix with the all-pairs shortest path lenghts
0 module [1];1 function_definition [2,3,5];2 function_name [] load_cfg;3 parameters [4];4 identifier [] self;5 block [6];6 if_statement [7,12,33];7 comparison_operator [8,11] ==;8 attribute [9,10];9 identifier [] self;10 identifier [] cfg_mode;11 string [] json;12 block [13];13 with_statement [14,25];14 with_clause [15...
loads our config object accessible via self.cfg
0 module [1];1 function_definition [2,3,6];2 function_name [] refactor_ifs;3 parameters [4,5];4 identifier [] stmnt;5 identifier [] ifs;6 block [7,72];7 if_statement [8,15];8 call [9,10];9 identifier [] isinstance;10 argument_list [11,12];11 identifier [] stmnt;12 attribute [13,14];13 identifier [] _ast;14 identifier [...
for if statements in list comprehension
0 module [1];1 function_definition [2,3,14];2 function_name [] _linear_seaborn_;3 parameters [4,5,8,11];4 identifier [] self;5 default_parameter [6,7];6 identifier [] label;7 None [];8 default_parameter [9,10];9 identifier [] style;10 None [];11 default_parameter [12,13];12 identifier [] opts;13 None [];14 block [15,26...
Returns a Seaborn linear regression plot
0 module [1];1 function_definition [2,3,6];2 function_name [] _parse_feature_names;3 parameters [4,5];4 identifier [] feature_names;5 identifier [] new_names;6 block [7,21,35,52];7 if_statement [8,13];8 call [9,10];9 identifier [] isinstance;10 argument_list [11,12];11 identifier [] feature_names;12 identifier [] set;1...
Helping function of `_parse_features` that parses a collection of feature names.
0 module [1];1 function_definition [2,3,5];2 function_name [] _reset;3 parameters [4];4 identifier [] self;5 block [6];6 with_statement [7,12];7 with_clause [8];8 with_item [9];9 attribute [10,11];10 identifier [] self;11 identifier [] _lock;12 block [13,19,25];13 expression_statement [14];14 call [15,18];15 attribute ...
Called when the filter has been changed
0 module [1];1 function_definition [2,3,6];2 function_name [] run;3 parameters [4,5];4 identifier [] self;5 identifier [] args;6 block [7,14,18,22,157];7 expression_statement [8];8 assignment [9,10];9 identifier [] args;10 call [11,12];11 identifier [] vars;12 argument_list [13];13 identifier [] args;14 expression_stat...
Convert the unordered args into function arguments.
0 module [1];1 function_definition [2,3,13,15];2 function_name [] clip_grad;3 parameters [4,8];4 typed_parameter [5,6];5 identifier [] learn;6 type [7];7 identifier [] Learner;8 typed_default_parameter [9,10,12];9 identifier [] clip;10 type [11];11 identifier [] float;12 float [] 0.1;13 type [14];14 identifier [] Learn...
Add gradient clipping of `clip` during training.
0 module [1];1 function_definition [2,3,32];2 function_name [] unlock;3 parameters [4,5,8,11,14,17,20,23,26,29];4 identifier [] name;5 default_parameter [6,7];6 identifier [] zk_hosts;7 None [];8 default_parameter [9,10];9 identifier [] identifier;10 None [];11 default_parameter [12,13];12 identifier [] max_concurrency...
Remove lease from semaphore.
0 module [1];1 function_definition [2,3,5];2 function_name [] _init_socket;3 parameters [4];4 identifier [] self;5 block [6,52,66,78,90];6 if_statement [7,10];7 attribute [8,9];8 identifier [] self;9 identifier [] ddpsocket;10 block [11,20,29,38,46];11 expression_statement [12];12 call [13,18];13 attribute [14,17];14 a...
Initialize the ddp socket
0 module [1];1 function_definition [2,3,9,11];2 function_name [] check_extension;3 parameters [4,5];4 identifier [] conn;5 typed_parameter [6,7];6 identifier [] extension;7 type [8];8 identifier [] str;9 type [10];10 identifier [] bool;11 block [12,16,45];12 expression_statement [13];13 assignment [14,15];14 identifier...
Check to see if an extension is installed.
0 module [1];1 function_definition [2,3,5];2 function_name [] close;3 parameters [4];4 identifier [] self;5 block [6,14,20,28,33,68];6 expression_statement [7];7 call [8,13];8 attribute [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] _input;12 identifier [] close;13 argument_list [];14 expression_stat...
Parse all remaining data and return the root message object.
0 module [1];1 function_definition [2,3,5];2 function_name [] cli;3 parameters [4];4 identifier [] env;5 block [6,17,30,36,44,52,60,68,107];6 expression_statement [7];7 assignment [8,9];8 identifier [] mgr;9 call [10,13];10 attribute [11,12];11 identifier [] SoftLayer;12 identifier [] LoadBalancerManager;13 argument_li...
Get price options to create a load balancer with.
0 module [1];1 function_definition [2,3,9,11];2 function_name [] relabel;3 parameters [4,5];4 identifier [] self;5 typed_parameter [6,7];6 identifier [] qubits;7 type [8];8 identifier [] Qubits;9 type [10];10 string [] Gate;11 block [12,19,32];12 expression_statement [13];13 assignment [14,15];14 identifier [] gate;15 ...
Return a copy of this Gate with new qubits
0 module [1];1 function_definition [2,3,12];2 function_name [] setData;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] index;6 identifier [] value;7 default_parameter [8,9];8 identifier [] role;9 attribute [10,11];10 identifier [] Qt;11 identifier [] EditRole;12 block [13,22,28,34,93];13 expression_statemen...
Set the data for the item at the given index to the given value.
0 module [1];1 function_definition [2,3,5];2 function_name [] wiki;3 parameters [4];4 identifier [] searchterm;5 block [6,13,17,26,39,47,61,67,83,92,110,124,137,145];6 expression_statement [7];7 assignment [8,9];8 identifier [] searchterm;9 call [10,11];10 identifier [] quote;11 argument_list [12];12 identifier [] sear...
return the top wiki search result for the term
0 module [1];1 function_definition [2,3,6];2 function_name [] __inner_predict;3 parameters [4,5];4 identifier [] self;5 identifier [] data_idx;6 block [7,19,85,179];7 if_statement [8,13];8 comparison_operator [9,10] >=;9 identifier [] data_idx;10 attribute [11,12];11 identifier [] self;12 identifier [] __num_dataset;13...
Predict for training and validation dataset.
0 module [1];1 function_definition [2,3,6];2 function_name [] view_required_params_per_trt;3 parameters [4,5];4 identifier [] token;5 identifier [] dstore;6 block [7,13,17,106];7 expression_statement [8];8 assignment [9,10];9 identifier [] csm_info;10 subscript [11,12];11 identifier [] dstore;12 string [] csm_info;13 e...
Display the parameters needed by each tectonic region type
0 module [1];1 function_definition [2,3,30];2 function_name [] _run;3 parameters [4,5,6,9,12,15,18,21,24,27];4 identifier [] name;5 identifier [] cmd;6 default_parameter [7,8];7 identifier [] exec_driver;8 None [];9 default_parameter [10,11];10 identifier [] output;11 None [];12 default_parameter [13,14];13 identifier ...
Common logic for docker.run functions
0 module [1];1 function_definition [2,3,5];2 function_name [] str2float;3 parameters [4];4 identifier [] text;5 block [6];6 try_statement [7,20,51];7 block [8];8 return_statement [9];9 call [10,11];10 identifier [] float;11 argument_list [12];12 call [13,16];13 attribute [14,15];14 identifier [] re;15 identifier [] sub...
Remove uncertainty brackets from strings and return the float.
0 module [1];1 function_definition [2,3,5];2 function_name [] _convert_label;3 parameters [4];4 identifier [] label;5 block [6,24];6 expression_statement [7];7 assignment [8,9];8 identifier [] style;9 call [10,11];10 identifier [] qt_font_to_style;11 argument_list [12,18];12 call [13,16];13 attribute [14,15];14 identif...
Convert a label from 1.X to the new format
0 module [1];1 function_definition [2,3,6];2 function_name [] _renameClasses;3 parameters [4,5];4 identifier [] classes;5 identifier [] prefix;6 block [7,11,88];7 expression_statement [8];8 assignment [9,10];9 identifier [] renameMap;10 dictionary [];11 for_statement [12,15,20];12 pattern_list [13,14];13 identifier [] ...
Replace class IDs with nice strings.
0 module [1];1 function_definition [2,3,5];2 function_name [] graceful_ctrlc;3 parameters [4];4 identifier [] func;5 block [6,38];6 decorated_definition [7,12];7 decorator [8];8 call [9,10];9 identifier [] wraps;10 argument_list [11];11 identifier [] func;12 function_definition [13,14,19];13 function_name [] wrapper;14...
Makes the decorated function exit with code 1 on CTRL+C.
0 module [1];1 function_definition [2,3,6];2 function_name [] from_fqdn;3 parameters [4,5];4 identifier [] cls;5 identifier [] fqdn;6 block [7,19];7 expression_statement [8];8 assignment [9,10];9 identifier [] result;10 call [11,14];11 attribute [12,13];12 identifier [] cls;13 identifier [] list;14 argument_list [15];1...
Retrieve domain id associated to a FQDN.
0 module [1];1 function_definition [2,3,9];2 function_name [] async_get_measurements;3 parameters [4,5,6];4 identifier [] self;5 identifier [] uid;6 default_parameter [7,8];7 identifier [] fields;8 string [] *;9 block [10];10 return_statement [11];11 subscript [12,28];12 () [13];13 yield [14];14 call [15,18];15 attribu...
Get measurements of a device.
0 module [1];1 function_definition [2,3,8];2 function_name [] _read_mz;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] mz_offset;6 identifier [] mz_len;7 identifier [] mz_enc_len;8 block [9,18,29,39,50];9 expression_statement [10];10 call [11,16];11 attribute [12,15];12 attribute [13,14];13 identifier [] se...
reads a mz array from the currently open ibd file
0 module [1];1 function_definition [2,3,6];2 function_name [] list_ebs;3 parameters [4,5];4 identifier [] region;5 identifier [] filter_by_kwargs;6 block [7,18,26];7 expression_statement [8];8 assignment [9,10];9 identifier [] conn;10 call [11,16];11 attribute [12,15];12 attribute [13,14];13 identifier [] boto;14 ident...
List running ebs volumes.
0 module [1];1 function_definition [2,3,12];2 function_name [] _align_from_fastq;3 parameters [4,5,6,7,8,9,10,11];4 identifier [] fastq1;5 identifier [] fastq2;6 identifier [] aligner;7 identifier [] align_ref;8 identifier [] sam_ref;9 identifier [] names;10 identifier [] align_dir;11 identifier [] data;12 block [13,19...
Align from fastq inputs, producing sorted BAM output.
0 module [1];1 function_definition [2,3,9];2 function_name [] register_ddk_task;3 parameters [4,5,7];4 identifier [] self;5 list_splat_pattern [6];6 identifier [] args;7 dictionary_splat_pattern [8];8 identifier [] kwargs;9 block [10,16];10 expression_statement [11];11 assignment [12,15];12 subscript [13,14];13 identif...
Register a ddk task.
0 module [1];1 function_definition [2,3,7];2 function_name [] save_user_and_user_email;3 parameters [4,5,6];4 identifier [] self;5 identifier [] user;6 identifier [] user_email;7 block [8,22];8 if_statement [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] UserEmailClass;12 block [13];13 expression_stat...
Save the User and UserEmail object.
0 module [1];1 function_definition [2,3,8];2 function_name [] handle_rule_versions;3 parameters [4,5,6,7];4 identifier [] self;5 identifier [] filename;6 identifier [] rule_type;7 identifier [] rule;8 block [9];9 if_statement [10,13,64];10 comparison_operator [11,12] in;11 string [] versions;12 identifier [] rule;13 bl...
For each version of a rule found in the ruleset, append a new Rule object
0 module [1];1 function_definition [2,3,5];2 function_name [] wrap;3 parameters [4];4 identifier [] value;5 block [6];6 if_statement [7,18,21,33,45];7 boolean_operator [8,13] or;8 call [9,10];9 identifier [] isinstance;10 argument_list [11,12];11 identifier [] value;12 identifier [] Document;13 call [14,15];14 identifi...
Wraps the given value in a Document or DocumentList as applicable.
0 module [1];1 function_definition [2,3,5];2 function_name [] parse_TKIP_hdr;3 parameters [4];4 identifier [] pkt;5 block [6,12,18,24,35,41,47,53,59,65,71,77,86,102,112];6 assert_statement [7];7 attribute [8,11];8 attribute [9,10];9 identifier [] pkt;10 identifier [] FCfield;11 identifier [] protected;12 expression_sta...
Extract TSCs, TA and encoded-data from a packet @pkt
0 module [1];1 function_definition [2,3,8];2 function_name [] guess_input_handler;3 parameters [4,5];4 identifier [] seqs;5 default_parameter [6,7];6 identifier [] add_seq_names;7 False [];8 block [9,27,49,54];9 if_statement [10,15];10 call [11,12];11 identifier [] isinstance;12 argument_list [13,14];13 identifier [] s...
Returns the name of the input handler for seqs.
0 module [1];1 function_definition [2,3,5];2 function_name [] _select_default_algorithm;3 parameters [4];4 identifier [] analysis;5 block [6];6 if_statement [7,13,39,81];7 boolean_operator [8,10] or;8 not_operator [9];9 identifier [] analysis;10 comparison_operator [11,12] ==;11 identifier [] analysis;12 string [] Stan...
Provide default algorithm sections from templates or standard
0 module [1];1 function_definition [2,3,5];2 function_name [] spatial_slice_zeros;3 parameters [4];4 identifier [] x;5 block [6];6 return_statement [7];7 call [8,11];8 attribute [9,10];9 identifier [] tf;10 identifier [] cast;11 argument_list [12,28];12 call [13,16];13 attribute [14,15];14 identifier [] tf;15 identifie...
Experimental summary that shows how many planes are unused for a batch.
0 module [1];1 function_definition [2,3,5];2 function_name [] _spawn;3 parameters [4];4 identifier [] self;5 block [6,21];6 expression_statement [7];7 assignment [8,11];8 attribute [9,10];9 identifier [] self;10 identifier [] queue;11 call [12,13];12 identifier [] Queue;13 argument_list [14];14 keyword_argument [15,16]...
Initialize the queue and the threads.
0 module [1];1 function_definition [2,3,7];2 function_name [] del_node;3 parameters [4,5,6];4 identifier [] self;5 identifier [] char;6 identifier [] node;7 block [8,20,45,78,119];8 delete_statement [9];9 subscript [10,19];10 attribute [11,18];11 subscript [12,17];12 attribute [13,16];13 attribute [14,15];14 identifier...
Remove a node from a character.
0 module [1];1 function_definition [2,3,7];2 function_name [] adapt_sum;3 parameters [4,5,6];4 identifier [] line;5 identifier [] cfg;6 identifier [] filter_obj;7 block [8,17,28,40];8 expression_statement [9];9 assignment [10,11];10 identifier [] lines;11 call [12,15];12 attribute [13,14];13 identifier [] filter_obj;14...
Determine best filter by sum of all row values
0 module [1];1 function_definition [2,3,5];2 function_name [] pupatizeElements;3 parameters [4];4 identifier [] self;5 block [6];6 for_statement [7,8,15];7 identifier [] i;8 call [9,10];9 identifier [] range;10 argument_list [11];11 call [12,13];12 identifier [] len;13 argument_list [14];14 identifier [] self;15 block ...
Transform all raba object into pupas
0 module [1];1 function_definition [2,3,5];2 function_name [] clear_last_check;3 parameters [4];4 identifier [] self;5 block [6,33];6 with_statement [7,16];7 with_clause [8];8 with_item [9];9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] db;13 identifier [] session;14 identifier [] begin_neste...
Clear the checksum of the file.
0 module [1];1 function_definition [2,3,7];2 function_name [] extract;3 parameters [4,5,6];4 identifier [] json_object;5 identifier [] args;6 identifier [] csv_writer;7 block [8,13,97,108];8 expression_statement [9];9 assignment [10,11];10 identifier [] found;11 list [12] [[]];12 list [] [];13 for_statement [14,15,18];...
Extract and write found attributes.
0 module [1];1 function_definition [2,3,5];2 function_name [] _CheckCollation;3 parameters [4];4 identifier [] cursor;5 block [6,14,28,36];6 expression_statement [7];7 assignment [8,9];8 identifier [] cur_collation_connection;9 call [10,11];10 identifier [] _ReadVariable;11 argument_list [12,13];12 string [] collation_...
Checks MySQL collation and warns if misconfigured.
0 module [1];1 function_definition [2,3,6];2 function_name [] _text_attr;3 parameters [4,5];4 identifier [] self;5 identifier [] attr;6 block [7,13];7 expression_statement [8];8 assignment [9,10];9 identifier [] attr;10 subscript [11,12];11 identifier [] text;12 identifier [] attr;13 if_statement [14,17,26,42,58,74];14...
Given a text attribute, set the current cursor appropriately.
0 module [1];1 function_definition [2,3,7];2 function_name [] _get;3 parameters [4,5,6];4 identifier [] self;5 identifier [] operation;6 identifier [] field;7 block [8,14,37];8 expression_statement [9];9 call [10,13];10 attribute [11,12];11 identifier [] self;12 identifier [] _check_exists;13 argument_list [];14 expres...
Get tracked position for a given operation and field.
0 module [1];1 function_definition [2,3,14];2 function_name [] _send_method;3 parameters [4,5,6,11];4 identifier [] self;5 identifier [] method_sig;6 default_parameter [7,8];7 identifier [] args;8 call [9,10];9 identifier [] bytes;10 argument_list [];11 default_parameter [12,13];12 identifier [] content;13 None [];14 b...
Send a method for our channel.
0 module [1];1 function_definition [2,3,8];2 function_name [] cleanup;3 parameters [4,5,6,7];4 identifier [] test_data;5 identifier [] udfs;6 identifier [] tmp_data;7 identifier [] tmp_db;8 block [9,16,38,64,78];9 expression_statement [10];10 assignment [11,12];11 identifier [] con;12 call [13,14];13 identifier [] make...
Cleanup Ibis test data and UDFs
0 module [1];1 function_definition [2,3,5];2 function_name [] _is_somatic;3 parameters [4];4 identifier [] rec;5 block [6,14,22,33,48,59,82,99,115];6 if_statement [7,11];7 call [8,9];8 identifier [] _has_somatic_flag;9 argument_list [10];10 identifier [] rec;11 block [12];12 return_statement [13];13 True [];14 if_state...
Handle somatic classifications from MuTect, MuTect2, VarDict and VarScan
0 module [1];1 function_definition [2,3,6];2 function_name [] copyfile;3 parameters [4,5];4 identifier [] self;5 identifier [] target;6 block [7];7 expression_statement [8];8 call [9,12];9 attribute [10,11];10 identifier [] shutil;11 identifier [] copyfile;12 argument_list [13,16];13 attribute [14,15];14 identifier [] ...
Copies this file to the given `target` location.
0 module [1];1 function_definition [2,3,6];2 function_name [] serveUpcoming;3 parameters [4,5];4 identifier [] self;5 identifier [] request;6 block [7,16,24,44,53,71,82,91,101,145];7 expression_statement [8];8 assignment [9,10];9 identifier [] myurl;10 call [11,14];11 attribute [12,13];12 identifier [] self;13 identifi...
Upcoming events list view.
0 module [1];1 function_definition [2,3,5];2 function_name [] transmit_agnocomplete_context;3 parameters [4];4 identifier [] self;5 block [6,19,34];6 expression_statement [7];7 assignment [8,9];8 identifier [] user;9 call [10,18];10 attribute [11,16,17];11 call [12,13];12 identifier [] super;13 argument_list [14,15];14...
We'll reset the current queryset only if the user is set.
0 module [1];1 function_definition [2,3,7];2 function_name [] _add_timeout;3 parameters [4,5,6];4 identifier [] self;5 identifier [] request;6 identifier [] future;7 block [8,16,40];8 expression_statement [9];9 assignment [10,11];10 identifier [] io_loop;11 call [12,15];12 attribute [13,14];13 identifier [] IOLoop;14 i...
Adds a timeout for the given request to the given future.
0 module [1];1 function_definition [2,3,5];2 function_name [] to_base_variable;3 parameters [4];4 identifier [] self;5 block [6];6 return_statement [7];7 call [8,9];8 identifier [] Variable;9 argument_list [10,13,16,19,24];10 attribute [11,12];11 identifier [] self;12 identifier [] dims;13 attribute [14,15];14 identifi...
Return this variable as a base xarray.Variable
0 module [1];1 function_definition [2,3,5];2 function_name [] verify;3 parameters [4];4 identifier [] path;5 block [6,15,19,69];6 expression_statement [7];7 assignment [8,9];8 identifier [] path;9 call [10,13];10 attribute [11,12];11 identifier [] pathlib;12 identifier [] Path;13 argument_list [14];14 identifier [] pat...
Verify that `path` has a supported numpy file format
0 module [1];1 function_definition [2,3,5];2 function_name [] start;3 parameters [4];4 identifier [] st_reg_number;5 block [6,18,25,35,39,62,76,84];6 expression_statement [7];7 assignment [8,9];8 identifier [] weights;9 list [10,11,12,13,14,15,16,17] [9, 8, 7, 6, 5, 4, 3, 2];10 integer [] 9;11 integer [] 8;12 integer [...
Checks the number valiaty for the Paraiba state
0 module [1];1 function_definition [2,3,6];2 function_name [] app_state;3 parameters [4,5];4 identifier [] self;5 identifier [] app;6 block [7,20,31];7 if_statement [8,17];8 boolean_operator [9,13] or;9 not_operator [10];10 attribute [11,12];11 identifier [] self;12 identifier [] available;13 not_operator [14];14 attri...
Informs if application is running.
0 module [1];1 function_definition [2,3,4];2 function_name [] load_user_catalog;3 parameters [];4 block [5,11];5 expression_statement [6];6 assignment [7,8];7 identifier [] cat_dir;8 call [9,10];9 identifier [] user_data_dir;10 argument_list [];11 if_statement [12,21,26];12 not_operator [13];13 call [14,19];14 attribut...
Return a catalog for the platform-specific user Intake directory
0 module [1];1 function_definition [2,3,8];2 function_name [] acceptable;3 parameters [4,5];4 identifier [] value;5 default_parameter [6,7];6 identifier [] capitalize;7 False [];8 block [9,29,46,103];9 expression_statement [10];10 assignment [11,12];11 identifier [] name;12 call [13,18];13 attribute [14,17];14 subscrip...
Convert a string into something that can be used as a valid python variable name
0 module [1];1 function_definition [2,3,8];2 function_name [] round;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] digits;7 integer [] 0;8 block [9,21,33,45];9 expression_statement [10];10 assignment [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] _left;14 call [15...
Round the dimensions of the given rectangle to the given number of digits.
0 module [1];1 function_definition [2,3,9];2 function_name [] _build_session;3 parameters [4,5,6];4 identifier [] username;5 identifier [] password;6 default_parameter [7,8];7 identifier [] trans_label;8 None [];9 block [10,18,26,32,44,92];10 expression_statement [11];11 assignment [12,13];12 identifier [] bigip;13 cal...
Create a session to be used when connecting to iControl REST.
0 module [1];1 function_definition [2,3,7];2 function_name [] T;3 parameters [4,5,6];4 identifier [] self;5 identifier [] ID;6 identifier [] sign;7 block [8,18,26];8 expression_statement [9];9 assignment [10,11];10 identifier [] lon;11 subscript [12,17];12 subscript [13,16];13 attribute [14,15];14 identifier [] self;15...
Returns the term of an object in a sign.
0 module [1];1 function_definition [2,3,5];2 function_name [] to_json;3 parameters [4];4 identifier [] self;5 block [6,10,67,143];6 expression_statement [7];7 assignment [8,9];8 identifier [] res_dict;9 dictionary [];10 function_definition [11,12,17];11 function_name [] gen_dep_edge;12 parameters [13,14,15,16];13 ident...
Outputs the entire graph.
0 module [1];1 function_definition [2,3,5];2 function_name [] upgrade;3 parameters [4];4 identifier [] cfg;5 block [6,12,22,32];6 expression_statement [7];7 assignment [8,9];8 identifier [] db_node;9 subscript [10,11];10 identifier [] cfg;11 string [] db;12 expression_statement [13];13 assignment [14,15];14 identifier ...
Provide forward migration for configuration files.
0 module [1];1 function_definition [2,3,5];2 function_name [] envs;3 parameters [4];4 identifier [] self;5 block [6,13];6 expression_statement [7];7 assignment [8,9];8 identifier [] load;9 dictionary [10];10 pair [11,12];11 string [] cmd;12 string [] _file_envs;13 return_statement [14];14 conditional_expression [15,32,...
Return a list of available environments
0 module [1];1 function_definition [2,3,10];2 function_name [] check_stf_agent;3 parameters [4,7];4 default_parameter [5,6];5 identifier [] adbprefix;6 None [];7 default_parameter [8,9];8 identifier [] kill;9 False [];10 block [11,21,29,42,50,144];11 if_statement [12,15];12 comparison_operator [13,14] is;13 identifier ...
return True if agent is alive.
0 module [1];1 function_definition [2,3,6];2 function_name [] write_bool;3 parameters [4,5];4 identifier [] self;5 identifier [] flag;6 block [7];7 if_statement [8,9,17];8 identifier [] flag;9 block [10];10 expression_statement [11];11 call [12,15];12 attribute [13,14];13 identifier [] self;14 identifier [] write;15 ar...
Writes a boolean to the underlying output file as a 1-byte value.
0 module [1];1 function_definition [2,3,5];2 function_name [] _push;3 parameters [4];4 identifier [] self;5 block [6,16,21];6 expression_statement [7];7 assignment [8,9];8 identifier [] push_cmds;9 call [10,15];10 attribute [11,14];11 attribute [12,13];12 identifier [] self;13 identifier [] vcs;14 identifier [] push_co...
Offer to push changes, if needed.
0 module [1];1 function_definition [2,3,6];2 function_name [] focusWindow;3 parameters [4,5];4 identifier [] self;5 identifier [] hwnd;6 block [7,20,24,48];7 expression_statement [8];8 call [9,12];9 attribute [10,11];10 identifier [] Debug;11 identifier [] log;12 argument_list [13,14];13 integer [] 3;14 binary_operator...
Brings specified window to the front
0 module [1];1 function_definition [2,3,10];2 function_name [] calc_buffered_bounds;3 parameters [4,5,6,7,8,9];4 identifier [] format;5 identifier [] bounds;6 identifier [] meters_per_pixel_dim;7 identifier [] layer_name;8 identifier [] geometry_type;9 identifier [] buffer_cfg;10 block [11,17,28,35,42,57,94,109,132];11...
Calculate the buffered bounds per format per layer based on config.
0 module [1];1 function_definition [2,3,6];2 function_name [] _from_dict;3 parameters [4,5];4 identifier [] cls;5 identifier [] _dict;6 block [7,11,32,53,74];7 expression_statement [8];8 assignment [9,10];9 identifier [] args;10 dictionary [];11 if_statement [12,15];12 comparison_operator [13,14] in;13 string [] age;14...
Initialize a Face object from a json dictionary.
0 module [1];1 function_definition [2,3,6];2 function_name [] down;3 parameters [4,5];4 identifier [] self;5 identifier [] point;6 block [7,22,34];7 expression_statement [8];8 assignment [9,12];9 attribute [10,11];10 identifier [] self;11 identifier [] _vdown;12 call [13,14];13 identifier [] arcball_map_to_sphere;14 ar...
Set initial cursor window coordinates and pick constrain-axis.
0 module [1];1 function_definition [2,3,9];2 function_name [] handle;3 parameters [4,5,7];4 identifier [] self;5 list_splat_pattern [6];6 identifier [] args;7 dictionary_splat_pattern [8];8 identifier [] options;9 block [10,22,86];10 expression_statement [11];11 assignment [12,15];12 attribute [13,14];13 identifier [] ...
Lists all the items in a container to stdout.
0 module [1];1 function_definition [2,3,8];2 function_name [] solve;3 parameters [4,5];4 identifier [] self;5 default_parameter [6,7];6 identifier [] solver_klass;7 None [];8 block [9,15,26,42,102,112,140];9 expression_statement [10];10 assignment [11,12];11 identifier [] t0;12 call [13,14];13 identifier [] time;14 arg...
Solves an optimal power flow and returns a results dictionary.
0 module [1];1 function_definition [2,3,7];2 function_name [] _pop_index;3 parameters [4,5,6];4 identifier [] self;5 identifier [] index;6 identifier [] has_default;7 block [8,83,96,100,104];8 try_statement [9,69];9 block [10];10 if_statement [11,14,38];11 comparison_operator [12,13] is;12 identifier [] index;13 identi...
Remove an element by index, or last element.
0 module [1];1 function_definition [2,3,8];2 function_name [] html;3 parameters [4,5,6];4 identifier [] self;5 identifier [] label;6 list_splat_pattern [7];7 identifier [] msg;8 block [9,17,33];9 expression_statement [10];10 assignment [11,12];11 identifier [] lbl;12 binary_operator [13,16] +;13 binary_operator [14,15]...
Prints html in notebook
0 module [1];1 function_definition [2,3,7];2 function_name [] variant;3 parameters [4,5,6];4 identifier [] self;5 identifier [] case_id;6 identifier [] variant_id;7 block [8,17,28,38];8 expression_statement [9];9 assignment [10,11];10 identifier [] case_obj;11 call [12,15];12 attribute [13,14];13 identifier [] self;14 ...
Fetch a single variant from variant source.
0 module [1];1 function_definition [2,3,7];2 function_name [] on_episode_end;3 parameters [4,5,6];4 identifier [] self;5 identifier [] episode;6 identifier [] logs;7 block [8,22,30,73,85,98,109,119,151,172,178];8 expression_statement [9];9 assignment [10,11];10 identifier [] duration;11 binary_operator [12,17] -;12 cal...
Compute and print metrics at the end of each episode
0 module [1];1 function_definition [2,3,6];2 function_name [] get;3 parameters [4,5];4 identifier [] self;5 identifier [] entry;6 block [7,36,53,60,76,85,130];7 if_statement [8,13,24];8 comparison_operator [9,12] ==;9 attribute [10,11];10 identifier [] self;11 identifier [] apiVersion;12 integer [] 1;13 block [14];14 e...
get the value from vault secret backend
0 module [1];1 function_definition [2,3,8];2 function_name [] open;3 parameters [4,5,6,7];4 identifier [] cls;5 identifier [] blob;6 identifier [] username;7 identifier [] password;8 block [9];9 return_statement [10];10 call [11,12];11 identifier [] cls;12 argument_list [13,14];13 identifier [] blob;14 call [15,18];15 ...
Creates a vault from a blob object
0 module [1];1 function_definition [2,3,5];2 function_name [] save;3 parameters [4];4 identifier [] self;5 block [6,12];6 expression_statement [7];7 assignment [8,9];8 identifier [] active_language;9 call [10,11];10 identifier [] get_language;11 argument_list [];12 for_statement [13,16,23];13 tuple_pattern [14,15];14 i...
Save each of the settings to the DB.
0 module [1];1 function_definition [2,3,4];2 function_name [] next_frame_pixel_noise;3 parameters [];4 block [5,11,19,29,39];5 expression_statement [6];6 assignment [7,8];7 identifier [] hparams;8 call [9,10];9 identifier [] next_frame_basic_deterministic;10 argument_list [];11 expression_statement [12];12 call [13,16]...
Basic 2-frame conv model with pixel noise.
0 module [1];1 function_definition [2,3,6];2 function_name [] on_raw_authenticate;3 parameters [4,5];4 identifier [] self;5 identifier [] message;6 block [7,26,37,53];7 if_statement [8,11];8 attribute [9,10];9 identifier [] self;10 identifier [] _sasl_timer;11 block [12,20];12 expression_statement [13];13 call [14,19];...
Received part of the authentication challenge.
0 module [1];1 function_definition [2,3,10];2 function_name [] get;3 parameters [4,5,6,8];4 identifier [] self;5 identifier [] request;6 list_splat_pattern [7];7 identifier [] args;8 dictionary_splat_pattern [9];9 identifier [] kwargs;10 block [11,21,25,29,33,42,81,114,136];11 expression_statement [12];12 assignment [1...
Catch protected relations and show to user.
0 module [1];1 function_definition [2,3,6];2 function_name [] cor;3 parameters [4,5];4 identifier [] y_true;5 identifier [] y_pred;6 block [7,17];7 expression_statement [8];8 assignment [9,12];9 pattern_list [10,11];10 identifier [] y_true;11 identifier [] y_pred;12 call [13,14];13 identifier [] _mask_nan;14 argument_l...
Compute Pearson correlation coefficient.
0 module [1];1 function_definition [2,3,5];2 function_name [] clock_in;3 parameters [4];4 identifier [] request;5 block [6,12,24,45,53,69,116];6 expression_statement [7];7 assignment [8,9];8 identifier [] user;9 attribute [10,11];10 identifier [] request;11 identifier [] user;12 expression_statement [13];13 assignment ...
For clocking the user into a project.