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def pages(self, limit=0): if limit > 0: self.iterator.limit = limit return self.iterator
module function_definition identifier parameters identifier default_parameter identifier integer block if_statement comparison_operator identifier integer block expression_statement assignment attribute attribute identifier identifier identifier identifier return_statement attribute identifier identifier
Return iterator for pages
def query_all_issues(after): page = count(1) data = [] while True: page_data = query_issues(next(page), after) if not page_data: break data.extend(page_data) return data
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list integer expression_statement assignment identifier list while_statement true block expression_statement assignment identifier call identifier argument_list call identifier argument_...
Hits the github API for all closed issues after the given date, returns the data.
def create_cell_renderer_combo(self, tree_view, title="title", assign=0, editable=False, model=None, function=None): renderer_combo = Gtk.CellRendererCombo() renderer_combo.set_property('editable', editable) if model: renderer_combo.set_property('model', model) if function: ...
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier integer default_parameter identifier false default_parameter identifier none default_parameter identifier none block expression_statement assignm...
Function creates a CellRendererCombo with title, model
def field_specific_errors(self): return { key: value for key, value in self.error_dict.items() if key != NON_FIELD_ERRORS }
module function_definition identifier parameters identifier block return_statement dictionary_comprehension pair identifier identifier for_in_clause pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list if_clause comparison_operator identifier identifier
Returns a dictionary of field-specific validation errors for this row.
def update(self): obj = self.__model__.objects.get_for_update(id=self.id) for name, value in self.__dict__.items(): if name in self._properties: setattr(obj, name, value) obj.update() return obj
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list keyword_argument identifier attribute identifier identifier for_statement pattern_list identifier identifier call attr...
Finds record and update it based in serializer values
def load(fname): content = _open(fname).read() if PY2: state = pickle.loads(content) else: state = pickle.loads(content, encoding='latin1') voc, vec = state if len(voc) == 2: words, counts = voc word_count = dict(zip(words, counts)) vocab = CountedVocabulary(word_count=...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list if_statement identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identi...
Load an embedding dump generated by `save`
def nextSunrise(jd, lat, lon): return swe.sweNextTransit(const.SUN, jd, lat, lon, 'RISE')
module function_definition identifier parameters identifier identifier identifier block return_statement call attribute identifier identifier argument_list attribute identifier identifier identifier identifier identifier string string_start string_content string_end
Returns the JD of the next sunrise.
def _ostaunicode(src): if have_py_3: bytename = src else: bytename = src.decode('utf-8') try: enc = bytename.encode('latin-1') encbyte = b'\x08' except (UnicodeEncodeError, UnicodeDecodeError): enc = bytename.encode('utf-16_be') encbyte = b'\x10' retur...
module function_definition identifier parameters identifier block if_statement identifier block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end try_statemen...
Internal function to create an OSTA byte string from a source string.
def unwrap(self): red = [self.red[i] for i in range(self.size)] green = [self.green[i] for i in range(self.size)] blue = [self.blue[i] for i in range(self.size)] if NORMALIZE_GAMMA_RAMPS: red = [value / 65535.0 for value in red] green = [value / 65535.0 for value ...
module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension subscript attribute identifier identifier identifier for_in_clause identifier call identifier argument_list attribute identifier identifier expression_statement assignment identifier list_comp...
Returns a GLFWgammaramp object.
def _slugify_internal_collection_name(self, json_repr): collection = self._coerce_json_to_collection(json_repr) if collection is None: return None internal_name = collection['name'] return slugify(internal_name)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier none block return_statement none expression_statement assignment identifier subscript identifi...
Parse the JSON, find its name, return a slug of its name
def as_dict(self): "json friendly dict representation" d = {} d["@module"] = self.__class__.__module__ d["@class"] = self.__class__.__name__ d["spin_mode"] = self.spin_mode.as_dict() d["smearing"] = self.smearing.as_dict() d["algorithm"] = self.algorithm.as_dict()...
module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier dictionary expression_statement assignment subscript identifier string string_start string_content string_end attribute attribute identifier ide...
json friendly dict representation
def config(self, name, suffix): "Return config variable value, defaulting to environment" var = '%s_%s' % (name, suffix) var = var.upper().replace('-', '_') if var in self._config: return self._config[var] return os.environ[var]
module function_definition identifier parameters identifier identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier identifier expression_statement assignment ...
Return config variable value, defaulting to environment
def submit_sample_url(self, url, params={}, _extra_params={}): self._check_user_parameters(params) params = copy.copy(params) params['sample-url'] = url return self._submit(params, _extra_params=_extra_params)
module function_definition identifier parameters identifier identifier default_parameter identifier dictionary default_parameter identifier dictionary block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier ...
Submit a sample at a given URL for analysis.
def change_number_matches(self, current_match=0, total_matches=0): if current_match and total_matches: matches_string = u"{} {} {}".format(current_match, _(u"of"), total_matches) self.number_matches_text.setText(matches_string) ...
module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier integer block if_statement boolean_operator identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argumen...
Change number of match and total matches.
def _febrl_links(df): index = df.index.to_series() keys = index.str.extract(r'rec-(\d+)', expand=True)[0] index_int = numpy.arange(len(df)) df_helper = pandas.DataFrame({ 'key': keys, 'index': index_int }) pairs_df = df_helper.merge( df_helper, on='key' )[['index_x', ...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier subscript call attribute attribute identifier identifier identifier argument_list string string_...
Get the links of a FEBRL dataset.
def stop_containers(self): while len(self._containers): container = self._containers.pop() try: container.kill(signal.SIGKILL) except docker.errors.APIError: pass
module function_definition identifier parameters identifier block while_statement call identifier argument_list attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list try_statement block expression_statement call attribute...
Stops all containers used by this instance of the backend.
def _simple_command(self, command, arg=None, **kwargs): self._protocol.send_command(command, arg) return self._protocol.handle_simple_responses(**kwargs)
module function_definition identifier parameters identifier identifier default_parameter identifier none dictionary_splat_pattern identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier return_statement call attribute attribute identifier ident...
Send a simple command.
def list_security_group_rules(self, retrieve_all=True, **_params): return self.list('security_group_rules', self.security_group_rules_path, retrieve_all, **_params)
module function_definition identifier parameters identifier default_parameter identifier true dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier identifier dictionary_splat identifier
Fetches a list of all security group rules for a project.
def intinlist(lst): for item in lst: try: item = int(item) return True except ValueError: pass return False
module function_definition identifier parameters identifier block for_statement identifier identifier block try_statement block expression_statement assignment identifier call identifier argument_list identifier return_statement true except_clause identifier block pass_statement return_statement false
test if int in list
def _create_config(self): configinfo = {'creation_date': [ datetime.datetime.now().date().isoformat()], 'author': [self.site.site_config['default_author']], 'status': [u'draft'], 'lang': [u''], 'tags': [u''], ...
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end list call attribute call attribute call attribute attribute identifier identifier identifier argument_list identifier argument_list identifier argume...
Create the default configuration dictionary for this page.
def ping(): try: curl_couchdb('/cozy/') ping = True except requests.exceptions.ConnectionError, error: print error ping = False return ping
module function_definition identifier parameters block try_statement block expression_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier true except_clause attribute attribute identifier identifier identifier identifier block print_statement ...
Ping CozyDB with existing credentials
def _delete(collection_name, spec, opts, flags): encoded = _dict_to_bson(spec, False, opts) return b"".join([ _ZERO_32, _make_c_string(collection_name), _pack_int(flags), encoded]), len(encoded)
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier false identifier return_statement expression_list call attribute string string_start string_end identifier argument_list list identifier ...
Get an OP_DELETE message.
def logp_partial_gradient(self, variable, calculation_set=None): if self.verbose > 0: print_('\t' + self.__name__ + ': logp_partial_gradient accessed.') if not (datatypes.is_continuous(variable) and datatypes.is_continuous(self)): return zeros(shape(variable.value...
module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement comparison_operator attribute identifier identifier integer block expression_statement call identifier argument_list binary_operator binary_operator string string_start string_content escape_seque...
gets the logp gradient of this deterministic with respect to variable
def argmax(self): if "argmax" not in self.attrs.keys(): def f(dataset, s): arr = dataset[s] try: amin = np.nanargmax(arr) except ValueError: amin = 0 idx = np.unravel_index(amin, arr.shape) ...
module function_definition identifier parameters identifier block if_statement comparison_operator string string_start string_content string_end call attribute attribute identifier identifier identifier argument_list block function_definition identifier parameters identifier identifier block expression_statement assign...
Index of the maximum, ignorning nans.
def sample(self, histogram_logits): histogram_probs = histogram_logits.exp() atoms = self.support_atoms.view(1, 1, self.atoms) return (histogram_probs * atoms).sum(dim=-1).argmax(dim=1)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list integer integer attribute identifi...
Sample from a greedy strategy with given q-value histogram
def _contains_cftime_datetimes(array) -> bool: try: from cftime import datetime as cftime_datetime except ImportError: return False else: if array.dtype == np.dtype('O') and array.size > 0: sample = array.ravel()[0] if isinstance(sample, dask_array_type): ...
module function_definition identifier parameters identifier type identifier block try_statement block import_from_statement dotted_name identifier aliased_import dotted_name identifier identifier except_clause identifier block return_statement false else_clause block if_statement boolean_operator comparison_operator at...
Check if an array contains cftime.datetime objects
def as_dict(self): return {self.FLD_OP: self._op.name, self.FLD_MARK: self._pos, self.FLD_FLD: self._fld}
module function_definition identifier parameters identifier block return_statement dictionary pair attribute identifier identifier attribute attribute identifier identifier identifier pair attribute identifier identifier attribute identifier identifier pair attribute identifier identifier attribute identifier identifie...
Representation as a dict for JSON serialization.
def to_cls(self): try: if isinstance(self._to_cls, str): self._to_cls = fetch_entity_cls_from_registry(self._to_cls) except AssertionError: pass return self._to_cls
module function_definition identifier parameters identifier block try_statement block if_statement call identifier argument_list attribute identifier identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier except_clause id...
Property to retrieve to_cls as an entity when possible
def fw_create(self, data, fw_name=None, cache=False): LOG.debug("FW create %s", data) try: self._fw_create(fw_name, data, cache) except Exception as exc: LOG.error("Exception in fw_create %s", str(exc))
module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier false block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier try_statement block expression_statement call...
Top level FW create function.
def remove_file(self): if not self.fullpath or not self.archived: raise RuntimeError() try: os.remove(self.fullpath) except: print("Error removing %s: %s" % (self.fullpath, sys.exc_info()[1]))
module function_definition identifier parameters identifier block if_statement boolean_operator not_operator attribute identifier identifier not_operator attribute identifier identifier block raise_statement call identifier argument_list try_statement block expression_statement call attribute identifier identifier argu...
Removes archived file associated with this DP
def format_item(item, template, name='item'): ctx = {name: item} return render_template_to_string(template, **ctx)
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier dictionary pair identifier identifier return_statement call identifier argument_list identifier dictionary_splat identifier
Render a template to a string with the provided item in context.
def message_info(message): method = message.get('method') msgid = message.get('id') error = message.get('error') if method and msgid is not None: return 'method call "{}", id = "{}"'.format(method, msgid) elif method: return 'notification "{}"'.format(method) elif error is not No...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start ...
Return a string describing a message, for debugging purposes.
def _sanitize_numbers(uncleaned_numbers): cleaned_numbers = [] for x in uncleaned_numbers: try: cleaned_numbers.append(int(x)) except ValueError: cleaned_numbers.append(x) return cleaned_numbers
module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list call identifier argument_list identifier except_clause identifier block ...
Convert strings to integers if possible
def requestSubsystem(self, subsystem): data = common.NS(subsystem) return self.sendRequest('subsystem', data, wantReply=True)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier keyword_argum...
Request a subsystem and return a deferred reply.
def setup(self, redis_conn=None, host='localhost', port=6379): if redis_conn is None: if host is not None and port is not None: self.redis_conn = redis.Redis(host=host, port=port) else: raise Exception("Please specify some form of connection " ...
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier string string_start string_content string_end default_parameter identifier integer block if_statement comparison_operator identifier none block if_statement boolean_operator comparison_operator ide...
Set up the redis connection
def dict(self): return_obj = {} for attr in dir(self): if not attr.startswith('__') and attr not in self.__reserved: if isinstance(getattr(self, attr), list): return_val = [] for item in getattr(self, attr): if i...
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier call identifier argument_list identifier block if_statement boolean_operator not_operator call attribute identifier identifier argument_list string string_start string_content...
converts the class to a dictionary object
def load_buildfile(self, target): log.info('Loading: %s', target) filepath = os.path.join(target.path, app.get_options().buildfile_name) try: repo = self.repo_state.GetRepo(target.repo) return repo.get_file(filepath) except gitrepo.GitError as err: log...
module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list...
Pull a build file from git.
def vhost_remove(cls, name): oper = cls.call('hosting.rproxy.vhost.delete', name) cls.echo('Deleting your virtual host %s' % name) cls.display_progress(oper) cls.echo('Your virtual host have been removed') return oper
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list binary_operator stri...
Delete a vhost in a webaccelerator
def _from_dict(cls, _dict): args = {} if 'start_time' in _dict: args['start_time'] = _dict.get('start_time') else: raise ValueError( 'Required property \'start_time\' not present in WordAlternativeResults JSON' ) if 'end_time' in _dict:...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content strin...
Initialize a WordAlternativeResults object from a json dictionary.
def export_data( self ): klass = self.__class__ output = bytearray( b'\x00'*self.get_size() ) queue = [] for name in klass._fields: self.scrub_field( name ) self.validate_field( name ) self.update_deps() for name in klass._fields: klass...
module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list binary_operator string string_start string_content escape_sequence string_end call attribute identifier id...
Export data to a byte array.
def formatBodyNode(root,path): body = root body.name = "body" body.weight = calcFnWeight(body) body.path = path body.pclass = None return body
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier identifier expression_statement assignment attribute identifier identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier call identifier...
Format the root node for use as the body node.
def publish_json(self, channel, obj): return self.publish(channel, json.dumps(obj))
module function_definition identifier parameters identifier identifier identifier block return_statement call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier
Post a JSON-encoded message to channel.
def delete(*args): from syn.base_utils import this_module mod = this_module(npop=3) yield for arg in args: name = arg if not isinstance(name, STR): name = arg.__name__ delattr(mod, name)
module function_definition identifier parameters list_splat_pattern identifier block import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier integer expression_statement yield for_statement identi...
For using then deleting objects.
def provision(self, tool: Tool) -> docker.models.containers.Container: if not self.is_installed(tool): raise Exception("tool is not installed: {}".format(tool.name)) client = self.__installation.docker return client.containers.create(tool.image)
module function_definition identifier parameters identifier typed_parameter identifier type identifier type attribute attribute attribute identifier identifier identifier identifier block if_statement not_operator call attribute identifier identifier argument_list identifier block raise_statement call identifier argume...
Provisions a mountable Docker container for a given tool.
def init_datamembers(self, rec): if 'synonym' in self.optional_attrs: rec.synonym = [] if 'xref' in self.optional_attrs: rec.xref = set() if 'subset' in self.optional_attrs: rec.subset = set() if 'comment' in self.optional_attrs: rec.comment = "" if 'relat...
module function_definition identifier parameters identifier identifier block if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement assignment attribute identifier identifier list if_statement comparison_operator string string_start stri...
Initialize current GOTerm with data members for storing optional attributes.
async def json(self, *, encoding: str=None, loads: JSONDecoder=DEFAULT_JSON_DECODER, content_type: Optional[str]='application/json') -> Any: if self._body is None: await self.read() if content_type: ctype = self.headers.get(hdrs.CONTENT_TYPE,...
module function_definition identifier parameters identifier keyword_separator typed_default_parameter identifier type identifier none typed_default_parameter identifier type identifier identifier typed_default_parameter identifier type generic_type identifier type_parameter type identifier string string_start string_co...
Read and decodes JSON response.
def real_ip(self): if self._real_ip is None: response = get(ICANHAZIP) self._real_ip = self._get_response_text(response) return self._real_ip
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment attribute identifier identifier call attribute identifier iden...
The actual public IP of this host.
def hide_navbar_items(portal): logger.info("*** Hide Navigation Items ***") object_ids = portal.objectIds() object_ids = filter(lambda id: id in object_ids, NAV_BAR_ITEMS_TO_HIDE) for object_id in object_ids: item = portal[object_id] item.setExcludeFromNav(True) item.reindexObjec...
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier...
Hide root items in navigation
def main(): if sys.version_info[0] < 3: sys.stdout = codecs.getwriter("utf-8")(sys.stdout) options = docopt.docopt(__doc__, help=True, version='template_remover v%s' % __VERSION__) print(template_remover.clean(io.open(options['FILENAME']).read(...
module function_definition identifier parameters block if_statement comparison_operator subscript attribute identifier identifier integer integer block expression_statement assignment attribute identifier identifier call call attribute identifier identifier argument_list string string_start string_content string_end ar...
Entry point for remove_template.
def _tail_profile(self, db, interval): latest_doc = None while latest_doc is None: time.sleep(interval) latest_doc = db['system.profile'].find_one() current_time = latest_doc['ts'] while True: time.sleep(interval) cursor = db['system.profil...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier none while_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier ...
Tails the system.profile collection
def ffill(arr, dim=None, limit=None): import bottleneck as bn axis = arr.get_axis_num(dim) _limit = limit if limit is not None else arr.shape[axis] return apply_ufunc(bn.push, arr, dask='parallelized', keep_attrs=True, output_dtypes=[a...
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none block import_statement aliased_import dotted_name identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_stat...
forward fill missing values
def walk_json(d, func): if isinstance(d, Mapping): return OrderedDict((k, walk_json(v, func)) for k, v in d.items()) elif isinstance(d, list): return [walk_json(v, func) for v in d] else: return func(d)
module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier identifier block return_statement call identifier generator_expression tuple identifier call identifier argument_list identifier identifier for_in_clause pattern_list identifier identifier ...
Walk over a parsed JSON nested structure `d`, apply `func` to each leaf element and replace it with result
def aead_filename(aead_dir, key_handle, public_id): parts = [aead_dir, key_handle] + pyhsm.util.group(public_id, 2) + [public_id] return os.path.join(*parts)
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator binary_operator list identifier identifier call attribute attribute identifier identifier identifier argument_list identifier integer list identifier return_statement call a...
Return the filename of the AEAD for this public_id.
def init_limit(self, key, lower=None, upper=None, limit=False): above = agtb(self.__dict__[key], upper) for idx, item in enumerate(above): if item == 0.: continue maxval = upper[idx] self.log( '{0} <{1}.{2}> above its maximum of {3}.'.f...
module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier false block expression_statement assignment identifier call identifier argument_list subscript attribute identifier identifier identifier identifier for...
check if data is within limits. reset if violates
def generate_specifications(self, count=1): out = {} copy_from = self.get_copy_from() for arnum in range(count): source = copy_from.get(arnum) if source is None: out[arnum] = {} continue results_range = source.getResultsRange() ...
module function_definition identifier parameters identifier default_parameter identifier integer block expression_statement assignment identifier dictionary expression_statement assignment identifier call attribute identifier identifier argument_list for_statement identifier call identifier argument_list identifier blo...
Returns a mapping of count -> specification
def squeeze(attrs, inputs, proto_obj): new_attrs = translation_utils._fix_attribute_names(attrs, {'axes' : 'axis'}) return 'squeeze', new_attrs, inputs
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier dictionary pair string string_start string_content string_end string string_start string_content string_end return_statement ex...
Remove single-dimensional entries from the shape of a tensor.
def permute(self, ba): c = ba.copy() for i in xrange(len(self.mapping)): ba[i] = c[self.mapping[i]] return ba
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list for_statement identifier call identifier argument_list call identifier argument_list attribute identifier identifier block expression_statement assig...
Permute the bitarray ba inplace.
def field_factory(base_class): from .fields import TranslationField class TranslationFieldField(TranslationField, base_class): pass TranslationFieldField.__name__ = "Translation%s" % base_class.__name__ return TranslationFieldField
module function_definition identifier parameters identifier block import_from_statement relative_import import_prefix dotted_name identifier dotted_name identifier class_definition identifier argument_list identifier identifier block pass_statement expression_statement assignment attribute identifier identifier binary_...
Takes a field base class and wrap it with ``TranslationField`` class.
def nmltostring(nml): if not isinstance(nml,dict): raise ValueError("nml should be a dict !") curstr = "" for key,group in nml.items(): namelist = ["&" + key] for k, v in group.items(): if isinstance(v, list) or isinstance(v, tuple): namelist.append(k + " = " + ",".jo...
module function_definition identifier parameters identifier block if_statement not_operator call identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier string string_start string_end for_...
Convert a dictionary representing a Fortran namelist into a string.
def elapsed(self): if not self.started or self._start_time is None: return 0.0 return self._timing_data[-1][0] - self._start_time
module function_definition identifier parameters identifier block if_statement boolean_operator not_operator attribute identifier identifier comparison_operator attribute identifier identifier none block return_statement float return_statement binary_operator subscript subscript attribute identifier identifier unary_op...
Returns the number of seconds it has been since the start until the latest entry.
def task_stop(self, **kw): id, task = self.get_task(**kw) self._execute(id, 'stop') return self.get_task(uuid=task['uuid'])[1]
module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list dictionary_splat identifier expression_statement call attribute identifier identifier argument_list ...
Marks a task as stopped.
def cmd_xcode(self, *args): app_name = self.buildozer.namify(self.buildozer.config.get('app', 'package.name')) app_name = app_name.lower() ios_dir = ios_dir = join(self.buildozer.platform_dir, 'kivy-ios') self.buildozer.cmd('open {}.xcodeproj'.format( app_name), c...
module function_definition identifier parameters identifier list_splat_pattern identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute attribute identifier identifier identifier identifier argument_list string string_st...
Open the xcode project.
def cleanup_lib(self): if not self.using_openmp: logging.debug('unloading shared library') _ctypes.dlclose(self.lib._handle)
module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list ...
unload the previously loaded shared library
def saccadic_momentum_effect(durations, forward_angle, summary_stat=nanmean): durations_per_da = np.nan * np.ones((len(e_angle) - 1,)) for i, (bo, b1) in enumerate(zip(e_angle[:-1], e_angle[1:])): idx = ( bo <= forward_angle) & ( forward_angle < b1) &...
module function_definition identifier parameters identifier identifier default_parameter identifier identifier block expression_statement assignment identifier binary_operator attribute identifier identifier call attribute identifier identifier argument_list tuple binary_operator call identifier argument_list identifie...
Computes the mean fixation duration at forward angles.
def _sample(probability_vec): return map(int, numpy.random.random(probability_vec.size) <= probability_vec)
module function_definition identifier parameters identifier block return_statement call identifier argument_list identifier comparison_operator call attribute attribute identifier identifier identifier argument_list attribute identifier identifier identifier
Return random binary string, with given probabilities.
def _remove_references(self, removed_part): removed_part.parent = None referrers_to_remove = set() for referrer in removed_part.referrers: if removed_part not in referrer.ancestors(): for label, referred_part in list(referrer.labels.items()): if re...
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier none expression_statement assignment identifier call identifier argument_list for_statement identifier attribute identifier identifier block if_statement comparison_operator ident...
Remove labels pointing to this part and vice versa.
def _load_version(cls, state, version): from ._audio_feature_extractor import _get_feature_extractor from .._mxnet import _mxnet_utils state['_feature_extractor'] = _get_feature_extractor(state['feature_extractor_name']) num_classes = state['num_classes'] num_inputs = state['_fea...
module function_definition identifier parameters identifier identifier identifier block import_from_statement relative_import import_prefix dotted_name identifier dotted_name identifier import_from_statement relative_import import_prefix dotted_name identifier dotted_name identifier expression_statement assignment subs...
A function to load a previously saved SoundClassifier instance.
def session(self): from sqlalchemy.orm import sessionmaker from sqlalchemy.event import listen if not self.Session: self.Session = sessionmaker(bind=self.engine) if not self._session: self._session = self.Session() if self._schema: def ...
module function_definition identifier parameters identifier block import_from_statement dotted_name identifier identifier dotted_name identifier import_from_statement dotted_name identifier identifier dotted_name identifier if_statement not_operator attribute identifier identifier block expression_statement assignment ...
Return a SqlAlchemy session.
def analyses_info(self): f_config = os.path.join(self.analyses_path, 'index.yaml') tornado.autoreload.watch(f_config) with io.open(f_config, 'r', encoding='utf8') as f: config = yaml.safe_load(f) self.info.update(config) if self.debug: self.info['versi...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier string string_start string_content string_end expression_statement call attribute attribute identifier iden...
Add analyses from the analyses folder.
def _ask(question, default=None, data_type='str', show_hint=False): data = default if data_type == 'bool': data = None default_string = "Y" if default else "N" while data not in ('Y', 'J', 'N', '1', '0'): data = input("%s? [%s]: " % (question, default_string)).upper() ...
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier string string_start string_content string_end default_parameter identifier false block expression_statement assignment identifier identifier if_statement comparison_operator identifier string strin...
Interactively ask the user for data
def slicenet_params1_tiny(): hparams = slicenet_params1() hparams.attention_type = "simple" hparams.separability = 0 hparams.hidden_size = 128 hparams.num_hidden_layers = 2 hparams.batch_size = 512 hparams.learning_rate_warmup_steps = 200 return hparams
module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier integer expression...
Version for fast local runs.
def skew_normal_expval(mu, tau, alpha): delta = alpha / np.sqrt(1. + alpha ** 2) return mu + np.sqrt(2 / pi / tau) * delta
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator identifier call attribute identifier identifier argument_list binary_operator float binary_operator identifier integer return_statement binary_operator identifier binary_ope...
Expectation of skew-normal random variables.
def raw(self, from_, to, body): if isinstance(to, string_types): raise TypeError('"to" parameter must be enumerable') return self._session.post('{}/raw'.format(self._url), json={ 'from': from_, 'to': to, 'body': body, }).json()
module function_definition identifier parameters identifier identifier identifier identifier block if_statement call identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end return_statement call attribute call attribute attribute i...
Send a raw MIME message.
def parse_sm_config(): sagemaker_config = "/opt/ml/input/config/hyperparameters.json" if os.path.exists(sagemaker_config): conf = {} conf["sagemaker_training_job_name"] = os.getenv('TRAINING_JOB_NAME') for k, v in six.iteritems(json.load(open(sagemaker_config))): cast = v.str...
module function_definition identifier parameters block expression_statement assignment identifier string string_start string_content string_end if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier dictionary expression_statement...
Attempts to parse SageMaker configuration returning False if it can't find it
def iter_links_element_text(cls, element): if element.text: link_type = identify_link_type(element.text) yield LinkInfo( element=element, tag=element.tag, attrib=None, link=element.text, inline=False, linked=True, base_link=...
module function_definition identifier parameters identifier identifier block if_statement attribute identifier identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement yield call identifier argument_list keyword_argument identifier id...
Get the element text as a link.
def find_focusable(node): if not node.children: return node if node.focus: return find_focusable(node.children_dict[node.focus[0]])
module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement identifier if_statement attribute identifier identifier block return_statement call identifier argument_list subscript attribute identifier identifier subscript attribute id...
Search for the first focusable window within the node tree
def file_containing_import(import_path, import_root): if not _import_paths: load_stdlib() if os.path.isfile(import_root): import_root = os.path.dirname(import_root) search_paths = [import_root] + _import_paths module_parts = import_path.split('.') for i in range(len(module_parts), 0,...
module function_definition identifier parameters identifier identifier block if_statement not_operator identifier block expression_statement call identifier argument_list if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier call...
Finds the file that might contain the import_path.
def process_role(ctx, param, value): role = Role.query.filter(Role.name == value).first() if not role: raise click.BadParameter('Role with name \'%s\' not found.', value) return role
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list comparison_operator attribute identifier identifier identifier identifier argument_list if_statement n...
Return a role if it exists.
def _glyph_for_complex_pattern(self, pattern): monomer_glyphs = [] for monomer_pattern in pattern.monomer_patterns: glyph = self._glyph_for_monomer_pattern(monomer_pattern) monomer_glyphs.append(glyph) if len(monomer_glyphs) > 1: pattern.matches_key = lambda: ...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call a...
Add glyph and member glyphs for a PySB ComplexPattern.
def _imm_repr(self): return (type(self).__name__ + ('(' if _imm_is_persist(self) else '*(') + ', '.join([k + '=' + str(v) for (k,v) in six.iteritems(imm_params(self))]) + ')')
module function_definition identifier parameters identifier block return_statement parenthesized_expression binary_operator binary_operator binary_operator attribute call identifier argument_list identifier identifier parenthesized_expression conditional_expression string string_start string_content string_end call ide...
The default representation function for an immutable object.
def _set_scatter_signature(self): self._scatter_signature = (self.thet0, self.thet, self.phi0, self.phi, self.alpha, self.beta, self.orient)
module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier tuple attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier ide...
Mark the amplitude and scattering matrices as up to date.
def match(self, *args, **kwargs): return self._any_args or \ self._arguments_rule.validate(*args, **kwargs)
module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block return_statement boolean_operator attribute identifier identifier line_continuation call attribute attribute identifier identifier identifier argument_list list_splat identifier dictionary...
Check the if these args match this expectation.
def _query(self, filename): log.Info('Querying size of %s' % filename) from jottalib.JFS import JFSNotFoundError, JFSIncompleteFile remote_path = posixpath.join(self.folder.path, filename) try: remote_file = self.client.getObject(remote_path) except JFSNotFoundError: ...
module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier import_from_statement dotted_name identifier identifier dotted_name identifier dotted_name identif...
Get size of filename
def _build_matrix(p, q, deriv): A = [([1 for _ in range(-p, q+1)])] for i in range(1, p + q + 1): A.append([j**i for j in range(-p, q+1)]) return np.array(A)
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list parenthesized_expression list_comprehension integer for_in_clause identifier call identifier argument_list unary_operator identifier binary_operator identifier integer for_statement id...
Constructs the equation system matrix for the finite difference coefficients
def _setup_log_prefix(self, plugin_id=''): self._logger_console_fmtter.prefix = '%s: ' % plugin_id self._logger_console_fmtter.plugin_id = plugin_id self._logger_file_fmtter.prefix = '*' self._logger_file_fmtter.plugin_id = '%s: ' % plugin_id
module function_definition identifier parameters identifier default_parameter identifier string string_start string_end block expression_statement assignment attribute attribute identifier identifier identifier binary_operator string string_start string_content string_end identifier expression_statement assignment attr...
Setup custom warning notification.
def encode_metadata(self): encoded_list = [] for key, value in iteritems(self.metadata): key_str = str(key) if re.search(r'^$|[\s,]+', key_str): msg = 'Upload-metadata key "{}" cannot be empty nor contain spaces or commas.' raise ValueError(msg.for...
module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement pattern_list identifier identifier call identifier argument_list attribute identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_st...
Return list of encoded metadata as defined by the Tus protocol.
def make(parser): parser.add_argument( 'mon', metavar='HOST', nargs='+', help='monitor host to pull keys from', ) parser.set_defaults( func=gatherkeys, )
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end keyword_argument identifier string string_start string_content...
Gather authentication keys for provisioning new nodes.
def decrypt(secret, modN, d, blockSize): numBlocks = [modExp(blocks, d, modN) for blocks in secret] numList = blocks2numList(numBlocks, blockSize) return numList2string(numList)
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier list_comprehension call identifier argument_list identifier identifier identifier for_in_clause identifier identifier expression_statement assignment identifier call identifier a...
reverse function of encrypt
def stop_all(self): for alias, service in self._service_objects.items(): if service.is_alive: with expects.expect_no_raises( 'Failed to stop service "%s".' % alias): service.stop()
module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement attribute identifier identifier block with_statement with_clause with_item call attribute identifier identifier ar...
Stops all active service instances.
def unmarshal_event(self, data: str, response_type): js = json.loads(data) js['raw_object'] = js['object'] if js['type'].lower() == 'error': return js if response_type is not None: js['object'] = self._api_client.deserialize( response=SimpleNamespa...
module function_definition identifier parameters identifier typed_parameter identifier type identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_...
Return the K8s response `data` in JSON format.
def config_from_prefix(prefix): settings = {} if prefix.lower() in ('default', 'auto', ''): settings['zmq_prefix'] = '' settings['libzmq_extension'] = False settings['no_libzmq_extension'] = False elif prefix.lower() in ('bundled', 'extension'): settings['zmq_prefix'] = '' ...
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary if_statement comparison_operator call attribute identifier identifier argument_list tuple string string_start string_content string_end string string_start string_content string_end string string_star...
Get config from zmq prefix
def _filter_queryset(self, perms, queryset): user = self.request.user if self.request else AnonymousUser() return get_objects_for_user(user, perms, queryset)
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier conditional_expression attribute attribute identifier identifier identifier attribute identifier identifier call identifier argument_list return_statement call identifier argument_list iden...
Filter object objects by permissions of user in request.
def next_id(self): msgid = self._id_template.format(self._next_id) self._next_id += 1 return msgid
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement augmented_assignment attribute identifier identifier integer return_statement identifi...
Return a unique message ID.
def on_response(self, msg: Dict[str, str]) -> None: response = msg.get('data', False) if response: task = self.__tasks.pop(msg.get('reqid'), False) if task and not task.cancelled() and not task.done(): task.set_result(msg.get('data'))
module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier type identifier type none block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end f...
Run when get response from browser.
def isargument(self, node): try: node_id, _ = self.node_to_id(node) return (node_id in self.name_to_nodes and any([isinstance(n, ast.Name) and isinstance(n.ctx, ast.Param) for n in self.name_to_nodes[node_id]])) ...
module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier return_statement parenthesized_expression boolean_operator comparison_operator identifier attr...
checks whether node aliases to a parameter.
def _process_out_of_bounds(self, value, start, end): "Clips out of bounds values" if isinstance(value, np.datetime64): v = dt64_to_dt(value) if isinstance(start, (int, float)): start = convert_timestamp(start) if isinstance(end, (int, float)): ...
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement string string_start string_content string_end if_statement call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier call identifier arg...
Clips out of bounds values
def disconnect(self): _LOGGING.debug('Disconnecting from stream: %s', self.name) self.kill_thrd.set() self.thrd.join() _LOGGING.debug('Event stream thread for %s is stopped', self.name) self.kill_thrd.clear()
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list expression_...
Disconnect from event stream.
def update_entitlement(owner, repo, identifier, name, token, show_tokens): client = get_entitlements_api() data = {} if name is not None: data["name"] = name if token is not None: data["token"] = token with catch_raise_api_exception(): data, _, headers = client.entitlements_p...
module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier dictionary if_statement comparison_operator identifier none block expression_statem...
Update an entitlement in a repository.
def _parse_resource_declarations(cls, declarations, resource_map): resources = {} for decl in declarations: name = decl.pop('name') typename = decl.pop('type') desc = decl.pop('description', None) autocreate = decl.pop('autocreate', False) args...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_...
Parse out what resources are declared as shared for this recipe.
def find_genome_length(self): for sample in self.metadata: sample[self.analysistype].genome_length = sum(sample[self.analysistype].contig_lengths)
module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block expression_statement assignment attribute subscript identifier attribute identifier identifier identifier call identifier argument_list attribute subscript identifier attribute identifier ide...
Determine the total length of all the contigs for each strain