code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def trigger_event(self, module_name, event):
if module_name:
self._py3_wrapper.events_thread.process_event(module_name, event) | module function_definition identifier parameters identifier identifier identifier block if_statement identifier block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier | Trigger an event on a named module. |
def _sge_get_slots(xmlstring):
rootxml = ET.fromstring(xmlstring)
my_machine_dict = {}
for queue_list in rootxml.iter("Queue-List"):
my_hostname = queue_list.find("name").text.rsplit("@")[-1]
my_slots = queue_list.find("slots_total").text
my_machine_dict[my_hostname] = {}
my_machine_dict[my_hostname]["slots_total"] = int(my_slots)
return my_machine_dict | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier dictionary for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier subscript call attribute attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier argument_list string string_start string_content string_end unary_operator integer expression_statement assignment identifier attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment subscript identifier identifier dictionary expression_statement assignment subscript subscript identifier identifier string string_start string_content string_end call identifier argument_list identifier return_statement identifier | Get slot information from qstat |
def extract(ctx, input, output):
log.info('chemdataextractor.extract')
log.info('Reading %s' % input.name)
doc = Document.from_file(input, fname=input.name)
records = [record.serialize(primitive=True) for record in doc.records]
jsonstring = json.dumps(records, indent=2, ensure_ascii=False)
output.write(jsonstring) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier attribute identifier identifier expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list keyword_argument identifier true for_in_clause identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier integer keyword_argument identifier false expression_statement call attribute identifier identifier argument_list identifier | Run ChemDataExtractor on a document. |
def _cbGotHello(self, busName):
self.busName = busName
self.factory._ok(self) | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Called in reply to the initial Hello remote method invocation |
def _load_config_file(self):
with open(self._config_file) as f:
config = yaml.safe_load(f)
patch_config(config, self.__environment_configuration)
return config | module function_definition identifier parameters identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list identifier attribute identifier identifier return_statement identifier | Loads config.yaml from filesystem and applies some values which were set via ENV |
def category_count(self):
category_dict = self.categories
count_dict = {category: len(
category_dict[category]) for category in category_dict}
return count_dict | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier dictionary_comprehension pair identifier call identifier argument_list subscript identifier identifier for_in_clause identifier identifier return_statement identifier | Returns the number of categories in `categories`. |
def save(self) -> None:
logger.info('saving registry to: %s', self.__registry_fn)
d = [s.to_dict() for s in self]
os.makedirs(self.__path, exist_ok=True)
with open(self.__registry_fn, 'w') as f:
yaml.dump(d, f, indent=2, default_flow_style=False)
logger.info('saved registry to: %s', self.__registry_fn) | module function_definition identifier parameters identifier type none block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list for_in_clause identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier true with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier identifier keyword_argument identifier integer keyword_argument identifier false expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier | Saves the contents of the source manager to disk. |
def visibility(vis: Number, unit: str = 'm') -> str:
if not vis:
return 'Visibility unknown'
if vis.value is None or '/' in vis.repr:
ret_vis = vis.spoken
else:
ret_vis = translate.visibility(vis, unit=unit)
if unit == 'm':
unit = 'km'
ret_vis = ret_vis[:ret_vis.find(' (')].lower().replace(unit, '').strip()
ret_vis = core.spoken_number(core.remove_leading_zeros(ret_vis))
ret = 'Visibility ' + ret_vis
if unit in SPOKEN_UNITS:
if '/' in vis.repr and 'half' not in ret:
ret += ' of a'
ret += ' ' + SPOKEN_UNITS[unit]
if not (('one half' in ret and ' and ' not in ret) or 'of a' in ret):
ret += 's'
else:
ret += unit
return ret | module function_definition identifier parameters typed_parameter identifier type identifier typed_default_parameter identifier type identifier string string_start string_content string_end type identifier block if_statement not_operator identifier block return_statement string string_start string_content string_end if_statement boolean_operator comparison_operator attribute identifier identifier none comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement assignment identifier attribute identifier identifier else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute call attribute call attribute subscript identifier slice call attribute identifier identifier argument_list string string_start string_content string_end identifier argument_list identifier argument_list identifier string string_start string_end identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator string string_start string_content string_end identifier if_statement comparison_operator identifier identifier block if_statement boolean_operator comparison_operator string string_start string_content string_end attribute identifier identifier comparison_operator string string_start string_content string_end identifier block expression_statement augmented_assignment identifier string string_start string_content string_end expression_statement augmented_assignment identifier binary_operator string string_start string_content string_end subscript identifier identifier if_statement not_operator parenthesized_expression boolean_operator parenthesized_expression boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier block expression_statement augmented_assignment identifier string string_start string_content string_end else_clause block expression_statement augmented_assignment identifier identifier return_statement identifier | Format visibility details into a spoken word string |
def create_mv_rule(tensorprod_rule, dim):
def mv_rule(order, sparse=False, part=None):
if sparse:
order = numpy.ones(dim, dtype=int)*order
tensorprod_rule_ = lambda order, part=part:\
tensorprod_rule(order, part=part)
return chaospy.quad.sparse_grid(tensorprod_rule_, order)
return tensorprod_rule(order, part=part)
return mv_rule | module function_definition identifier parameters identifier identifier block function_definition identifier parameters identifier default_parameter identifier false default_parameter identifier none block if_statement identifier block expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier keyword_argument identifier identifier identifier expression_statement assignment identifier lambda lambda_parameters identifier default_parameter identifier identifier line_continuation call identifier argument_list identifier keyword_argument identifier identifier return_statement call attribute attribute identifier identifier identifier argument_list identifier identifier return_statement call identifier argument_list identifier keyword_argument identifier identifier return_statement identifier | Convert tensor product rule into a multivariate quadrature generator. |
def update_displayed_information(self):
for source in self.controller.sources:
source_name = source.get_source_name()
if (any(self.graphs_menu.active_sensors[source_name]) or
any(self.summary_menu.active_sensors[source_name])):
source.update()
for graph in self.visible_graphs.values():
graph.update()
for summary in self.visible_summaries.values():
summary.update()
if self.controller.stress_conroller.get_current_mode() != 'Monitor':
self.clock_view.set_text(seconds_to_text(
(timeit.default_timer() - self.controller.stress_start_time))) | module function_definition identifier parameters identifier block for_statement identifier attribute attribute identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement parenthesized_expression boolean_operator call identifier argument_list subscript attribute attribute identifier identifier identifier identifier call identifier argument_list subscript attribute attribute identifier identifier identifier identifier block expression_statement call attribute identifier identifier argument_list for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list if_statement comparison_operator call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute attribute identifier identifier identifier argument_list call identifier argument_list parenthesized_expression binary_operator call attribute identifier identifier argument_list attribute attribute identifier identifier identifier | Update all the graphs that are being displayed |
def _render_table(data, fields=None):
return IPython.core.display.HTML(datalab.utils.commands.HtmlBuilder.render_table(data, fields)) | module function_definition identifier parameters identifier default_parameter identifier none block return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list call attribute attribute attribute attribute identifier identifier identifier identifier identifier argument_list identifier identifier | Helper to render a list of dictionaries as an HTML display object. |
def attach(self, to_linode, config=None):
result = self._client.post('{}/attach'.format(Volume.api_endpoint), model=self,
data={
"linode_id": to_linode.id if issubclass(type(to_linode), Base) else to_linode,
"config": None if not config else config.id if issubclass(type(config), Base) else config,
})
if not 'id' in result:
raise UnexpectedResponseError('Unexpected response when attaching volume!', json=result)
self._populate(result)
return True | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier dictionary pair string string_start string_content string_end conditional_expression attribute identifier identifier call identifier argument_list call identifier argument_list identifier identifier identifier pair string string_start string_content string_end conditional_expression none not_operator identifier conditional_expression attribute identifier identifier call identifier argument_list call identifier argument_list identifier identifier identifier if_statement not_operator comparison_operator string string_start string_content string_end identifier block raise_statement call identifier argument_list string string_start string_content string_end keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list identifier return_statement true | Attaches this Volume to the given Linode |
def eval_string(stri):
'evaluate expressions passed as string'
tokens = shlex.split(stri)
return run_write_read(['plash', 'eval'], '\n'.join(tokens).encode()).decode() | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute call identifier argument_list list string string_start string_content string_end string string_start string_content string_end call attribute call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier identifier argument_list identifier argument_list | evaluate expressions passed as string |
def _generate(self):
u
self._data['key'] = self.key
self._data['value'] = self.value
self._data['host'] = self.host
self._data['clock'] = self.clock | module function_definition identifier parameters identifier block expression_statement identifier expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end attribute identifier identifier | u"""overrided in each modules. |
def prepare_callable(self, fn, partial=False):
notes, keyword_notes = self.get_annotations(fn)
return self.prepare_notes(*notes, __partial=partial, **keyword_notes) | module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list list_splat identifier keyword_argument identifier identifier dictionary_splat identifier | Prepare arguments required to apply function. |
def _getSuperFunc(self, s, func):
return getattr(super(self.cls(), s), func.__name__) | module function_definition identifier parameters identifier identifier identifier block return_statement call identifier argument_list call identifier argument_list call attribute identifier identifier argument_list identifier attribute identifier identifier | Return the the super function. |
def geo_context_from_ref(self, ref):
value = ref.get('value')
if value:
rc = self.doc.geolocs.get(value['@id'])
return rc
return None | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list subscript identifier string string_start string_content string_end return_statement identifier return_statement none | Return a ref context object given a location reference entry. |
def run_epoch(self, epoch_info: EpochInfo, source: 'vel.api.Source'):
epoch_info.on_epoch_begin()
lr = epoch_info.optimizer.param_groups[-1]['lr']
print("|-------- Epoch {:06} Lr={:.6f} ----------|".format(epoch_info.global_epoch_idx, lr))
self.train_epoch(epoch_info, source)
epoch_info.result_accumulator.freeze_results('train')
self.validation_epoch(epoch_info, source)
epoch_info.result_accumulator.freeze_results('val')
epoch_info.on_epoch_end() | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier subscript subscript attribute attribute identifier identifier identifier unary_operator integer string string_start string_content string_end expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list | Run full epoch of learning |
def setupDock(self):
self.dock = QtWidgets.QDockWidget("Classes", self)
self.dock.setWidget(self.tree)
self.dock.setFeatures(QtWidgets.QDockWidget.NoDockWidgetFeatures)
self.addDockWidget(QtCore.Qt.LeftDockWidgetArea, self.dock) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list attribute attribute identifier identifier identifier attribute identifier identifier | Setup empty Dock at startup. |
def visit_loginurl(self):
url = self.config["loginurl"]
if not url:
return
user, password = self.config.get_user_password(url)
session = requests.Session()
response = session.get(url)
cgiuser = self.config["loginuserfield"]
cgipassword = self.config["loginpasswordfield"]
form = formsearch.search_form(response.content, cgiuser, cgipassword,
encoding=response.encoding)
form.data[cgiuser] = user
form.data[cgipassword] = password
for key, value in self.config["loginextrafields"].items():
form.data[key] = value
formurl = urlparse.urljoin(url, form.url)
response = session.post(formurl, data=form.data)
self.cookies = session.cookies
if len(self.cookies) == 0:
raise LinkCheckerError("No cookies set by login URL %s" % url) | module function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end if_statement not_operator identifier block return_statement expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier identifier identifier keyword_argument identifier attribute identifier identifier expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement assignment subscript attribute identifier identifier identifier identifier for_statement pattern_list identifier identifier call attribute subscript attribute identifier identifier string string_start string_content string_end identifier argument_list block expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier if_statement comparison_operator call identifier argument_list attribute identifier identifier integer block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier | Check for a login URL and visit it. |
def record_to_objects(self):
from ambry.orm import SourceTable
bsfile = self.record
failures = set()
for row in bsfile.dict_row_reader:
st = self._dataset.source_table(row['table'])
if st:
st.columns[:] = []
self._dataset.commit()
for row in bsfile.dict_row_reader:
st = self._dataset.source_table(row['table'])
if not st:
st = self._dataset.new_source_table(row['table'])
if 'datatype' not in row:
row['datatype'] = 'unknown'
del row['table']
st.add_column(**row)
if failures:
raise ConfigurationError('Failed to load source schema, missing sources: {} '.format(failures))
self._dataset.commit() | module function_definition identifier parameters identifier block import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list subscript identifier string string_start string_content string_end if_statement identifier block expression_statement assignment subscript attribute identifier identifier slice list expression_statement call attribute attribute identifier identifier identifier argument_list for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list subscript identifier string string_start string_content string_end if_statement not_operator identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list subscript identifier string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end string string_start string_content string_end delete_statement subscript identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list dictionary_splat identifier if_statement identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Write from the stored file data to the source records |
def validate(self, val):
if self.validation:
self.type.validate(val)
if self.custom_validator is not None:
self.custom_validator(val)
return True | module function_definition identifier parameters identifier identifier block if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement comparison_operator attribute identifier identifier none block expression_statement call attribute identifier identifier argument_list identifier return_statement true | Validate values according to the requirement |
def serialized_task(self, task: Task) -> Tuple[str, str]:
return f"{task.hash}.json", task.json | module function_definition identifier parameters identifier typed_parameter identifier type identifier type generic_type identifier type_parameter type identifier type identifier block return_statement expression_list string string_start interpolation attribute identifier identifier string_content string_end attribute identifier identifier | Returns the name of the task definition file and its contents. |
def rgb2gray(img):
T = np.linalg.inv(np.array([
[1.0, 0.956, 0.621],
[1.0, -0.272, -0.647],
[1.0, -1.106, 1.703],
]))
r_c, g_c, b_c = T[0]
r, g, b = np.rollaxis(as_float_image(img), axis=-1)
return r_c * r + g_c * g + b_c * b | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list list list float float float list float unary_operator float unary_operator float list float unary_operator float float expression_statement assignment pattern_list identifier identifier identifier subscript identifier integer expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list call identifier argument_list identifier keyword_argument identifier unary_operator integer return_statement binary_operator binary_operator binary_operator identifier identifier binary_operator identifier identifier binary_operator identifier identifier | Converts an RGB image to grayscale using matlab's algorithm. |
def stream_stdin_lines():
stdin = os.fdopen(sys.stdin.fileno(), 'r', 0)
while True:
line = stdin.readline()
if line:
yield line
else:
break | module function_definition identifier parameters block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end integer while_statement true block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement identifier block expression_statement yield identifier else_clause block break_statement | Generator for unbuffered line reading from STDIN |
def CheckDataStoreAccess(self, token, subjects, requested_access="r"):
if any(not x for x in subjects):
raise ValueError("Subjects list can't contain empty URNs.")
subjects = list(map(rdfvalue.RDFURN, subjects))
return (ValidateAccessAndSubjects(requested_access, subjects) and
ValidateToken(token, subjects) and
(token.supervisor or
self._CheckAccessWithHelpers(token, subjects, requested_access))) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier string string_start string_content string_end block if_statement call identifier generator_expression not_operator identifier for_in_clause identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list call identifier argument_list attribute identifier identifier identifier return_statement parenthesized_expression boolean_operator boolean_operator call identifier argument_list identifier identifier call identifier argument_list identifier identifier parenthesized_expression boolean_operator attribute identifier identifier call attribute identifier identifier argument_list identifier identifier identifier | Allow all access if token and requested access are valid. |
def deactivate_mfa_device(self, user_name, serial_number):
user = self.get_user(user_name)
if serial_number not in user.mfa_devices:
raise IAMNotFoundException(
"Device {0} not found".format(serial_number)
)
user.deactivate_mfa_device(serial_number) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier attribute identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | Deactivate and detach MFA Device from user if device exists. |
def rename(self, name):
r = self._h._http_resource(
method='PUT',
resource=('apps', self.name),
data={'app[name]': name}
)
return r.ok | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier string string_start string_content string_end keyword_argument identifier tuple string string_start string_content string_end attribute identifier identifier keyword_argument identifier dictionary pair string string_start string_content string_end identifier return_statement attribute identifier identifier | Renames app to given name. |
def appt_exists(self, complex: str, house: str, appt: str) -> bool:
try:
self.check_appt(complex, house, appt)
except exceptions.RumetrApptNotFound:
return False
return True | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier identifier identifier except_clause attribute identifier identifier block return_statement false return_statement true | Shortcut to check if appt exists in our database. |
def _get_s16(self, msb, lsb):
buf = struct.pack('>bB', self._get_s8(msb), self._get_u8(lsb))
return int(struct.unpack('>h', buf)[0]) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier return_statement call identifier argument_list subscript call attribute identifier identifier argument_list string string_start string_content string_end identifier integer | Convert 2 bytes into a signed int. |
def write_workflow(self, request, opts, cwd, wftype='cwl'):
workflow_url = request.get("workflow_url")
if workflow_url.startswith('file://'):
os.link(workflow_url[7:], os.path.join(cwd, "wes_workflow." + wftype))
workflow_url = os.path.join(cwd, "wes_workflow." + wftype)
os.link(self.input_json, os.path.join(cwd, "wes_input.json"))
self.input_json = os.path.join(cwd, "wes_input.json")
extra_options = self.sort_toil_options(opts.getoptlist("extra"))
if wftype == 'cwl':
command_args = ['toil-cwl-runner'] + extra_options + [workflow_url, self.input_json]
elif wftype == 'wdl':
command_args = ['toil-wdl-runner'] + extra_options + [workflow_url, self.input_json]
elif wftype == 'py':
command_args = ['python'] + extra_options + [workflow_url]
else:
raise RuntimeError('workflow_type is not "cwl", "wdl", or "py": ' + str(wftype))
return command_args | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list subscript identifier slice integer call attribute attribute identifier identifier identifier argument_list identifier binary_operator string string_start string_content string_end identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier binary_operator binary_operator list string string_start string_content string_end identifier list identifier attribute identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier binary_operator binary_operator list string string_start string_content string_end identifier list identifier attribute identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier binary_operator binary_operator list string string_start string_content string_end identifier list identifier else_clause block raise_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier return_statement identifier | Writes a cwl, wdl, or python file as appropriate from the request dictionary. |
def sigmafilter(data, sigmas, passes):
for n in range(passes):
meandata = np.mean(data[~np.isnan(data)])
sigma = np.std(data[~np.isnan(data)])
data[data > meandata+sigmas*sigma] = np.nan
data[data < meandata-sigmas*sigma] = np.nan
return data | module function_definition identifier parameters identifier identifier identifier block for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier unary_operator call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier unary_operator call attribute identifier identifier argument_list identifier expression_statement assignment subscript identifier comparison_operator identifier binary_operator identifier binary_operator identifier identifier attribute identifier identifier expression_statement assignment subscript identifier comparison_operator identifier binary_operator identifier binary_operator identifier identifier attribute identifier identifier return_statement identifier | Remove datapoints outside of a specified standard deviation range. |
def create_book(self, *args, **kwargs):
return Book(
self._provider_manager,
self._get_provider_session('book_admin_session').create_book(*args, **kwargs),
self._runtime,
self._proxy) | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block return_statement call identifier argument_list attribute identifier identifier call attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier argument_list list_splat identifier dictionary_splat identifier attribute identifier identifier attribute identifier identifier | Pass through to provider BookAdminSession.create_book |
def build_vcf_inversion(x1, x2, genome_2bit):
id1 = "hydra{0}".format(x1.name)
start_coords = sorted([x1.start1, x1.end1, x2.start1, x2.end1])
end_coords = sorted([x1.start2, x1.end2, x2.start2, x2.start2])
start_pos = (start_coords[1] + start_coords[2]) // 2
end_pos = (end_coords[1] + end_coords[2]) // 2
base1 = genome_2bit[x1.chrom1].get(start_pos, start_pos + 1).upper()
info = "SVTYPE=INV;IMPRECISE;CIPOS={cip1},{cip2};CIEND={cie1},{cie2};" \
"END={end};SVLEN={length}".format(cip1=start_pos - start_coords[0],
cip2=start_coords[-1] - start_pos,
cie1=end_pos - end_coords[0],
cie2=end_coords[-1] - end_pos,
end=end_pos,
length=end_pos-start_pos)
return VcfLine(x1.chrom1, start_pos, id1, base1, "<INV>", info) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement assignment identifier call identifier argument_list list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment identifier binary_operator parenthesized_expression binary_operator subscript identifier integer subscript identifier integer integer expression_statement assignment identifier binary_operator parenthesized_expression binary_operator subscript identifier integer subscript identifier integer integer expression_statement assignment identifier call attribute call attribute subscript identifier attribute identifier identifier identifier argument_list identifier binary_operator identifier integer identifier argument_list expression_statement assignment identifier call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list keyword_argument identifier binary_operator identifier subscript identifier integer keyword_argument identifier binary_operator subscript identifier unary_operator integer identifier keyword_argument identifier binary_operator identifier subscript identifier integer keyword_argument identifier binary_operator subscript identifier unary_operator integer identifier keyword_argument identifier identifier keyword_argument identifier binary_operator identifier identifier return_statement call identifier argument_list attribute identifier identifier identifier identifier identifier string string_start string_content string_end identifier | Provide representation of inversion from BedPE breakpoints. |
def html_page(title="Page Title", body=""):
html = "<html>\n<head><title>%s</title></head>\n<body>\n" % (title)
html += "<h1>%s</h1>\n" % (title)
html += body
html += "</body>\n</html>\n"
return html | module function_definition identifier parameters default_parameter identifier string string_start string_content string_end default_parameter identifier string string_start string_end block expression_statement assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence string_end parenthesized_expression identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence string_end parenthesized_expression identifier expression_statement augmented_assignment identifier identifier expression_statement augmented_assignment identifier string string_start string_content escape_sequence escape_sequence string_end return_statement identifier | Create HTML page as string. |
def moveDown(self, entry):
if not entry:
return
entries = self.entries()
next = entries[entries.index(entry) + 1]
entry_q = entry.query()
next_q = next.query()
next.setQuery(entry_q)
entry.setQuery(next_q) | module function_definition identifier parameters identifier identifier block if_statement not_operator identifier block return_statement expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier subscript identifier binary_operator call attribute identifier identifier argument_list identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | Moves the current query down one entry. |
def make_url(self, path, api_root=u'/v2/'):
return urljoin(urljoin(self.url, api_root), path) | module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block return_statement call identifier argument_list call identifier argument_list attribute identifier identifier identifier identifier | Gets a full URL from just path. |
def _scan_radio_channels(self, cradio, start=0, stop=125):
return list(cradio.scan_channels(start, stop, (0xff,))) | module function_definition identifier parameters identifier identifier default_parameter identifier integer default_parameter identifier integer block return_statement call identifier argument_list call attribute identifier identifier argument_list identifier identifier tuple integer | Scan for Crazyflies between the supplied channels. |
def save(self, filePath) :
self.filename = filePath
f = open(filePath, 'w')
f.write(self.toStr())
f.flush()
f.close() | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list | save the CSV to a file |
def cache_finite_samples(f):
cache = {}
def wrap(*args):
key = FRAME_RATE, args
if key not in cache:
cache[key] = [sample for sample in f(*args)]
return (sample for sample in cache[key])
return wrap | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary function_definition identifier parameters list_splat_pattern identifier block expression_statement assignment identifier expression_list identifier identifier if_statement comparison_operator identifier identifier block expression_statement assignment subscript identifier identifier list_comprehension identifier for_in_clause identifier call identifier argument_list list_splat identifier return_statement generator_expression identifier for_in_clause identifier subscript identifier identifier return_statement identifier | Decorator to cache audio samples produced by the wrapped generator. |
def putty_ignore_code(options, code):
reporter, line_number, offset, text, check = get_reporter_state()
try:
line = reporter.lines[line_number - 1]
except IndexError:
line = ''
options.ignore = options._orig_ignore
options.select = options._orig_select
for rule in options.putty_ignore:
if rule.match(reporter.filename, line, list(reporter.counters) + [code]):
if rule._append_codes:
options.ignore = options.ignore + rule.codes
else:
options.ignore = rule.codes
for rule in options.putty_select:
if rule.match(reporter.filename, line, list(reporter.counters) + [code]):
if rule._append_codes:
options.select = options.select + rule.codes
else:
options.select = rule.codes
return ignore_code(options, code) | module function_definition identifier parameters identifier identifier block expression_statement assignment pattern_list identifier identifier identifier identifier identifier call identifier argument_list try_statement block expression_statement assignment identifier subscript attribute identifier identifier binary_operator identifier integer except_clause identifier block expression_statement assignment identifier string string_start string_end expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier for_statement identifier attribute identifier identifier block if_statement call attribute identifier identifier argument_list attribute identifier identifier identifier binary_operator call identifier argument_list attribute identifier identifier list identifier block if_statement attribute identifier identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier else_clause block expression_statement assignment attribute identifier identifier attribute identifier identifier for_statement identifier attribute identifier identifier block if_statement call attribute identifier identifier argument_list attribute identifier identifier identifier binary_operator call identifier argument_list attribute identifier identifier list identifier block if_statement attribute identifier identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier else_clause block expression_statement assignment attribute identifier identifier attribute identifier identifier return_statement call identifier argument_list identifier identifier | Implement pep8 'ignore_code' hook. |
def replace(self, hour=None, minute=None, second=None, microsecond=None,
tzinfo=True):
if hour is None:
hour = self.hour
if minute is None:
minute = self.minute
if second is None:
second = self.second
if microsecond is None:
microsecond = self.microsecond
if tzinfo is True:
tzinfo = self.tzinfo
_check_time_fields(hour, minute, second, microsecond)
_check_tzinfo_arg(tzinfo)
return time(hour, minute, second, microsecond, tzinfo) | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier true block if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier true block expression_statement assignment identifier attribute identifier identifier expression_statement call identifier argument_list identifier identifier identifier identifier expression_statement call identifier argument_list identifier return_statement call identifier argument_list identifier identifier identifier identifier identifier | Return a new time with new values for the specified fields. |
def info(ctx):
controller = ctx.obj['controller']
if controller.is_fips:
click.echo('FIPS Approved Mode: {}'.format(
'Yes' if controller.is_in_fips_mode else 'No'))
else:
if controller.has_pin:
try:
click.echo(
'PIN is set, with {} tries left.'.format(
controller.get_pin_retries()))
except CtapError as e:
if e.code == CtapError.ERR.PIN_BLOCKED:
click.echo('PIN is blocked.')
else:
click.echo('PIN is not set.') | module function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list conditional_expression string string_start string_content string_end attribute identifier identifier string string_start string_content string_end else_clause block if_statement attribute identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block if_statement comparison_operator attribute identifier identifier attribute attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end else_clause block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end | Display status of FIDO2 application. |
def makeNodeID(Rec, ndType, extras = None):
if ndType == 'raw':
recID = Rec
else:
recID = Rec.get(ndType)
if recID is None:
pass
elif isinstance(recID, list):
recID = tuple(recID)
else:
recID = recID
extraDict = {}
if extras:
for tag in extras:
if tag == "raw":
extraDict['Tag'] = Rec
else:
extraDict['Tag'] = Rec.get(tag)
return recID, extraDict | module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier none block pass_statement elif_clause call identifier argument_list identifier identifier block expression_statement assignment identifier call identifier argument_list identifier else_clause block expression_statement assignment identifier identifier expression_statement assignment identifier dictionary if_statement identifier block for_statement identifier identifier block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment subscript identifier string string_start string_content string_end identifier else_clause block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier return_statement expression_list identifier identifier | Helper to make a node ID, extras is currently not used |
def build(cls, node):
if not isinstance(node, gast.FunctionDef):
raise ValueError
namer = cls()
namer.names.update(get_names(node))
return namer | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block raise_statement identifier expression_statement assignment identifier call identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list call identifier argument_list identifier return_statement identifier | Construct a namer object for a given function scope. |
def btc_is_p2sh_script( script_hex ):
if script_hex.startswith("a914") and script_hex.endswith("87") and len(script_hex) == 46:
return True
else:
return False | module function_definition identifier parameters identifier block if_statement boolean_operator boolean_operator call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end comparison_operator call identifier argument_list identifier integer block return_statement true else_clause block return_statement false | Is the given scriptpubkey a p2sh script? |
def register_commands(self):
for command in self._entry_points[self.COMMANDS_ENTRY_POINT].values():
command.load() | module function_definition identifier parameters identifier block for_statement identifier call attribute subscript attribute identifier identifier attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list | Load entry points for custom commands. |
def initDeviceScan(self):
self.__isIphone = self.detectIphoneOrIpod()
self.__isAndroidPhone = self.detectAndroidPhone()
self.__isTierTablet = self.detectTierTablet()
self.__isTierIphone = self.detectTierIphone()
self.__isTierRichCss = self.detectTierRichCss()
self.__isTierGenericMobile = self.detectTierOtherPhones() | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list | Initialize Key Stored Values. |
def major_rise_per_monomer(self):
return numpy.cos(numpy.deg2rad(self.curve.alpha)) * self.minor_rise_per_residue | module function_definition identifier parameters identifier block return_statement binary_operator call attribute identifier identifier argument_list call attribute identifier identifier argument_list attribute attribute identifier identifier identifier attribute identifier identifier | Rise along super-helical axis per monomer. |
def create(self, model):
signals.pre_create.send(model.__class__, model=model)
signals.pre_save.send(model.__class__, model=model)
param = self.to_pg(model)
query =
query = query.format(
cols=self.field_cols(model),
dirty_cols=self.dirty_cols(model),
dirty_vals=self.dirty_vals(model),
table=model.rtype,
)
result = self.query(query, param=param)
signals.post_create.send(model.__class__, model=model)
signals.post_save.send(model.__class__, model=model)
return model.merge(result[0], clean=True) | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier assignment identifier call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list identifier keyword_argument identifier call attribute identifier identifier argument_list identifier keyword_argument identifier call attribute identifier identifier argument_list identifier keyword_argument identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier return_statement call attribute identifier identifier argument_list subscript identifier integer keyword_argument identifier true | Given a model object instance create it |
def canFetchMore(self, parentIndex):
parentItem = self.getItem(parentIndex)
if not parentItem:
return False
return parentItem.canFetchChildren() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block return_statement false return_statement call attribute identifier identifier argument_list | Returns true if there is more data available for parent; otherwise returns false. |
def catch_all(path):
return (dict(error='Invalid URL: /{}'.format(path),
links=dict(root='{}{}'.format(request.url_root, PREFIX[1:]))),
HTTPStatus.NOT_FOUND) | module function_definition identifier parameters identifier block return_statement tuple call identifier argument_list keyword_argument identifier call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier call identifier argument_list keyword_argument identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier subscript identifier slice integer attribute identifier identifier | Catch all path - return a JSON 404 |
def to_unicode(obj, encoding='utf-8'):
if isinstance(obj, string_types) or isinstance(obj, binary_type):
if not isinstance(obj, text_type):
obj = text_type(obj, encoding)
return obj | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block if_statement boolean_operator call identifier argument_list identifier identifier call identifier argument_list identifier identifier block if_statement not_operator call identifier argument_list identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier return_statement identifier | Convert string to unicode string |
def display_with_id(self, obj, display_id, update=False):
ip = get_ipython()
if hasattr(ip, "kernel"):
data, md = ip.display_formatter.format(obj)
content = {
'data': data,
'metadata': md,
'transient': {'display_id': display_id},
}
msg_type = 'update_display_data' if update else 'display_data'
ip.kernel.session.send(ip.kernel.iopub_socket, msg_type, content, parent=ip.parent_header)
else:
display(obj) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list if_statement call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end dictionary pair string string_start string_content string_end identifier expression_statement assignment identifier conditional_expression string string_start string_content string_end identifier string string_start string_content string_end expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list attribute attribute identifier identifier identifier identifier identifier keyword_argument identifier attribute identifier identifier else_clause block expression_statement call identifier argument_list identifier | Create a new display with an id |
def register_entity(self, entity_config):
if not issubclass(entity_config, EntityConfig):
raise ValueError('Must register entity config class of subclass EntityConfig')
if entity_config.queryset is None:
raise ValueError('Entity config must define queryset')
model = entity_config.queryset.model
self._entity_registry[model] = entity_config()
for watching_model, entity_model_getter in entity_config.watching:
self._entity_watching[watching_model].append((model, entity_model_getter)) | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end if_statement comparison_operator attribute identifier identifier none block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment subscript attribute identifier identifier identifier call identifier argument_list for_statement pattern_list identifier identifier attribute identifier identifier block expression_statement call attribute subscript attribute identifier identifier identifier identifier argument_list tuple identifier identifier | Registers an entity config |
def flushall(args):
cluster = Cluster.from_node(ClusterNode.from_uri(args.cluster))
for node in cluster.masters:
node.flushall() | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list attribute identifier identifier for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list | Execute flushall in all cluster nodes. |
def calculate_bbox_area(bbox, rows, cols):
bbox = denormalize_bbox(bbox, rows, cols)
x_min, y_min, x_max, y_max = bbox[:4]
area = (x_max - x_min) * (y_max - y_min)
return area | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier identifier expression_statement assignment pattern_list identifier identifier identifier identifier subscript identifier slice integer expression_statement assignment identifier binary_operator parenthesized_expression binary_operator identifier identifier parenthesized_expression binary_operator identifier identifier return_statement identifier | Calculate the area of a bounding box in pixels. |
def add(self, component):
old = self.get_component(component.id)
if old:
old.releases.extend(component.releases)
return
self.components[component.id] = component | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier if_statement identifier block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement expression_statement assignment subscript attribute identifier identifier attribute identifier identifier identifier | Add component to the store |
def getUserSignupDate(self):
userinfo = self.getUserInfo()
timestamp = int(float(userinfo["signupTimeSec"]))
return time.strftime("%m/%d/%Y %H:%M", time.gmtime(timestamp)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list call identifier argument_list subscript identifier string string_start string_content string_end return_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list identifier | Returns the human readable date of when the user signed up for google reader. |
def _get_balance(self):
response = self.session.get(self.balance_url, verify=False)
soup = BeautifulSoup(response.text, 'html.parser')
first_line = soup.select(
"table.data tr:nth-of-type(2)")[0].text.strip().split('\n')
total, today = first_line[-2:]
logging.info('%-26sTotal:%-8s', today, total)
return '\n'.join([u"Today: {0}".format(today),
"Total: {0}".format(total)]) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier keyword_argument identifier false expression_statement assignment identifier call identifier argument_list attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call attribute call attribute attribute subscript call attribute identifier identifier argument_list string string_start string_content string_end integer identifier identifier argument_list identifier argument_list string string_start string_content escape_sequence string_end expression_statement assignment pattern_list identifier identifier subscript identifier slice unary_operator integer expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier return_statement call attribute string string_start string_content escape_sequence string_end identifier argument_list list call attribute string string_start string_content string_end identifier argument_list identifier call attribute string string_start string_content string_end identifier argument_list identifier | Get to know how much you totally have and how much you get today. |
def wait_till_stopped(self, conf, container_id, timeout=10, message=None, waiting=True):
stopped = False
inspection = None
for _ in until(timeout=timeout, action=message):
try:
inspection = conf.harpoon.docker_api.inspect_container(container_id)
if not isinstance(inspection, dict):
log.error("Weird response from inspecting the container\tresponse=%s", inspection)
else:
if not inspection["State"]["Running"]:
stopped = True
conf.container_id = None
break
else:
break
except (socket.timeout, ValueError):
log.warning("Failed to inspect the container\tcontainer_id=%s", container_id)
except DockerAPIError as error:
if error.response.status_code != 404:
raise
else:
break
if not inspection:
log.warning("Failed to inspect the container!")
stopped = True
exit_code = 1
else:
exit_code = inspection["State"]["ExitCode"]
return stopped, exit_code | module function_definition identifier parameters identifier identifier identifier default_parameter identifier integer default_parameter identifier none default_parameter identifier true block expression_statement assignment identifier false expression_statement assignment identifier none for_statement identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier block try_statement block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list identifier if_statement not_operator call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end identifier else_clause block if_statement not_operator subscript subscript identifier string string_start string_content string_end string string_start string_content string_end block expression_statement assignment identifier true expression_statement assignment attribute identifier identifier none break_statement else_clause block break_statement except_clause tuple attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end identifier except_clause as_pattern identifier as_pattern_target identifier block if_statement comparison_operator attribute attribute identifier identifier identifier integer block raise_statement else_clause block break_statement if_statement not_operator identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier true expression_statement assignment identifier integer else_clause block expression_statement assignment identifier subscript subscript identifier string string_start string_content string_end string string_start string_content string_end return_statement expression_list identifier identifier | Wait till a container is stopped |
def Read(self, length):
result = b""
length = int(length)
length = min(length, self.size - self.offset)
while length > 0:
data = self._ReadPartial(length)
if not data:
break
length -= len(data)
result += data
return result | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier string string_start string_end expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier binary_operator attribute identifier identifier attribute identifier identifier while_statement comparison_operator identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block break_statement expression_statement augmented_assignment identifier call identifier argument_list identifier expression_statement augmented_assignment identifier identifier return_statement identifier | Read a block of data from the file. |
def allow_relation(self, obj1, obj2, **hints):
if obj1._meta.app_label != 'oldimporter' and obj2._meta.app_label != 'oldimporter':
return True
return None | module function_definition identifier parameters identifier identifier identifier dictionary_splat_pattern identifier block if_statement boolean_operator comparison_operator attribute attribute identifier identifier identifier string string_start string_content string_end comparison_operator attribute attribute identifier identifier identifier string string_start string_content string_end block return_statement true return_statement none | Relations between objects are allowed between nodeshot2 objects only |
def sign(self, data):
data = signing.b64_encode(data).decode()
return self.signer.sign(data) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier identifier argument_list return_statement call attribute attribute identifier identifier identifier argument_list identifier | Create an URL-safe, signed token from ``data``. |
def process_target(self):
if isinstance(self.target, str):
self.target = self.target.replace("'", "\'").replace('"', "\'")
return "\"{target}\"".format(target=self.target)
return self.target | module function_definition identifier parameters identifier block if_statement call identifier argument_list attribute identifier identifier identifier block expression_statement assignment attribute identifier identifier call attribute call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end string string_start string_content escape_sequence string_end identifier argument_list string string_start string_content string_end string string_start string_content escape_sequence string_end return_statement call attribute string string_start string_content escape_sequence escape_sequence string_end identifier argument_list keyword_argument identifier attribute identifier identifier return_statement attribute identifier identifier | Return target with transformations, if any |
def _compute_mean(self, C, g, mag, hypo_depth, rrup, vs30, pga_rock, imt):
if hypo_depth > 100:
hypo_depth = 100
delta = 0.00724 * 10 ** (0.507 * mag)
R = np.sqrt(rrup ** 2 + delta ** 2)
s_amp = self._compute_soil_amplification(C, vs30, pga_rock, imt)
mean = (
C['c1'] + C['c2'] * mag +
C['c3'] * hypo_depth +
C['c4'] * R -
g * np.log10(R) +
s_amp
)
return mean | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier identifier identifier block if_statement comparison_operator identifier integer block expression_statement assignment identifier integer expression_statement assignment identifier binary_operator float binary_operator integer parenthesized_expression binary_operator float identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator binary_operator identifier integer binary_operator identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier identifier expression_statement assignment identifier parenthesized_expression binary_operator binary_operator binary_operator binary_operator binary_operator subscript identifier string string_start string_content string_end binary_operator subscript identifier string string_start string_content string_end identifier binary_operator subscript identifier string string_start string_content string_end identifier binary_operator subscript identifier string string_start string_content string_end identifier binary_operator identifier call attribute identifier identifier argument_list identifier identifier return_statement identifier | Compute mean according to equation 1, page 1706. |
def add_tag_to_job(user, job_id):
job = v1_utils.verify_existence_and_get(job_id, _TABLE)
if not user.is_in_team(job['team_id']):
raise dci_exc.Unauthorized()
values = {
'job_id': job_id
}
job_tagged = tags.add_tag_to_resource(values, models.JOIN_JOBS_TAGS)
return flask.Response(json.dumps(job_tagged), 201,
content_type='application/json') | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier if_statement not_operator call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end block raise_statement call attribute identifier identifier argument_list expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier return_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier integer keyword_argument identifier string string_start string_content string_end | Add a tag to a job. |
def _make_scaled_srcmap(self):
self.logger.info('Computing scaled source map.')
bexp0 = fits.open(self.files['bexpmap_roi'])
bexp1 = fits.open(self.config['gtlike']['bexpmap'])
srcmap = fits.open(self.config['gtlike']['srcmap'])
if bexp0[0].data.shape != bexp1[0].data.shape:
raise Exception('Wrong shape for input exposure map file.')
bexp_ratio = bexp0[0].data / bexp1[0].data
self.logger.info(
'Min/Med/Max exposure correction: %f %f %f' % (np.min(bexp_ratio),
np.median(
bexp_ratio),
np.max(bexp_ratio)))
for hdu in srcmap[1:]:
if hdu.name == 'GTI':
continue
if hdu.name == 'EBOUNDS':
continue
hdu.data *= bexp_ratio
srcmap.writeto(self.files['srcmap'], overwrite=True) | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end if_statement comparison_operator attribute attribute subscript identifier integer identifier identifier attribute attribute subscript identifier integer identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier binary_operator attribute subscript identifier integer identifier attribute subscript identifier integer identifier expression_statement call attribute attribute identifier identifier identifier argument_list binary_operator string string_start string_content string_end tuple call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier for_statement identifier subscript identifier slice integer block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block continue_statement if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block continue_statement expression_statement augmented_assignment attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list subscript attribute identifier identifier string string_start string_content string_end keyword_argument identifier true | Make an exposure cube with the same binning as the counts map. |
def path_selection_changed(self):
idx = self.currentIndex()
if idx == SELECT_OTHER:
external_path = self.select_directory()
if len(external_path) > 0:
self.add_external_path(external_path)
self.setCurrentIndex(self.count() - 1)
else:
self.setCurrentIndex(CWD)
elif idx == CLEAR_LIST:
reply = QMessageBox.question(
self, _("Clear other directories"),
_("Do you want to clear the list of other directories?"),
QMessageBox.Yes | QMessageBox.No)
if reply == QMessageBox.Yes:
self.clear_external_paths()
self.setCurrentIndex(CWD)
elif idx >= EXTERNAL_PATHS:
self.external_path = to_text_string(self.itemText(idx)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator call identifier argument_list identifier integer block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list binary_operator call attribute identifier identifier argument_list integer else_clause block expression_statement call attribute identifier identifier argument_list identifier elif_clause comparison_operator identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier call identifier argument_list string string_start string_content string_end call identifier argument_list string string_start string_content string_end binary_operator attribute identifier identifier attribute identifier identifier if_statement comparison_operator identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier elif_clause comparison_operator identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list call attribute identifier identifier argument_list identifier | Handles when the current index of the combobox changes. |
def _expand_directories(paths):
for path in paths:
path_ = Path(path)
if path_.is_dir():
for expanded in path_.rglob('*'):
yield str(expanded)
else:
yield path | module function_definition identifier parameters identifier block for_statement identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement yield call identifier argument_list identifier else_clause block expression_statement yield identifier | Expand directory with all files it contains. |
def eat_length(self, length):
pos = self.pos
if self.eos or pos + length > self.length:
return None
col = self.col
row = self.row
for char in self.string[pos:pos + length]:
col += 1
pos += 1
if char == '\n':
col = 0
row += 1
self.pos = pos
self.col = col
self.row = row
if not self.has_space():
self.eos = 1 | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement boolean_operator attribute identifier identifier comparison_operator binary_operator identifier identifier attribute identifier identifier block return_statement none expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier for_statement identifier subscript attribute identifier identifier slice identifier binary_operator identifier identifier block expression_statement augmented_assignment identifier integer expression_statement augmented_assignment identifier integer if_statement comparison_operator identifier string string_start string_content escape_sequence string_end block expression_statement assignment identifier integer expression_statement augmented_assignment identifier integer expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier if_statement not_operator call attribute identifier identifier argument_list block expression_statement assignment attribute identifier identifier integer | Move current position forward by length and sets eos if needed. |
def delete(self) :
if not self.URL :
raise CreationError("Please save user first", None, None)
r = self.connection.session.delete(self.URL)
if r.status_code < 200 or r.status_code > 202 :
raise DeletionError("Unable to delete user, url: %s, status: %s" %(r.url, r.status_code), r.content )
self.URL = None | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end none none expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier if_statement boolean_operator comparison_operator attribute identifier identifier integer comparison_operator attribute identifier identifier integer block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier none | Permanently remove the user |
def purge():
all_hashes = read_all()
used_hashes = read_used()
for kind, hashes in used_hashes.items():
hashes = set(hashes)
to_remove = set(all_hashes[kind]).difference(hashes)
delete_from_directory_by_hashes(kind, to_remove)
reset_used()
write_out() | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call identifier argument_list for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute call identifier argument_list subscript identifier identifier identifier argument_list identifier expression_statement call identifier argument_list identifier identifier expression_statement call identifier argument_list expression_statement call identifier argument_list | Deletes all the cached files since the last call to reset_used that have not been used. |
def place_center(window, width=None, height=None):
screenGeometry = QApplication.desktop().screenGeometry()
w, h = window.width(), window.height()
if width is not None or height is not None:
w = width if width is not None else w
h = height if height is not None else h
window.setGeometry(0, 0, w, h)
x = (screenGeometry.width() - w) / 2
y = (screenGeometry.height() - h) / 2
window.move(x, y) | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list expression_statement assignment pattern_list identifier identifier expression_list call attribute identifier identifier argument_list call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator identifier none comparison_operator identifier none block expression_statement assignment identifier conditional_expression identifier comparison_operator identifier none identifier expression_statement assignment identifier conditional_expression identifier comparison_operator identifier none identifier expression_statement call attribute identifier identifier argument_list integer integer identifier identifier expression_statement assignment identifier binary_operator parenthesized_expression binary_operator call attribute identifier identifier argument_list identifier integer expression_statement assignment identifier binary_operator parenthesized_expression binary_operator call attribute identifier identifier argument_list identifier integer expression_statement call attribute identifier identifier argument_list identifier identifier | Places window in the center of the screen. |
def start_task(self, func):
task = self.loop.create_task(func(self))
self._started_tasks.append(task)
def done_callback(done_task):
self._started_tasks.remove(done_task)
task.add_done_callback(done_callback)
return task | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Start up a task |
def list(self, engine):
engine = self._get_engine(engine)
vms = []
try:
for vm in (yield from engine.list()):
vms.append({"vmname": vm["vmname"]})
except GNS3VMError as e:
if self.enable:
raise e
return vms | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier list try_statement block for_statement identifier parenthesized_expression yield call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list dictionary pair string string_start string_content string_end subscript identifier string string_start string_content string_end except_clause as_pattern identifier as_pattern_target identifier block if_statement attribute identifier identifier block raise_statement identifier return_statement identifier | List VMS for an engine |
def inv_posdef(mat):
chol = np.linalg.cholesky(mat)
ident = np.eye(mat.shape[0])
res = solve_triangular(chol, ident, lower=True, overwrite_b=True)
return np.transpose(res).dot(res) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list subscript attribute identifier identifier integer expression_statement assignment identifier call identifier argument_list identifier identifier keyword_argument identifier true keyword_argument identifier true return_statement call attribute call attribute identifier identifier argument_list identifier identifier argument_list identifier | Stable inverse of a positive definite matrix. |
def initialize_directories(self):
makedirs(self.config.source_index)
makedirs(self.config.eggs_cache) | module function_definition identifier parameters identifier block expression_statement call identifier argument_list attribute attribute identifier identifier identifier expression_statement call identifier argument_list attribute attribute identifier identifier identifier | Automatically create local directories required by pip-accel. |
def resp_set_hostfirmware(self, resp):
if resp:
self.host_firmware_version = float(str(str(resp.version >> 16) + "." + str(resp.version & 0xff)))
self.host_firmware_build_timestamp = resp.build | module function_definition identifier parameters identifier identifier block if_statement identifier block expression_statement assignment attribute identifier identifier call identifier argument_list call identifier argument_list binary_operator binary_operator call identifier argument_list binary_operator attribute identifier identifier integer string string_start string_content string_end call identifier argument_list binary_operator attribute identifier identifier integer expression_statement assignment attribute identifier identifier attribute identifier identifier | Default callback for get_hostfirmware |
def _load_url(url):
try:
response = requests.get(url)
return BytesIO(response.content)
except IOError as ex:
parser.error("{url} could not be loaded remotely! ({ex})".format(url=url, ex=ex)) | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call identifier argument_list attribute identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier | Loads a URL resource from a remote server |
def _extract_object_params(self, name):
params = self.request.query_params.lists()
params_map = {}
prefix = name[:-1]
offset = len(prefix)
for name, value in params:
if name.startswith(prefix):
if name.endswith('}'):
name = name[offset:-1]
elif name.endswith('}[]'):
name = name[offset:-3]
else:
raise exceptions.ParseError(
'"%s" is not a well-formed filter key.' % name
)
else:
continue
params_map[name] = value
return params_map | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list expression_statement assignment identifier dictionary expression_statement assignment identifier subscript identifier slice unary_operator integer expression_statement assignment identifier call identifier argument_list identifier for_statement pattern_list identifier identifier identifier block if_statement call attribute identifier identifier argument_list identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier subscript identifier slice identifier unary_operator integer elif_clause call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier subscript identifier slice identifier unary_operator integer else_clause block raise_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier else_clause block continue_statement expression_statement assignment subscript identifier identifier identifier return_statement identifier | Extract object params, return as dict |
def update(
self, request, pk=None, parent_lookup_seedteam=None,
parent_lookup_seedteam__organization=None):
user = get_object_or_404(User, pk=pk)
team = self.check_team_permissions(
request, parent_lookup_seedteam,
parent_lookup_seedteam__organization)
team.users.add(user)
return Response(status=status.HTTP_204_NO_CONTENT) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier return_statement call identifier argument_list keyword_argument identifier attribute identifier identifier | Add a user to a team. |
def check_permissions(self, request):
obj = (
hasattr(self, 'get_controlled_object') and self.get_controlled_object() or
hasattr(self, 'get_object') and self.get_object() or getattr(self, 'object', None)
)
user = request.user
perms = self.get_required_permissions(self)
has_permissions = self.perform_permissions_check(user, obj, perms)
if not has_permissions and not user.is_authenticated:
return HttpResponseRedirect('{}?{}={}'.format(
resolve_url(self.login_url),
self.redirect_field_name,
urlquote(request.get_full_path())
))
elif not has_permissions:
raise PermissionDenied | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier parenthesized_expression boolean_operator boolean_operator boolean_operator call identifier argument_list identifier string string_start string_content string_end call attribute identifier identifier argument_list boolean_operator call identifier argument_list identifier string string_start string_content string_end call attribute identifier identifier argument_list call identifier argument_list identifier string string_start string_content string_end none expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier if_statement boolean_operator not_operator identifier not_operator attribute identifier identifier block return_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list call identifier argument_list attribute identifier identifier attribute identifier identifier call identifier argument_list call attribute identifier identifier argument_list elif_clause not_operator identifier block raise_statement identifier | Retrieves the controlled object and perform the permissions check. |
def supervise(args):
project = args.project
workspace = args.workspace
namespace = args.namespace
workflow = args.workflow
sample_sets = args.sample_sets
recovery_file = args.json_checkpoint
if not sample_sets:
r = fapi.get_entities(args.project, args.workspace, "sample_set")
fapi._check_response_code(r, 200)
sample_sets = [s['name'] for s in r.json()]
message = "Sample Sets ({}):\n\t".format(len(sample_sets)) + \
"\n\t".join(sample_sets)
prompt = "\nLaunch workflow in " + project + "/" + workspace + \
" on these sample sets? [Y\\n]: "
if not args.yes and not _confirm_prompt(message, prompt):
return
return supervisor.supervise(project, workspace, namespace, workflow,
sample_sets, recovery_file) | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier if_statement not_operator identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier integer expression_statement assignment identifier list_comprehension subscript identifier string string_start string_content string_end for_in_clause identifier call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator call attribute string string_start string_content escape_sequence escape_sequence string_end identifier argument_list call identifier argument_list identifier call attribute string string_start string_content escape_sequence escape_sequence string_end identifier argument_list identifier expression_statement assignment identifier binary_operator binary_operator binary_operator binary_operator string string_start string_content escape_sequence string_end identifier string string_start string_content string_end identifier string string_start string_content escape_sequence string_end if_statement boolean_operator not_operator attribute identifier identifier not_operator call identifier argument_list identifier identifier block return_statement return_statement call attribute identifier identifier argument_list identifier identifier identifier identifier identifier identifier | Run legacy, Firehose-style workflow of workflows |
def spin_gen_op(oper, gauge):
slaves = len(gauge)
oper['O'] = np.array([spin_gen(slaves, i, c) for i, c in enumerate(gauge)])
oper['O_d'] = np.transpose(oper['O'], (0, 2, 1))
oper['O_dO'] = np.einsum('...ij,...jk->...ik', oper['O_d'], oper['O'])
oper['Sfliphop'] = spinflipandhop(slaves) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list list_comprehension call identifier argument_list identifier identifier identifier for_in_clause pattern_list identifier identifier call identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end tuple integer integer integer expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end call identifier argument_list identifier | Generates the generic spin matrices for the system |
def of(cls, *documents: BioCDocument):
if len(documents) <= 0:
raise ValueError("There has to be at least one document.")
c = BioCCollection()
for document in documents:
if document is None:
raise ValueError('Document is None')
c.add_document(document)
return c | module function_definition identifier parameters identifier typed_parameter list_splat_pattern identifier type identifier block if_statement comparison_operator call identifier argument_list identifier integer block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block if_statement comparison_operator identifier none block raise_statement call identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Returns a collection documents |
def emptyTrash(self):
key = '/library/sections/%s/emptyTrash' % self.key
self._server.query(key, method=self._server._session.put) | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier keyword_argument identifier attribute attribute attribute identifier identifier identifier identifier | If a section has items in the Trash, use this option to empty the Trash. |
def _update_project(self, project_name):
project = self.projectdb.get(project_name)
if not project:
return None
return self._load_project(project) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier if_statement not_operator identifier block return_statement none return_statement call attribute identifier identifier argument_list identifier | Update one project from database |
def resume(self):
log.info("Resuming cluster `%s` ...", self.name)
failed = self._resume_all_nodes()
for node in self.get_all_nodes():
node.update_ips()
self._gather_node_ip_addresses(
self.get_all_nodes(), self.start_timeout, self.ssh_probe_timeout)
self.repository.save_or_update(self)
if failed:
log.warning(
"Not all cluster nodes have been successfully "
"restarted. Check error messages above and consider "
"re-running `elasticluster resume %s` if "
"necessary.", self.name)
return
if not self._setup_provider.resume_cluster(self):
log.warning("Elasticluster was not able to guarantee that the "
"cluster restarted correctly - check the errors "
"above and check your config.") | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list for_statement identifier call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end attribute identifier identifier return_statement if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end | Resume all paused VMs in this cluster. |
def make_posts(generator, metadata, url):
reddit = generator.get_reddit()
title = lxml.html.fromstring(metadata['title']).text_content()
if reddit is None:
log.info("Reddit plugin not enabled")
return
if metadata.get('status') == "draft":
log.debug("ignoring draft %s" % title)
return
collection = generator.settings['REDDIT_POSTER_COLLECT_SUB']
sub = reddit.subreddit(collection)
results = sub.search(title)
if len([result for result in results]) > 0:
log.debug("ignoring %s because it is already on sub %s " % (title, collection))
return
try:
submission = sub.submit(title, url=url, resubmit=False)
cross_post(reddit, submission, metadata.get('subreddit'))
except praw.exceptions.APIException as e:
log.error("got an api exception: %s", e)
except AssertionError as e:
log.error("Received an assertion error %s", e) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list subscript identifier string string_start string_content string_end identifier argument_list if_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier return_statement expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator call identifier argument_list list_comprehension identifier for_in_clause identifier identifier integer block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier return_statement try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier false expression_statement call identifier argument_list identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end except_clause as_pattern attribute attribute identifier identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier | Make posts on reddit if it's not a draft, on whatever subs are specified |
def send_direct_message(self, text, user=None, delegate=None, screen_name=None, user_id=None, params={}):
params = params.copy()
if user is not None:
params['user'] = user
if user_id is not None:
params['user_id'] = user_id
if screen_name is not None:
params['screen_name'] = screen_name
params['text'] = text
parser = txml.Direct(delegate)
return self.__postPage('/direct_messages/new.xml', parser, params) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier dictionary block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier none block expression_statement assignment subscript identifier string string_start string_content string_end identifier if_statement comparison_operator identifier none block expression_statement assignment subscript identifier string string_start string_content string_end identifier if_statement comparison_operator identifier none block expression_statement assignment subscript identifier string string_start string_content string_end identifier expression_statement assignment subscript identifier string string_start string_content string_end identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier | Send a direct message |
def copy_meta_from(self, ido):
self._active_scalar_info = ido.active_scalar_info
self._active_vectors_info = ido.active_vectors_info
if hasattr(ido, '_textures'):
self._textures = ido._textures | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier if_statement call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier attribute identifier identifier | Copies vtki meta data onto this object from another object |
def deconstruct(self):
name, path, args, kwargs = super(AssetsFileField, self).deconstruct()
kwargs['denormalize'] = False
return name, path, args, kwargs | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier identifier call attribute call identifier argument_list identifier identifier identifier argument_list expression_statement assignment subscript identifier string string_start string_content string_end false return_statement expression_list identifier identifier identifier identifier | Denormalize is always false migrations |
def load_plugins(self, plugins_package):
try:
plugin_dir = find_spec(plugins_package).submodule_search_locations[0]
except ImportError:
logger.error(
"Could not load plugins package '%(pkg)s'", {'pkg': plugins_package}
)
return
for module_path in self._get_plugin_module_paths(plugin_dir):
spec = find_spec('{}.{}'.format(plugins_package, module_path))
m = module_from_spec(spec)
spec.loader.exec_module(m)
classes = inspect.getmembers(m, predicate=inspect.isclass)
for _, klass in classes:
if klass.__module__ != spec.name:
continue
if not klass.__name__.endswith('Plugin'):
continue
instance = klass()
if self._is_plugin_ok(instance):
self.plugins.add(instance) | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment identifier subscript attribute call identifier argument_list identifier identifier integer except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end dictionary pair string string_start string_content string_end identifier return_statement for_statement identifier call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier attribute identifier identifier for_statement pattern_list identifier identifier identifier block if_statement comparison_operator attribute identifier identifier attribute identifier identifier block continue_statement if_statement not_operator call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end block continue_statement expression_statement assignment identifier call identifier argument_list if_statement call attribute identifier identifier argument_list identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Load plugins from `plugins_package` module. |
def throw_random( lengths, mask ):
saved = None
for i in range( maxtries ):
try:
return throw_random_bits( lengths, mask )
except MaxtriesException as e:
saved = e
continue
raise e | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier none for_statement identifier call identifier argument_list identifier block try_statement block return_statement call identifier argument_list identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement assignment identifier identifier continue_statement raise_statement identifier | Try multiple times to run 'throw_random' |
def text_to_title(value):
title = None
if not value:
return title
words = value.split(" ")
keep_words = []
for word in words:
if word.endswith(".") or word.endswith(":"):
keep_words.append(word)
if len(word) > 1 and "<italic>" not in word and "<i>" not in word:
break
else:
keep_words.append(word)
if len(keep_words) > 0:
title = " ".join(keep_words)
if title.split(" ")[-1] != "spp.":
title = title.rstrip(" .:")
return title | module function_definition identifier parameters identifier block expression_statement assignment identifier none if_statement not_operator identifier block return_statement identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier list for_statement identifier identifier block if_statement boolean_operator call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list identifier if_statement boolean_operator boolean_operator comparison_operator call identifier argument_list identifier integer comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier block break_statement else_clause block expression_statement call attribute identifier identifier argument_list identifier if_statement comparison_operator call identifier argument_list identifier integer block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier if_statement comparison_operator subscript call attribute identifier identifier argument_list string string_start string_content string_end unary_operator integer string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end return_statement identifier | when a title is required, generate one from the value |
def diff_non_uni(self, y, coords, dim, coefs):
yd = np.zeros_like(y)
ndims = len(y.shape)
multi_slice = [slice(None, None)] * ndims
ref_multi_slice = [slice(None, None)] * ndims
for i, x in enumerate(coords):
weights = coefs[i]["coefficients"]
offsets = coefs[i]["offsets"]
ref_multi_slice[dim] = i
for off, w in zip(offsets, weights):
multi_slice[dim] = i + off
yd[ref_multi_slice] += w * y[multi_slice]
return yd | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement assignment identifier binary_operator list call identifier argument_list none none identifier expression_statement assignment identifier binary_operator list call identifier argument_list none none identifier for_statement pattern_list identifier identifier call identifier argument_list identifier block expression_statement assignment identifier subscript subscript identifier identifier string string_start string_content string_end expression_statement assignment identifier subscript subscript identifier identifier string string_start string_content string_end expression_statement assignment subscript identifier identifier identifier for_statement pattern_list identifier identifier call identifier argument_list identifier identifier block expression_statement assignment subscript identifier identifier binary_operator identifier identifier expression_statement augmented_assignment subscript identifier identifier binary_operator identifier subscript identifier identifier return_statement identifier | The core function to take a partial derivative on a non-uniform grid |
def remove_peer_from_bgp_speaker(self, speaker_id, body=None):
return self.put((self.bgp_speaker_path % speaker_id) +
"/remove_bgp_peer", body=body) | module function_definition identifier parameters identifier identifier default_parameter identifier none block return_statement call attribute identifier identifier argument_list binary_operator parenthesized_expression binary_operator attribute identifier identifier identifier string string_start string_content string_end keyword_argument identifier identifier | Removes a peer from BGP speaker. |
def how_many(self):
if self.linkdates != []:
if max(self.linkdates) <= list(time.localtime()):
currentdate = max(self.linkdates)
else:
currentdate = list(time.localtime())
print(("This entry has its date set in the future. "
"I will use your current local time as its date "
"instead."),
file=sys.stderr, flush=True)
stop = sys.maxsize
else:
currentdate = [1, 1, 1, 0, 0]
firstsync = self.retrieve_config('firstsync', '1')
if firstsync == 'all':
stop = sys.maxsize
else:
stop = int(firstsync)
return currentdate, stop | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier list block if_statement comparison_operator call identifier argument_list attribute identifier identifier call identifier argument_list call attribute identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list attribute identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list expression_statement call identifier argument_list parenthesized_expression concatenated_string string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end keyword_argument identifier attribute identifier identifier keyword_argument identifier true expression_statement assignment identifier attribute identifier identifier else_clause block expression_statement assignment identifier list integer integer integer integer integer expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier attribute identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier return_statement expression_list identifier identifier | Ascertain where to start downloading, and how many entries. |
def _create_event(self, alert_type, msg_title, msg, server, tags=None):
msg_title = 'Couchbase {}: {}'.format(server, msg_title)
msg = 'Couchbase instance {} {}'.format(server, msg)
return {
'timestamp': int(time.time()),
'event_type': 'couchbase_rebalance',
'msg_text': msg,
'msg_title': msg_title,
'alert_type': alert_type,
'source_type_name': self.SOURCE_TYPE_NAME,
'aggregation_key': server,
'tags': tags,
} | module function_definition identifier parameters identifier identifier identifier identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier identifier return_statement dictionary pair string string_start string_content string_end call identifier argument_list call attribute identifier identifier argument_list pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier | Create an event object |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.