code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def describe_partitioner(self, ):
self._seqid += 1
d = self._reqs[self._seqid] = defer.Deferred()
self.send_describe_partitioner()
return d | module function_definition identifier parameters identifier block expression_statement augmented_assignment attribute identifier identifier integer expression_statement assignment identifier assignment subscript attribute identifier identifier attribute identifier identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list return_statement identifier | returns the partitioner used by this cluster |
def check_config_integrity(self):
tasks_by_hash = {_hash_task(t): t for t in self.config_tasks}
if len(tasks_by_hash) != len(self.config_tasks):
raise Exception("Fatal error: there was a hash duplicate in the scheduled tasks config.")
for h, task in tasks_by_hash.items():
if task.get("monthday") and not task.get("dailytime"):
raise Exception("Fatal error: you can't schedule a task with 'monthday' and without 'dailytime' (%s)" % h)
if task.get("weekday") and not task.get("dailytime"):
raise Exception("Fatal error: you can't schedule a task with 'weekday' and without 'dailytime' (%s)" % h)
if not task.get("monthday") and not task.get("weekday") and not task.get("dailytime") and not task.get("interval"):
raise Exception("Fatal error: scheduler must be specified one of monthday,weekday,dailytime,interval. (%s)" % h) | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary_comprehension pair call identifier argument_list identifier identifier for_in_clause identifier attribute identifier identifier if_statement comparison_operator call identifier argument_list identifier call identifier argument_list attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement boolean_operator call attribute identifier identifier argument_list string string_start string_content string_end not_operator call attribute identifier identifier argument_list string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier if_statement boolean_operator call attribute identifier identifier argument_list string string_start string_content string_end not_operator call attribute identifier identifier argument_list string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier if_statement boolean_operator boolean_operator boolean_operator not_operator call attribute identifier identifier argument_list string string_start string_content string_end not_operator call attribute identifier identifier argument_list string string_start string_content string_end not_operator call attribute identifier identifier argument_list string string_start string_content string_end not_operator call attribute identifier identifier argument_list string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier | Make sure the scheduler config is valid |
def parse_compound(self):
compound_tag = Compound()
for token in self.collect_tokens_until('CLOSE_COMPOUND'):
item_key = token.value
if token.type not in ('NUMBER', 'STRING', 'QUOTED_STRING'):
raise self.error(f'Expected compound key but got {item_key!r}')
if token.type == 'QUOTED_STRING':
item_key = self.unquote_string(item_key)
if self.next().current_token.type != 'COLON':
raise self.error(f'Expected colon but got '
f'{self.current_token.value!r}')
self.next()
compound_tag[item_key] = self.parse()
return compound_tag | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier tuple string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block raise_statement call attribute identifier identifier argument_list string string_start string_content interpolation identifier type_conversion string_end if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator attribute attribute call attribute identifier identifier argument_list identifier identifier string string_start string_content string_end block raise_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start interpolation attribute attribute identifier identifier identifier type_conversion string_end expression_statement call attribute identifier identifier argument_list expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list return_statement identifier | Parse a compound from the token stream. |
def domain_whois(self, domain):
uri = self._uris["whois_domain"].format(domain)
resp_json = self.get_parse(uri)
return resp_json | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute subscript attribute identifier identifier string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement identifier | Gets whois information for a domain |
def capture_exception(fn):
def wrapped(*args):
try:
return fn(*args)
except Exception as e:
return e
return wrapped | module function_definition identifier parameters identifier block function_definition identifier parameters list_splat_pattern identifier block try_statement block return_statement call identifier argument_list list_splat identifier except_clause as_pattern identifier as_pattern_target identifier block return_statement identifier return_statement identifier | decorator that catches and returns an exception from wrapped function |
def from_string(cls, line, ignore_bad_cookies=False,
ignore_bad_attributes=True):
"Construct a Cookie object from a line of Set-Cookie header data."
cookie_dict = parse_one_response(
line, ignore_bad_cookies=ignore_bad_cookies,
ignore_bad_attributes=ignore_bad_attributes)
if not cookie_dict:
return None
return cls.from_dict(
cookie_dict, ignore_bad_attributes=ignore_bad_attributes) | module function_definition identifier parameters identifier identifier default_parameter identifier false default_parameter identifier true block expression_statement string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier if_statement not_operator identifier block return_statement none return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier | Construct a Cookie object from a line of Set-Cookie header data. |
def __zipped_files_data(self):
files = {}
with zipfile.ZipFile(self.__zip_file) as thezip:
for zipinfo in thezip.infolist():
if zipinfo.filename.endswith('metadata/icons.json'):
with thezip.open(zipinfo) as compressed_file:
files['icons.json'] = compressed_file.read()
elif zipinfo.filename.endswith('.ttf'):
name = os.path.basename(zipinfo.filename)
tokens = name.split('-')
style = tokens[1]
if style in self.FA_STYLES:
with thezip.open(zipinfo) as compressed_file:
files[style] = compressed_file.read()
assert all(style in files for style in self.FA_STYLES), \
'Not all FA styles found! Update code is broken.'
assert 'icons.json' in files, 'icons.json not found! Update code is broken.'
return files | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list attribute identifier identifier as_pattern_target identifier block for_statement identifier call attribute identifier identifier argument_list block if_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end block with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list identifier as_pattern_target identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list elif_clause call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier subscript identifier integer if_statement comparison_operator identifier attribute identifier identifier block with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list identifier as_pattern_target identifier block expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list assert_statement call identifier generator_expression comparison_operator identifier identifier for_in_clause identifier attribute identifier identifier string string_start string_content string_end assert_statement comparison_operator string string_start string_content string_end identifier string string_start string_content string_end return_statement identifier | Get a dict of all files of interest from the FA release zipfile. |
def reduce_l1(attrs, inputs, proto_obj):
new_attrs = translation_utils._fix_attribute_names(attrs, {'axes':'axis'})
new_attrs = translation_utils._add_extra_attributes(new_attrs,
{'ord' : 1})
return 'norm', new_attrs, inputs | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier dictionary pair string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier dictionary pair string string_start string_content string_end integer return_statement expression_list string string_start string_content string_end identifier identifier | Reduce input tensor by l1 normalization. |
def clean_cookie(self):
if not self.is_cookie_necessary:
return self
headers = self.request.get('headers', {})
cookies = SimpleCookie(headers['Cookie'])
for k, v in cookies.items():
new_cookie = '; '.join(
[i.OutputString() for i in cookies.values() if i != v])
new_request = deepcopy(self.request)
new_request['headers']['Cookie'] = new_cookie
self._add_task('Cookie', k, new_request)
return self | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end dictionary expression_statement assignment identifier call identifier argument_list subscript identifier string string_start string_content string_end for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list list_comprehension call attribute identifier identifier argument_list for_in_clause identifier call attribute identifier identifier argument_list if_clause comparison_operator identifier identifier expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement assignment subscript subscript identifier string string_start string_content string_end string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier return_statement identifier | Only clean the cookie from headers and return self. |
def _find_keys(self, identity='image'):
prefix = add_prefix('', identity)
raw_keys = self._find_keys_raw(prefix) or []
for raw_key in raw_keys:
yield del_prefix(raw_key) | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list string string_start string_end identifier expression_statement assignment identifier boolean_operator call attribute identifier identifier argument_list identifier list for_statement identifier identifier block expression_statement yield call identifier argument_list identifier | Finds and returns all keys for identity, |
def extra(request, provider):
identity = request.session.get('identity', None)
if not identity:
raise Http404
if request.method == "POST":
form = str_to_class(settings.EXTRA_FORM)(request.POST)
if form.is_valid():
user = form.save(request, identity, provider)
del request.session['identity']
if not settings.ACTIVATION_REQUIRED:
user = auth.authenticate(identity=identity, provider=provider)
if user:
auth.login(request, user)
return redirect(request.session.pop('next_url', settings.LOGIN_REDIRECT_URL))
else:
messages.warning(request, lang.ACTIVATION_REQUIRED_TEXT)
return redirect(settings.ACTIVATION_REDIRECT_URL)
else:
initial = request.session['extra']
form = str_to_class(settings.EXTRA_FORM)(initial=initial)
return render_to_response('netauth/extra.html', {'form': form }, context_instance=RequestContext(request)) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end none if_statement not_operator identifier block raise_statement identifier if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment identifier call call identifier argument_list attribute identifier identifier argument_list attribute identifier identifier if_statement call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier delete_statement subscript attribute identifier identifier string string_start string_content string_end if_statement not_operator attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier identifier return_statement call identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end attribute identifier identifier else_clause block expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier return_statement call identifier argument_list attribute identifier identifier else_clause block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call call identifier argument_list attribute identifier identifier argument_list keyword_argument identifier identifier return_statement call identifier argument_list string string_start string_content string_end dictionary pair string string_start string_content string_end identifier keyword_argument identifier call identifier argument_list identifier | Handle registration of new user with extra data for profile |
def _get_primary_type(ttypes, parent, logstream=stderr):
if len(ttypes) > 1:
if logstream:
message = '[tag::transcript::primary_transcript]'
message += ' WARNING: feature {:s}'.format(parent.slug)
message += ' has multiple associated transcript types'
message += ' {}'.format(ttypes)
print(message, file=logstream)
if 'mRNA' not in ttypes:
message = (
'cannot resolve multiple transcript types if "mRNA" is'
' not one of those types {}'.format(ttypes)
)
raise Exception(message)
ttypes = ['mRNA']
return ttypes[0] | module function_definition identifier parameters identifier identifier default_parameter identifier identifier block if_statement comparison_operator call identifier argument_list identifier integer block if_statement identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement augmented_assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement augmented_assignment identifier string string_start string_content string_end expression_statement augmented_assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call identifier argument_list identifier keyword_argument identifier identifier if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment identifier parenthesized_expression call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list identifier raise_statement call identifier argument_list identifier expression_statement assignment identifier list string string_start string_content string_end return_statement subscript identifier integer | Check for multiple transcript types and, if possible, select one. |
def toString(self) -> str:
return ' '.join(attr.html for attr in self._dict.values()) | module function_definition identifier parameters identifier type identifier block return_statement call attribute string string_start string_content string_end identifier generator_expression attribute identifier identifier for_in_clause identifier call attribute attribute identifier identifier identifier argument_list | Return string representation of collections. |
def reapply_sampling_strategies(self):
check_sensor = self._inspecting_client.future_check_sensor
for sensor_name, strategy in list(self._strategy_cache.items()):
try:
sensor_exists = yield check_sensor(sensor_name)
if not sensor_exists:
self._logger.warn('Did not set strategy for non-existing sensor {}'
.format(sensor_name))
continue
result = yield self.set_sampling_strategy(sensor_name, strategy)
except KATCPSensorError as e:
self._logger.error('Error reapplying strategy for sensor {0}: {1!s}'
.format(sensor_name, e))
except Exception:
self._logger.exception('Unhandled exception reapplying strategy for '
'sensor {}'.format(sensor_name), exc_info=True) | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier for_statement pattern_list identifier identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list block try_statement block expression_statement assignment identifier yield call identifier argument_list identifier if_statement not_operator identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier continue_statement expression_statement assignment identifier yield call attribute identifier identifier argument_list identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier except_clause identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list identifier keyword_argument identifier true | Reapply all sensor strategies using cached values |
def ask_password(*question: Token) -> str:
tokens = get_ask_tokens(question)
info(*tokens)
answer = read_password()
return answer | module function_definition identifier parameters typed_parameter list_splat_pattern identifier type identifier type identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement call identifier argument_list list_splat identifier expression_statement assignment identifier call identifier argument_list return_statement identifier | Ask the user to enter a password. |
def resources(self):
used_resources = self._used_resources()
ret = collections.defaultdict(dict)
for resource, total in six.iteritems(self._resources):
ret[resource]['total'] = total
if resource in used_resources:
ret[resource]['used'] = used_resources[resource]
else:
ret[resource]['used'] = 0
return ret | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement pattern_list identifier identifier call attribute identifier identifier argument_list attribute identifier identifier block expression_statement assignment subscript subscript identifier identifier string string_start string_content string_end identifier if_statement comparison_operator identifier identifier block expression_statement assignment subscript subscript identifier identifier string string_start string_content string_end subscript identifier identifier else_clause block expression_statement assignment subscript subscript identifier identifier string string_start string_content string_end integer return_statement identifier | get total resources and available ones |
def warning(self, msg, *args, **kwargs):
self._log("WARNING", msg, args, kwargs) | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier identifier | Log 'msg % args' with the warning severity level |
def encode_value_using_ma(message_attribute: int, value: Optional[Union[int, float]]) -> int:
if message_attribute == MA_TX3AC_100A:
if value is None:
return 0xfe
return int(value)
elif message_attribute == MA_TX3AC_10A:
if value is None:
return 0xfe
return int(value * 10)
else:
if value is None:
return 0x80
elif value < 0:
return 0x100 + int(value)
return int(value) | module function_definition identifier parameters typed_parameter identifier type identifier typed_parameter identifier type generic_type identifier type_parameter type generic_type identifier type_parameter type identifier type identifier type identifier block if_statement comparison_operator identifier identifier block if_statement comparison_operator identifier none block return_statement integer return_statement call identifier argument_list identifier elif_clause comparison_operator identifier identifier block if_statement comparison_operator identifier none block return_statement integer return_statement call identifier argument_list binary_operator identifier integer else_clause block if_statement comparison_operator identifier none block return_statement integer elif_clause comparison_operator identifier integer block return_statement binary_operator integer call identifier argument_list identifier return_statement call identifier argument_list identifier | Encode special sensor value using the message attribute. |
def homogeneous_poisson(self):
return (1. - 2. / 3. * self.g_vrh / self.k_vrh) / \
(2. + 2. / 3. * self.g_vrh / self.k_vrh) | module function_definition identifier parameters identifier block return_statement binary_operator parenthesized_expression binary_operator float binary_operator binary_operator binary_operator float float attribute identifier identifier attribute identifier identifier line_continuation parenthesized_expression binary_operator float binary_operator binary_operator binary_operator float float attribute identifier identifier attribute identifier identifier | returns the homogeneous poisson ratio |
def paragraph_spans(self):
if not self.is_tagged(PARAGRAPHS):
self.tokenize_paragraphs()
return self.spans(PARAGRAPHS) | module function_definition identifier parameters identifier block if_statement not_operator call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list identifier | The list of spans representing ``paragraphs`` layer elements. |
def _build_url(*args, **kwargs) -> str:
resource_url = API_RESOURCES_URLS
for key in args:
resource_url = resource_url[key]
if kwargs:
resource_url = resource_url.format(**kwargs)
return urljoin(URL, resource_url) | module function_definition identifier parameters list_splat_pattern identifier dictionary_splat_pattern identifier type identifier block expression_statement assignment identifier identifier for_statement identifier identifier block expression_statement assignment identifier subscript identifier identifier if_statement identifier block expression_statement assignment identifier call attribute identifier identifier argument_list dictionary_splat identifier return_statement call identifier argument_list identifier identifier | Return a valid url. |
def transformer_base_v3():
hparams = transformer_base_v2()
hparams.optimizer_adam_beta2 = 0.997
hparams.learning_rate_schedule = (
"constant*linear_warmup*rsqrt_decay*rsqrt_hidden_size")
hparams.learning_rate_constant = 2.0
return hparams | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier float expression_statement assignment attribute identifier identifier parenthesized_expression string string_start string_content string_end expression_statement assignment attribute identifier identifier float return_statement identifier | Base parameters for Transformer model. |
def lookup(ctx, number, comment, cache):
phone = PhoneNumber(number, comment=comment)
info('{0} | {1}'.format(phone.number, ctx.obj['config']['lookups'].keys()))
if phone.number in ctx.obj['config']['lookups']:
info('{0} is already cached:'.format(phone.number))
info(jsonify(ctx.obj['config']['lookups'][phone.number]))
return
data = phone.lookup()
info('carrier = {0}'.format(phone.carrier))
info('type = {0}'.format(phone.type))
info('cache = {0}'.format(cache))
if cache:
ctx.obj['config']['lookups'][phone.number] = phone.raw
with open(CONFIG_FILE, 'wb') as cfg:
cfg.write(json.dumps(ctx.obj['config'], indent=2)) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier call attribute subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end identifier argument_list if_statement comparison_operator attribute identifier identifier subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call identifier argument_list call identifier argument_list subscript subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end attribute identifier identifier return_statement expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier if_statement identifier block expression_statement assignment subscript subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end attribute identifier identifier attribute identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list subscript attribute identifier identifier string string_start string_content string_end keyword_argument identifier integer | Get the carrier and country code for a phone number |
def emit_metadata_for_region_py(self, region, region_filename, module_prefix):
terrobj = self.territory[region]
with open(region_filename, "w") as outfile:
prnt(_REGION_METADATA_PROLOG % {'region': terrobj.identifier(), 'module': module_prefix}, file=outfile)
prnt("PHONE_METADATA_%s = %s" % (terrobj.identifier(), terrobj), file=outfile) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call identifier argument_list binary_operator identifier dictionary pair string string_start string_content string_end call attribute identifier identifier argument_list pair string string_start string_content string_end identifier keyword_argument identifier identifier expression_statement call identifier argument_list binary_operator string string_start string_content string_end tuple call attribute identifier identifier argument_list identifier keyword_argument identifier identifier | Emit Python code generating the metadata for the given region |
def readBimFile(basefilename):
bim_fn = basefilename+'.bim'
rv = SP.loadtxt(bim_fn,delimiter='\t',usecols = (0,3),dtype=int)
return rv | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content escape_sequence string_end keyword_argument identifier tuple integer integer keyword_argument identifier identifier return_statement identifier | Helper fuinction that reads bim files |
def combobox_set_model_from_list(cb, items):
cb.clear()
model = gtk.ListStore(str)
for i in items:
model.append([i])
cb.set_model(model)
if type(cb) == gtk.ComboBoxEntry:
cb.set_text_column(0)
elif type(cb) == gtk.ComboBox:
cell = gtk.CellRendererText()
cb.pack_start(cell, True)
cb.add_attribute(cell, 'text', 0) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list list identifier expression_statement call attribute identifier identifier argument_list identifier if_statement comparison_operator call identifier argument_list identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list integer elif_clause comparison_operator call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier true expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end integer | Setup a ComboBox or ComboBoxEntry based on a list of strings. |
def _setse(self, i):
if i > 0:
u = (i * 2) - 1
else:
u = -2 * i
self._setue(u) | module function_definition identifier parameters identifier identifier block if_statement comparison_operator identifier integer block expression_statement assignment identifier binary_operator parenthesized_expression binary_operator identifier integer integer else_clause block expression_statement assignment identifier binary_operator unary_operator integer identifier expression_statement call attribute identifier identifier argument_list identifier | Initialise bitstring with signed exponential-Golomb code for integer i. |
def import_from_string(full_class_name):
s = full_class_name.split('.')
class_name = s[-1]
module_name = full_class_name[:-len(class_name)-1]
module = importlib.import_module(module_name)
klass = getattr(module, class_name)
return klass | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier subscript identifier unary_operator integer expression_statement assignment identifier subscript identifier slice binary_operator unary_operator call identifier argument_list identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier identifier return_statement identifier | return a class based on it's full class name |
def _show_psrs():
sep = os.linesep
types = "Supported types: " + ", ".join(API.list_types())
cids = "IDs: " + ", ".join(c for c, _ps in API.list_by_cid())
x_vs_ps = [" %s: %s" % (x, ", ".join(p.cid() for p in ps))
for x, ps in API.list_by_extension()]
exts = "File extensions:" + sep + sep.join(x_vs_ps)
_exit_with_output(sep.join([types, exts, cids])) | module function_definition identifier parameters block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier binary_operator string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator string string_start string_content string_end call attribute string string_start string_content string_end identifier generator_expression identifier for_in_clause pattern_list identifier identifier call attribute identifier identifier argument_list expression_statement assignment identifier list_comprehension binary_operator string string_start string_content string_end tuple identifier call attribute string string_start string_content string_end identifier generator_expression call attribute identifier identifier argument_list for_in_clause identifier identifier for_in_clause pattern_list identifier identifier call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator binary_operator string string_start string_content string_end identifier call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list call attribute identifier identifier argument_list list identifier identifier identifier | Show list of info of parsers available |
def info_1(*tokens: Token, **kwargs: Any) -> None:
info(bold, blue, "::", reset, *tokens, **kwargs) | module function_definition identifier parameters typed_parameter list_splat_pattern identifier type identifier typed_parameter dictionary_splat_pattern identifier type identifier type none block expression_statement call identifier argument_list identifier identifier string string_start string_content string_end identifier list_splat identifier dictionary_splat identifier | Print an important informative message |
def visit_num(self, node, parent):
return nodes.Const(
node.n,
getattr(node, "lineno", None),
getattr(node, "col_offset", None),
parent,
) | module function_definition identifier parameters identifier identifier identifier block return_statement call attribute identifier identifier argument_list attribute identifier identifier call identifier argument_list identifier string string_start string_content string_end none call identifier argument_list identifier string string_start string_content string_end none identifier | visit a Num node by returning a fresh instance of Const |
def specialRound(number, rounding):
temp = 0
if rounding == 0:
temp = number
else:
temp = round(number, rounding)
if temp % 1 == 0:
return int(temp)
else:
return float(temp) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier integer if_statement comparison_operator identifier integer block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier identifier if_statement comparison_operator binary_operator identifier integer integer block return_statement call identifier argument_list identifier else_clause block return_statement call identifier argument_list identifier | A method used to round a number in the way that UsefulUtils rounds. |
def load_projects(self):
server_config = Config.instance().get_section_config("Server")
projects_path = os.path.expanduser(server_config.get("projects_path", "~/GNS3/projects"))
os.makedirs(projects_path, exist_ok=True)
try:
for project_path in os.listdir(projects_path):
project_dir = os.path.join(projects_path, project_path)
if os.path.isdir(project_dir):
for file in os.listdir(project_dir):
if file.endswith(".gns3"):
try:
yield from self.load_project(os.path.join(project_dir, file), load=False)
except (aiohttp.web_exceptions.HTTPConflict, NotImplementedError):
pass
except OSError as e:
log.error(str(e)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier true try_statement block for_statement identifier call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier block for_statement identifier call attribute identifier identifier argument_list identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block try_statement block expression_statement yield call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier identifier keyword_argument identifier false except_clause tuple attribute attribute identifier identifier identifier identifier block pass_statement except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call identifier argument_list identifier | Preload the list of projects from disk |
def _set_element_property(parent_to_parse, element_path, prop_name, value):
element = get_element(parent_to_parse)
if element is None:
return None
if element_path and not element_exists(element, element_path):
element = insert_element(element, 0, element_path)
if not isinstance(value, string_types):
value = u''
setattr(element, prop_name, value)
return element | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier none block return_statement none if_statement boolean_operator identifier not_operator call identifier argument_list identifier identifier block expression_statement assignment identifier call identifier argument_list identifier integer identifier if_statement not_operator call identifier argument_list identifier identifier block expression_statement assignment identifier string string_start string_end expression_statement call identifier argument_list identifier identifier identifier return_statement identifier | Assigns the value to the parsed parent element and then returns it |
def kernel(self):
stop_words = [ y.lower() for y in self.abbreviations.values() + self.filler_words ]
kernel = ' '.join([ x for x in self.expand().split() if x.lower() not in stop_words ])
kernel = re.sub(r'\s*United States', '', kernel)
return kernel | module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list for_in_clause identifier binary_operator call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list list_comprehension identifier for_in_clause identifier call attribute call attribute identifier identifier argument_list identifier argument_list if_clause comparison_operator call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end identifier return_statement identifier | The 'kernel' is an attempt to get at just the most pithy words in the name |
def to_file_mode(self):
for message_no in range(len(self.messages)):
self.__to_file(message_no) | module function_definition identifier parameters identifier block for_statement identifier call identifier argument_list call identifier argument_list attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier | Write all the messages to files |
def _won_in(self):
if not self._summary['finished']:
return
starting_age = self._summary['settings']['starting_age'].lower()
if starting_age == 'post imperial':
starting_age = 'imperial'
ages_reached = set([starting_age])
for player in self._summary['players']:
for age, reached in player['ages'].items():
if reached:
ages_reached.add(age)
ages = ['imperial', 'castle', 'feudal', 'dark']
for age in ages:
if age in ages_reached:
return age | module function_definition identifier parameters identifier block if_statement not_operator subscript attribute identifier identifier string string_start string_content string_end block return_statement expression_statement assignment identifier call attribute subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end identifier argument_list if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list list identifier for_statement identifier subscript attribute identifier identifier string string_start string_content string_end block for_statement pattern_list identifier identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list block if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end for_statement identifier identifier block if_statement comparison_operator identifier identifier block return_statement identifier | Get age the game was won in. |
def _get_goslimids_norel(self, dagslim):
go_slims = set()
go2obj = self.gosubdag.go2obj
for goid in dagslim:
goobj = go2obj[goid]
if not goobj.relationship:
go_slims.add(goobj.id)
return go_slims | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier attribute attribute identifier identifier identifier for_statement identifier identifier block expression_statement assignment identifier subscript identifier identifier if_statement not_operator attribute identifier identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement identifier | Get all GO slim GO IDs that do not have a relationship. |
def cli(ctx, project_dir):
exit_code = SCons(project_dir).verify()
ctx.exit(exit_code) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier | Verify the verilog code. |
def list_commands(self, ctx):
rv = defaults.list_commands(ctx)
if self._commands_dir:
for filename in os.listdir(self._commands_dir):
if _is_command_file(filename) and filename[:-3] not in rv:
rv.append(filename[:-3])
rv.sort()
return rv | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement attribute identifier identifier block for_statement identifier call attribute identifier identifier argument_list attribute identifier identifier block if_statement boolean_operator call identifier argument_list identifier comparison_operator subscript identifier slice unary_operator integer identifier block expression_statement call attribute identifier identifier argument_list subscript identifier slice unary_operator integer expression_statement call attribute identifier identifier argument_list return_statement identifier | List commands from the commands dir and default group |
def close(self):
if self._device is not None:
ibsta = self._lib.ibonl(self._device, 0)
self._check_status(ibsta)
self._device = None | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier none | Closes the gpib transport. |
def _normalize_branch_node(self, node):
not_blank_items_count = sum(1 for x in range(17) if node[x])
assert not_blank_items_count >= 1
if not_blank_items_count > 1:
self._encode_node(node)
return node
not_blank_index = [i for i, item in enumerate(node) if item][0]
if not_blank_index == 16:
o = [pack_nibbles(with_terminator([])), node[16]]
self._encode_node(o)
return o
sub_node = self._decode_to_node(node[not_blank_index])
sub_node_type = self._get_node_type(sub_node)
if is_key_value_type(sub_node_type):
self._delete_node_storage(sub_node)
new_key = [not_blank_index] + \
unpack_to_nibbles(sub_node[0])
o = [pack_nibbles(new_key), sub_node[1]]
self._encode_node(o)
return o
if sub_node_type == NODE_TYPE_BRANCH:
o = [pack_nibbles([not_blank_index]),
node[not_blank_index]]
self._encode_node(o)
return o
assert False | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier generator_expression integer for_in_clause identifier call identifier argument_list integer if_clause subscript identifier identifier assert_statement comparison_operator identifier integer if_statement comparison_operator identifier integer block expression_statement call attribute identifier identifier argument_list identifier return_statement identifier expression_statement assignment identifier subscript list_comprehension identifier for_in_clause pattern_list identifier identifier call identifier argument_list identifier if_clause identifier integer if_statement comparison_operator identifier integer block expression_statement assignment identifier list call identifier argument_list call identifier argument_list list subscript identifier integer expression_statement call attribute identifier identifier argument_list identifier return_statement identifier expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement call identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator list identifier line_continuation call identifier argument_list subscript identifier integer expression_statement assignment identifier list call identifier argument_list identifier subscript identifier integer expression_statement call attribute identifier identifier argument_list identifier return_statement identifier if_statement comparison_operator identifier identifier block expression_statement assignment identifier list call identifier argument_list list identifier subscript identifier identifier expression_statement call attribute identifier identifier argument_list identifier return_statement identifier assert_statement false | node should have only one item changed |
def remove_server(self, name):
for i in self._server_list:
if i['key'] == name:
try:
self._server_list.remove(i)
logger.debug("Remove server %s from the list" % name)
logger.debug("Updated servers list (%s servers): %s" % (
len(self._server_list), self._server_list))
except ValueError:
logger.error(
"Cannot remove server %s from the list" % name) | module function_definition identifier parameters identifier identifier block for_statement identifier attribute identifier identifier block if_statement comparison_operator subscript identifier string string_start string_content string_end identifier block try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end tuple call identifier argument_list attribute identifier identifier attribute identifier identifier except_clause identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier | Remove a server from the dict. |
def close(self):
self.fire(JSONStreamer.DOC_END_EVENT)
self._stack = None
self._parser.close() | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier none expression_statement call attribute attribute identifier identifier identifier argument_list | Closes the streamer which causes a `DOC_END_EVENT` to be fired and frees up memory used by yajl |
def _collected_label(collect, label):
if not collect.__name__.startswith('<'):
return label + ' ' + collect.__name__
else:
return label | module function_definition identifier parameters identifier identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end block return_statement binary_operator binary_operator identifier string string_start string_content string_end attribute identifier identifier else_clause block return_statement identifier | Label of a collected column. |
def canonical_name(sgf_name):
sgf_name = os.path.normpath(sgf_name)
assert sgf_name.endswith('.sgf'), sgf_name
sgf_name = sgf_name[:-4]
with_folder = re.search(r'/([^/]*/eval/.*)', sgf_name)
if with_folder:
return with_folder.group(1)
return os.path.basename(sgf_name) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier assert_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier subscript identifier slice unary_operator integer expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier if_statement identifier block return_statement call attribute identifier identifier argument_list integer return_statement call attribute attribute identifier identifier identifier argument_list identifier | Keep filename and some date folders |
def which(cmd, path="PATH"):
if os.path.exists(cmd):
return cmd
if cmd[0] == '/':
return None
for segment in os.getenv(path).split(":"):
program = os.path.normpath(os.path.join(segment, cmd))
if os.path.exists(program):
return program
return None | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block if_statement call attribute attribute identifier identifier identifier argument_list identifier block return_statement identifier if_statement comparison_operator subscript identifier integer string string_start string_content string_end block return_statement none for_statement identifier call attribute call attribute identifier identifier argument_list identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier block return_statement identifier return_statement none | Find cmd on PATH. |
def from_module(self, path):
bundles = PythonLoader(path).load_bundles()
for name in bundles:
self.register(name, bundles[name]) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list identifier subscript identifier identifier | Register bundles from a Python module |
def __install_ssh_config(self, config):
if not config.is_affirmative('use_global_ssh', default="no"):
ssh_config_injection = self._build_ssh_config(config)
if not os.path.exists(ssh_config_path):
if self.injections.in_noninjected_file(ssh_config_path, "Host %s" % config.get('host')):
if config.is_affirmative('override'):
self.injections.inject(ssh_config_path, ssh_config_injection)
else:
self.injections.inject(ssh_config_path, ssh_config_injection)
else:
self.injections.inject(ssh_config_path, ssh_config_injection)
self.injections.commit() | module function_definition identifier parameters identifier identifier block if_statement not_operator call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block if_statement call attribute attribute identifier identifier identifier argument_list identifier binary_operator string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Install the ssh configuration |
def _get_release_params():
release_name = request.form.get('release_name')
utils.jsonify_assert(release_name, 'release_name required')
release_number = request.form.get('release_number', type=int)
utils.jsonify_assert(release_number is not None, 'release_number required')
return release_name, release_number | module function_definition identifier parameters block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list comparison_operator identifier none string string_start string_content string_end return_statement expression_list identifier identifier | Gets the release params from the current request. |
async def get_alarms(self):
url = '{}{}'.format(self.base_url, self.endpoint)
try:
with async_timeout.timeout(5, loop=self._loop):
response = await self._session.get(url)
_LOGGER.debug(
"Response from Netdata: %s", response.status)
data = await response.text()
_LOGGER.debug(data)
self.alarms = data
except (asyncio.TimeoutError, aiohttp.ClientError, socket.gaierror):
_LOGGER.error("Can not load data from Netdata")
raise exceptions.NetdataConnectionError() | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier try_statement block with_statement with_clause with_item call attribute identifier identifier argument_list integer keyword_argument identifier attribute identifier identifier block expression_statement assignment identifier await call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier await call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier identifier except_clause tuple attribute identifier identifier attribute identifier identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end raise_statement call attribute identifier identifier argument_list | Get alarms for a Netdata instance. |
def readline(self) -> bytes:
assert self._state == ConnectionState.created, \
'Expect conn created. Got {}.'.format(self._state)
with self._close_timer.with_timeout():
data = yield from \
self.run_network_operation(
self.reader.readline(),
close_timeout=self._timeout,
name='Readline')
return data | module function_definition identifier parameters identifier type identifier block assert_statement comparison_operator attribute identifier identifier attribute identifier identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier with_statement with_clause with_item call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier yield line_continuation call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier string string_start string_content string_end return_statement identifier | Read a line of data. |
def host_context(func):
"Sets the context of the setting to the current host"
@wraps(func)
def decorator(*args, **kwargs):
hosts = get_hosts_settings()
with settings(**hosts[env.host]):
return func(*args, **kwargs)
return decorator | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end decorated_definition decorator call identifier argument_list identifier function_definition identifier parameters list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list with_statement with_clause with_item call identifier argument_list dictionary_splat subscript identifier attribute identifier identifier block return_statement call identifier argument_list list_splat identifier dictionary_splat identifier return_statement identifier | Sets the context of the setting to the current host |
def metadata(self):
from sqlalchemy import MetaData
metadata = MetaData(bind=self.engine, schema=self._schema)
metadata.reflect(self.engine)
return metadata | module function_definition identifier parameters identifier block import_from_statement dotted_name identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement identifier | Return an SqlAlchemy MetaData object, bound to the engine. |
def automeshgrid(
x, y, step=0.02, xstep=None, ystep=None, pad=0.5, xpad=None, ypad=None
):
if xpad is None:
xpad = pad
if xstep is None:
xstep = step
if ypad is None:
ypad = pad
if ystep is None:
ystep = step
xmin = x.min() - xpad
xmax = x.max() + xpad
ymin = y.min() - ypad
ymax = y.max() + ypad
return meshgrid(xmin, xmax, step, ymin, ymax, ystep) | module function_definition identifier parameters identifier identifier default_parameter identifier float default_parameter identifier none default_parameter identifier none default_parameter identifier float default_parameter identifier none default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier return_statement call identifier argument_list identifier identifier identifier identifier identifier identifier | Make a meshgrid, inferred from data. |
def parse_leehom_logs(self, f):
regexes = {
'total': r"Total reads[\s\:]+(\d+)",
'merged_trimming': r"Merged \(trimming\)\s+(\d+)",
'merged_overlap': r"Merged \(overlap\)\s+(\d+)",
'kept': r"Kept PE/SR\s+(\d+)",
'trimmed': r"Trimmed SR\s+(\d+)",
'adapter_dimers_chimeras': r"Adapter dimers/chimeras\s+(\d+)",
'failed_key': r"Failed Key\s+(\d+)"
}
parsed_data = dict()
for l in f['f']:
for k, r in regexes.items():
match = re.search(r, l)
if match:
parsed_data[k] = int(match.group(1))
return parsed_data | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call identifier argument_list for_statement identifier subscript identifier string string_start string_content string_end block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier if_statement identifier block expression_statement assignment subscript identifier identifier call identifier argument_list call attribute identifier identifier argument_list integer return_statement identifier | Go through log file looking for leehom output |
def stop(self):
if self._timer:
self._timer.stop()
self._timer.deleteLater() | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list | Stop the current timer if there is one and cancel the async call. |
def add_scope(self, scope_type, scope_name, scope_start, is_method=False):
if self._curr is not None:
self._curr['end'] = scope_start - 1
self._curr = {
'type': scope_type, 'name': scope_name,
'start': scope_start, 'end': scope_start
}
if is_method and self._positions:
last = self._positions[-1]
if not 'methods' in last:
last['methods'] = []
last['methods'].append(self._curr)
else:
self._positions.append(self._curr) | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier false block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end binary_operator identifier integer expression_statement assignment attribute identifier identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier if_statement boolean_operator identifier attribute identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier unary_operator integer if_statement not_operator comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end list expression_statement call attribute subscript identifier string string_start string_content string_end identifier argument_list attribute identifier identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier | we identified a scope and add it to positions. |
def length(self, t0=0, t1=1, error=None, min_depth=None):
return abs(self.end - self.start)*(t1-t0) | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier integer default_parameter identifier none default_parameter identifier none block return_statement binary_operator call identifier argument_list binary_operator attribute identifier identifier attribute identifier identifier parenthesized_expression binary_operator identifier identifier | returns the length of the line segment between t0 and t1. |
def unstruct_strat(self):
return (
UnstructureStrategy.AS_DICT
if self._unstructure_attrs == self.unstructure_attrs_asdict
else UnstructureStrategy.AS_TUPLE
) | module function_definition identifier parameters identifier block return_statement parenthesized_expression conditional_expression attribute identifier identifier comparison_operator attribute identifier identifier attribute identifier identifier attribute identifier identifier | The default way of unstructuring ``attrs`` classes. |
def secured_clipboard(item):
expire_clock = time.time()
def set_text(clipboard, selectiondata, info, data):
if 15.0 >= time.time() - expire_clock:
selectiondata.set_text(item.get_secret())
clipboard.clear()
def clear(clipboard, data):
pass
targets = [("STRING", 0, 0)
,("TEXT", 0, 1)
,("COMPOUND_TEXT", 0, 2)
,("UTF8_STRING", 0, 3)]
cp = gtk.clipboard_get()
cp.set_with_data(targets, set_text, clear) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list function_definition identifier parameters identifier identifier identifier identifier block if_statement comparison_operator float binary_operator call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list function_definition identifier parameters identifier identifier block pass_statement expression_statement assignment identifier list tuple string string_start string_content string_end integer integer tuple string string_start string_content string_end integer integer tuple string string_start string_content string_end integer integer tuple string string_start string_content string_end integer integer expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier identifier identifier | This clipboard only allows 1 paste |
def action(route, template='', methods=['GET']):
def real_decorator(function):
function.pi_api_action = True
function.pi_api_route = route
function.pi_api_template = template
function.pi_api_methods = methods
if hasattr(function, 'pi_api_crossdomain'):
if not function.pi_api_crossdomain_data['methods']:
function.pi_api_crossdomain_data['methods'] = methods
if 'OPTIONS' not in function.pi_api_methods:
function.pi_api_methods += ['OPTIONS']
return function
return real_decorator | module function_definition identifier parameters identifier default_parameter identifier string string_start string_end default_parameter identifier list string string_start string_content string_end block function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier true expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier if_statement call identifier argument_list identifier string string_start string_content string_end block if_statement not_operator subscript attribute identifier identifier string string_start string_content string_end block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end identifier if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement augmented_assignment attribute identifier identifier list string string_start string_content string_end return_statement identifier return_statement identifier | Decorator to create an action |
def destroy(self):
result = self._result(
["heroku", "apps:destroy", "--app", self.name, "--confirm", self.name]
)
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end attribute identifier identifier string string_start string_content string_end attribute identifier identifier return_statement identifier | Destroy an app and all its add-ons |
def send(self, message):
serialized = message.SerializeToString()
log_binary(_LOGGER, '>> Send', Data=serialized)
if self._chacha:
serialized = self._chacha.encrypt(serialized)
log_binary(_LOGGER, '>> Send', Encrypted=serialized)
data = write_variant(len(serialized)) + serialized
self._transport.write(data)
_LOGGER.debug('>> Send: Protobuf=%s', message) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call identifier argument_list identifier string string_start string_content string_end keyword_argument identifier identifier if_statement attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement call identifier argument_list identifier string string_start string_content string_end keyword_argument identifier identifier expression_statement assignment identifier binary_operator call identifier argument_list call identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier | Send message to device. |
def remove_routes(self, item, routes):
for route in routes:
items = self._routes.get(route)
try:
items.remove(item)
LOG.debug('removed item from route %s', route)
except ValueError:
pass
if not items:
self._routes.pop(route)
LOG.debug('removed route %s', route) | module function_definition identifier parameters identifier identifier identifier block for_statement identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier try_statement block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier except_clause identifier block pass_statement if_statement not_operator identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier | Removes item from matching routes |
def update(self):
stats = self.get_init_value()
if self.input_method == 'local':
self.uptime = datetime.now() - datetime.fromtimestamp(psutil.boot_time())
stats = str(self.uptime).split('.')[0]
elif self.input_method == 'snmp':
uptime = self.get_stats_snmp(snmp_oid=snmp_oid)['_uptime']
try:
stats = str(timedelta(seconds=int(uptime) / 100))
except Exception:
pass
self.stats = stats
return self.stats | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier binary_operator call attribute identifier identifier argument_list call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier subscript call attribute call identifier argument_list attribute identifier identifier identifier argument_list string string_start string_content string_end integer elif_clause comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment identifier subscript call attribute identifier identifier argument_list keyword_argument identifier identifier string string_start string_content string_end try_statement block expression_statement assignment identifier call identifier argument_list call identifier argument_list keyword_argument identifier binary_operator call identifier argument_list identifier integer except_clause identifier block pass_statement expression_statement assignment attribute identifier identifier identifier return_statement attribute identifier identifier | Update uptime stat using the input method. |
def _add_image(collection, image):
image_prep = {
'id': image.id,
'name': image.name,
'created_at': image.created_at,
'file': image.file,
'min_disk': image.min_disk,
'min_ram': image.min_ram,
'owner': image.owner,
'protected': image.protected,
'status': image.status,
'tags': image.tags,
'updated_at': image.updated_at,
'visibility': image.visibility,
}
for attr in ['container_format', 'disk_format', 'size']:
if attr in image:
image_prep[attr] = image[attr]
if type(collection) is dict:
collection[image.name] = image_prep
elif type(collection) is list:
collection.append(image_prep)
else:
msg = '"collection" is {0}'.format(type(collection)) +\
'instead of dict or list.'
log.error(msg)
raise TypeError(msg)
return collection | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier for_statement identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block if_statement comparison_operator identifier identifier block expression_statement assignment subscript identifier identifier subscript identifier identifier if_statement comparison_operator call identifier argument_list identifier identifier block expression_statement assignment subscript identifier attribute identifier identifier identifier elif_clause comparison_operator call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement assignment identifier binary_operator call attribute string string_start string_content string_end identifier argument_list call identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier raise_statement call identifier argument_list identifier return_statement identifier | Add image to given dictionary |
def _find_in_columncollection(columns, name):
for col in columns:
if col.name == name or getattr(col, '_label', None) == name:
return col
return None | module function_definition identifier parameters identifier identifier block for_statement identifier identifier block if_statement boolean_operator comparison_operator attribute identifier identifier identifier comparison_operator call identifier argument_list identifier string string_start string_content string_end none identifier block return_statement identifier return_statement none | Find a column in a column collection by name or _label |
async def _retransmit(self, sequence_number):
packet = self.__rtp_history.get(sequence_number % RTP_HISTORY_SIZE)
if packet and packet.sequence_number == sequence_number:
if self.__rtx_payload_type is not None:
packet = wrap_rtx(packet,
payload_type=self.__rtx_payload_type,
sequence_number=self.__rtx_sequence_number,
ssrc=self._rtx_ssrc)
self.__rtx_sequence_number = uint16_add(self.__rtx_sequence_number, 1)
self.__log_debug('> %s', packet)
packet_bytes = packet.serialize(self.__rtp_header_extensions_map)
await self.transport._send_rtp(packet_bytes) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list binary_operator identifier identifier if_statement boolean_operator identifier comparison_operator attribute identifier identifier identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement await call attribute attribute identifier identifier identifier argument_list identifier | Retransmit an RTP packet which was reported as lost. |
def update_earthquake_info(self):
self.label_earthquake_model()
current_index = self.earthquake_function.currentIndex()
model = EARTHQUAKE_FUNCTIONS[current_index]
notes = ''
for note in model['notes']:
notes += note + '\n\n'
citations = ''
for citation in model['citations']:
citations += citation['text'] + '\n\n'
text = tr(
'Description:\n\n%s\n\n'
'Notes:\n\n%s\n\n'
'Citations:\n\n%s') % (
model['description'],
notes,
citations)
self.earthquake_fatality_model_notes.setText(text) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier subscript identifier identifier expression_statement assignment identifier string string_start string_end for_statement identifier subscript identifier string string_start string_content string_end block expression_statement augmented_assignment identifier binary_operator identifier string string_start string_content escape_sequence escape_sequence string_end expression_statement assignment identifier string string_start string_end for_statement identifier subscript identifier string string_start string_content string_end block expression_statement augmented_assignment identifier binary_operator subscript identifier string string_start string_content string_end string string_start string_content escape_sequence escape_sequence string_end expression_statement assignment identifier binary_operator call identifier argument_list concatenated_string string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence string_end string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence string_end string string_start string_content escape_sequence escape_sequence string_end tuple subscript identifier string string_start string_content string_end identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Update information about earthquake info. |
def check_status_logfile(self, checker_func):
self.status = checker_func(self.logfile)
return self.status | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier return_statement attribute identifier identifier | Check on the status of this particular job using the logfile |
def configure_logger(logger, filename, folder, log_level):
fmt = logging.Formatter('%(asctime)s %(levelname)s: %(message)s')
if folder is not None:
log_file = os.path.join(folder, filename)
hdl = logging.FileHandler(log_file)
hdl.setFormatter(fmt)
hdl.setLevel(log_level)
logger.addHandler(hdl)
shdl = logging.StreamHandler()
shdl.setLevel(log_level)
shdl.setFormatter(fmt)
logger.addHandler(shdl)
logger.setLevel(log_level) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | Configure logging behvior for the simulations. |
def dynamic_sum(values, limit_n=1000, acc=0, depth=4):
if len(values) < limit_n:
return acc + sum(values)
if depth > 0:
half = len(values) // 2
return add(
dynamic_sum(values[:half], limit_n, acc, depth=depth-1),
dynamic_sum(values[half:], limit_n, 0, depth=depth-1))
return dynamic_sum(values[limit_n:], limit_n,
acc + sum(values[:limit_n]), depth) | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier integer default_parameter identifier integer block if_statement comparison_operator call identifier argument_list identifier identifier block return_statement binary_operator identifier call identifier argument_list identifier if_statement comparison_operator identifier integer block expression_statement assignment identifier binary_operator call identifier argument_list identifier integer return_statement call identifier argument_list call identifier argument_list subscript identifier slice identifier identifier identifier keyword_argument identifier binary_operator identifier integer call identifier argument_list subscript identifier slice identifier identifier integer keyword_argument identifier binary_operator identifier integer return_statement call identifier argument_list subscript identifier slice identifier identifier binary_operator identifier call identifier argument_list subscript identifier slice identifier identifier | Example of dynamic sum. |
def _handle_tag_fileattributes(self):
obj = _make_object("FileAttributes")
bc = BitConsumer(self._src)
bc.u_get(1)
obj.UseDirectBlit = bc.u_get(1)
obj.UseGPU = bc.u_get(1)
obj.HasMetadata = bc.u_get(1)
obj.ActionScript3 = bc.u_get(1)
bc.u_get(2)
obj.UseNetwork = bc.u_get(1)
bc.u_get(24)
return obj | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list integer expression_statement call attribute identifier identifier argument_list integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list integer expression_statement call attribute identifier identifier argument_list integer return_statement identifier | Handle the FileAttributes tag. |
def query_one(cls, *args, **kwargs):
doc = cls._coll.find_one(*args, **kwargs)
if doc:
return cls.from_storage(doc) | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list list_splat identifier dictionary_splat identifier if_statement identifier block return_statement call attribute identifier identifier argument_list identifier | Same as collection.find_one, but return Document then dict |
def _default_format(self, occur):
if self.text or self.children:
return self.start_tag() + "%s" + self.end_tag()
return self.start_tag(empty=True) | module function_definition identifier parameters identifier identifier block if_statement boolean_operator attribute identifier identifier attribute identifier identifier block return_statement binary_operator binary_operator call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list keyword_argument identifier true | Return the default serialization format. |
def generate_moffat_profile(seeing_fwhm, alpha):
scale = 2 * math.sqrt(2**(1.0 / alpha) - 1)
gamma = seeing_fwhm / scale
amplitude = 1.0 / math.pi * (alpha - 1) / gamma**2
seeing_model = Moffat2D(amplitude=amplitude,
x_mean=0.0,
y_mean=0.0,
gamma=gamma,
alpha=alpha)
return seeing_model | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator integer call attribute identifier identifier argument_list binary_operator binary_operator integer parenthesized_expression binary_operator float identifier integer expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment identifier binary_operator binary_operator binary_operator float attribute identifier identifier parenthesized_expression binary_operator identifier integer binary_operator identifier integer expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier float keyword_argument identifier float keyword_argument identifier identifier keyword_argument identifier identifier return_statement identifier | Generate a normalized Moffat profile from its FWHM and alpha |
def encode_images_as_png(images):
if tf.executing_eagerly():
for image in images:
yield tf.image.encode_png(image).numpy()
else:
(height, width, channels) = images[0].shape
with tf.Graph().as_default():
image_t = tf.placeholder(dtype=tf.uint8, shape=(height, width, channels))
encoded_image_t = tf.image.encode_png(image_t)
with tf.Session() as sess:
for image in images:
enc_string = sess.run(encoded_image_t, feed_dict={image_t: image})
yield enc_string | module function_definition identifier parameters identifier block if_statement call attribute identifier identifier argument_list block for_statement identifier identifier block expression_statement yield call attribute call attribute attribute identifier identifier identifier argument_list identifier identifier argument_list else_clause block expression_statement assignment tuple_pattern identifier identifier identifier attribute subscript identifier integer identifier with_statement with_clause with_item call attribute call attribute identifier identifier argument_list identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier tuple identifier identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list as_pattern_target identifier block for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier dictionary pair identifier identifier expression_statement yield identifier | Yield images encoded as pngs. |
def validate(collection, onerror: Callable[[str, List], None] = None):
BioCValidator(onerror).validate(collection) | module function_definition identifier parameters identifier typed_default_parameter identifier type generic_type identifier type_parameter type list identifier identifier type none none block expression_statement call attribute call identifier argument_list identifier identifier argument_list identifier | Validate BioC data structure. |
def setup_hob(self):
if self.m.hob is None:
return
hob_out_unit = self.m.hob.iuhobsv
new_hob_out_fname = os.path.join(self.m.model_ws,self.m.get_output_attribute(unit=hob_out_unit))
org_hob_out_fname = os.path.join(self.org_model_ws,self.m.get_output_attribute(unit=hob_out_unit))
if not os.path.exists(org_hob_out_fname):
self.logger.warn("could not find hob out file: {0}...skipping".format(hob_out_fname))
return
shutil.copy2(org_hob_out_fname,new_hob_out_fname)
hob_df = pyemu.gw_utils.modflow_hob_to_instruction_file(new_hob_out_fname)
self.obs_dfs["hob"] = hob_df
self.tmp_files.append(os.path.split(hob_out_fname)) | module function_definition identifier parameters identifier block if_statement comparison_operator attribute attribute identifier identifier identifier none block return_statement expression_statement assignment identifier attribute attribute attribute identifier identifier identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier return_statement expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end identifier expression_statement call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier | setup observations from the MODFLOW HOB package |
def _insert(self, key, records, count):
if key not in self.records:
assert key not in self.counts
self.records[key] = records
self.counts[key] = count
else:
self.records[key] = np.vstack((self.records[key], records))
assert key in self.counts
self.counts[key] += count | module function_definition identifier parameters identifier identifier identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block assert_statement comparison_operator identifier attribute identifier identifier expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement assignment subscript attribute identifier identifier identifier identifier else_clause block expression_statement assignment subscript attribute identifier identifier identifier call attribute identifier identifier argument_list tuple subscript attribute identifier identifier identifier identifier assert_statement comparison_operator identifier attribute identifier identifier expression_statement augmented_assignment subscript attribute identifier identifier identifier identifier | Insert records according to key |
def parse_sam(sam, qual):
for line in sam:
if line.startswith('@'):
continue
line = line.strip().split()
if int(line[4]) == 0 or int(line[4]) < qual:
continue
yield line | module function_definition identifier parameters identifier identifier block for_statement identifier identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block continue_statement expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list if_statement boolean_operator comparison_operator call identifier argument_list subscript identifier integer integer comparison_operator call identifier argument_list subscript identifier integer identifier block continue_statement expression_statement yield identifier | parse sam file and check mapping quality |
def chunkWidgets(self, group):
ui_groups = []
subgroup = []
for index, item in enumerate(group['items']):
if getin(item, ['options', 'full_width'], False):
ui_groups.append(subgroup)
ui_groups.append([item])
subgroup = []
else:
subgroup.append(item)
if len(subgroup) == getin(group, ['options', 'columns'], 2) \
or item == group['items'][-1]:
ui_groups.append(subgroup)
subgroup = []
return ui_groups | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list for_statement pattern_list identifier identifier call identifier argument_list subscript identifier string string_start string_content string_end block if_statement call identifier argument_list identifier list string string_start string_content string_end string string_start string_content string_end false block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list list identifier expression_statement assignment identifier list else_clause block expression_statement call attribute identifier identifier argument_list identifier if_statement boolean_operator comparison_operator call identifier argument_list identifier call identifier argument_list identifier list string string_start string_content string_end string string_start string_content string_end integer line_continuation comparison_operator identifier subscript subscript identifier string string_start string_content string_end unary_operator integer block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier list return_statement identifier | chunk the widgets up into groups based on their sizing hints |
def _check_arguments(self):
if self.argument_checked:
return
assert(self.symbol is not None)
self.argument_checked = True
_check_arguments(self.symbol)
if self.allow_extra_params:
if self.arg_params:
arg_names = set(self.symbol.list_arguments())
self.arg_params = {k : v for k, v in self.arg_params.items()
if k in arg_names}
if self.aux_params:
aux_names = set(self.symbol.list_auxiliary_states())
self.aux_params = {k : v for k, v in self.aux_params.items()
if k in aux_names} | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block return_statement assert_statement parenthesized_expression comparison_operator attribute identifier identifier none expression_statement assignment attribute identifier identifier true expression_statement call identifier argument_list attribute identifier identifier if_statement attribute identifier identifier block if_statement attribute identifier identifier block expression_statement assignment identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list expression_statement assignment attribute identifier identifier dictionary_comprehension pair identifier identifier for_in_clause pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list if_clause comparison_operator identifier identifier if_statement attribute identifier identifier block expression_statement assignment identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list expression_statement assignment attribute identifier identifier dictionary_comprehension pair identifier identifier for_in_clause pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list if_clause comparison_operator identifier identifier | verify the argument of the default symbol and user provided parameters |
def prepare_file(filename):
directory = os.path.join(utils.get_project_root(), "analyzation/")
if not os.path.exists(directory):
os.makedirs(directory)
workfilename = os.path.join(directory, filename)
open(workfilename, 'w').close()
return workfilename | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement call attribute call identifier argument_list identifier string string_start string_content string_end identifier argument_list return_statement identifier | Truncate the file and return the filename. |
def _get_controller_type(self):
if self.node_type == self.NODE_CONTROLLER_ROOT and self.name in self.CONTROLLERS:
return self.name
elif self.parent:
return self.parent.controller_type
else:
return None | module function_definition identifier parameters identifier block if_statement boolean_operator comparison_operator attribute identifier identifier attribute identifier identifier comparison_operator attribute identifier identifier attribute identifier identifier block return_statement attribute identifier identifier elif_clause attribute identifier identifier block return_statement attribute attribute identifier identifier identifier else_clause block return_statement none | Returns the current node's controller type |
def _csr_matrix_indices(S):
m, n = S.shape
for i in range(m):
for j in range(S.indptr[i], S.indptr[i+1]):
row_index, col_index = i, S.indices[j]
yield row_index, col_index | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier attribute identifier identifier for_statement identifier call identifier argument_list identifier block for_statement identifier call identifier argument_list subscript attribute identifier identifier identifier subscript attribute identifier identifier binary_operator identifier integer block expression_statement assignment pattern_list identifier identifier expression_list identifier subscript attribute identifier identifier identifier expression_statement yield expression_list identifier identifier | Generate the indices of nonzero entries of a csr_matrix S |
def arrows_at(self, x, y):
for arrow in self.arrows():
if arrow.collide_point(x, y):
yield arrow | module function_definition identifier parameters identifier identifier identifier block for_statement identifier call attribute identifier identifier argument_list block if_statement call attribute identifier identifier argument_list identifier identifier block expression_statement yield identifier | Iterate over arrows that collide the given point. |
def imeicsum(text):
digs = []
for i in range(14):
v = int(text[i])
if i % 2:
v *= 2
[digs.append(int(x)) for x in str(v)]
chek = 0
valu = sum(digs)
remd = valu % 10
if remd != 0:
chek = 10 - remd
return str(chek) | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list integer block expression_statement assignment identifier call identifier argument_list subscript identifier identifier if_statement binary_operator identifier integer block expression_statement augmented_assignment identifier integer expression_statement list_comprehension call attribute identifier identifier argument_list call identifier argument_list identifier for_in_clause identifier call identifier argument_list identifier expression_statement assignment identifier integer expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier binary_operator identifier integer if_statement comparison_operator identifier integer block expression_statement assignment identifier binary_operator integer identifier return_statement call identifier argument_list identifier | Calculate the imei check byte. |
def normalize_dictionary_values(dictionary):
for key, val in dictionary.iteritems():
if isinstance(val, dict):
dictionary[key] = normalize_dictionary_values(val)
elif isinstance(val, list):
dictionary[key] = list(val)
else:
dictionary[key] = normalize_value(val)
return dictionary | module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement call identifier argument_list identifier identifier block expression_statement assignment subscript identifier identifier call identifier argument_list identifier elif_clause call identifier argument_list identifier identifier block expression_statement assignment subscript identifier identifier call identifier argument_list identifier else_clause block expression_statement assignment subscript identifier identifier call identifier argument_list identifier return_statement identifier | Normalizes the values in a dictionary recursivly. |
def steady_connection(self):
return SteadyPgConnection(self._maxusage, self._setsession, True,
*self._args, **self._kwargs) | module function_definition identifier parameters identifier block return_statement call identifier argument_list attribute identifier identifier attribute identifier identifier true list_splat attribute identifier identifier dictionary_splat attribute identifier identifier | Get a steady, unpooled PostgreSQL connection. |
def redis(self):
if self._redis is None:
self._redis = redis.StrictRedis(host=self.args.redis_host, port=self.args.redis_port)
return self._redis | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier return_statement attribute identifier identifier | Return instance of Redis. |
def example_clinical_data(study_name, environment):
odm = ODM("test system")(
ClinicalData("Mediflex", "DEV")(
SubjectData("MDSOL", "IJS TEST4", transaction_type="Insert")(
StudyEventData("SUBJECT")(
FormData("EN", transaction_type="Update")(
ItemGroupData()(
ItemData("SUBJINIT", "AAA")(
AuditRecord(edit_point=AuditRecord.EDIT_DATA_MANAGEMENT,
used_imputation_method= False,
identifier='X2011',
include_file_oid=False)(
UserRef("isparks"),
LocationRef("MDSOL"),
ReasonForChange("Data Entry Error"),
DateTimeStamp(datetime(2015, 9, 11, 10, 15, 22, 80))
),
MdsolQuery(value="Subject initials should be 2 chars only.", recipient="Site from System",
status=QueryStatusType.Open)
),
ItemData("SUBJID", '001')
)
)
)
)
)
)
return odm | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call call identifier argument_list string string_start string_content string_end argument_list call call identifier argument_list string string_start string_content string_end string string_start string_content string_end argument_list call call identifier argument_list string string_start string_content string_end string string_start string_content string_end keyword_argument identifier string string_start string_content string_end argument_list call call identifier argument_list string string_start string_content string_end argument_list call call identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end argument_list call call identifier argument_list argument_list call call identifier argument_list string string_start string_content string_end string string_start string_content string_end argument_list call call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier false keyword_argument identifier string string_start string_content string_end keyword_argument identifier false argument_list call identifier argument_list string string_start string_content string_end call identifier argument_list string string_start string_content string_end call identifier argument_list string string_start string_content string_end call identifier argument_list call identifier argument_list integer integer integer integer integer integer integer call identifier argument_list keyword_argument identifier string string_start string_content string_end keyword_argument identifier string string_start string_content string_end keyword_argument identifier attribute identifier identifier call identifier argument_list string string_start string_content string_end string string_start string_content string_end return_statement identifier | Test demonstrating building clinical data |
def position_scales(self):
l = [s for s in self
if ('x' in s.aesthetics) or ('y' in s.aesthetics)]
return Scales(l) | module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension identifier for_in_clause identifier identifier if_clause boolean_operator parenthesized_expression comparison_operator string string_start string_content string_end attribute identifier identifier parenthesized_expression comparison_operator string string_start string_content string_end attribute identifier identifier return_statement call identifier argument_list identifier | Return a list of the position scales that are present |
def _get_adj_list_adjacency(self, umis, counts, threshold):
adj_list = {umi: [] for umi in umis}
if len(umis) > 25:
umi_length = len(umis[0])
substr_idx = build_substr_idx(umis, umi_length, threshold)
iter_umi_pairs = iter_nearest_neighbours(umis, substr_idx)
else:
iter_umi_pairs = itertools.combinations(umis, 2)
for umi1, umi2 in iter_umi_pairs:
if edit_distance(umi1, umi2) <= threshold:
adj_list[umi1].append(umi2)
adj_list[umi2].append(umi1)
return adj_list | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier dictionary_comprehension pair identifier list for_in_clause identifier identifier if_statement comparison_operator call identifier argument_list identifier integer block expression_statement assignment identifier call identifier argument_list subscript identifier integer expression_statement assignment identifier call identifier argument_list identifier identifier identifier expression_statement assignment identifier call identifier argument_list identifier identifier else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list identifier integer for_statement pattern_list identifier identifier identifier block if_statement comparison_operator call identifier argument_list identifier identifier identifier block expression_statement call attribute subscript identifier identifier identifier argument_list identifier expression_statement call attribute subscript identifier identifier identifier argument_list identifier return_statement identifier | identify all umis within hamming distance threshold |
def _resume(self):
try:
self._cursor.close()
except PyMongoError:
pass
self._cursor = self._create_cursor() | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list except_clause identifier block pass_statement expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list | Reestablish this change stream after a resumable error. |
def zrem(self, key, member, *members):
return self.execute(b'ZREM', key, member, *members) | module function_definition identifier parameters identifier identifier identifier list_splat_pattern identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier list_splat identifier | Remove one or more members from a sorted set. |
def file_upload_to(self, instance, filename):
ext = filename.split(".")[-1]
filename = "{}.{}".format(uuid.uuid4(), ext)
return os.path.join("document", filename) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end unary_operator integer expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list identifier return_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier | Callable passed to the FileField's upload_to kwarg on Document.file |
def Forget(self, obj):
obj = _get_idstr(obj)
try:
self.memo.remove(obj)
except ValueError:
pass | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list identifier except_clause identifier block pass_statement | Forget we've seen this object. |
def roll(self):
x, y, z, w = self.x, self.y, self.z, self.w
return math.atan2(2*y*w - 2*x*z, 1 - 2*y*y - 2*z*z) | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier identifier expression_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier return_statement call attribute identifier identifier argument_list binary_operator binary_operator binary_operator integer identifier identifier binary_operator binary_operator integer identifier identifier binary_operator binary_operator integer binary_operator binary_operator integer identifier identifier binary_operator binary_operator integer identifier identifier | Calculates the Roll of the Quaternion. |
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