code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def _fixpath(root, base):
return os.path.abspath(os.path.normpath(os.path.join(root, base))) | module function_definition identifier parameters identifier identifier block return_statement call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier identifier | Return absolute, normalized, joined paths |
def dotted(self):
v = str(self.geoid.tract).zfill(6)
return v[0:4] + '.' + v[4:] | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call identifier argument_list attribute attribute identifier identifier identifier identifier argument_list integer return_statement binary_operator binary_operator subscript identifier slice integer integer string string_start string_content string_end subscript identifier slice integer | Return just the tract number, excluding the state and county, in the dotted format |
def uridecode(uristring, encoding='utf-8', errors='strict'):
if not isinstance(uristring, bytes):
uristring = uristring.encode(encoding or 'ascii', errors)
parts = uristring.split(b'%')
result = [parts[0]]
append = result.append
decode = _decoded.get
for s in parts[1:]:
append(decode(s[:2], b'%' + s[:2]))
append(s[2:])
if encoding is not None:
return b''.join(result).decode(encoding, errors)
else:
return b''.join(result) | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end default_parameter identifier string string_start string_content string_end block if_statement not_operator call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list boolean_operator identifier string string_start string_content string_end identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier list subscript identifier integer expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier for_statement identifier subscript identifier slice integer block expression_statement call identifier argument_list call identifier argument_list subscript identifier slice integer binary_operator string string_start string_content string_end subscript identifier slice integer expression_statement call identifier argument_list subscript identifier slice integer if_statement comparison_operator identifier none block return_statement call attribute call attribute string string_start string_end identifier argument_list identifier identifier argument_list identifier identifier else_clause block return_statement call attribute string string_start string_end identifier argument_list identifier | Decode a URI string or string component. |
def _resolve_file_name(source, destination):
number = 1
if os.path.exists(os.path.join(destination, os.path.basename(source) + '.zip')):
while True:
zip_filename = os.path.join(destination, os.path.basename(source) + '_' + str(number) + '.zip')
if not os.path.exists(zip_filename):
break
number = number + 1
else:
zip_filename = os.path.join(destination, os.path.basename(source) + '.zip')
return zip_filename | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier integer if_statement call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier binary_operator call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end block while_statement true block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator binary_operator binary_operator call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end call identifier argument_list identifier string string_start string_content string_end if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block break_statement expression_statement assignment identifier binary_operator identifier integer else_clause block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end return_statement identifier | Create a filename for the destination zip file. |
def ruleName(self):
return _('%s at %s' % (self.room.name, self.room.location.name)) | module function_definition identifier parameters identifier block return_statement call identifier argument_list binary_operator string string_start string_content string_end tuple attribute attribute identifier identifier identifier attribute attribute attribute identifier identifier identifier identifier | overrides from parent class |
def check_cache(cache):
if isinstance(cache, BaseCache):
return cache
elif cache is False:
return DictCache()
elif cache is None:
return DummyCache()
else:
raise ValueError('Provided cache must implement BaseCache') | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block return_statement identifier elif_clause comparison_operator identifier false block return_statement call identifier argument_list elif_clause comparison_operator identifier none block return_statement call identifier argument_list else_clause block raise_statement call identifier argument_list string string_start string_content string_end | check if a cache fits esipy needs or not |
def validate(self):
super(OutputContextVertex, self).validate()
if self.location.field is not None:
raise ValueError(u'Expected location at a vertex, but got: {}'.format(self.location)) | module function_definition identifier parameters identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list if_statement comparison_operator attribute attribute identifier identifier identifier none block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier | Validate that the OutputContextVertex is correctly representable. |
def variablename(var):
s=[tpl[0] for tpl in itertools.ifilter(lambda x: var is x[1], globals().items())]
s=s[0].upper()
return s | module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension subscript identifier integer for_in_clause identifier call attribute identifier identifier argument_list lambda lambda_parameters identifier comparison_operator identifier subscript identifier integer call attribute call identifier argument_list identifier argument_list expression_statement assignment identifier call attribute subscript identifier integer identifier argument_list return_statement identifier | Returns the string of a variable name. |
def legacy_events_view(request):
events = TeacherEvent.objects.all()
event_count = events.count()
paginator = Paginator(events, 100)
page = request.GET.get('page')
try:
events = paginator.page(page)
except PageNotAnInteger:
events = paginator.page(1)
except EmptyPage:
events = paginator.page(paginator.num_pages)
return render_to_response(
'teacher_events.html',
{'page_name': "Legacy Events",
'events': events,
'event_count': event_count,},
context_instance=RequestContext(request)
) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list identifier integer expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list identifier except_clause identifier block expression_statement assignment identifier call attribute identifier identifier argument_list integer except_clause identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier return_statement call identifier argument_list string string_start string_content string_end dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier keyword_argument identifier call identifier argument_list identifier | View to see legacy events. |
def marshal(self, o, use_value_list=False):
if o is None:
return
elif isinstance(o, dict):
if use_value_list:
for k, v in o.items():
o[k] = [v]
return o
elif isinstance(o, six.string_types):
if use_value_list:
return {o: [True]}
else:
return {o: True}
else:
raise TypeError("Marshaller doesn't support given type %s" % type(o)) | module function_definition identifier parameters identifier identifier default_parameter identifier false block if_statement comparison_operator identifier none block return_statement elif_clause call identifier argument_list identifier identifier block if_statement identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment subscript identifier identifier list identifier return_statement identifier elif_clause call identifier argument_list identifier attribute identifier identifier block if_statement identifier block return_statement dictionary pair identifier list true else_clause block return_statement dictionary pair identifier true else_clause block raise_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | Packages the return from a parser for easy use in a rule. |
def _init_count_terms(self, annots):
gonotindag = set()
gocnts = self.gocnts
go2obj = self.go2obj
for terms in annots.values():
allterms = set()
for go_id in terms:
goobj = go2obj.get(go_id, None)
if goobj is not None:
allterms.add(go_id)
allterms |= goobj.get_all_parents()
else:
gonotindag.add(go_id)
for parent in allterms:
gocnts[parent] += 1
if gonotindag:
print("{N} Assc. GO IDs not found in the GODag\n".format(N=len(gonotindag))) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier none if_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list identifier expression_statement augmented_assignment identifier call attribute identifier identifier argument_list else_clause block expression_statement call attribute identifier identifier argument_list identifier for_statement identifier identifier block expression_statement augmented_assignment subscript identifier identifier integer if_statement identifier block expression_statement call identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list keyword_argument identifier call identifier argument_list identifier | Fills in the counts and overall aspect counts. |
def suffix(self):
name = self.name
i = name.rfind('.')
if 0 < i < len(name) - 1:
return name[i:]
else:
return '' | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator integer identifier binary_operator call identifier argument_list identifier integer block return_statement subscript identifier slice identifier else_clause block return_statement string string_start string_end | The final component's last suffix, if any. |
def _GenerateFleetspeakConfig(self, template_dir, rpm_build_dir):
source_config = os.path.join(
template_dir, "fleetspeak",
os.path.basename(
config.CONFIG.Get(
"ClientBuilder.fleetspeak_config_path", context=self.context)))
fleetspeak_service_dir = config.CONFIG.Get(
"ClientBuilder.fleetspeak_service_dir", context=self.context)
dest_config_dir = os.path.join(rpm_build_dir, fleetspeak_service_dir[1:])
utils.EnsureDirExists(dest_config_dir)
dest_config_path = os.path.join(
dest_config_dir,
config.CONFIG.Get(
"Client.fleetspeak_unsigned_config_fname", context=self.context))
self.GenerateFile(
input_filename=source_config, output_filename=dest_config_path) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end keyword_argument identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end keyword_argument identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier subscript identifier slice integer expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier | Generates a Fleetspeak config for GRR. |
def start(self):
self._prepare()
self._disconnector = tornado.ioloop.PeriodicCallback(self._disconnect_hanging_devices, 1000, self._loop)
self._disconnector.start() | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier integer attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Start this gateway agent. |
def config_parser_to_dict(config_parser):
response = {}
for section in config_parser.sections():
for option in config_parser.options(section):
response.setdefault(section, {})[option] = config_parser.get(section, option)
return response | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list identifier block expression_statement assignment subscript call attribute identifier identifier argument_list identifier dictionary identifier call attribute identifier identifier argument_list identifier identifier return_statement identifier | Convert a ConfigParser to a dictionary. |
def __load(self):
if self._text is not None: return
body = self._session.get(self.url).content
root = html.fromstring(body)
self._text = "\n".join((
p_tag.text_content()
for p_tag in root.findall('.//p[@class="ArticleContent"]')
if 'justify' in p_tag.get('style', '')
))
self._photos = [] | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block return_statement expression_statement assignment identifier attribute call attribute attribute identifier identifier identifier argument_list attribute identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier call attribute string string_start string_content escape_sequence string_end identifier argument_list generator_expression call attribute identifier identifier argument_list for_in_clause identifier call attribute identifier identifier argument_list string string_start string_content string_end if_clause comparison_operator string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end expression_statement assignment attribute identifier identifier list | Loads text and photos if they are not cached. |
def interface_direct_csvpath(csvpath):
with open(csvpath) as csvfile:
reader = csv.DictReader(csvfile)
for row in reader:
data_class = row.pop('amaasclass', '')
return interface_direct_class(data_class) | module function_definition identifier parameters identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end return_statement call identifier argument_list identifier | help to direct to the correct interface interacting with DB by csvfile path |
def _get_intf_rb_id(rbridge_id):
intf_rb_id = ET.Element(
'get-ip-interface',
xmlns="urn:brocade.com:mgmt:brocade-interface-ext"
)
if rbridge_id is not None:
rbridge_el = ET.SubElement(intf_rb_id, "rbridge-id")
rbridge_el.text = rbridge_id
return intf_rb_id | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier identifier return_statement identifier | Creates a new Netconf request based on the rbridge_id specifed |
def target(self, project_module):
assert isinstance(project_module, basestring)
if project_module not in self.module2target:
self.module2target[project_module] = \
b2.build.targets.ProjectTarget(project_module, project_module,
self.attribute(project_module, "requirements"))
return self.module2target[project_module] | module function_definition identifier parameters identifier identifier block assert_statement call identifier argument_list identifier identifier if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier line_continuation call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier call attribute identifier identifier argument_list identifier string string_start string_content string_end return_statement subscript attribute identifier identifier identifier | Returns the project target corresponding to the 'project-module'. |
def _parse_var_int_components(buf, signed):
value = 0
sign = 1
while True:
ch = buf.read(1)
if ch == '':
raise IonException('Variable integer under-run')
octet = ord(ch)
if signed:
if octet & _VAR_INT_SIGN_MASK:
sign = -1
value = octet & _VAR_INT_SIGN_VALUE_MASK
signed = False
else:
value <<= _VAR_INT_VALUE_BITS
value |= octet & _VAR_INT_VALUE_MASK
if octet & _VAR_INT_SIGNAL_MASK:
break
return sign, value | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier integer expression_statement assignment identifier integer while_statement true block expression_statement assignment identifier call attribute identifier identifier argument_list integer if_statement comparison_operator identifier string string_start string_end block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier if_statement identifier block if_statement binary_operator identifier identifier block expression_statement assignment identifier unary_operator integer expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment identifier false else_clause block expression_statement augmented_assignment identifier identifier expression_statement augmented_assignment identifier binary_operator identifier identifier if_statement binary_operator identifier identifier block break_statement return_statement expression_list identifier identifier | Parses a ``VarInt`` or ``VarUInt`` field from a file-like object. |
def cli(env, columns, sortby, volume_id):
file_storage_manager = SoftLayer.FileStorageManager(env.client)
legal_volumes = file_storage_manager.get_replication_partners(
volume_id
)
if not legal_volumes:
click.echo("There are no replication partners for the given volume.")
else:
table = formatting.Table(columns.columns)
table.sortby = sortby
for legal_volume in legal_volumes:
table.add_row([value or formatting.blank()
for value in columns.row(legal_volume)])
env.fout(table) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier identifier for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list list_comprehension boolean_operator identifier call attribute identifier identifier argument_list for_in_clause identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | List existing replicant volumes for a file volume. |
def includeme(config):
settings = config.registry.settings
root_package_name = config.root_package.__name__
config.registry.webpack = {
'DEFAULT': WebpackState(settings, root_package_name)
}
for extra_config in aslist(settings.get('webpack.configs', [])):
state = WebpackState(settings, root_package_name, name=extra_config)
config.registry.webpack[extra_config] = state
for state in six.itervalues(config.registry.webpack):
if state.static_view:
config.add_static_view(name=state.static_view_name,
path=state.static_view_path,
cache_max_age=state.cache_max_age)
config.add_request_method(get_webpack, 'webpack') | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment attribute attribute identifier identifier identifier dictionary pair string string_start string_content string_end call identifier argument_list identifier identifier for_statement identifier call identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end list block expression_statement assignment identifier call identifier argument_list identifier identifier keyword_argument identifier identifier expression_statement assignment subscript attribute attribute identifier identifier identifier identifier identifier for_statement identifier call attribute identifier identifier argument_list attribute attribute identifier identifier identifier block if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end | Add pyramid_webpack methods and config to the app |
def show(self, ax:plt.Axes=None, figsize:tuple=(3,3), title:Optional[str]=None, hide_axis:bool=True,
cmap:str='tab20', alpha:float=0.5, **kwargs):
"Show the `ImageSegment` on `ax`."
ax = show_image(self, ax=ax, hide_axis=hide_axis, cmap=cmap, figsize=figsize,
interpolation='nearest', alpha=alpha, vmin=0)
if title: ax.set_title(title) | module function_definition identifier parameters identifier typed_default_parameter identifier type attribute identifier identifier none typed_default_parameter identifier type identifier tuple integer integer typed_default_parameter identifier type generic_type identifier type_parameter type identifier none typed_default_parameter identifier type identifier true typed_default_parameter identifier type identifier string string_start string_content string_end typed_default_parameter identifier type identifier float dictionary_splat_pattern identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier integer if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier | Show the `ImageSegment` on `ax`. |
def aggregate(self, search):
for f, facet in self.facets.items():
agg = facet.get_aggregation()
if isinstance(agg, Bucket):
search.aggs.bucket(f, agg)
elif isinstance(agg, Pipeline):
search.aggs.pipeline(f, agg)
else:
search.aggs.metric(f, agg) | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement call identifier argument_list identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier elif_clause call identifier argument_list identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier | Add aggregations representing the facets selected |
def zSaveFile(self, fileName):
cmd = "SaveFile,{}".format(fileName)
reply = self._sendDDEcommand(cmd)
return int(float(reply.rstrip())) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call identifier argument_list call identifier argument_list call attribute identifier identifier argument_list | Saves the lens currently loaded in the server to a Zemax file |
def feed_interval_get(feed_id, parameters):
'Get adaptive interval between checks for a feed.'
val = cache.get(getkey( T_INTERVAL,
key=feed_interval_key(feed_id, parameters) ))
return val if isinstance(val, tuple) else (val, None) | module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list call identifier argument_list identifier keyword_argument identifier call identifier argument_list identifier identifier return_statement conditional_expression identifier call identifier argument_list identifier identifier tuple identifier none | Get adaptive interval between checks for a feed. |
def tryload_cache(dpath, fname, cfgstr, verbose=None):
try:
return load_cache(dpath, fname, cfgstr, verbose=verbose)
except IOError:
return None | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none block try_statement block return_statement call identifier argument_list identifier identifier identifier keyword_argument identifier identifier except_clause identifier block return_statement none | returns None if cache cannot be loaded |
async def resume(self):
self.logger.debug("resume command")
if not self.state == 'ready':
return
if self.streamer is None:
return
try:
if not self.streamer.is_playing():
play_state = "Streaming" if self.is_live else "Playing"
self.statuslog.info(play_state)
self.streamer.resume()
if self.pause_time is not None:
self.vclient_starttime += (self.vclient.loop.time() - self.pause_time)
self.pause_time = None
except Exception as e:
logger.error(e)
pass | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end if_statement not_operator comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement if_statement comparison_operator attribute identifier identifier none block return_statement try_statement block if_statement not_operator call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier conditional_expression string string_start string_content string_end attribute identifier identifier string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list if_statement comparison_operator attribute identifier identifier none block expression_statement augmented_assignment attribute identifier identifier parenthesized_expression binary_operator call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier none except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier pass_statement | Resumes playback if paused |
def open(self):
if not os.path.exists(self.path):
raise IOError("No such path: {0}".format(self.path))
with open(self.path, "rb") as f:
msg = f.read()
result = chardet.detect(msg)
self.buffer = codecs.open(self.path, "rb", encoding=result['encoding'])
self.at_eof = False | module function_definition identifier parameters identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list attribute identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end keyword_argument identifier subscript identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier false | Open the data file. |
def load_definitions(self):
self.data = dict(json.load(open(self.data_fp))['data'])
self.all_faces = set(self.data.pop("__all__"))
self.locations = set(self.data.keys()) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list subscript call attribute identifier identifier argument_list call identifier argument_list attribute identifier identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment attribute identifier identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list | Load mapping of country names to face ids |
def round_robin(self, x, y, n_keep):
vals = y.unique()
scores = {}
for cls in vals:
scores[cls] = self.rank(x, np.equal(cls, y).astype('Int64'))
scores[cls].reverse()
keepers = set()
while len(keepers) < n_keep:
for cls in vals:
keepers.add(scores[cls].pop()[1])
return list(keepers) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list identifier call attribute call attribute identifier identifier argument_list identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute subscript identifier identifier identifier argument_list expression_statement assignment identifier call identifier argument_list while_statement comparison_operator call identifier argument_list identifier identifier block for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list subscript call attribute subscript identifier identifier identifier argument_list integer return_statement call identifier argument_list identifier | Ensures all classes get representative features, not just those with strong features |
def remove_intersecting(self, division, symm=True):
IntersectRelationship.objects.filter(
from_division=self, to_division=division
).delete()
if symm:
division.remove_intersecting(self, False) | module function_definition identifier parameters identifier identifier default_parameter identifier true block expression_statement call attribute call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier identifier argument_list if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier false | Removes paired relationships between intersecting divisions |
def _auto(direction, name, value, source='auto', convert_to_human=True):
if direction not in ['to', 'from']:
return value
props = property_data_zpool()
if source == 'zfs':
props = property_data_zfs()
elif source == 'auto':
props.update(property_data_zfs())
value_type = props[name]['type'] if name in props else 'str'
if value_type == 'size' and direction == 'to':
return globals()['{}_{}'.format(direction, value_type)](value, convert_to_human)
return globals()['{}_{}'.format(direction, value_type)](value) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier true block if_statement comparison_operator identifier list string string_start string_content string_end string string_start string_content string_end block return_statement identifier expression_statement assignment identifier call identifier argument_list if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list call identifier argument_list expression_statement assignment identifier conditional_expression subscript subscript identifier identifier string string_start string_content string_end comparison_operator identifier identifier string string_start string_content string_end if_statement boolean_operator comparison_operator identifier string string_start string_content string_end comparison_operator identifier string string_start string_content string_end block return_statement call subscript call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier argument_list identifier identifier return_statement call subscript call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier argument_list identifier | Internal magic for from_auto and to_auto |
def open(self, encoding=None):
try:
if IS_GZIPPED_FILE.search(self._filename):
_file = gzip.open(self._filename, 'rb')
else:
if encoding:
_file = io.open(self._filename, 'r', encoding=encoding, errors='replace')
elif self._encoding:
_file = io.open(self._filename, 'r', encoding=self._encoding, errors='replace')
else:
_file = io.open(self._filename, 'r', errors='replace')
except IOError, e:
self._log_warning(str(e))
_file = None
self.close()
return _file | module function_definition identifier parameters identifier default_parameter identifier none block try_statement block if_statement call attribute identifier identifier argument_list attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end else_clause block if_statement identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier string string_start string_content string_end elif_clause attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end keyword_argument identifier attribute identifier identifier keyword_argument identifier string string_start string_content string_end else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end keyword_argument identifier string string_start string_content string_end except_clause identifier identifier block expression_statement call attribute identifier identifier argument_list call identifier argument_list identifier expression_statement assignment identifier none expression_statement call attribute identifier identifier argument_list return_statement identifier | Opens the file with the appropriate call |
def _bsecurate_cli_compare_basis_files(args):
ret = curate.compare_basis_files(args.file1, args.file2, args.readfmt1, args.readfmt2, args.uncontract_general)
if ret:
return "No difference found"
else:
return "DIFFERENCES FOUND. SEE ABOVE" | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier if_statement identifier block return_statement string string_start string_content string_end else_clause block return_statement string string_start string_content string_end | Handles compare-basis-files subcommand |
def flatten(*args):
for arg in args:
if isinstance(arg, collections.Iterable) and not isinstance(arg, (str, bytes)):
yield from flatten(*arg)
else:
yield arg | module function_definition identifier parameters list_splat_pattern identifier block for_statement identifier identifier block if_statement boolean_operator call identifier argument_list identifier attribute identifier identifier not_operator call identifier argument_list identifier tuple identifier identifier block expression_statement yield call identifier argument_list list_splat identifier else_clause block expression_statement yield identifier | Generator that recursively flattens embedded lists, tuples, etc. |
def time_to_number(self, time):
if not isinstance(time, datetime.time):
raise TypeError(time)
return ((time.second / 60.0 + time.minute) / 60.0 + time.hour) / 24.0 | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block raise_statement call identifier argument_list identifier return_statement binary_operator parenthesized_expression binary_operator binary_operator parenthesized_expression binary_operator binary_operator attribute identifier identifier float attribute identifier identifier float attribute identifier identifier float | Converts a time instance to a corresponding float value. |
def _fill_vao(self):
with self.vao:
self.vbos = []
for loc, verts in enumerate(self.arrays):
vbo = VBO(verts)
self.vbos.append(vbo)
self.vao.assign_vertex_attrib_location(vbo, loc) | module function_definition identifier parameters identifier block with_statement with_clause with_item attribute identifier identifier block expression_statement assignment attribute identifier identifier list for_statement pattern_list identifier identifier call identifier argument_list attribute identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier | Put array location in VAO for shader in same order as arrays given to Mesh. |
def validate_config(config, schema=CLUSTER_CONFIG_SCHEMA):
if not isinstance(config, dict):
raise ValueError("Config {} is not a dictionary".format(config))
check_required(config, schema)
check_extraneous(config, schema) | module function_definition identifier parameters identifier default_parameter identifier identifier block if_statement not_operator call identifier argument_list identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call identifier argument_list identifier identifier expression_statement call identifier argument_list identifier identifier | Required Dicts indicate that no extra fields can be introduced. |
def _delete_dir(self):
if not self.auto and os.path.isdir(self.meta.build_path + self.prgnam):
shutil.rmtree(self.meta.build_path + self.prgnam) | module function_definition identifier parameters identifier block if_statement boolean_operator not_operator attribute identifier identifier call attribute attribute identifier identifier identifier argument_list binary_operator attribute attribute identifier identifier identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator attribute attribute identifier identifier identifier attribute identifier identifier | Delete old folder if exists before start build |
def on_replace_scene(self, event: events.ReplaceScene, signal):
self.stop_scene()
self.start_scene(event.new_scene, event.kwargs) | module function_definition identifier parameters identifier typed_parameter identifier type attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier | Replace the running scene with a new one. |
def draw_markers(self):
self._canvas_markers.clear()
for marker in self._markers.values():
self.create_marker(marker["category"], marker["start"], marker["finish"], marker) | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end identifier | Draw all created markers on the TimeLine Canvas |
def _load_project(self, project):
try:
project['md5sum'] = utils.md5string(project['script'])
ret = self.build_module(project, self.env)
self.projects[project['name']] = ret
except Exception as e:
logger.exception("load project %s error", project.get('name', None))
ret = {
'loader': None,
'module': None,
'class': None,
'instance': None,
'exception': e,
'exception_log': traceback.format_exc(),
'info': project,
'load_time': time.time(),
}
self.projects[project['name']] = ret
return False
logger.debug('project: %s updated.', project.get('name', None))
return True | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier expression_statement assignment subscript attribute identifier identifier subscript identifier string string_start string_content string_end identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end none expression_statement assignment identifier dictionary pair string string_start string_content string_end none pair string string_start string_content string_end none pair string string_start string_content string_end none pair string string_start string_content string_end none pair string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list pair string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list expression_statement assignment subscript attribute identifier identifier subscript identifier string string_start string_content string_end identifier return_statement false expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end none return_statement true | Load project into self.projects from project info dict |
def getBlocks(self):
try:
conn = self.dbi.connection()
result = self.buflistblks.execute(conn)
return result
finally:
if conn:
conn.close() | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement identifier finally_clause block if_statement identifier block expression_statement call attribute identifier identifier argument_list | Get the blocks that need to be migrated |
def delete(self, count=1):
if self.cursor_position < len(self.text):
deleted = self.document.text_after_cursor[:count]
self.text = self.text[:self.cursor_position] + \
self.text[self.cursor_position + len(deleted):]
return deleted
else:
return '' | module function_definition identifier parameters identifier default_parameter identifier integer block if_statement comparison_operator attribute identifier identifier call identifier argument_list attribute identifier identifier block expression_statement assignment identifier subscript attribute attribute identifier identifier identifier slice identifier expression_statement assignment attribute identifier identifier binary_operator subscript attribute identifier identifier slice attribute identifier identifier line_continuation subscript attribute identifier identifier slice binary_operator attribute identifier identifier call identifier argument_list identifier return_statement identifier else_clause block return_statement string string_start string_end | Delete specified number of characters and Return the deleted text. |
def node_val_dump(self):
self._flush_node_val()
for (
graph, node, key, branch, turn, tick, value
) in self.sql('node_val_dump'):
yield (
self.unpack(graph),
self.unpack(node),
self.unpack(key),
branch,
turn,
tick,
self.unpack(value)
) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list for_statement tuple_pattern identifier identifier identifier identifier identifier identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement yield tuple call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier identifier identifier identifier call attribute identifier identifier argument_list identifier | Yield the entire contents of the node_val table. |
def space(self):
arg_spaces = [o.space for o in self.matrix.ravel()
if hasattr(o, 'space')]
if len(arg_spaces) == 0:
return TrivialSpace
else:
return ProductSpace.create(*arg_spaces) | module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension attribute identifier identifier for_in_clause identifier call attribute attribute identifier identifier identifier argument_list if_clause call identifier argument_list identifier string string_start string_content string_end if_statement comparison_operator call identifier argument_list identifier integer block return_statement identifier else_clause block return_statement call attribute identifier identifier argument_list list_splat identifier | Combined Hilbert space of all matrix elements. |
def minion_config(opts, vm_):
minion = {
'master': 'salt',
'log_level': 'info',
'hash_type': 'sha256',
}
minion['id'] = vm_['name']
master_finger = salt.config.get_cloud_config_value('master_finger', vm_, opts)
if master_finger is not None:
minion['master_finger'] = master_finger
minion.update(
salt.config.get_cloud_config_value(
'minion', vm_, opts, default={}, search_global=True
)
)
make_master = salt.config.get_cloud_config_value('make_master', vm_, opts)
if 'master' not in minion and make_master is not True:
raise SaltCloudConfigError(
'A master setting was not defined in the minion\'s configuration.'
)
minion.setdefault('grains', {}).update(
salt.config.get_cloud_config_value(
'grains', vm_, opts, default={}, search_global=True
)
)
return minion | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier identifier if_statement comparison_operator identifier none block expression_statement assignment subscript identifier string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier identifier keyword_argument identifier dictionary keyword_argument identifier true expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier identifier if_statement boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator identifier true block raise_statement call identifier argument_list string string_start string_content escape_sequence string_end expression_statement call attribute call attribute identifier identifier argument_list string string_start string_content string_end dictionary identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier identifier keyword_argument identifier dictionary keyword_argument identifier true return_statement identifier | Return a minion's configuration for the provided options and VM |
async def create_turn_endpoint(protocol_factory, server_addr, username, password,
lifetime=600, ssl=False, transport='udp'):
loop = asyncio.get_event_loop()
if transport == 'tcp':
_, inner_protocol = await loop.create_connection(
lambda: TurnClientTcpProtocol(server_addr,
username=username,
password=password,
lifetime=lifetime),
host=server_addr[0],
port=server_addr[1],
ssl=ssl)
else:
_, inner_protocol = await loop.create_datagram_endpoint(
lambda: TurnClientUdpProtocol(server_addr,
username=username,
password=password,
lifetime=lifetime),
remote_addr=server_addr)
protocol = protocol_factory()
transport = TurnTransport(protocol, inner_protocol)
await transport._connect()
return transport, protocol | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier integer default_parameter identifier false default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment pattern_list identifier identifier await call attribute identifier identifier argument_list lambda call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier subscript identifier integer keyword_argument identifier subscript identifier integer keyword_argument identifier identifier else_clause block expression_statement assignment pattern_list identifier identifier await call attribute identifier identifier argument_list lambda call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement await call attribute identifier identifier argument_list return_statement expression_list identifier identifier | Create datagram connection relayed over TURN. |
def _remove_keys_from_dict_with_nonunique_values(self, d, log_fh=None, log_outprefix=None):
value_counts = collections.Counter(d.values())
new_d = {}
writing_log_file = None not in [log_fh, log_outprefix]
for key in d:
if value_counts[d[key]] == 1:
new_d[key] = d[key]
elif writing_log_file:
print(log_outprefix, 'Reject because non-unique:', d[key], sep='\t', file=log_fh)
return new_d | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier dictionary expression_statement assignment identifier comparison_operator none list identifier identifier for_statement identifier identifier block if_statement comparison_operator subscript identifier subscript identifier identifier integer block expression_statement assignment subscript identifier identifier subscript identifier identifier elif_clause identifier block expression_statement call identifier argument_list identifier string string_start string_content string_end subscript identifier identifier keyword_argument identifier string string_start string_content escape_sequence string_end keyword_argument identifier identifier return_statement identifier | Returns a new dictionary, with keys from input dict removed if their value was not unique |
def resp_set_wififirmware(self, resp):
if resp:
self.wifi_firmware_version = float(str(str(resp.version >> 16) + "." + str(resp.version & 0xff)))
self.wifi_firmware_build_timestamp = resp.build | module function_definition identifier parameters identifier identifier block if_statement identifier block expression_statement assignment attribute identifier identifier call identifier argument_list call identifier argument_list binary_operator binary_operator call identifier argument_list binary_operator attribute identifier identifier integer string string_start string_content string_end call identifier argument_list binary_operator attribute identifier identifier integer expression_statement assignment attribute identifier identifier attribute identifier identifier | Default callback for get_wififirmware |
def _put_text(irods_path, text):
with tempfile.NamedTemporaryFile() as fh:
fpath = fh.name
try:
text = unicode(text, "utf-8")
except (NameError, TypeError):
pass
fh.write(text.encode("utf-8"))
fh.flush()
cmd = CommandWrapper([
"iput",
"-f",
fpath,
irods_path
])
cmd()
assert not os.path.isfile(fpath) | module function_definition identifier parameters identifier identifier block with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list as_pattern_target identifier block expression_statement assignment identifier attribute identifier identifier try_statement block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end except_clause tuple identifier identifier block pass_statement expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list list string string_start string_content string_end string string_start string_content string_end identifier identifier expression_statement call identifier argument_list assert_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier | Put raw text into iRODS. |
def angle(x, y):
return arccos(dot(x, y)/(norm(x)*norm(y)))*180./pi | module function_definition identifier parameters identifier identifier block return_statement binary_operator binary_operator call identifier argument_list binary_operator call identifier argument_list identifier identifier parenthesized_expression binary_operator call identifier argument_list identifier call identifier argument_list identifier float identifier | Return the angle between vectors a and b in degrees. |
def do_upload(post_data, callback=None):
encoder = MultipartEncoder(post_data)
monitor = MultipartEncoderMonitor(encoder, callback)
headers = {'User-Agent': USER_AGENT, 'Content-Type': monitor.content_type}
response = post(API_URL, data=monitor, headers=headers)
check_response(response)
return response.json()[0] | module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier expression_statement call identifier argument_list identifier return_statement subscript call attribute identifier identifier argument_list integer | does the actual upload also sets and generates the user agent string |
def _c0(self):
"the logarithm of normalizing constant in pdf"
h_df = self.df / 2
p, S = self._p, self.S
return h_df * (logdet(S) + p * logtwo) + lpgamma(p, h_df) | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier binary_operator attribute identifier identifier integer expression_statement assignment pattern_list identifier identifier expression_list attribute identifier identifier attribute identifier identifier return_statement binary_operator binary_operator identifier parenthesized_expression binary_operator call identifier argument_list identifier binary_operator identifier identifier call identifier argument_list identifier identifier | the logarithm of normalizing constant in pdf |
def _J(self):
pd = self.particle_distribution(self._Ep * u.GeV)
return pd.to("1/GeV").value | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator attribute identifier identifier attribute identifier identifier return_statement attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier | Particles per unit proton energy in particles per GeV |
def qs_delete(self, *keys):
query = self.query.copy()
for key in set(keys):
try:
del query[key]
except KeyError:
pass
return self._copy(query=query) | module function_definition identifier parameters identifier list_splat_pattern identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list for_statement identifier call identifier argument_list identifier block try_statement block delete_statement subscript identifier identifier except_clause identifier block pass_statement return_statement call attribute identifier identifier argument_list keyword_argument identifier identifier | Delete value from QuerySet MultiDict |
def select_ip_version(host, port):
if ':' in host and hasattr(socket, 'AF_INET6'):
return socket.AF_INET6
return socket.AF_INET | module function_definition identifier parameters identifier identifier block if_statement boolean_operator comparison_operator string string_start string_content string_end identifier call identifier argument_list identifier string string_start string_content string_end block return_statement attribute identifier identifier return_statement attribute identifier identifier | Returns AF_INET4 or AF_INET6 depending on where to connect to. |
def _set_tick_lines_visibility(ax, visible=True):
for i, thisAxis in enumerate((ax.get_xaxis(), ax.get_yaxis())):
for thisItem in thisAxis.get_ticklines():
if isinstance(visible, list):
thisItem.set_visible(visible[i])
else:
thisItem.set_visible(visible) | module function_definition identifier parameters identifier default_parameter identifier true block for_statement pattern_list identifier identifier call identifier argument_list tuple call attribute identifier identifier argument_list call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list subscript identifier identifier else_clause block expression_statement call attribute identifier identifier argument_list identifier | Set the visibility of the tick lines of the requested axis. |
def _raise_on_unsupported_token(self, request):
if (request.token_type_hint and
request.token_type_hint in self.valid_token_types and
request.token_type_hint not in self.supported_token_types):
raise UnsupportedTokenTypeError(request=request) | module function_definition identifier parameters identifier identifier block if_statement parenthesized_expression boolean_operator boolean_operator attribute identifier identifier comparison_operator attribute identifier identifier attribute identifier identifier comparison_operator attribute identifier identifier attribute identifier identifier block raise_statement call identifier argument_list keyword_argument identifier identifier | Raise on unsupported tokens. |
def id_unique(dict_id, name, lineno):
if dict_id in name_dict:
global error_occurred
error_occurred = True
print(
"ERROR - {0:s} definition {1:s} at line {2:d} conflicts with {3:s}"
.format(name, dict_id, lineno, name_dict[dict_id]))
return False
else:
return True | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier identifier block global_statement identifier expression_statement assignment identifier true expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier identifier subscript identifier identifier return_statement false else_clause block return_statement true | Returns True if dict_id not already used. Otherwise, invokes error |
def function(fname):
def _f(func):
class WrapFunction(Function):
name = fname
def __call__(self, *args, **kwargs):
return func(*args, **kwargs)
return WrapFunction
return _f | module function_definition identifier parameters identifier block function_definition identifier parameters identifier block class_definition identifier argument_list identifier block expression_statement assignment identifier identifier function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block return_statement call identifier argument_list list_splat identifier dictionary_splat identifier return_statement identifier return_statement identifier | Make a function to Function class |
def _create_application(self):
return Application(
input=self.input,
output=self.output,
layout=self.ptpython_layout.layout,
key_bindings=merge_key_bindings([
load_python_bindings(self),
load_auto_suggest_bindings(),
load_sidebar_bindings(self),
load_confirm_exit_bindings(self),
ConditionalKeyBindings(
load_open_in_editor_bindings(),
Condition(lambda: self.enable_open_in_editor)),
ConditionalKeyBindings(
self.extra_key_bindings,
Condition(lambda: not self.show_sidebar))
]),
color_depth=lambda: self.color_depth,
paste_mode=Condition(lambda: self.paste_mode),
mouse_support=Condition(lambda: self.enable_mouse_support),
style=DynamicStyle(lambda: self._current_style),
style_transformation=self.style_transformation,
include_default_pygments_style=False,
reverse_vi_search_direction=True) | module function_definition identifier parameters identifier block return_statement call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier call identifier argument_list list call identifier argument_list identifier call identifier argument_list call identifier argument_list identifier call identifier argument_list identifier call identifier argument_list call identifier argument_list call identifier argument_list lambda attribute identifier identifier call identifier argument_list attribute identifier identifier call identifier argument_list lambda not_operator attribute identifier identifier keyword_argument identifier lambda attribute identifier identifier keyword_argument identifier call identifier argument_list lambda attribute identifier identifier keyword_argument identifier call identifier argument_list lambda attribute identifier identifier keyword_argument identifier call identifier argument_list lambda attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier false keyword_argument identifier true | Create an `Application` instance. |
def ScheduleSystemCronJobs(names=None):
errors = []
disabled_classes = config.CONFIG["Cron.disabled_cron_jobs"]
for name in disabled_classes:
try:
cls = registry.SystemCronJobRegistry.CronJobClassByName(name)
except ValueError:
errors.append("Cron job not found: %s." % name)
continue
if names is None:
names = iterkeys(registry.SystemCronJobRegistry.SYSTEM_CRON_REGISTRY)
for name in names:
cls = registry.SystemCronJobRegistry.CronJobClassByName(name)
enabled = cls.enabled and name not in disabled_classes
system = rdf_cronjobs.CronJobAction.ActionType.SYSTEM_CRON_ACTION
args = rdf_cronjobs.CronJobAction(
action_type=system,
system_cron_action=rdf_cronjobs.SystemCronAction(job_class_name=name))
job = rdf_cronjobs.CronJob(
cron_job_id=name,
args=args,
enabled=enabled,
frequency=cls.frequency,
lifetime=cls.lifetime,
allow_overruns=cls.allow_overruns)
data_store.REL_DB.WriteCronJob(job)
if errors:
raise ValueError(
"Error(s) while parsing Cron.disabled_cron_jobs: %s" % errors) | module function_definition identifier parameters default_parameter identifier none block expression_statement assignment identifier list expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end for_statement identifier identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier except_clause identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier continue_statement if_statement comparison_operator identifier none block expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier for_statement identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier boolean_operator attribute identifier identifier comparison_operator identifier identifier expression_statement assignment identifier attribute attribute attribute identifier identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier | Schedules all system cron jobs. |
def rect(self):
if self._w3c:
return self._execute(Command.GET_ELEMENT_RECT)['value']
else:
rect = self.size.copy()
rect.update(self.location)
return rect | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block return_statement subscript call attribute identifier identifier argument_list attribute identifier identifier string string_start string_content string_end else_clause block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement identifier | A dictionary with the size and location of the element. |
def hashVariantAnnotation(cls, gaVariant, gaVariantAnnotation):
treffs = [treff.id for treff in gaVariantAnnotation.transcript_effects]
return hashlib.md5(
"{}\t{}\t{}\t".format(
gaVariant.reference_bases, tuple(gaVariant.alternate_bases),
treffs)
).hexdigest() | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list_comprehension attribute identifier identifier for_in_clause identifier attribute identifier identifier return_statement call attribute call attribute identifier identifier argument_list call attribute string string_start string_content escape_sequence escape_sequence escape_sequence string_end identifier argument_list attribute identifier identifier call identifier argument_list attribute identifier identifier identifier identifier argument_list | Produces an MD5 hash of the gaVariant and gaVariantAnnotation objects |
def goForward(self):
if self._slideshow.currentIndex() == self._slideshow.count() - 1:
self.finished.emit()
else:
self._slideshow.slideInNext() | module function_definition identifier parameters identifier block if_statement comparison_operator call attribute attribute identifier identifier identifier argument_list binary_operator call attribute attribute identifier identifier identifier argument_list integer block expression_statement call attribute attribute identifier identifier identifier argument_list else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list | Moves to the next slide or finishes the walkthrough. |
def sweFixedStar(star, jd):
sweList = swisseph.fixstar_ut(star, jd)
mag = swisseph.fixstar_mag(star)
return {
'id': star,
'mag': mag,
'lon': sweList[0],
'lat': sweList[1]
} | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end subscript identifier integer pair string string_start string_content string_end subscript identifier integer | Returns a fixed star from the Ephemeris. |
def lgdistplot(self,dict_to_use,orientation):
data = dict()
for s_name in dict_to_use:
try:
data[s_name] = {int(d): int (dict_to_use[s_name][d]) for d in dict_to_use[s_name]}
except KeyError:
pass
if len(data) == 0:
log.debug('No valid data for forward read lgdist input!')
return None
config = {
'id': 'length-distribution-{}'.format(orientation),
'title': 'DamageProfiler: Read length distribution: {} '.format(orientation),
'ylab': 'Number of reads',
'xlab': 'Readlength (bp)',
'xDecimals': False,
'tt_label': '{point.y} reads of length {point.x}',
'ymin': 0,
'xmin': 0
}
return linegraph.plot(data,config) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block try_statement block expression_statement assignment subscript identifier identifier dictionary_comprehension pair call identifier argument_list identifier call identifier argument_list subscript subscript identifier identifier identifier for_in_clause identifier subscript identifier identifier except_clause identifier block pass_statement if_statement comparison_operator call identifier argument_list identifier integer block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement none expression_statement assignment identifier dictionary pair string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list identifier pair string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list identifier pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end false pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end integer pair string string_start string_content string_end integer return_statement call attribute identifier identifier argument_list identifier identifier | Generate a read length distribution plot |
def shell(cmd, **kwargs):
logger.debug("$ %s", cmd)
return subprocess.check_output(cmd, shell=True, **kwargs) | module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier true dictionary_splat identifier | Execute cmd, check exit code, return stdout |
def hidden_cursor():
if sys.stdout.isatty():
_LOGGER.debug('Hiding cursor.')
print('\x1B[?25l', end='')
sys.stdout.flush()
try:
yield
finally:
if sys.stdout.isatty():
_LOGGER.debug('Showing cursor.')
print('\n\x1B[?25h', end='')
sys.stdout.flush() | module function_definition identifier parameters block if_statement call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list string string_start string_content escape_sequence string_end keyword_argument identifier string string_start string_end expression_statement call attribute attribute identifier identifier identifier argument_list try_statement block expression_statement yield finally_clause block if_statement call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list string string_start string_content escape_sequence escape_sequence string_end keyword_argument identifier string string_start string_end expression_statement call attribute attribute identifier identifier identifier argument_list | Temporarily hide the terminal cursor. |
def name(self):
self.open()
name = lvm_lv_get_name(self.__lvh)
self.close()
return name | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list return_statement identifier | Returns the logical volume name. |
def create (netParams=None, simConfig=None, output=False):
from .. import sim
import __main__ as top
if not netParams: netParams = top.netParams
if not simConfig: simConfig = top.simConfig
sim.initialize(netParams, simConfig)
pops = sim.net.createPops()
cells = sim.net.createCells()
conns = sim.net.connectCells()
stims = sim.net.addStims()
rxd = sim.net.addRxD()
simData = sim.setupRecording()
if output: return (pops, cells, conns, rxd, stims, simData) | module function_definition identifier parameters default_parameter identifier none default_parameter identifier none default_parameter identifier false block import_from_statement relative_import import_prefix dotted_name identifier import_statement aliased_import dotted_name identifier identifier if_statement not_operator identifier block expression_statement assignment identifier attribute identifier identifier if_statement not_operator identifier block expression_statement assignment identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list if_statement identifier block return_statement tuple identifier identifier identifier identifier identifier identifier | Sequence of commands to create network |
def exec_file(filename, return_locals=False, is_deploy_code=False):
if filename not in PYTHON_CODES:
with open(filename, 'r') as f:
code = f.read()
code = compile(code, filename, 'exec')
PYTHON_CODES[filename] = code
data = {
'__file__': filename,
'state': pseudo_state,
}
exec(PYTHON_CODES[filename], data)
return data | module function_definition identifier parameters identifier default_parameter identifier false default_parameter identifier false block if_statement comparison_operator identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list identifier identifier string string_start string_content string_end expression_statement assignment subscript identifier identifier identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier expression_statement call identifier argument_list subscript identifier identifier identifier return_statement identifier | Execute a Python file and optionally return it's attributes as a dict. |
def css_text(self, path, default=NULL, smart=False, normalize_space=True):
try:
return get_node_text(self.css_one(path), smart=smart,
normalize_space=normalize_space)
except IndexError:
if default is NULL:
raise
else:
return default | module function_definition identifier parameters identifier identifier default_parameter identifier identifier default_parameter identifier false default_parameter identifier true block try_statement block return_statement call identifier argument_list call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier except_clause identifier block if_statement comparison_operator identifier identifier block raise_statement else_clause block return_statement identifier | Get normalized text of node which matches the css path. |
def sentence_iterator(self, file_path: str) -> Iterator[OntonotesSentence]:
for document in self.dataset_document_iterator(file_path):
for sentence in document:
yield sentence | module function_definition identifier parameters identifier typed_parameter identifier type identifier type generic_type identifier type_parameter type identifier block for_statement identifier call attribute identifier identifier argument_list identifier block for_statement identifier identifier block expression_statement yield identifier | An iterator over the sentences in an individual CONLL formatted file. |
def _py_ctype(parameter):
ctype = parameter.ctype
if ctype is None:
raise ValueError("Can't bind ctypes py_parameter for parameter"
" {}".format(parameter.definition()))
return ctype.lower() | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block raise_statement call identifier argument_list call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list | Returns the ctypes type name for the specified fortran parameter. |
def add_device_override(self, addr, cat, subcat, firmware=None):
self.plm.devices.add_override(addr, 'cat', cat)
self.plm.devices.add_override(addr, 'subcat', subcat)
if firmware:
self.plm.devices.add_override(addr, 'firmware', firmware) | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier string string_start string_content string_end identifier expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier string string_start string_content string_end identifier if_statement identifier block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier string string_start string_content string_end identifier | Add a device override to the PLM. |
async def states(self, country: str) -> list:
data = await self._request(
'get', 'states', params={'country': country})
return [d['state'] for d in data['data']] | module function_definition identifier parameters identifier typed_parameter identifier type identifier type identifier block expression_statement assignment identifier await call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end keyword_argument identifier dictionary pair string string_start string_content string_end identifier return_statement list_comprehension subscript identifier string string_start string_content string_end for_in_clause identifier subscript identifier string string_start string_content string_end | Return a list of supported states in a country. |
def assert_is_not_substring(substring, subject, message=None, extra=None):
assert (
(subject is not None)
and (substring is not None)
and (subject.find(substring) == -1)
), _assert_fail_message(message, substring, subject, "is in", extra) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none block assert_statement parenthesized_expression boolean_operator boolean_operator parenthesized_expression comparison_operator identifier none parenthesized_expression comparison_operator identifier none parenthesized_expression comparison_operator call attribute identifier identifier argument_list identifier unary_operator integer call identifier argument_list identifier identifier identifier string string_start string_content string_end identifier | Raises an AssertionError if substring is a substring of subject. |
def put_on_top(self, request, queryset):
queryset.update(publication_date=timezone.now())
self.ping_directories(request, queryset, messages=False)
self.message_user(request, _(
'The selected entries are now set at the current date.')) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier identifier keyword_argument identifier false expression_statement call attribute identifier identifier argument_list identifier call identifier argument_list string string_start string_content string_end | Put the selected entries on top at the current date. |
def merge_range_pairs(prs):
new_prs = []
sprs = [sorted(p) for p in prs]
sprs = sorted(sprs)
merged = False
x = 0
while x < len(sprs):
newx = x + 1
new_pair = list(sprs[x])
for y in range(x + 1, len(sprs)):
if new_pair[0] <= sprs[y][0] - 1 <= new_pair[1]:
new_pair[0] = min(new_pair[0], sprs[y][0])
new_pair[1] = max(new_pair[1], sprs[y][1])
newx = y + 1
if new_pair not in new_prs:
new_prs.append(new_pair)
x = newx
return new_prs | module function_definition identifier parameters identifier block expression_statement assignment identifier list expression_statement assignment identifier list_comprehension call identifier argument_list identifier for_in_clause identifier identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier false expression_statement assignment identifier integer while_statement comparison_operator identifier call identifier argument_list identifier block expression_statement assignment identifier binary_operator identifier integer expression_statement assignment identifier call identifier argument_list subscript identifier identifier for_statement identifier call identifier argument_list binary_operator identifier integer call identifier argument_list identifier block if_statement comparison_operator subscript identifier integer binary_operator subscript subscript identifier identifier integer integer subscript identifier integer block expression_statement assignment subscript identifier integer call identifier argument_list subscript identifier integer subscript subscript identifier identifier integer expression_statement assignment subscript identifier integer call identifier argument_list subscript identifier integer subscript subscript identifier identifier integer expression_statement assignment identifier binary_operator identifier integer if_statement comparison_operator identifier identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier identifier return_statement identifier | Takes in a list of pairs specifying ranges and returns a sorted list of merged, sorted ranges. |
def parse_jellyfish_data(self, f):
histogram = {}
occurence = 0
for line in f['f']:
line = line.rstrip('\n')
occurence = int(line.split(" ")[0])
count = int(line.split(" ")[1])
histogram[occurence] = occurence*count
del histogram[occurence]
self.max_key = max(histogram, key=histogram.get)
self.jellyfish_max_x = max(self.jellyfish_max_x, self.max_key)
if len(histogram) > 0:
if f['s_name'] in self.jellyfish_data:
log.debug("Duplicate sample name found! Overwriting: {}".format(f['s_name']))
self.add_data_source(f)
self.jellyfish_data[f['s_name']] = histogram | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary expression_statement assignment identifier integer for_statement identifier subscript identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement assignment identifier call identifier argument_list subscript call attribute identifier identifier argument_list string string_start string_content string_end integer expression_statement assignment identifier call identifier argument_list subscript call attribute identifier identifier argument_list string string_start string_content string_end integer expression_statement assignment subscript identifier identifier binary_operator identifier identifier delete_statement subscript identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list identifier keyword_argument identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier if_statement comparison_operator call identifier argument_list identifier integer block if_statement comparison_operator subscript identifier string string_start string_content string_end attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment subscript attribute identifier identifier subscript identifier string string_start string_content string_end identifier | Go through the hist file and memorise it |
def sort_snps(snps):
sorted_list = sorted(snps["chrom"].unique(), key=_natural_sort_key)
if "PAR" in sorted_list:
sorted_list.remove("PAR")
sorted_list.append("PAR")
if "MT" in sorted_list:
sorted_list.remove("MT")
sorted_list.append("MT")
snps["chrom"] = snps["chrom"].astype(
CategoricalDtype(categories=sorted_list, ordered=True)
)
snps = snps.sort_values(["chrom", "pos"])
snps["chrom"] = snps["chrom"].astype(object)
return snps | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list call attribute subscript identifier string string_start string_content string_end identifier argument_list keyword_argument identifier identifier if_statement comparison_operator string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end call attribute subscript identifier string string_start string_content string_end identifier argument_list call identifier argument_list keyword_argument identifier identifier keyword_argument identifier true expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end call attribute subscript identifier string string_start string_content string_end identifier argument_list identifier return_statement identifier | Sort SNPs based on ordered chromosome list and position. |
def LogMsg(msg):
global headerlogged
if headerlogged == 0:
print("{0:<8} {1:<90} {2}".format(
"Time",
"MainThread",
"UpdateSNMPObjsThread"
))
print("{0:-^120}".format("-"))
headerlogged = 1
threadname = threading.currentThread().name
funcname = sys._getframe(1).f_code.co_name
if funcname == "<module>":
funcname = "Main code path"
elif funcname == "LogNetSnmpMsg":
funcname = "net-snmp code"
else:
funcname = "{0}()".format(funcname)
if threadname == "MainThread":
logmsg = "{0} {1:<112.112}".format(
time.strftime("%T", time.localtime(time.time())),
"{0}: {1}".format(funcname, msg)
)
else:
logmsg = "{0} {1:>112.112}".format(
time.strftime("%T", time.localtime(time.time())),
"{0}: {1}".format(funcname, msg)
)
print(logmsg) | module function_definition identifier parameters identifier block global_statement identifier if_statement comparison_operator identifier integer block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list string string_start string_content string_end expression_statement assignment identifier integer expression_statement assignment identifier attribute call attribute identifier identifier argument_list identifier expression_statement assignment identifier attribute attribute call attribute identifier identifier argument_list integer identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end else_clause block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier else_clause block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement call identifier argument_list identifier | Writes a formatted log message with a timestamp to stdout. |
def create_admin(app, appbuilder, username, firstname, lastname, email, password):
auth_type = {
c.AUTH_DB: "Database Authentications",
c.AUTH_OID: "OpenID Authentication",
c.AUTH_LDAP: "LDAP Authentication",
c.AUTH_REMOTE_USER: "WebServer REMOTE_USER Authentication",
c.AUTH_OAUTH: "OAuth Authentication",
}
_appbuilder = import_application(app, appbuilder)
click.echo(
click.style(
"Recognized {0}.".format(
auth_type.get(_appbuilder.sm.auth_type, "No Auth method")
),
fg="green",
)
)
role_admin = _appbuilder.sm.find_role(_appbuilder.sm.auth_role_admin)
user = _appbuilder.sm.add_user(
username, firstname, lastname, email, role_admin, password
)
if user:
click.echo(click.style("Admin User {0} created.".format(username), fg="green"))
else:
click.echo(click.style("No user created an error occured", fg="red")) | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier dictionary pair attribute identifier identifier string string_start string_content string_end pair attribute identifier identifier string string_start string_content string_end pair attribute identifier identifier string string_start string_content string_end pair attribute identifier identifier string string_start string_content string_end pair attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list attribute attribute identifier identifier identifier string string_start string_content string_end keyword_argument identifier string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier identifier identifier identifier identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier string string_start string_content string_end else_clause block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end | Creates an admin user |
def segments_to_numpy(segments):
segments = numpy.array(segments, dtype=SEGMENT_DATATYPE, ndmin=2)
segments = segments if SEGMENTS_DIRECTION == 0 else numpy.transpose(segments)
return segments | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier integer expression_statement assignment identifier conditional_expression identifier comparison_operator identifier integer call attribute identifier identifier argument_list identifier return_statement identifier | given a list of 4-element tuples, transforms it into a numpy array |
def print_recipe(recipe):
print(colors.yellow("\n{0}".format(recipe['name'])))
print " description: {0}".format(recipe['description'])
print " version: {0}".format(recipe['version'])
print " dependencies: {0}".format(", ".join(recipe['dependencies']))
print " attributes: {0}".format(", ".join(recipe['attributes'])) | module function_definition identifier parameters identifier block expression_statement call identifier argument_list call attribute identifier identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list subscript identifier string string_start string_content string_end print_statement call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end print_statement call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end print_statement call attribute string string_start string_content string_end identifier argument_list call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end print_statement call attribute string string_start string_content string_end identifier argument_list call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end | Pretty prints the given recipe |
def deviator_stress(self):
if not self.is_symmetric:
raise warnings.warn("The stress tensor is not symmetric, "
"so deviator stress will not be either")
return self - self.mean_stress*np.eye(3) | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block raise_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end return_statement binary_operator identifier binary_operator attribute identifier identifier call attribute identifier identifier argument_list integer | returns the deviatoric component of the stress |
def _welch_anova(self, dv=None, between=None, export_filename=None):
aov = welch_anova(data=self, dv=dv, between=between,
export_filename=export_filename)
return aov | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier return_statement identifier | Return one-way Welch ANOVA. |
def upd_doc(self, doc, index_update=True, label_guesser_update=True):
if not self.index_writer and index_update:
self.index_writer = self.index.writer()
if not self.label_guesser_updater and label_guesser_update:
self.label_guesser_updater = self.label_guesser.get_updater()
logger.info("Updating modified doc: %s" % doc)
if index_update:
self._update_doc_in_index(self.index_writer, doc)
if label_guesser_update:
self.label_guesser_updater.upd_doc(doc) | module function_definition identifier parameters identifier identifier default_parameter identifier true default_parameter identifier true block if_statement boolean_operator not_operator attribute identifier identifier identifier block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list if_statement boolean_operator not_operator attribute identifier identifier identifier block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier identifier if_statement identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Update a document in the index |
def _get_dopants(substitutions, num_dopants, match_oxi_sign):
n_type = [pred for pred in substitutions
if pred['dopant_species'].oxi_state >
pred['original_species'].oxi_state
and (not match_oxi_sign or
np.sign(pred['dopant_species'].oxi_state) ==
np.sign(pred['original_species'].oxi_state))]
p_type = [pred for pred in substitutions
if pred['dopant_species'].oxi_state <
pred['original_species'].oxi_state
and (not match_oxi_sign or
np.sign(pred['dopant_species'].oxi_state) ==
np.sign(pred['original_species'].oxi_state))]
return {'n_type': n_type[:num_dopants], 'p_type': p_type[:num_dopants]} | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list_comprehension identifier for_in_clause identifier identifier if_clause boolean_operator comparison_operator attribute subscript identifier string string_start string_content string_end identifier attribute subscript identifier string string_start string_content string_end identifier parenthesized_expression boolean_operator not_operator identifier comparison_operator call attribute identifier identifier argument_list attribute subscript identifier string string_start string_content string_end identifier call attribute identifier identifier argument_list attribute subscript identifier string string_start string_content string_end identifier expression_statement assignment identifier list_comprehension identifier for_in_clause identifier identifier if_clause boolean_operator comparison_operator attribute subscript identifier string string_start string_content string_end identifier attribute subscript identifier string string_start string_content string_end identifier parenthesized_expression boolean_operator not_operator identifier comparison_operator call attribute identifier identifier argument_list attribute subscript identifier string string_start string_content string_end identifier call attribute identifier identifier argument_list attribute subscript identifier string string_start string_content string_end identifier return_statement dictionary pair string string_start string_content string_end subscript identifier slice identifier pair string string_start string_content string_end subscript identifier slice identifier | Utility method to get n- and p-type dopants from a list of substitutions. |
def parse(self, output):
output = self._get_lines_with_stems(output)
words = self._make_unique(output)
return self._parse_for_simple_stems(words) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier | Find stems for a given text. |
def api_url(self):
return pathjoin(Bin.path, self.name, url=self.service.url) | module function_definition identifier parameters identifier block return_statement call identifier argument_list attribute identifier identifier attribute identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier | return the api url of self |
def save(self):
if self.parent.buffered:
query =
query = query % (self.identifier.n3(),
self.graph.serialize(format='nt'))
self.parent.graph.update(query)
self.flush()
else:
self.meta.generate() | module function_definition identifier parameters identifier block if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier assignment identifier binary_operator identifier tuple call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list keyword_argument identifier string string_start string_content string_end expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list | Transfer the statements in this context over to the main store. |
def _load_view(self, template_engine_name, template_dir):
file_name = template_engine_name.lower()
class_name = "{}View".format(template_engine_name.title())
try:
view_module = import_module("rails.views.{}".format(file_name))
except ImportError:
raise Exception("Template engine '{}' not found in 'rails.views'".format(file_name))
view_class = getattr(view_module, class_name)
return view_class(template_dir) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list try_statement block expression_statement assignment identifier call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier except_clause identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier identifier return_statement call identifier argument_list identifier | Load view by name and return an instance. |
def active_tcp():
ret = {}
for statf in ['/proc/net/tcp', '/proc/net/tcp6']:
if os.path.isfile(statf):
with salt.utils.files.fopen(statf, 'rb') as fp_:
for line in fp_:
line = salt.utils.stringutils.to_unicode(line)
if line.strip().startswith('sl'):
continue
iret = _parse_tcp_line(line)
sl = next(iter(iret))
if iret[sl]['state'] == 1:
del iret[sl]['state']
ret[len(ret)] = iret[sl]
return ret | module function_definition identifier parameters block expression_statement assignment identifier dictionary for_statement identifier list string string_start string_content string_end string string_start string_content string_end block if_statement call attribute attribute identifier identifier identifier argument_list identifier block with_statement with_clause with_item as_pattern call attribute attribute attribute identifier identifier identifier identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block for_statement identifier identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list identifier if_statement call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content string_end block continue_statement expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list call identifier argument_list identifier if_statement comparison_operator subscript subscript identifier identifier string string_start string_content string_end integer block delete_statement subscript subscript identifier identifier string string_start string_content string_end expression_statement assignment subscript identifier call identifier argument_list identifier subscript identifier identifier return_statement identifier | Return a dict describing all active tcp connections as quickly as possible |
def add_update_callback(self, callback, device):
self._update_callbacks.append([callback, device])
_LOGGER.debug('Added update callback to %s on %s', callback, device) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list list identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier | Register as callback for when a matching device changes. |
def collapse_umi(in_file):
keep = defaultdict(dict)
with open_fastq(in_file) as handle:
for line in handle:
if line.startswith("@"):
m = re.search('UMI_([ATGC]*)', line.strip())
umis = m.group(0)
seq = handle.next().strip()
handle.next()
qual = handle.next().strip()
if (umis, seq) in keep:
keep[(umis, seq)][1].update(qual)
keep[(umis, seq)][0].update(seq)
else:
keep[(umis, seq)] = [umi(seq), quality(qual)]
logger.info("Sequences loaded: %s" % len(keep))
return keep | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block for_statement identifier identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list integer expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list if_statement comparison_operator tuple identifier identifier identifier block expression_statement call attribute subscript subscript identifier tuple identifier identifier integer identifier argument_list identifier expression_statement call attribute subscript subscript identifier tuple identifier identifier integer identifier argument_list identifier else_clause block expression_statement assignment subscript identifier tuple identifier identifier list call identifier argument_list identifier call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier return_statement identifier | collapse reads using UMI tags |
def env(self):
from copy import copy
env = copy(self.doc.env)
assert env is not None, 'Got a null execution context'
env.update(self._envvar_env)
env.update(self.all_props)
return env | module function_definition identifier parameters identifier block import_from_statement dotted_name identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier assert_statement comparison_operator identifier none string string_start string_content string_end expression_statement call attribute identifier identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement identifier | The execution context for rowprocessors and row-generating notebooks and functions. |
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