code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def scan_and_reimport(mod_type: str) -> List[Tuple[str, str]]:
mod_enabled, mod_disabled = get_modules(mod_type)
errors = []
for mod in mod_enabled + mod_disabled:
if mod in sys.modules:
msg = safe_reload(sys.modules[mod])
else:
msg = safe_load(mod)
if msg is ... | module function_definition identifier parameters typed_parameter identifier type identifier type generic_type identifier type_parameter type generic_type identifier type_parameter type identifier type identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list ident... | Scans folder for modules. |
def add_source(self, source):
geocode_service = self._get_service_by_name(source[0])
self._sources.append(geocode_service(**source[1])) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier integer expression_statement call attribute attribute identifier identifier identifier argument_list call identifier argument_li... | Add a geocoding service to this instance. |
def _read_frame(self):
if self._exeng == 'scapy':
return self._scapy_read_frame()
elif self._exeng == 'dpkt':
return self._dpkt_read_frame()
elif self._exeng == 'pyshark':
return self._pyshark_read_frame()
else:
return self._default_read_fr... | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement call attribute identifier identifier argument_list elif_clause comparison_operator attribute identifier identifier strin... | Headquarters for frame reader. |
def refs_to(cls, sha1, repo):
matching = []
for refname in repo.listall_references():
symref = repo.lookup_reference(refname)
dref = symref.resolve()
oid = dref.target
commit = repo.get(oid)
if commit.hex == sha1:
matching.appen... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list identifi... | Returns all refs pointing to the given SHA1. |
def stmt_lambda_proc(self, inputstring, **kwargs):
regexes = []
for i in range(len(self.stmt_lambdas)):
name = self.stmt_lambda_name(i)
regex = compile_regex(r"\b%s\b" % (name,))
regexes.append(regex)
out = []
for line in inputstring.splitlines():
... | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list call identifier argument_list attribute identifier identifier block expression_statement assignment iden... | Add statement lambda definitions. |
def pydeps2reqs(deps):
reqs = defaultdict(set)
for k, v in list(deps.items()):
p = v['path']
if p and not p.startswith(sys.real_prefix):
if p.startswith(sys.prefix) and 'site-packages' in p:
if not p.endswith('.pyd'):
if '/win32/' in p.repla... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier for_statement pattern_list identifier identifier call identifier argument_list call attribute identifier identifier argument_list block expression_statement assignment id... | Convert a deps instance into requirements. |
def _write_reads(reads, prefix):
out_ma = prefix + ".ma"
out_fasta = prefix + ".fasta"
out_real = prefix + ".txt"
with open(out_ma, 'w') as ma_handle:
print("id\tseq\tsample", file=ma_handle, end="")
with open(out_fasta, 'w') as fa_handle:
with open(out_real, 'w') as read_han... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_... | Write fasta file, ma file and real position |
def cross_v3(vec_a, vec_b):
return Vec3(vec_a.y * vec_b.z - vec_a.z * vec_b.y,
vec_a.z * vec_b.x - vec_a.x * vec_b.z,
vec_a.x * vec_b.y - vec_a.y * vec_b.x) | module function_definition identifier parameters identifier identifier block return_statement call identifier argument_list binary_operator binary_operator attribute identifier identifier attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier binary_operator bina... | Return the crossproduct between vec_a and vec_b. |
def purge_portlets(portal):
logger.info("Purging portlets ...")
def remove_portlets(context_portlet):
mapping = portal.restrictedTraverse(context_portlet)
for key in mapping.keys():
if key not in PORTLETS_TO_PURGE:
logger.info("Skipping portlet: '{}'".format(key))
... | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifi... | Remove old portlets. Leave the Navigation portlet only |
def _from_dict(cls, _dict):
args = {}
if 'aggregations' in _dict:
args['aggregations'] = [
MetricAggregation._from_dict(x)
for x in (_dict.get('aggregations'))
]
return cls(**args) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content strin... | Initialize a MetricResponse object from a json dictionary. |
def _writeToTransport(self, data):
self.transport.writeData(data)
self.heartbeater.schedule() | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Frame the array-like thing and write it. |
def mapping_to_str(mapping):
result = ["<"]
for i, (key, value) in enumerate(mapping.items()):
if i > 0:
result.append(",")
result += [key, "=", serialize_for_header(key, value)]
result += [">"]
return "".join(result) | module function_definition identifier parameters identifier block expression_statement assignment identifier list string string_start string_content string_end for_statement pattern_list identifier tuple_pattern identifier identifier call identifier argument_list call attribute identifier identifier argument_list block... | Convert mapping to string |
def _update_throughput(self, tablename, read, write, index):
def get_desc():
desc = self.describe(tablename, refresh=True, require=True)
if index is not None:
return desc.global_indexes[index]
return desc
desc = get_desc()
def num_or_star(value... | module function_definition identifier parameters identifier identifier identifier identifier identifier block function_definition identifier parameters block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier true keyword_argument identif... | Update the throughput on a table or index |
def run(self):
self.factory.register(User, self.users_factory)
self.factory(User, 50).create() | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier attribute identifier identifier expression_statement call attribute call attribute identifier identifier argument_list identifier integer identifier a... | Run the database seeds. |
def validate_auth_mechanism(option, value):
if value not in MECHANISMS and value != 'CRAM-MD5':
raise ValueError("%s must be in %s" % (option, tuple(MECHANISMS)))
return value | module function_definition identifier parameters identifier identifier block if_statement boolean_operator comparison_operator identifier identifier comparison_operator identifier string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string... | Validate the authMechanism URI option. |
def _resolve_user_group_names(opts):
name_id_opts = {'uid': 'user.info',
'gid': 'group.info'}
for ind, opt in enumerate(opts):
if opt.split('=')[0] in name_id_opts:
_givenid = opt.split('=')[1]
_param = opt.split('=')[0]
_id = _givenid
... | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end for_st... | Resolve user and group names in related opts |
def btc_is_singlesig_segwit(privkey_info):
try:
jsonschema.validate(privkey_info, PRIVKEY_MULTISIG_SCHEMA)
if len(privkey_info['private_keys']) > 1:
return False
return privkey_info.get('segwit', False)
except ValidationError:
return False | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier identifier if_statement comparison_operator call identifier argument_list subscript identifier string string_start string_content string_end integer bl... | Is the given key bundle a p2sh-p2wpkh key bundle? |
def _key_to_pb(self, pb):
key = self._key
if key is None:
pairs = [(self._get_kind(), None)]
ref = key_module._ReferenceFromPairs(pairs, reference=pb.mutable_key())
else:
ref = key.reference()
pb.mutable_key().CopyFrom(ref)
group = pb.mutable_entity_group()
if key is not None... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier list tuple call attribute identifier identifier argument_list none exp... | Internal helper to copy the key into a protobuf. |
def state(self, state: str) -> None:
self._state = state
for callback in self._callbacks:
callback() | module function_definition identifier parameters identifier typed_parameter identifier type identifier type none block expression_statement assignment attribute identifier identifier identifier for_statement identifier attribute identifier identifier block expression_statement call identifier argument_list | Update state of event. |
def print_with_header(header, message, color, indent=0):
print()
padding = ' ' * indent
print(padding + color + BOLD + header + ENDC + color + message + ENDC) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier integer block expression_statement call identifier argument_list expression_statement assignment identifier binary_operator string string_start string_content string_end identifier expression_statement call id... | Use one of the functions below for printing, not this one. |
def format_measure(measure):
measure = abs(measure)
if isinstance(measure, int):
return to_text_string(measure)
if 1.e-9 < measure <= 1.e-6:
measure = u"{0:.2f} ns".format(measure / 1.e-9)
elif 1.e-6 < measure <= 1.e-3:
measure = u"{0:.2f} us".f... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement call identifier argument_list identifier identifier block return_statement call identifier argument_list identifier if_statement comparison_operator float id... | Get format and units for data coming from profiler task. |
def atomic_write(path, mode):
tmp_path = "%s%s_%s" % (path, constants.INCOMPLETE_SUFFIX, uuid.uuid4().hex)
with tf.io.gfile.GFile(tmp_path, mode) as file_:
yield file_
tf.io.gfile.rename(tmp_path, path, overwrite=True) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier attribute identifier identifier attribute call attribute identifier identifier argument_list identifier with_statement wi... | Writes to path atomically, by writing to temp file and renaming it. |
def rigthgen(self, value=0):
while True:
yield self.newarray(self.nplanes_right * self.width, value) | module function_definition identifier parameters identifier default_parameter identifier integer block while_statement true block expression_statement yield call attribute identifier identifier argument_list binary_operator attribute identifier identifier attribute identifier identifier identifier | Generate rows to fill right pixels in int mode |
def __create_file_name(self, message_no):
cwd = os.getcwd()
filename = '{0}_{1}.xml'.format(self.output_prefix, message_no)
return os.path.join(cwd, filename) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier... | Create the filename to save to |
def purge_bad_timestamp_files(file_list):
"Given a list of image files, find bad frames, remove them and modify file_list"
MAX_INITIAL_BAD_FRAMES = 15
bad_ts = Kinect.detect_bad_timestamps(Kinect.timestamps_from_file_list(file_list))
if not bad_ts:
return file_list
la... | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argum... | Given a list of image files, find bad frames, remove them and modify file_list |
def _get_geneid2nt(nts):
geneid2nt = {}
for ntd in nts:
geneid = ntd.GeneID
if geneid not in geneid2nt:
geneid2nt[geneid] = ntd
else:
print("DUPLICATE GeneID FOUND {N:9} {SYM}".format(N=geneid, SYM=ntd.Symbol))
return geneid2nt | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier identifier block expression_statement a... | Get geneid2nt given a list of namedtuples. |
def once(ctx, name):
from kibitzr.app import Application
app = Application()
sys.exit(app.run(once=True, log_level=ctx.obj['log_level'], names=name)) | module function_definition identifier parameters identifier identifier block import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list expression_statement call attribute identifier identifier argument_list call attribute iden... | Run kibitzr checks once and exit |
def load_genotypes(self):
if DataParser.compressed_pedigree:
self.genotype_file = gzip.open("%s.gz" % self.tped_file, 'rb')
else:
self.genotype_file = open(self.tped_file)
self.filter_missing() | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list binary_operator string string_start string_content string_end attribute identifier ident... | This really just intializes the file by opening it up. |
def process_request(self, request_object):
identifier = request_object.identifier
resource = request_object.entity_cls.get(identifier)
return ResponseSuccess(Status.SUCCESS, resource) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement call identifier argument_... | Fetch Resource and return Entity |
def write(write_entry: FILE_WRITE_ENTRY):
output_path = environ.paths.clean(write_entry.path)
make_output_directory(output_path)
writer.write_file(output_path, write_entry.contents) | module function_definition identifier parameters typed_parameter identifier type identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call identifier argument_list identifier expression_st... | Writes the contents of the specified file entry to its destination path. |
def install_timers(config, context):
timers = []
if config.get('capture_timeout_warnings'):
timeout_threshold = config.get('timeout_warning_threshold')
time_remaining = context.get_remaining_time_in_millis() / 1000
timers.append(Timer(time_remaining * timeout_threshold, timeout_warning, ... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier... | Create the timers as specified by the plugin configuration. |
def keys_to_string(data):
if isinstance(data, dict):
for key in list(data.keys()):
if isinstance(key, six.string_types):
value = data[key]
val = keys_to_string(value)
del data[key]
data[key.encode("utf8", "ignore")] = val
return... | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block for_statement identifier call identifier argument_list call attribute identifier identifier argument_list block if_statement call identifier argument_list identifier attribute identif... | Function to convert all the unicode keys in string keys |
def _get_technologies():
tech = ''
technologies = pyconnman.ConnManager().get_technologies()
for path, params in technologies:
tech += '{0}\n\tName = {1}\n\tType = {2}\n\tPowered = {3}\n\tConnected = {4}\n'.format(
path, params['Name'], params['Type'], params['Powered'] == 1, params['Con... | module function_definition identifier parameters block expression_statement assignment identifier string string_start string_end expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list for_statement pattern_list identifier identifier identifi... | Returns the technologies of connman |
def can_write(self):
sm = getSecurityManager()
permission = permissions.ModifyPortalContent
if not sm.checkPermission(permission, self.context):
return False
return True | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier attribute identifier identifier if_statement not_operator call attribute identifier identifier argument_list identifier attribute identifi... | Check if the field is writeable |
def _no_answer_do_retry(self, pk, pattern):
logger.info('Resending for pattern %s', pattern)
self.send_packet(pk, expected_reply=pattern, resend=True) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list identifier keyword_argument ide... | Resend packets that we have not gotten answers to |
def ib_group_member_list(self, group_id):
req_hook = 'pod/v1/admin/group/' + group_id + '/membership/list'
req_args = None
status_code, response = self.__rest__.GET_query(req_hook, req_args)
self.logger.debug('%s: %s' % (status_code, response))
return status_code, response | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator binary_operator string string_start string_content string_end identifier string string_start string_content string_end expression_statement assignment identifier none expression_statem... | ib group member list |
def deserialize(self, value, **kwargs):
if self.allow_scalar and not isinstance(value, (list, tuple)):
value = [value]
value = super(List, self).deserialize(value)
result = []
errors = []
for index, val in enumerate(value):
try:
result.appe... | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block if_statement boolean_operator attribute identifier identifier not_operator call identifier argument_list identifier tuple identifier identifier block expression_statement assignment identifier list identifie... | Deserialize every item of the list. |
def from_gene_ids(cls, gene_ids: List[str]):
genes = [ExpGene(id_) for id_ in gene_ids]
return cls.from_genes(genes) | module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier block expression_statement assignment identifier list_comprehension call identifier argument_list identifier for_in_clause identifier identifier return_statement call attrib... | Initialize instance from gene IDs. |
def change_password(self, new_password):
self.set_password(new_password)
self.save()
password_changed.send(sender=self.__class__, user=self) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list keyword_argument... | Changes password and sends a signal |
def put_text(self, key, text):
with open(key, "w") as fh:
fh.write(text) | module function_definition identifier parameters identifier identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argu... | Put the text into the storage associated with the key. |
def identify_core(core):
for datatype, identifier in {
int: _identify_scaler,
numpy.int8: _identify_scaler,
numpy.int16: _identify_scaler,
numpy.int32: _identify_scaler,
numpy.int64: _identify_scaler,
float: _identify_scaler,
numpy.... | module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute dictionary pair identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair att... | Identify the polynomial argument. |
def chmod(self, tarinfo, targetpath):
if hasattr(os, 'chmod'):
try:
os.chmod(targetpath, tarinfo.mode)
except EnvironmentError as e:
raise ExtractError("could not change mode") | module function_definition identifier parameters identifier identifier identifier block if_statement call identifier argument_list identifier string string_start string_content string_end block try_statement block expression_statement call attribute identifier identifier argument_list identifier attribute identifier id... | Set file permissions of targetpath according to tarinfo. |
def getDiscountedBulkPrice(self):
price = self.getBulkPrice()
price = price and price or 0
discount = self.bika_setup.getMemberDiscount()
discount = discount and discount or 0
return float(price) - (float(price) * float(discount)) / 100 | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier boolean_operator boolean_operator identifier identifier integer expression_statement assignment identifier call attri... | Compute discounted bulk discount excl. VAT |
def add_func(self, transmute_func, transmute_context):
swagger_path = transmute_func.get_swagger_path(transmute_context)
for p in transmute_func.paths:
self.add_path(p, swagger_path) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argume... | add a transmute function's swagger definition to the spec |
def reset(self):
status = self.m_objPCANBasic.Reset(self.m_PcanHandle)
return status == PCAN_ERROR_OK | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement comparison_operator identifier identifier | Command the PCAN driver to reset the bus after an error. |
def getErrorResponse(self, errorCode, errorDescr):
self.errorCode = errorCode
self.errorDescr = errorDescr
self.response = "yes"
return self | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier string string_star... | This methods sets error attributes of an external method object. |
def _compile(self, target, results_dir, source):
obj = self._objpath(target, results_dir, source)
safe_mkdir_for(obj)
abs_source = os.path.join(get_buildroot(), source)
include_dirs = []
for dep in target.dependencies:
if self.is_library(dep):
include_dirs.extend([os.path.join(get_buil... | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier expression_statement call identifier argument_list identifier expression_statement assignment ... | Compile given source to an object file. |
def _parse_template_or_argument(self):
self._head += 2
braces = 2
while self._read() == "{":
self._head += 1
braces += 1
has_content = False
self._push()
while braces:
if braces == 1:
return self._emit_text_then_stack("{... | module function_definition identifier parameters identifier block expression_statement augmented_assignment attribute identifier identifier integer expression_statement assignment identifier integer while_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content... | Parse a template or argument at the head of the wikicode string. |
def calc_secondary_parameters(self):
self.a = self.x/(2.*self.d**.5)
self.b = self.u/(2.*self.d**.5) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier parenthesized_expression binary_operator float binary_operator attribute identifier identifier float expression_statement assignment attribute... | Determine the values of the secondary parameters `a` and `b`. |
def _gather(self, *args, **kwargs):
propagate = kwargs.pop('propagate', True)
return (self.to_python(reply, propagate=propagate)
for reply in self.actor._collect_replies(*args, **kwargs)) | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end true return_statement generator_expression call ... | Generator over the results |
def compress(samples, run_parallel):
to_cram = []
finished = []
for data in [x[0] for x in samples]:
if "cram" in dd.get_archive(data) or "cram-lossless" in dd.get_archive(data):
to_cram.append([data])
else:
finished.append([data])
crammed = run_parallel("archive_... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list for_statement identifier list_comprehension subscript identifier integer for_in_clause identifier identifier block if_statement boolean_operator co... | Perform compression of output files for long term storage. |
def run(agent_id, force=False):
if agent_id is None:
agent_list = LiveSyncAgent.find_all()
else:
agent = LiveSyncAgent.find_first(id=agent_id)
if agent is None:
print 'No such agent'
return
agent_list = [agent]
for agent in agent_list:
if agent... | module function_definition identifier parameters identifier default_parameter identifier false block if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list else_clause block expression_statement assignment identifier call attr... | Runs the livesync agent |
def from_dict(cls, d):
structure = SlabEntry.from_dict(d["structure"])
energy = SlabEntry.from_dict(d["energy"])
miller_index = d["miller_index"]
label = d["label"]
coverage = d["coverage"]
adsorbates = d["adsorbates"]
clean_entry = d["clean_entry"] = self.clean_e... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier ar... | Returns a SlabEntry by reading in an dictionary |
def use_comparative_comment_view(self):
self._object_views['comment'] = COMPARATIVE
for session in self._get_provider_sessions():
try:
session.use_comparative_comment_view()
except AttributeError:
pass | module function_definition identifier parameters identifier block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end identifier for_statement identifier call attribute identifier identifier argument_list block try_statement block expression_statement ... | Pass through to provider CommentLookupSession.use_comparative_comment_view |
def _copy(self):
copied_uri = Uri(self.uri.scheme, self.uri.host, self.uri.port,
self.uri.path, self.uri.query.copy())
new_request = HttpRequest(uri=copied_uri, method=self.method,
headers=self.headers.copy())
new_request._body_parts = self._body_parts[:]
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier attribute attribute id... | Creates a deep copy of this request. |
def add_synonym(self, other):
self.synonyms.extend(other.synonyms)
other.synonyms = self.synonyms | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier | Every word in a group of synonyms shares the same list. |
def meth_wdl(args):
r = fapi.get_repository_method(args.namespace, args.method,
args.snapshot_id, True)
fapi._check_response_code(r, 200)
return r.text | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier true expression_statement call attribute identifier identifier a... | Retrieve WDL for given version of a repository method |
def _instantiate_app(self, target_cls, kwargs):
parse_context = ParseContext(kwargs['address'].spec_path, dict())
bundleprops_factory = Bundle(parse_context)
kwargs['bundles'] = [
bundleprops_factory.create_bundle_props(bundle)
for bundle in kwargs['bundles']
]
return target_cls(build_gr... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list attribute subscript identifier string string_start string_content string_end identifier call identifier argument_list expression_statement assignment identifie... | For App targets, convert BundleAdaptor to BundleProps. |
def addBiosample(self, biosample):
id_ = biosample.getId()
self._biosampleIdMap[id_] = biosample
self._biosampleIds.append(id_)
self._biosampleNameMap[biosample.getName()] = biosample | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement call attribute attribute identif... | Adds the specified biosample to this dataset. |
def send_text(hwnd, txt):
try:
for c in txt:
if c == '\n':
win32api.SendMessage(hwnd, win32con.WM_KEYDOWN, win32con.VK_RETURN, 0)
win32api.SendMessage(hwnd, win32con.WM_KEYUP, win32con.VK_RETURN, 0)
else:
win32api.SendMessage(hwnd, win3... | module function_definition identifier parameters identifier identifier block try_statement block for_statement identifier identifier block if_statement comparison_operator identifier string string_start string_content escape_sequence string_end block expression_statement call attribute identifier identifier argument_li... | sends the text 'txt' to the window handle hwnd using SendMessage |
def from_eocube(eocube, ji):
eocubewin = EOCubeChunk(ji, eocube.df_layers, eocube.chunksize, eocube.wdir)
return eocubewin | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier return_statement identifier | Create a EOCubeChunk object from an EOCube object. |
def close(self):
self.run_info['end'] = datetime.now()
self._p.stdin.close()
for line in self._p.stdout:
if line.startswith('NOTE: tsdb run:'):
self._read_run_info(line)
else:
logging.debug('ACE cleanup: {}'.format(line.rstrip()))
r... | module function_definition identifier parameters identifier block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end call attribute identifier identifier argument_list expression_statement call attribute attribute attribute identifier identifier ident... | Close the ACE process and return the process's exit code. |
def _clean_dirty(self, obj=None):
obj = obj or self
obj.__dict__['_dirty_attributes'].clear()
obj._dirty = False
for key, val in vars(obj).items():
if isinstance(val, BaseObject):
self._clean_dirty(val)
else:
func = getattr(val, '_c... | module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier boolean_operator identifier identifier expression_statement call attribute subscript attribute identifier identifier string string_start string_content string_end identifier arg... | Recursively clean self and all child objects. |
def in_scope(self, scope: str):
old_scope = self.resolution_scope
self.resolution_scope = urlparse.urljoin(old_scope, scope)
try:
yield
finally:
self.resolution_scope = old_scope | module function_definition identifier parameters identifier typed_parameter identifier type identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier identifier... | Context manager to handle current scope. |
def _validate_config():
if not isinstance(__opts__['azurefs'], list):
log.error('azurefs configuration is not formed as a list, skipping azurefs')
return False
for container in __opts__['azurefs']:
if not isinstance(container, dict):
log.error(
'One or more en... | module function_definition identifier parameters block if_statement not_operator call identifier argument_list subscript identifier string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_... | Validate azurefs config, return False if it doesn't validate |
def remove_null(obj):
if isinstance(obj, set):
try:
obj.remove(None)
except:
pass
elif isinstance(obj, list):
for item in obj:
if not is_not_null(item):
obj.remove(item)
return obj | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list none except_clause block pass_statement elif_clause call identifier argument_list identifie... | reads through a list or set and strips any null values |
def _extract_gaussian_gradient_magnitude(image, mask = slice(None), sigma = 1, voxelspacing = None):
if voxelspacing is None:
voxelspacing = [1.] * image.ndim
sigma = _create_structure_array(sigma, voxelspacing)
return _extract_intensities(scipy_gaussian_gradient_magnitude(image, sigma), mask) | module function_definition identifier parameters identifier default_parameter identifier call identifier argument_list none default_parameter identifier integer default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier binary_operator list ... | Internal, single-image version of `gaussian_gradient_magnitude`. |
def ReadIntoObject(buff, index, value_obj, length=0):
raw_data = value_obj.GetRawData()
count = 0
for (encoded_tag, encoded_length, encoded_field) in SplitBuffer(
buff, index=index, length=length):
type_info_obj = value_obj.type_infos_by_encoded_tag.get(encoded_tag)
wire_format = (encoded_tag, encod... | module function_definition identifier parameters identifier identifier identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier integer for_statement tuple_pattern identifier identifier ... | Reads all tags until the next end group and store in the value_obj. |
def _format_base_path(self, api_name):
name = self.app_name
if self.app_name != api_name:
name = '{0}-{1}'.format(self.app_name, api_name)
return name | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier identifier block expression_statement assignment identifier call attribute string string_start string_c... | Format the base path name. |
def save_activity(self, activity_form, *args, **kwargs):
if activity_form.is_for_update():
return self.update_activity(activity_form, *args, **kwargs)
else:
return self.create_activity(activity_form, *args, **kwargs) | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement call attribute identifier identifier argument_list block return_statement call attribute identifier identifier argument_list identifier list_splat identifier dictio... | Pass through to provider ActivityAdminSession.update_activity |
def _join_strings(x):
for i in range(len(x)-1):
if x[i]['t'] == 'Str' and x[i+1]['t'] == 'Str':
x[i]['c'] += x[i+1]['c']
del x[i+1]
return None
return True | module function_definition identifier parameters identifier block for_statement identifier call identifier argument_list binary_operator call identifier argument_list identifier integer block if_statement boolean_operator comparison_operator subscript subscript identifier identifier string string_start string_content s... | Joins adjacent Str elements found in the element list 'x'. |
def Regions(self,
skip_mapped_files=False,
skip_shared_regions=False,
skip_executable_regions=False,
skip_readonly_regions=False):
try:
maps_file = open("/proc/" + str(self.pid) + "/maps", "r")
except OSError as e:
raise process_error.ProcessEr... | module function_definition identifier parameters identifier default_parameter identifier false default_parameter identifier false default_parameter identifier false default_parameter identifier false block try_statement block expression_statement assignment identifier call identifier argument_list binary_operator binar... | Returns an iterator over the readable regions for this process. |
def rdf_suffix(fmt: str) -> str:
for k, v in SUFFIX_FORMAT_MAP.items():
if fmt == v:
return k
return 'rdf' | module function_definition identifier parameters typed_parameter identifier type identifier type identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier identifier block return_statement identifier return_stat... | Map the RDF format to the approproate suffix |
def add_cmd_output(self, cmds, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
if isinstance(cmds, six.string_types):
cmds = [cmds]
... | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier integer default_parameter identifier true default_parameter identifier true default_parameter identifier none default_parameter identifier none default_... | Run a program or a list of programs and collect the output |
def _get_relationship_cell_val(self, obj, column):
val = ""
key = column['key']
related_key = column.get('related_key', None)
related_obj = getattr(obj, key, None)
if related_obj is None:
return ""
if column['__col__'].uselist:
if related_key is no... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier string string_start string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call ... | Return the value to insert in a relationship cell |
def listen_tta(self, target, timeout):
info = "{device} does not support listen as Type A Target"
raise nfc.clf.UnsupportedTargetError(info.format(device=self)) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier string string_start string_content string_end raise_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list keyw... | Listen as Type A Target is not supported. |
def process(self):
response = None
try:
payload = self.receive()
method, args, ref = self.parse(payload)
response = self.execute(method, args, ref)
except AuthenticateError as exception:
logging.error(
'Service error while authentic... | module function_definition identifier parameters identifier block expression_statement assignment identifier none try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment pattern_list identifier identifier identifier call attribute... | Receive data from socket and process request |
def setup_logging(self):
is_custom_logging = len(self.options.logging_config) > 0
is_custom_logging = is_custom_logging and os.path.isfile(self.options.logging_config)
is_custom_logging = is_custom_logging and not self.options.dry_run
if is_custom_logging:
Logger.configure_by... | module function_definition identifier parameters identifier block expression_statement assignment identifier comparison_operator call identifier argument_list attribute attribute identifier identifier identifier integer expression_statement assignment identifier boolean_operator identifier call attribute attribute iden... | Setup of application logging. |
def _count_classified_pixels(self):
class_values = self.class_dictionary.values()
classification_count = np.array([[[np.count_nonzero(prediction[np.nonzero(mask)] == class_val)
for prediction, mask in zip(self.classification_masks, masktype)]
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list list_comprehension list_comprehension list_co... | Count the pixels belonging to each classified class. |
def remove_all_cts_records_by(file_name, crypto_idfp):
db = XonoticDB.load_path(file_name)
db.remove_all_cts_records_by(crypto_idfp)
db.save(file_name) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifi... | Remove all cts records set by player with CRYPTO_IDFP |
def nic_name_to_host(nic_name):
from netifaces import ifaddresses, AF_INET
host = ifaddresses(nic_name).setdefault(AF_INET, [{'addr': 'No IP addr'}] )[0]['addr']
return(host) | module function_definition identifier parameters identifier block import_from_statement dotted_name identifier dotted_name identifier dotted_name identifier expression_statement assignment identifier subscript subscript call attribute call identifier argument_list identifier identifier argument_list identifier list dic... | helper function to translate the name of a network card into a valid host name |
def clean(self):
result = super(User, self).clean()
result['verified'] = 'verification_hash' not in self._resource
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier identifier argument_list expression_statement assignment subscript identifier string string_start string_content string_end comparison_operator ... | Verified value is derived from whether user has a verification hash |
def exists(self):
try:
self.stat()
except OSError as e:
if e.errno not in (ENOENT, ENOTDIR):
raise
return False
return True | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block if_statement comparison_operator attribute identifier identifier tuple identifier identifie... | Whether this path exists. |
def _safe_run_theta(input_file, out_dir, output_ext, args, data):
out_file = os.path.join(out_dir, _split_theta_ext(input_file) + output_ext)
skip_file = out_file + ".skipped"
if utils.file_exists(skip_file):
return None
if not utils.file_exists(out_file):
with file_transaction(data, out... | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator call identifier argument_list identifier identifier expression_state... | Run THetA, catching and continuing on any errors. |
def _clone_reverses(self, old_reverses):
for ctype, reverses in old_reverses.items():
for parts in reverses.values():
sub_objs = parts[1]
field_name = parts[0]
attrs = {}
for sub_obj in sub_objs:
if ctype != 'm2m' an... | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier subscript id... | Clones all the objects that were previously gathered. |
def input(self, prompt, default=None, show_default=True):
return click.prompt(prompt, default=default, show_default=show_default) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier true block return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier | Provide a command prompt. |
def instance_signals_and_handlers(cls, instance):
isignals = cls._signals.copy()
ihandlers = cls._build_instance_handler_mapping(
instance,
cls._signal_handlers
)
return isignals, ihandlers | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier id... | Calculate per-instance signals and handlers. |
def build_extra_headers(request, proxyMode, orgaMode, currentOrga):
things_to_add = {}
if proxyMode:
for prop in settings.PIAPI_USERDATA:
if hasattr(request.user, prop):
things_to_add['user_' + prop] = getattr(request.user, prop)
if orgaMode:
things_to_add... | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier dictionary if_statement identifier block for_statement identifier attribute identifier identifier block if_statement call identifier argument_list attribute identifier identifier... | Build the list of extra headers |
def iter_links(operations, page):
for operation, ns, rule, func in operations:
yield Link.for_(
operation=operation,
ns=ns,
type=ns.subject_name,
qs=page.to_items(),
) | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier identifier identifier identifier block expression_statement yield call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier... | Generate links for an iterable of operations on a starting page. |
def install_pip(env, requirements):
try:
installation_source_folder = config.installation_cache_folder()
options = setuptools_install_options(installation_source_folder)
if installation_source_folder is not None:
zip_eggs_in_folder(installation_source_folder)
env.ex... | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier n... | Install pip and its requirements using setuptools. |
def __read_device(self):
state = XinputState()
res = self.manager.xinput.XInputGetState(
self.__device_number, ctypes.byref(state))
if res == XINPUT_ERROR_SUCCESS:
return state
if res != XINPUT_ERROR_DEVICE_NOT_CONNECTED:
raise RuntimeError(
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier call attribut... | Read the state of the gamepad. |
def routeDefault(self, request, year=None):
eventsView = request.GET.get('view', self.default_view)
if eventsView in ("L", "list"):
return self.serveUpcoming(request)
elif eventsView in ("W", "weekly"):
return self.serveWeek(request, year)
else:
return... | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end attribute identifier identifier if_statement com... | Route a request to the default calendar view. |
def add_if_none_match(self):
option = Option()
option.number = defines.OptionRegistry.IF_NONE_MATCH.number
option.value = None
self.add_option(option) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier attribute attribute attribute identifier identifier identifier identifier expression_statement assignment attribute i... | Add the if-none-match option to the request. |
def _get_qsize(tuning, width):
names = [x.to_shorthand() for x in tuning.tuning]
basesize = len(max(names)) + 3
barsize = ((width - basesize) - 2) - 1
return max(0, int(barsize / 4.5)) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list for_in_clause identifier attribute identifier identifier expression_statement assignment identifier binary_operator call identifie... | Return a reasonable quarter note size for 'tuning' and 'width'. |
def instances(exp=".*"):
"Filter list of machines matching an expression"
expression = re.compile(exp)
instances = []
for node in ec2_instances():
if node.tags and ip(node):
try:
if expression.match(node.tags.get("Name")):
instances.append(node)
... | module function_definition identifier parameters default_parameter identifier string string_start string_content string_end block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_stateme... | Filter list of machines matching an expression |
def _get_parents_from_parts(kwargs):
parent_builder = []
if kwargs['last_child_num'] is not None:
parent_builder.append('{type}/{name}/'.format(**kwargs))
for index in range(1, kwargs['last_child_num']):
child_namespace = kwargs.get('child_namespace_{}'.format(index))
if ... | module function_definition identifier parameters identifier block expression_statement assignment identifier list if_statement comparison_operator subscript identifier string string_start string_content string_end none block expression_statement call attribute identifier identifier argument_list call attribute string s... | Get the parents given all the children parameters. |
def layerize(begin_update=None, predict=None, *args, **kwargs):
if begin_update is not None:
return FunctionLayer(begin_update, predict=predict, *args, **kwargs)
def wrapper(begin_update):
return FunctionLayer(begin_update, *args, **kwargs)
return wrapper | module function_definition identifier parameters default_parameter identifier none default_parameter identifier none list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement comparison_operator identifier none block return_statement call identifier argument_list identifier keyword_argument i... | Wrap a function into a layer |
def _nacm_default_deny_stmt(self, stmt: Statement, sctx: SchemaContext) -> None:
if not hasattr(self, 'default_deny'):
return
if stmt.keyword == "default-deny-all":
self.default_deny = DefaultDeny.all
elif stmt.keyword == "default-deny-write":
self.default_den... | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type none block if_statement not_operator call identifier argument_list identifier string string_start string_content string_end block return_statement if_statement compariso... | Set NACM default access. |
def flow(self)->FlowField:
"Access the flow-field grid after applying queued affine and coord transforms."
if self._affine_mat is not None:
self._flow = _affine_inv_mult(self._flow, self._affine_mat)
self._affine_mat = None
self.transformed = True
if len(self.... | module function_definition identifier parameters identifier type identifier block expression_statement string string_start string_content string_end if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call identifier argument_list a... | Access the flow-field grid after applying queued affine and coord transforms. |
def ReplaceHomoglyphs(s):
homoglyphs = {
'\xa0': ' ',
'\u00e3': '',
'\u00a0': ' ',
'\u00a9': '(C)',
'\u00ae': '(R)',
'\u2014': '-',
'\u2018': "'",
'\u2019': "'",
'\u201c': '"',
'\u201d': '"',
'\u2026': '...',
'\u2e3a': '... | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start ... | Returns s with unicode homoglyphs replaced by ascii equivalents. |
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