code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def scan_and_reimport(mod_type: str) -> List[Tuple[str, str]]:
mod_enabled, mod_disabled = get_modules(mod_type)
errors = []
for mod in mod_enabled + mod_disabled:
if mod in sys.modules:
msg = safe_reload(sys.modules[mod])
else:
msg = safe_load(mod)
if msg is not None:
errors.append((mod, msg))
return errors | module function_definition identifier parameters typed_parameter identifier type identifier type generic_type identifier type_parameter type generic_type identifier type_parameter type identifier type identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier expression_statement assignment identifier list for_statement identifier binary_operator identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment identifier call identifier argument_list subscript attribute identifier identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list tuple identifier identifier return_statement identifier | Scans folder for modules. |
def add_source(self, source):
geocode_service = self._get_service_by_name(source[0])
self._sources.append(geocode_service(**source[1])) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier integer expression_statement call attribute attribute identifier identifier identifier argument_list call identifier argument_list dictionary_splat subscript identifier integer | Add a geocoding service to this instance. |
def _read_frame(self):
if self._exeng == 'scapy':
return self._scapy_read_frame()
elif self._exeng == 'dpkt':
return self._dpkt_read_frame()
elif self._exeng == 'pyshark':
return self._pyshark_read_frame()
else:
return self._default_read_frame() | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement call attribute identifier identifier argument_list elif_clause comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement call attribute identifier identifier argument_list elif_clause comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement call attribute identifier identifier argument_list else_clause block return_statement call attribute identifier identifier argument_list | Headquarters for frame reader. |
def refs_to(cls, sha1, repo):
matching = []
for refname in repo.listall_references():
symref = repo.lookup_reference(refname)
dref = symref.resolve()
oid = dref.target
commit = repo.get(oid)
if commit.hex == sha1:
matching.append(symref.shorthand)
return matching | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement identifier | Returns all refs pointing to the given SHA1. |
def stmt_lambda_proc(self, inputstring, **kwargs):
regexes = []
for i in range(len(self.stmt_lambdas)):
name = self.stmt_lambda_name(i)
regex = compile_regex(r"\b%s\b" % (name,))
regexes.append(regex)
out = []
for line in inputstring.splitlines():
for i, regex in enumerate(regexes):
if regex.search(line):
indent, line = split_leading_indent(line)
out.append(indent + self.stmt_lambdas[i])
out.append(line)
return "\n".join(out) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list call identifier argument_list attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list binary_operator string string_start string_content string_end tuple identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier list for_statement identifier call attribute identifier identifier argument_list block for_statement pattern_list identifier identifier call identifier argument_list identifier block if_statement call attribute identifier identifier argument_list identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list binary_operator identifier subscript attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier return_statement call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier | Add statement lambda definitions. |
def pydeps2reqs(deps):
reqs = defaultdict(set)
for k, v in list(deps.items()):
p = v['path']
if p and not p.startswith(sys.real_prefix):
if p.startswith(sys.prefix) and 'site-packages' in p:
if not p.endswith('.pyd'):
if '/win32/' in p.replace('\\', '/'):
reqs['win32'] |= set(v['imported_by'])
else:
name = k.split('.', 1)[0]
if name not in skiplist:
reqs[name] |= set(v['imported_by'])
if '_dummy' in reqs:
del reqs['_dummy']
return '\n'.join(dep2req(name, reqs[name]) for name in sorted(reqs)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier for_statement pattern_list identifier identifier call identifier argument_list call attribute identifier identifier argument_list block expression_statement assignment identifier subscript identifier string string_start string_content string_end if_statement boolean_operator identifier not_operator call attribute identifier identifier argument_list attribute identifier identifier block if_statement boolean_operator call attribute identifier identifier argument_list attribute identifier identifier comparison_operator string string_start string_content string_end identifier block if_statement not_operator call attribute identifier identifier argument_list string string_start string_content string_end block if_statement comparison_operator string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end string string_start string_content string_end block expression_statement augmented_assignment subscript identifier string string_start string_content string_end call identifier argument_list subscript identifier string string_start string_content string_end else_clause block expression_statement assignment identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end integer integer if_statement comparison_operator identifier identifier block expression_statement augmented_assignment subscript identifier identifier call identifier argument_list subscript identifier string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block delete_statement subscript identifier string string_start string_content string_end return_statement call attribute string string_start string_content escape_sequence string_end identifier generator_expression call identifier argument_list identifier subscript identifier identifier for_in_clause identifier call identifier argument_list identifier | Convert a deps instance into requirements. |
def _write_reads(reads, prefix):
out_ma = prefix + ".ma"
out_fasta = prefix + ".fasta"
out_real = prefix + ".txt"
with open(out_ma, 'w') as ma_handle:
print("id\tseq\tsample", file=ma_handle, end="")
with open(out_fasta, 'w') as fa_handle:
with open(out_real, 'w') as read_handle:
for idx, r in enumerate(reads):
info = r.split("_")
print("seq_%s\t%s\t%s" % (idx, reads[r][0], reads[r][1]), file=ma_handle, end="")
print(">seq_%s\n%s" % (idx, reads[r][0]), file=fa_handle, end="")
print("%s\t%s\t%s\t%s\t%s\t%s\t%s" % (idx, r, reads[r][0], reads[r][1], info[1], info[2], info[3]), file=read_handle, end="") | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier binary_operator identifier string string_start string_content string_end with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call identifier argument_list string string_start string_content escape_sequence escape_sequence string_end keyword_argument identifier identifier keyword_argument identifier string string_start string_end with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block for_statement pattern_list identifier identifier call identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list binary_operator string string_start string_content escape_sequence escape_sequence string_end tuple identifier subscript subscript identifier identifier integer subscript subscript identifier identifier integer keyword_argument identifier identifier keyword_argument identifier string string_start string_end expression_statement call identifier argument_list binary_operator string string_start string_content escape_sequence string_end tuple identifier subscript subscript identifier identifier integer keyword_argument identifier identifier keyword_argument identifier string string_start string_end expression_statement call identifier argument_list binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence string_end tuple identifier identifier subscript subscript identifier identifier integer subscript subscript identifier identifier integer subscript identifier integer subscript identifier integer subscript identifier integer keyword_argument identifier identifier keyword_argument identifier string string_start string_end | Write fasta file, ma file and real position |
def cross_v3(vec_a, vec_b):
return Vec3(vec_a.y * vec_b.z - vec_a.z * vec_b.y,
vec_a.z * vec_b.x - vec_a.x * vec_b.z,
vec_a.x * vec_b.y - vec_a.y * vec_b.x) | module function_definition identifier parameters identifier identifier block return_statement call identifier argument_list binary_operator binary_operator attribute identifier identifier attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier binary_operator binary_operator attribute identifier identifier attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier binary_operator binary_operator attribute identifier identifier attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier | Return the crossproduct between vec_a and vec_b. |
def purge_portlets(portal):
logger.info("Purging portlets ...")
def remove_portlets(context_portlet):
mapping = portal.restrictedTraverse(context_portlet)
for key in mapping.keys():
if key not in PORTLETS_TO_PURGE:
logger.info("Skipping portlet: '{}'".format(key))
continue
logger.info("Removing portlet: '{}'".format(key))
del mapping[key]
remove_portlets("++contextportlets++plone.leftcolumn")
remove_portlets("++contextportlets++plone.rightcolumn")
setup = portal.portal_setup
setup.runImportStepFromProfile(profile, 'portlets')
logger.info("Purging portlets [DONE]") | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier continue_statement expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier delete_statement subscript identifier identifier expression_statement call identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list string string_start string_content string_end | Remove old portlets. Leave the Navigation portlet only |
def _from_dict(cls, _dict):
args = {}
if 'aggregations' in _dict:
args['aggregations'] = [
MetricAggregation._from_dict(x)
for x in (_dict.get('aggregations'))
]
return cls(**args) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier parenthesized_expression call attribute identifier identifier argument_list string string_start string_content string_end return_statement call identifier argument_list dictionary_splat identifier | Initialize a MetricResponse object from a json dictionary. |
def _writeToTransport(self, data):
self.transport.writeData(data)
self.heartbeater.schedule() | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Frame the array-like thing and write it. |
def mapping_to_str(mapping):
result = ["<"]
for i, (key, value) in enumerate(mapping.items()):
if i > 0:
result.append(",")
result += [key, "=", serialize_for_header(key, value)]
result += [">"]
return "".join(result) | module function_definition identifier parameters identifier block expression_statement assignment identifier list string string_start string_content string_end for_statement pattern_list identifier tuple_pattern identifier identifier call identifier argument_list call attribute identifier identifier argument_list block if_statement comparison_operator identifier integer block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement augmented_assignment identifier list identifier string string_start string_content string_end call identifier argument_list identifier identifier expression_statement augmented_assignment identifier list string string_start string_content string_end return_statement call attribute string string_start string_end identifier argument_list identifier | Convert mapping to string |
def _update_throughput(self, tablename, read, write, index):
def get_desc():
desc = self.describe(tablename, refresh=True, require=True)
if index is not None:
return desc.global_indexes[index]
return desc
desc = get_desc()
def num_or_star(value):
return 0 if value == "*" else resolve(value)
read = num_or_star(read)
write = num_or_star(write)
if read <= 0:
read = desc.read_throughput
if write <= 0:
write = desc.write_throughput
throughput = Throughput(read, write)
kwargs = {}
if index:
kwargs["global_indexes"] = {index: throughput}
else:
kwargs["throughput"] = throughput
self.connection.update_table(tablename, **kwargs)
desc = get_desc()
while desc.status == "UPDATING":
time.sleep(5)
desc = get_desc() | module function_definition identifier parameters identifier identifier identifier identifier identifier block function_definition identifier parameters block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier true keyword_argument identifier true if_statement comparison_operator identifier none block return_statement subscript attribute identifier identifier identifier return_statement identifier expression_statement assignment identifier call identifier argument_list function_definition identifier parameters identifier block return_statement conditional_expression integer comparison_operator identifier string string_start string_content string_end call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier integer block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier integer block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier dictionary if_statement identifier block expression_statement assignment subscript identifier string string_start string_content string_end dictionary pair identifier identifier else_clause block expression_statement assignment subscript identifier string string_start string_content string_end identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier dictionary_splat identifier expression_statement assignment identifier call identifier argument_list while_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list integer expression_statement assignment identifier call identifier argument_list | Update the throughput on a table or index |
def run(self):
self.factory.register(User, self.users_factory)
self.factory(User, 50).create() | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier attribute identifier identifier expression_statement call attribute call attribute identifier identifier argument_list identifier integer identifier argument_list | Run the database seeds. |
def validate_auth_mechanism(option, value):
if value not in MECHANISMS and value != 'CRAM-MD5':
raise ValueError("%s must be in %s" % (option, tuple(MECHANISMS)))
return value | module function_definition identifier parameters identifier identifier block if_statement boolean_operator comparison_operator identifier identifier comparison_operator identifier string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier call identifier argument_list identifier return_statement identifier | Validate the authMechanism URI option. |
def _resolve_user_group_names(opts):
name_id_opts = {'uid': 'user.info',
'gid': 'group.info'}
for ind, opt in enumerate(opts):
if opt.split('=')[0] in name_id_opts:
_givenid = opt.split('=')[1]
_param = opt.split('=')[0]
_id = _givenid
if not re.match('[0-9]+$', _givenid):
_info = __salt__[name_id_opts[_param]](_givenid)
if _info and _param in _info:
_id = _info[_param]
opts[ind] = _param + '=' + six.text_type(_id)
opts[ind] = opts[ind].replace('\\040', '\\ ')
return opts | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end for_statement pattern_list identifier identifier call identifier argument_list identifier block if_statement comparison_operator subscript call attribute identifier identifier argument_list string string_start string_content string_end integer identifier block expression_statement assignment identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end integer expression_statement assignment identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end integer expression_statement assignment identifier identifier if_statement not_operator call attribute identifier identifier argument_list string string_start string_content string_end identifier block expression_statement assignment identifier call subscript identifier subscript identifier identifier argument_list identifier if_statement boolean_operator identifier comparison_operator identifier identifier block expression_statement assignment identifier subscript identifier identifier expression_statement assignment subscript identifier identifier binary_operator binary_operator identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier expression_statement assignment subscript identifier identifier call attribute subscript identifier identifier identifier argument_list string string_start string_content escape_sequence string_end string string_start string_content escape_sequence string_end return_statement identifier | Resolve user and group names in related opts |
def btc_is_singlesig_segwit(privkey_info):
try:
jsonschema.validate(privkey_info, PRIVKEY_MULTISIG_SCHEMA)
if len(privkey_info['private_keys']) > 1:
return False
return privkey_info.get('segwit', False)
except ValidationError:
return False | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier identifier if_statement comparison_operator call identifier argument_list subscript identifier string string_start string_content string_end integer block return_statement false return_statement call attribute identifier identifier argument_list string string_start string_content string_end false except_clause identifier block return_statement false | Is the given key bundle a p2sh-p2wpkh key bundle? |
def _key_to_pb(self, pb):
key = self._key
if key is None:
pairs = [(self._get_kind(), None)]
ref = key_module._ReferenceFromPairs(pairs, reference=pb.mutable_key())
else:
ref = key.reference()
pb.mutable_key().CopyFrom(ref)
group = pb.mutable_entity_group()
if key is not None and key.id():
elem = ref.path().element(0)
if elem.id() or elem.name():
group.add_element().CopyFrom(elem) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier list tuple call attribute identifier identifier argument_list none expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier call attribute identifier identifier argument_list else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute call attribute identifier identifier argument_list identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator identifier none call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list integer if_statement boolean_operator call attribute identifier identifier argument_list call attribute identifier identifier argument_list block expression_statement call attribute call attribute identifier identifier argument_list identifier argument_list identifier | Internal helper to copy the key into a protobuf. |
def state(self, state: str) -> None:
self._state = state
for callback in self._callbacks:
callback() | module function_definition identifier parameters identifier typed_parameter identifier type identifier type none block expression_statement assignment attribute identifier identifier identifier for_statement identifier attribute identifier identifier block expression_statement call identifier argument_list | Update state of event. |
def print_with_header(header, message, color, indent=0):
print()
padding = ' ' * indent
print(padding + color + BOLD + header + ENDC + color + message + ENDC) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier integer block expression_statement call identifier argument_list expression_statement assignment identifier binary_operator string string_start string_content string_end identifier expression_statement call identifier argument_list binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator identifier identifier identifier identifier identifier identifier identifier identifier | Use one of the functions below for printing, not this one. |
def format_measure(measure):
measure = abs(measure)
if isinstance(measure, int):
return to_text_string(measure)
if 1.e-9 < measure <= 1.e-6:
measure = u"{0:.2f} ns".format(measure / 1.e-9)
elif 1.e-6 < measure <= 1.e-3:
measure = u"{0:.2f} us".format(measure / 1.e-6)
elif 1.e-3 < measure <= 1:
measure = u"{0:.2f} ms".format(measure / 1.e-3)
elif 1 < measure <= 60:
measure = u"{0:.2f} sec".format(measure)
elif 60 < measure <= 3600:
m, s = divmod(measure, 3600)
if s > 60:
m, s = divmod(measure, 60)
s = to_text_string(s).split(".")[-1]
measure = u"{0:.0f}.{1:.2s} min".format(m, s)
else:
h, m = divmod(measure, 3600)
if m > 60:
m /= 60
measure = u"{0:.0f}h:{1:.0f}min".format(h, m)
return measure | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement call identifier argument_list identifier identifier block return_statement call identifier argument_list identifier if_statement comparison_operator float identifier float block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list binary_operator identifier float elif_clause comparison_operator float identifier float block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list binary_operator identifier float elif_clause comparison_operator float identifier integer block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list binary_operator identifier float elif_clause comparison_operator integer identifier integer block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier elif_clause comparison_operator integer identifier integer block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier integer if_statement comparison_operator identifier integer block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier integer expression_statement assignment identifier subscript call attribute call identifier argument_list identifier identifier argument_list string string_start string_content string_end unary_operator integer expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier identifier else_clause block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier integer if_statement comparison_operator identifier integer block expression_statement augmented_assignment identifier integer expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier identifier return_statement identifier | Get format and units for data coming from profiler task. |
def atomic_write(path, mode):
tmp_path = "%s%s_%s" % (path, constants.INCOMPLETE_SUFFIX, uuid.uuid4().hex)
with tf.io.gfile.GFile(tmp_path, mode) as file_:
yield file_
tf.io.gfile.rename(tmp_path, path, overwrite=True) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier attribute identifier identifier attribute call attribute identifier identifier argument_list identifier with_statement with_clause with_item as_pattern call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier as_pattern_target identifier block expression_statement yield identifier expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier keyword_argument identifier true | Writes to path atomically, by writing to temp file and renaming it. |
def rigthgen(self, value=0):
while True:
yield self.newarray(self.nplanes_right * self.width, value) | module function_definition identifier parameters identifier default_parameter identifier integer block while_statement true block expression_statement yield call attribute identifier identifier argument_list binary_operator attribute identifier identifier attribute identifier identifier identifier | Generate rows to fill right pixels in int mode |
def __create_file_name(self, message_no):
cwd = os.getcwd()
filename = '{0}_{1}.xml'.format(self.output_prefix, message_no)
return os.path.join(cwd, filename) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier identifier return_statement call attribute attribute identifier identifier identifier argument_list identifier identifier | Create the filename to save to |
def purge_bad_timestamp_files(file_list):
"Given a list of image files, find bad frames, remove them and modify file_list"
MAX_INITIAL_BAD_FRAMES = 15
bad_ts = Kinect.detect_bad_timestamps(Kinect.timestamps_from_file_list(file_list))
if not bad_ts:
return file_list
last_bad = max(bad_ts)
if last_bad >= MAX_INITIAL_BAD_FRAMES:
raise Exception('Only 15 initial bad frames are allowed, but last bad frame is %d' % last_bad)
for i in range(last_bad + 1):
os.remove(file_list[i])
file_list = file_list[last_bad+1:]
return file_list | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier if_statement not_operator identifier block return_statement identifier expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier for_statement identifier call identifier argument_list binary_operator identifier integer block expression_statement call attribute identifier identifier argument_list subscript identifier identifier expression_statement assignment identifier subscript identifier slice binary_operator identifier integer return_statement identifier | Given a list of image files, find bad frames, remove them and modify file_list |
def _get_geneid2nt(nts):
geneid2nt = {}
for ntd in nts:
geneid = ntd.GeneID
if geneid not in geneid2nt:
geneid2nt[geneid] = ntd
else:
print("DUPLICATE GeneID FOUND {N:9} {SYM}".format(N=geneid, SYM=ntd.Symbol))
return geneid2nt | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier identifier block expression_statement assignment subscript identifier identifier identifier else_clause block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier return_statement identifier | Get geneid2nt given a list of namedtuples. |
def once(ctx, name):
from kibitzr.app import Application
app = Application()
sys.exit(app.run(once=True, log_level=ctx.obj['log_level'], names=name)) | module function_definition identifier parameters identifier identifier block import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier true keyword_argument identifier subscript attribute identifier identifier string string_start string_content string_end keyword_argument identifier identifier | Run kibitzr checks once and exit |
def load_genotypes(self):
if DataParser.compressed_pedigree:
self.genotype_file = gzip.open("%s.gz" % self.tped_file, 'rb')
else:
self.genotype_file = open(self.tped_file)
self.filter_missing() | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list binary_operator string string_start string_content string_end attribute identifier identifier string string_start string_content string_end else_clause block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list | This really just intializes the file by opening it up. |
def process_request(self, request_object):
identifier = request_object.identifier
resource = request_object.entity_cls.get(identifier)
return ResponseSuccess(Status.SUCCESS, resource) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement call identifier argument_list attribute identifier identifier identifier | Fetch Resource and return Entity |
def write(write_entry: FILE_WRITE_ENTRY):
output_path = environ.paths.clean(write_entry.path)
make_output_directory(output_path)
writer.write_file(output_path, write_entry.contents) | module function_definition identifier parameters typed_parameter identifier type identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier | Writes the contents of the specified file entry to its destination path. |
def install_timers(config, context):
timers = []
if config.get('capture_timeout_warnings'):
timeout_threshold = config.get('timeout_warning_threshold')
time_remaining = context.get_remaining_time_in_millis() / 1000
timers.append(Timer(time_remaining * timeout_threshold, timeout_warning, (config, context)))
timers.append(Timer(max(time_remaining - .5, 0), timeout_error, [config]))
if config.get('capture_memory_warnings'):
timers.append(Timer(.5, memory_warning, (config, context)))
for t in timers:
t.start()
return timers | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list integer expression_statement call attribute identifier identifier argument_list call identifier argument_list binary_operator identifier identifier identifier tuple identifier identifier expression_statement call attribute identifier identifier argument_list call identifier argument_list call identifier argument_list binary_operator identifier float integer identifier list identifier if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list call identifier argument_list float identifier tuple identifier identifier for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list return_statement identifier | Create the timers as specified by the plugin configuration. |
def keys_to_string(data):
if isinstance(data, dict):
for key in list(data.keys()):
if isinstance(key, six.string_types):
value = data[key]
val = keys_to_string(value)
del data[key]
data[key.encode("utf8", "ignore")] = val
return data | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block for_statement identifier call identifier argument_list call attribute identifier identifier argument_list block if_statement call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier subscript identifier identifier expression_statement assignment identifier call identifier argument_list identifier delete_statement subscript identifier identifier expression_statement assignment subscript identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end identifier return_statement identifier | Function to convert all the unicode keys in string keys |
def _get_technologies():
tech = ''
technologies = pyconnman.ConnManager().get_technologies()
for path, params in technologies:
tech += '{0}\n\tName = {1}\n\tType = {2}\n\tPowered = {3}\n\tConnected = {4}\n'.format(
path, params['Name'], params['Type'], params['Powered'] == 1, params['Connected'] == 1)
return tech | module function_definition identifier parameters block expression_statement assignment identifier string string_start string_end expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list for_statement pattern_list identifier identifier identifier block expression_statement augmented_assignment identifier call attribute string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence string_end identifier argument_list identifier subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end comparison_operator subscript identifier string string_start string_content string_end integer comparison_operator subscript identifier string string_start string_content string_end integer return_statement identifier | Returns the technologies of connman |
def can_write(self):
sm = getSecurityManager()
permission = permissions.ModifyPortalContent
if not sm.checkPermission(permission, self.context):
return False
return True | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier attribute identifier identifier if_statement not_operator call attribute identifier identifier argument_list identifier attribute identifier identifier block return_statement false return_statement true | Check if the field is writeable |
def _no_answer_do_retry(self, pk, pattern):
logger.info('Resending for pattern %s', pattern)
self.send_packet(pk, expected_reply=pattern, resend=True) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier true | Resend packets that we have not gotten answers to |
def ib_group_member_list(self, group_id):
req_hook = 'pod/v1/admin/group/' + group_id + '/membership/list'
req_args = None
status_code, response = self.__rest__.GET_query(req_hook, req_args)
self.logger.debug('%s: %s' % (status_code, response))
return status_code, response | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator binary_operator string string_start string_content string_end identifier string string_start string_content string_end expression_statement assignment identifier none expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier return_statement expression_list identifier identifier | ib group member list |
def deserialize(self, value, **kwargs):
if self.allow_scalar and not isinstance(value, (list, tuple)):
value = [value]
value = super(List, self).deserialize(value)
result = []
errors = []
for index, val in enumerate(value):
try:
result.append(self.item_type.deserialize(val, **kwargs))
except ValidationError as exc:
exc.index = index
errors.append(exc)
if errors:
raise ValidationError(errors)
return result | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block if_statement boolean_operator attribute identifier identifier not_operator call identifier argument_list identifier tuple identifier identifier block expression_statement assignment identifier list identifier expression_statement assignment identifier call attribute call identifier argument_list identifier identifier identifier argument_list identifier expression_statement assignment identifier list expression_statement assignment identifier list for_statement pattern_list identifier identifier call identifier argument_list identifier block try_statement block expression_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier dictionary_splat identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement assignment attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier if_statement identifier block raise_statement call identifier argument_list identifier return_statement identifier | Deserialize every item of the list. |
def from_gene_ids(cls, gene_ids: List[str]):
genes = [ExpGene(id_) for id_ in gene_ids]
return cls.from_genes(genes) | module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier block expression_statement assignment identifier list_comprehension call identifier argument_list identifier for_in_clause identifier identifier return_statement call attribute identifier identifier argument_list identifier | Initialize instance from gene IDs. |
def change_password(self, new_password):
self.set_password(new_password)
self.save()
password_changed.send(sender=self.__class__, user=self) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier | Changes password and sends a signal |
def put_text(self, key, text):
with open(key, "w") as fh:
fh.write(text) | module function_definition identifier parameters identifier identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier | Put the text into the storage associated with the key. |
def identify_core(core):
for datatype, identifier in {
int: _identify_scaler,
numpy.int8: _identify_scaler,
numpy.int16: _identify_scaler,
numpy.int32: _identify_scaler,
numpy.int64: _identify_scaler,
float: _identify_scaler,
numpy.float16: _identify_scaler,
numpy.float32: _identify_scaler,
numpy.float64: _identify_scaler,
chaospy.poly.base.Poly: _identify_poly,
dict: _identify_dict,
numpy.ndarray: _identify_iterable,
list: _identify_iterable,
tuple: _identify_iterable,
}.items():
if isinstance(core, datatype):
return identifier(core)
raise TypeError(
"Poly arg: 'core' is not a valid type " + repr(core)) | module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute dictionary pair identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair attribute identifier identifier identifier pair attribute attribute attribute identifier identifier identifier identifier identifier pair identifier identifier pair attribute identifier identifier identifier pair identifier identifier pair identifier identifier identifier argument_list block if_statement call identifier argument_list identifier identifier block return_statement call identifier argument_list identifier raise_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | Identify the polynomial argument. |
def chmod(self, tarinfo, targetpath):
if hasattr(os, 'chmod'):
try:
os.chmod(targetpath, tarinfo.mode)
except EnvironmentError as e:
raise ExtractError("could not change mode") | module function_definition identifier parameters identifier identifier identifier block if_statement call identifier argument_list identifier string string_start string_content string_end block try_statement block expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier except_clause as_pattern identifier as_pattern_target identifier block raise_statement call identifier argument_list string string_start string_content string_end | Set file permissions of targetpath according to tarinfo. |
def getDiscountedBulkPrice(self):
price = self.getBulkPrice()
price = price and price or 0
discount = self.bika_setup.getMemberDiscount()
discount = discount and discount or 0
return float(price) - (float(price) * float(discount)) / 100 | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier boolean_operator boolean_operator identifier identifier integer expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier boolean_operator boolean_operator identifier identifier integer return_statement binary_operator call identifier argument_list identifier binary_operator parenthesized_expression binary_operator call identifier argument_list identifier call identifier argument_list identifier integer | Compute discounted bulk discount excl. VAT |
def add_func(self, transmute_func, transmute_context):
swagger_path = transmute_func.get_swagger_path(transmute_context)
for p in transmute_func.paths:
self.add_path(p, swagger_path) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier identifier | add a transmute function's swagger definition to the spec |
def reset(self):
status = self.m_objPCANBasic.Reset(self.m_PcanHandle)
return status == PCAN_ERROR_OK | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement comparison_operator identifier identifier | Command the PCAN driver to reset the bus after an error. |
def getErrorResponse(self, errorCode, errorDescr):
self.errorCode = errorCode
self.errorDescr = errorDescr
self.response = "yes"
return self | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier string string_start string_content string_end return_statement identifier | This methods sets error attributes of an external method object. |
def _compile(self, target, results_dir, source):
obj = self._objpath(target, results_dir, source)
safe_mkdir_for(obj)
abs_source = os.path.join(get_buildroot(), source)
include_dirs = []
for dep in target.dependencies:
if self.is_library(dep):
include_dirs.extend([os.path.join(get_buildroot(), dep.target_base)])
cmd = [self.cpp_toolchain.compiler]
cmd.extend(['-c'])
cmd.extend(('-I{0}'.format(i) for i in include_dirs))
cmd.extend(['-o' + obj, abs_source])
cmd.extend(self.get_options().cc_options)
with self.context.new_workunit(name='cpp-compile', labels=[WorkUnitLabel.COMPILER]) as workunit:
self.run_command(cmd, workunit)
self.context.log.info('Built c++ object: {0}'.format(obj)) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier expression_statement call identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call identifier argument_list identifier expression_statement assignment identifier list for_statement identifier attribute identifier identifier block if_statement call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list list call attribute attribute identifier identifier identifier argument_list call identifier argument_list attribute identifier identifier expression_statement assignment identifier list attribute attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list generator_expression call attribute string string_start string_content string_end identifier argument_list identifier for_in_clause identifier identifier expression_statement call attribute identifier identifier argument_list list binary_operator string string_start string_content string_end identifier identifier expression_statement call attribute identifier identifier argument_list attribute call attribute identifier identifier argument_list identifier with_statement with_clause with_item as_pattern call attribute attribute identifier identifier identifier argument_list keyword_argument identifier string string_start string_content string_end keyword_argument identifier list attribute identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier | Compile given source to an object file. |
def _parse_template_or_argument(self):
self._head += 2
braces = 2
while self._read() == "{":
self._head += 1
braces += 1
has_content = False
self._push()
while braces:
if braces == 1:
return self._emit_text_then_stack("{")
if braces == 2:
try:
self._parse_template(has_content)
except BadRoute:
return self._emit_text_then_stack("{{")
break
try:
self._parse_argument()
braces -= 3
except BadRoute:
try:
self._parse_template(has_content)
braces -= 2
except BadRoute:
return self._emit_text_then_stack("{" * braces)
if braces:
has_content = True
self._head += 1
self._emit_all(self._pop())
if self._context & contexts.FAIL_NEXT:
self._context ^= contexts.FAIL_NEXT | module function_definition identifier parameters identifier block expression_statement augmented_assignment attribute identifier identifier integer expression_statement assignment identifier integer while_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement augmented_assignment attribute identifier identifier integer expression_statement augmented_assignment identifier integer expression_statement assignment identifier false expression_statement call attribute identifier identifier argument_list while_statement identifier block if_statement comparison_operator identifier integer block return_statement call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator identifier integer block try_statement block expression_statement call attribute identifier identifier argument_list identifier except_clause identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end break_statement try_statement block expression_statement call attribute identifier identifier argument_list expression_statement augmented_assignment identifier integer except_clause identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier expression_statement augmented_assignment identifier integer except_clause identifier block return_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier if_statement identifier block expression_statement assignment identifier true expression_statement augmented_assignment attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list if_statement binary_operator attribute identifier identifier attribute identifier identifier block expression_statement augmented_assignment attribute identifier identifier attribute identifier identifier | Parse a template or argument at the head of the wikicode string. |
def calc_secondary_parameters(self):
self.a = self.x/(2.*self.d**.5)
self.b = self.u/(2.*self.d**.5) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier parenthesized_expression binary_operator float binary_operator attribute identifier identifier float expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier parenthesized_expression binary_operator float binary_operator attribute identifier identifier float | Determine the values of the secondary parameters `a` and `b`. |
def _gather(self, *args, **kwargs):
propagate = kwargs.pop('propagate', True)
return (self.to_python(reply, propagate=propagate)
for reply in self.actor._collect_replies(*args, **kwargs)) | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end true return_statement generator_expression call attribute identifier identifier argument_list identifier keyword_argument identifier identifier for_in_clause identifier call attribute attribute identifier identifier identifier argument_list list_splat identifier dictionary_splat identifier | Generator over the results |
def compress(samples, run_parallel):
to_cram = []
finished = []
for data in [x[0] for x in samples]:
if "cram" in dd.get_archive(data) or "cram-lossless" in dd.get_archive(data):
to_cram.append([data])
else:
finished.append([data])
crammed = run_parallel("archive_to_cram", to_cram)
return finished + crammed | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list for_statement identifier list_comprehension subscript identifier integer for_in_clause identifier identifier block if_statement boolean_operator comparison_operator string string_start string_content string_end call attribute identifier identifier argument_list identifier comparison_operator string string_start string_content string_end call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list list identifier else_clause block expression_statement call attribute identifier identifier argument_list list identifier expression_statement assignment identifier call identifier argument_list string string_start string_content string_end identifier return_statement binary_operator identifier identifier | Perform compression of output files for long term storage. |
def run(agent_id, force=False):
if agent_id is None:
agent_list = LiveSyncAgent.find_all()
else:
agent = LiveSyncAgent.find_first(id=agent_id)
if agent is None:
print 'No such agent'
return
agent_list = [agent]
for agent in agent_list:
if agent.backend is None:
print cformat('Skipping agent: %{red!}{}%{reset} (backend not found)').format(agent.name)
continue
if not agent.initial_data_exported and not force:
print cformat('Skipping agent: %{red!}{}%{reset} (initial export not performed)').format(agent.name)
continue
print cformat('Running agent: %{white!}{}%{reset}').format(agent.name)
try:
agent.create_backend().run()
db.session.commit()
except:
db.session.rollback()
raise | module function_definition identifier parameters identifier default_parameter identifier false block if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier if_statement comparison_operator identifier none block print_statement string string_start string_content string_end return_statement expression_statement assignment identifier list identifier for_statement identifier identifier block if_statement comparison_operator attribute identifier identifier none block print_statement call attribute call identifier argument_list string string_start string_content string_end identifier argument_list attribute identifier identifier continue_statement if_statement boolean_operator not_operator attribute identifier identifier not_operator identifier block print_statement call attribute call identifier argument_list string string_start string_content string_end identifier argument_list attribute identifier identifier continue_statement print_statement call attribute call identifier argument_list string string_start string_content string_end identifier argument_list attribute identifier identifier try_statement block expression_statement call attribute call attribute identifier identifier argument_list identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list except_clause block expression_statement call attribute attribute identifier identifier identifier argument_list raise_statement | Runs the livesync agent |
def from_dict(cls, d):
structure = SlabEntry.from_dict(d["structure"])
energy = SlabEntry.from_dict(d["energy"])
miller_index = d["miller_index"]
label = d["label"]
coverage = d["coverage"]
adsorbates = d["adsorbates"]
clean_entry = d["clean_entry"] = self.clean_entry
return SlabEntry(structure, energy, miller_index, label=label,
coverage=coverage, adsorbates=adsorbates,
clean_entry=clean_entry) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier assignment subscript identifier string string_start string_content string_end attribute identifier identifier return_statement call identifier argument_list identifier identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Returns a SlabEntry by reading in an dictionary |
def use_comparative_comment_view(self):
self._object_views['comment'] = COMPARATIVE
for session in self._get_provider_sessions():
try:
session.use_comparative_comment_view()
except AttributeError:
pass | module function_definition identifier parameters identifier block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end identifier for_statement identifier call attribute identifier identifier argument_list block try_statement block expression_statement call attribute identifier identifier argument_list except_clause identifier block pass_statement | Pass through to provider CommentLookupSession.use_comparative_comment_view |
def _copy(self):
copied_uri = Uri(self.uri.scheme, self.uri.host, self.uri.port,
self.uri.path, self.uri.query.copy())
new_request = HttpRequest(uri=copied_uri, method=self.method,
headers=self.headers.copy())
new_request._body_parts = self._body_parts[:]
return new_request | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier call attribute attribute attribute identifier identifier identifier identifier argument_list expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment attribute identifier identifier subscript attribute identifier identifier slice return_statement identifier | Creates a deep copy of this request. |
def add_synonym(self, other):
self.synonyms.extend(other.synonyms)
other.synonyms = self.synonyms | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier | Every word in a group of synonyms shares the same list. |
def meth_wdl(args):
r = fapi.get_repository_method(args.namespace, args.method,
args.snapshot_id, True)
fapi._check_response_code(r, 200)
return r.text | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier true expression_statement call attribute identifier identifier argument_list identifier integer return_statement attribute identifier identifier | Retrieve WDL for given version of a repository method |
def _instantiate_app(self, target_cls, kwargs):
parse_context = ParseContext(kwargs['address'].spec_path, dict())
bundleprops_factory = Bundle(parse_context)
kwargs['bundles'] = [
bundleprops_factory.create_bundle_props(bundle)
for bundle in kwargs['bundles']
]
return target_cls(build_graph=self, **kwargs) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list attribute subscript identifier string string_start string_content string_end identifier call identifier argument_list expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_end list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier subscript identifier string string_start string_content string_end return_statement call identifier argument_list keyword_argument identifier identifier dictionary_splat identifier | For App targets, convert BundleAdaptor to BundleProps. |
def addBiosample(self, biosample):
id_ = biosample.getId()
self._biosampleIdMap[id_] = biosample
self._biosampleIds.append(id_)
self._biosampleNameMap[biosample.getName()] = biosample | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment subscript attribute identifier identifier call attribute identifier identifier argument_list identifier | Adds the specified biosample to this dataset. |
def send_text(hwnd, txt):
try:
for c in txt:
if c == '\n':
win32api.SendMessage(hwnd, win32con.WM_KEYDOWN, win32con.VK_RETURN, 0)
win32api.SendMessage(hwnd, win32con.WM_KEYUP, win32con.VK_RETURN, 0)
else:
win32api.SendMessage(hwnd, win32con.WM_CHAR, ord(c), 0)
except Exception as ex:
print('error calling SendMessage ' + str(ex)) | module function_definition identifier parameters identifier identifier block try_statement block for_statement identifier identifier block if_statement comparison_operator identifier string string_start string_content escape_sequence string_end block expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier integer else_clause block expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier call identifier argument_list identifier integer except_clause as_pattern identifier as_pattern_target identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | sends the text 'txt' to the window handle hwnd using SendMessage |
def from_eocube(eocube, ji):
eocubewin = EOCubeChunk(ji, eocube.df_layers, eocube.chunksize, eocube.wdir)
return eocubewin | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier return_statement identifier | Create a EOCubeChunk object from an EOCube object. |
def close(self):
self.run_info['end'] = datetime.now()
self._p.stdin.close()
for line in self._p.stdout:
if line.startswith('NOTE: tsdb run:'):
self._read_run_info(line)
else:
logging.debug('ACE cleanup: {}'.format(line.rstrip()))
retval = self._p.wait()
return retval | module function_definition identifier parameters identifier block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end call attribute identifier identifier argument_list expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list for_statement identifier attribute attribute identifier identifier identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list return_statement identifier | Close the ACE process and return the process's exit code. |
def _clean_dirty(self, obj=None):
obj = obj or self
obj.__dict__['_dirty_attributes'].clear()
obj._dirty = False
for key, val in vars(obj).items():
if isinstance(val, BaseObject):
self._clean_dirty(val)
else:
func = getattr(val, '_clean_dirty', None)
if callable(func):
func() | module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier boolean_operator identifier identifier expression_statement call attribute subscript attribute identifier identifier string string_start string_content string_end identifier argument_list expression_statement assignment attribute identifier identifier false for_statement pattern_list identifier identifier call attribute call identifier argument_list identifier identifier argument_list block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end none if_statement call identifier argument_list identifier block expression_statement call identifier argument_list | Recursively clean self and all child objects. |
def in_scope(self, scope: str):
old_scope = self.resolution_scope
self.resolution_scope = urlparse.urljoin(old_scope, scope)
try:
yield
finally:
self.resolution_scope = old_scope | module function_definition identifier parameters identifier typed_parameter identifier type identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier identifier try_statement block expression_statement yield finally_clause block expression_statement assignment attribute identifier identifier identifier | Context manager to handle current scope. |
def _validate_config():
if not isinstance(__opts__['azurefs'], list):
log.error('azurefs configuration is not formed as a list, skipping azurefs')
return False
for container in __opts__['azurefs']:
if not isinstance(container, dict):
log.error(
'One or more entries in the azurefs configuration list are '
'not formed as a dict. Skipping azurefs: %s', container
)
return False
if 'account_name' not in container or 'container_name' not in container:
log.error(
'An azurefs container configuration is missing either an '
'account_name or a container_name: %s', container
)
return False
return True | module function_definition identifier parameters block if_statement not_operator call identifier argument_list subscript identifier string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement false for_statement identifier subscript identifier string string_start string_content string_end block if_statement not_operator call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end identifier return_statement false if_statement boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end identifier return_statement false return_statement true | Validate azurefs config, return False if it doesn't validate |
def remove_null(obj):
if isinstance(obj, set):
try:
obj.remove(None)
except:
pass
elif isinstance(obj, list):
for item in obj:
if not is_not_null(item):
obj.remove(item)
return obj | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list none except_clause block pass_statement elif_clause call identifier argument_list identifier identifier block for_statement identifier identifier block if_statement not_operator call identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | reads through a list or set and strips any null values |
def _extract_gaussian_gradient_magnitude(image, mask = slice(None), sigma = 1, voxelspacing = None):
if voxelspacing is None:
voxelspacing = [1.] * image.ndim
sigma = _create_structure_array(sigma, voxelspacing)
return _extract_intensities(scipy_gaussian_gradient_magnitude(image, sigma), mask) | module function_definition identifier parameters identifier default_parameter identifier call identifier argument_list none default_parameter identifier integer default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier binary_operator list float attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier identifier return_statement call identifier argument_list call identifier argument_list identifier identifier identifier | Internal, single-image version of `gaussian_gradient_magnitude`. |
def ReadIntoObject(buff, index, value_obj, length=0):
raw_data = value_obj.GetRawData()
count = 0
for (encoded_tag, encoded_length, encoded_field) in SplitBuffer(
buff, index=index, length=length):
type_info_obj = value_obj.type_infos_by_encoded_tag.get(encoded_tag)
wire_format = (encoded_tag, encoded_length, encoded_field)
if type_info_obj is None:
raw_data[count] = (None, wire_format, None)
count += 1
elif type_info_obj.__class__ is ProtoList:
value_obj.Get(type_info_obj.name).wrapped_list.append((None, wire_format))
else:
raw_data[type_info_obj.name] = (None, wire_format, type_info_obj)
value_obj.SetRawData(raw_data) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier integer for_statement tuple_pattern identifier identifier identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier tuple identifier identifier identifier if_statement comparison_operator identifier none block expression_statement assignment subscript identifier identifier tuple none identifier none expression_statement augmented_assignment identifier integer elif_clause comparison_operator attribute identifier identifier identifier block expression_statement call attribute attribute call attribute identifier identifier argument_list attribute identifier identifier identifier identifier argument_list tuple none identifier else_clause block expression_statement assignment subscript identifier attribute identifier identifier tuple none identifier identifier expression_statement call attribute identifier identifier argument_list identifier | Reads all tags until the next end group and store in the value_obj. |
def _format_base_path(self, api_name):
name = self.app_name
if self.app_name != api_name:
name = '{0}-{1}'.format(self.app_name, api_name)
return name | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier identifier return_statement identifier | Format the base path name. |
def save_activity(self, activity_form, *args, **kwargs):
if activity_form.is_for_update():
return self.update_activity(activity_form, *args, **kwargs)
else:
return self.create_activity(activity_form, *args, **kwargs) | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement call attribute identifier identifier argument_list block return_statement call attribute identifier identifier argument_list identifier list_splat identifier dictionary_splat identifier else_clause block return_statement call attribute identifier identifier argument_list identifier list_splat identifier dictionary_splat identifier | Pass through to provider ActivityAdminSession.update_activity |
def _join_strings(x):
for i in range(len(x)-1):
if x[i]['t'] == 'Str' and x[i+1]['t'] == 'Str':
x[i]['c'] += x[i+1]['c']
del x[i+1]
return None
return True | module function_definition identifier parameters identifier block for_statement identifier call identifier argument_list binary_operator call identifier argument_list identifier integer block if_statement boolean_operator comparison_operator subscript subscript identifier identifier string string_start string_content string_end string string_start string_content string_end comparison_operator subscript subscript identifier binary_operator identifier integer string string_start string_content string_end string string_start string_content string_end block expression_statement augmented_assignment subscript subscript identifier identifier string string_start string_content string_end subscript subscript identifier binary_operator identifier integer string string_start string_content string_end delete_statement subscript identifier binary_operator identifier integer return_statement none return_statement true | Joins adjacent Str elements found in the element list 'x'. |
def Regions(self,
skip_mapped_files=False,
skip_shared_regions=False,
skip_executable_regions=False,
skip_readonly_regions=False):
try:
maps_file = open("/proc/" + str(self.pid) + "/maps", "r")
except OSError as e:
raise process_error.ProcessError(e)
with maps_file:
for line in maps_file:
m = self.maps_re.match(line)
if not m:
continue
start = int(m.group(1), 16)
end = int(m.group(2), 16)
region_protec = m.group(3)
inode = int(m.group(6))
if "r" in region_protec:
if skip_mapped_files and inode != 0:
continue
if skip_shared_regions and "s" in region_protec:
continue
if skip_executable_regions and "x" in region_protec:
continue
if skip_readonly_regions and "w" not in region_protec:
continue
yield start, end - start | module function_definition identifier parameters identifier default_parameter identifier false default_parameter identifier false default_parameter identifier false default_parameter identifier false block try_statement block expression_statement assignment identifier call identifier argument_list binary_operator binary_operator string string_start string_content string_end call identifier argument_list attribute identifier identifier string string_start string_content string_end string string_start string_content string_end except_clause as_pattern identifier as_pattern_target identifier block raise_statement call attribute identifier identifier argument_list identifier with_statement with_clause with_item identifier block for_statement identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier if_statement not_operator identifier block continue_statement expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list integer integer expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list integer integer expression_statement assignment identifier call attribute identifier identifier argument_list integer expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list integer if_statement comparison_operator string string_start string_content string_end identifier block if_statement boolean_operator identifier comparison_operator identifier integer block continue_statement if_statement boolean_operator identifier comparison_operator string string_start string_content string_end identifier block continue_statement if_statement boolean_operator identifier comparison_operator string string_start string_content string_end identifier block continue_statement if_statement boolean_operator identifier comparison_operator string string_start string_content string_end identifier block continue_statement expression_statement yield expression_list identifier binary_operator identifier identifier | Returns an iterator over the readable regions for this process. |
def rdf_suffix(fmt: str) -> str:
for k, v in SUFFIX_FORMAT_MAP.items():
if fmt == v:
return k
return 'rdf' | module function_definition identifier parameters typed_parameter identifier type identifier type identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier identifier block return_statement identifier return_statement string string_start string_content string_end | Map the RDF format to the approproate suffix |
def add_cmd_output(self, cmds, suggest_filename=None,
root_symlink=None, timeout=300, stderr=True,
chroot=True, runat=None, env=None, binary=False,
sizelimit=None, pred=None):
if isinstance(cmds, six.string_types):
cmds = [cmds]
if len(cmds) > 1 and (suggest_filename or root_symlink):
self._log_warn("ambiguous filename or symlink for command list")
if sizelimit is None:
sizelimit = self.get_option("log_size")
for cmd in cmds:
self._add_cmd_output(cmd, suggest_filename=suggest_filename,
root_symlink=root_symlink, timeout=timeout,
stderr=stderr, chroot=chroot, runat=runat,
env=env, binary=binary, sizelimit=sizelimit,
pred=pred) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier integer default_parameter identifier true default_parameter identifier true default_parameter identifier none default_parameter identifier none default_parameter identifier false default_parameter identifier none default_parameter identifier none block if_statement call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier list identifier if_statement boolean_operator comparison_operator call identifier argument_list identifier integer parenthesized_expression boolean_operator identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Run a program or a list of programs and collect the output |
def _get_relationship_cell_val(self, obj, column):
val = ""
key = column['key']
related_key = column.get('related_key', None)
related_obj = getattr(obj, key, None)
if related_obj is None:
return ""
if column['__col__'].uselist:
if related_key is not None:
if column.get('index') is not None:
if len(related_obj) > column['index']:
rel_obj = related_obj[column['index']]
val = self._get_formatted_val(
rel_obj,
related_key,
column,
)
else:
_vals = []
for rel_obj in related_obj:
_vals.append(
self._get_formatted_val(
rel_obj,
related_key,
column,
)
)
val = '\n'.join(_vals)
else:
if related_key is not None:
val = self._get_formatted_val(related_obj, related_key, column)
return val | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier string string_start string_end expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none expression_statement assignment identifier call identifier argument_list identifier identifier none if_statement comparison_operator identifier none block return_statement string string_start string_end if_statement attribute subscript identifier string string_start string_content string_end identifier block if_statement comparison_operator identifier none block if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end none block if_statement comparison_operator call identifier argument_list identifier subscript identifier string string_start string_content string_end block expression_statement assignment identifier subscript identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier else_clause block expression_statement assignment identifier list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier identifier identifier expression_statement assignment identifier call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier else_clause block if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier return_statement identifier | Return the value to insert in a relationship cell |
def listen_tta(self, target, timeout):
info = "{device} does not support listen as Type A Target"
raise nfc.clf.UnsupportedTargetError(info.format(device=self)) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier string string_start string_content string_end raise_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier identifier | Listen as Type A Target is not supported. |
def process(self):
response = None
try:
payload = self.receive()
method, args, ref = self.parse(payload)
response = self.execute(method, args, ref)
except AuthenticateError as exception:
logging.error(
'Service error while authenticating request: {}'
.format(exception), exc_info=1)
except AuthenticatorInvalidSignature as exception:
logging.error(
'Service error while authenticating request: {}'
.format(exception), exc_info=1)
except DecodeError as exception:
logging.error(
'Service error while decoding request: {}'
.format(exception), exc_info=1)
except RequestParseError as exception:
logging.error(
'Service error while parsing request: {}'
.format(exception), exc_info=1)
else:
logging.debug('Service received payload: {}'.format(payload))
if response:
self.send(response)
else:
self.send('') | module function_definition identifier parameters identifier block expression_statement assignment identifier none try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier integer except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier integer except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier integer except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier keyword_argument identifier integer else_clause block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement call attribute identifier identifier argument_list string string_start string_end | Receive data from socket and process request |
def setup_logging(self):
is_custom_logging = len(self.options.logging_config) > 0
is_custom_logging = is_custom_logging and os.path.isfile(self.options.logging_config)
is_custom_logging = is_custom_logging and not self.options.dry_run
if is_custom_logging:
Logger.configure_by_file(self.options.logging_config)
else:
logging_format = "%(asctime)-15s - %(name)s - %(message)s"
if self.options.dry_run:
logging_format = "%(name)s - %(message)s"
Logger.configure_default(logging_format, self.logging_level) | module function_definition identifier parameters identifier block expression_statement assignment identifier comparison_operator call identifier argument_list attribute attribute identifier identifier identifier integer expression_statement assignment identifier boolean_operator identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier boolean_operator identifier not_operator attribute attribute identifier identifier identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list attribute attribute identifier identifier identifier else_clause block expression_statement assignment identifier string string_start string_content string_end if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier attribute identifier identifier | Setup of application logging. |
def _count_classified_pixels(self):
class_values = self.class_dictionary.values()
classification_count = np.array([[[np.count_nonzero(prediction[np.nonzero(mask)] == class_val)
for prediction, mask in zip(self.classification_masks, masktype)]
for masktype in self.truth_masks]
for class_val in class_values])
classification_count = np.moveaxis(classification_count, 0, -1)
classification_count = np.moveaxis(classification_count, 0, -2)
if self.pixel_classification_counts is None:
self.pixel_classification_counts = np.copy(classification_count)
else:
self.pixel_classification_counts = np.concatenate((self.pixel_classification_counts, classification_count)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list list_comprehension list_comprehension list_comprehension call attribute identifier identifier argument_list comparison_operator subscript identifier call attribute identifier identifier argument_list identifier identifier for_in_clause pattern_list identifier identifier call identifier argument_list attribute identifier identifier identifier for_in_clause identifier attribute identifier identifier for_in_clause identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier integer unary_operator integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier integer unary_operator integer if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier else_clause block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list tuple attribute identifier identifier identifier | Count the pixels belonging to each classified class. |
def remove_all_cts_records_by(file_name, crypto_idfp):
db = XonoticDB.load_path(file_name)
db.remove_all_cts_records_by(crypto_idfp)
db.save(file_name) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | Remove all cts records set by player with CRYPTO_IDFP |
def nic_name_to_host(nic_name):
from netifaces import ifaddresses, AF_INET
host = ifaddresses(nic_name).setdefault(AF_INET, [{'addr': 'No IP addr'}] )[0]['addr']
return(host) | module function_definition identifier parameters identifier block import_from_statement dotted_name identifier dotted_name identifier dotted_name identifier expression_statement assignment identifier subscript subscript call attribute call identifier argument_list identifier identifier argument_list identifier list dictionary pair string string_start string_content string_end string string_start string_content string_end integer string string_start string_content string_end return_statement parenthesized_expression identifier | helper function to translate the name of a network card into a valid host name |
def clean(self):
result = super(User, self).clean()
result['verified'] = 'verification_hash' not in self._resource
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier identifier argument_list expression_statement assignment subscript identifier string string_start string_content string_end comparison_operator string string_start string_content string_end attribute identifier identifier return_statement identifier | Verified value is derived from whether user has a verification hash |
def exists(self):
try:
self.stat()
except OSError as e:
if e.errno not in (ENOENT, ENOTDIR):
raise
return False
return True | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block if_statement comparison_operator attribute identifier identifier tuple identifier identifier block raise_statement return_statement false return_statement true | Whether this path exists. |
def _safe_run_theta(input_file, out_dir, output_ext, args, data):
out_file = os.path.join(out_dir, _split_theta_ext(input_file) + output_ext)
skip_file = out_file + ".skipped"
if utils.file_exists(skip_file):
return None
if not utils.file_exists(out_file):
with file_transaction(data, out_dir) as tx_out_dir:
utils.safe_makedir(tx_out_dir)
cmd = _get_cmd("RunTHetA.py") + args + \
[input_file, "--NUM_PROCESSES", dd.get_cores(data),
"--FORCE", "-d", tx_out_dir]
try:
do.run(cmd, "Run THetA to calculate purity", log_error=False)
except subprocess.CalledProcessError as msg:
if ("Number of intervals must be greater than 1" in str(msg) or
"This sample isn't a good candidate for THetA analysis" in str(msg)):
with open(os.path.join(tx_out_dir, os.path.basename(skip_file)), "w") as out_handle:
out_handle.write("Expected TheTA failure, skipping")
return None
else:
raise
return out_file | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator call identifier argument_list identifier identifier expression_statement assignment identifier binary_operator identifier string string_start string_content string_end if_statement call attribute identifier identifier argument_list identifier block return_statement none if_statement not_operator call attribute identifier identifier argument_list identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator binary_operator call identifier argument_list string string_start string_content string_end identifier line_continuation list identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier string string_start string_content string_end string string_start string_content string_end identifier try_statement block expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end keyword_argument identifier false except_clause as_pattern attribute identifier identifier as_pattern_target identifier block if_statement parenthesized_expression boolean_operator comparison_operator string string_start string_content string_end call identifier argument_list identifier comparison_operator string string_start string_content string_end call identifier argument_list identifier block with_statement with_clause with_item as_pattern call identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement none else_clause block raise_statement return_statement identifier | Run THetA, catching and continuing on any errors. |
def _clone_reverses(self, old_reverses):
for ctype, reverses in old_reverses.items():
for parts in reverses.values():
sub_objs = parts[1]
field_name = parts[0]
attrs = {}
for sub_obj in sub_objs:
if ctype != 'm2m' and not attrs:
field = sub_obj._meta.get_field(field_name)
attrs = {
field.column: getattr(self, field.rel.field_name)
}
sub_obj._clone(**attrs)
if ctype == 'm2m':
setattr(self, field_name, sub_objs) | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier dictionary for_statement identifier identifier block if_statement boolean_operator comparison_operator identifier string string_start string_content string_end not_operator identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier dictionary pair attribute identifier identifier call identifier argument_list identifier attribute attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list dictionary_splat identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement call identifier argument_list identifier identifier identifier | Clones all the objects that were previously gathered. |
def input(self, prompt, default=None, show_default=True):
return click.prompt(prompt, default=default, show_default=show_default) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier true block return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier | Provide a command prompt. |
def instance_signals_and_handlers(cls, instance):
isignals = cls._signals.copy()
ihandlers = cls._build_instance_handler_mapping(
instance,
cls._signal_handlers
)
return isignals, ihandlers | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier return_statement expression_list identifier identifier | Calculate per-instance signals and handlers. |
def build_extra_headers(request, proxyMode, orgaMode, currentOrga):
things_to_add = {}
if proxyMode:
for prop in settings.PIAPI_USERDATA:
if hasattr(request.user, prop):
things_to_add['user_' + prop] = getattr(request.user, prop)
if orgaMode:
things_to_add['orga_pk'] = currentOrga.pk
things_to_add['orga_name'] = currentOrga.name
things_to_add['orga_codops'] = currentOrga.ebu_codops
things_to_add['base_url'] = baseURI
if request and hasattr(request, 'META'):
if 'REMOTE_ADDR' in request.META:
things_to_add['remote-addr'] = request.META['REMOTE_ADDR']
if 'HTTP_X_FORWARDED_FOR' in request.META and getattr(settings, 'HONOR_X_FORWARDED_FOR'):
things_to_add['remote-addr'] = request.META['HTTP_X_FORWARDED_FOR']
for meta_header, dest_header in [('HTTP_IF_NONE_MATCH', 'If-None-Match'), ('HTTP_ORIGIN', 'Origin'), ('HTTP_ACCESS_CONtROL_REQUEST_METHOD', 'Access-Control-Request-Method'), ('HTTP_ACCESS_CONTROL_REQUEST_HEADERS', 'Access-Control-Request-Headers')]:
if meta_header in request.META:
things_to_add[dest_header] = request.META[meta_header]
return things_to_add | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier dictionary if_statement identifier block for_statement identifier attribute identifier identifier block if_statement call identifier argument_list attribute identifier identifier identifier block expression_statement assignment subscript identifier binary_operator string string_start string_content string_end identifier call identifier argument_list attribute identifier identifier identifier if_statement identifier block expression_statement assignment subscript identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript identifier string string_start string_content string_end attribute identifier identifier expression_statement assignment subscript identifier string string_start string_content string_end identifier if_statement boolean_operator identifier call identifier argument_list identifier string string_start string_content string_end block if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement assignment subscript identifier string string_start string_content string_end subscript attribute identifier identifier string string_start string_content string_end if_statement boolean_operator comparison_operator string string_start string_content string_end attribute identifier identifier call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment subscript identifier string string_start string_content string_end subscript attribute identifier identifier string string_start string_content string_end for_statement pattern_list identifier identifier list tuple string string_start string_content string_end string string_start string_content string_end tuple string string_start string_content string_end string string_start string_content string_end tuple string string_start string_content string_end string string_start string_content string_end tuple string string_start string_content string_end string string_start string_content string_end block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript identifier identifier subscript attribute identifier identifier identifier return_statement identifier | Build the list of extra headers |
def iter_links(operations, page):
for operation, ns, rule, func in operations:
yield Link.for_(
operation=operation,
ns=ns,
type=ns.subject_name,
qs=page.to_items(),
) | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier identifier identifier identifier block expression_statement yield call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier call attribute identifier identifier argument_list | Generate links for an iterable of operations on a starting page. |
def install_pip(env, requirements):
try:
installation_source_folder = config.installation_cache_folder()
options = setuptools_install_options(installation_source_folder)
if installation_source_folder is not None:
zip_eggs_in_folder(installation_source_folder)
env.execute(["-m", "easy_install"] + options + requirements)
except (KeyboardInterrupt, SystemExit):
raise
except Exception:
raise EnvironmentSetupError("pip installation failed.") | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier none block expression_statement call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list binary_operator binary_operator list string string_start string_content string_end string string_start string_content string_end identifier identifier except_clause tuple identifier identifier block raise_statement except_clause identifier block raise_statement call identifier argument_list string string_start string_content string_end | Install pip and its requirements using setuptools. |
def __read_device(self):
state = XinputState()
res = self.manager.xinput.XInputGetState(
self.__device_number, ctypes.byref(state))
if res == XINPUT_ERROR_SUCCESS:
return state
if res != XINPUT_ERROR_DEVICE_NOT_CONNECTED:
raise RuntimeError(
"Unknown error %d attempting to get state of device %d" % (
res, self.__device_number))
return None | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier identifier block return_statement identifier if_statement comparison_operator identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier attribute identifier identifier return_statement none | Read the state of the gamepad. |
def routeDefault(self, request, year=None):
eventsView = request.GET.get('view', self.default_view)
if eventsView in ("L", "list"):
return self.serveUpcoming(request)
elif eventsView in ("W", "weekly"):
return self.serveWeek(request, year)
else:
return self.serveMonth(request, year) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end attribute identifier identifier if_statement comparison_operator identifier tuple string string_start string_content string_end string string_start string_content string_end block return_statement call attribute identifier identifier argument_list identifier elif_clause comparison_operator identifier tuple string string_start string_content string_end string string_start string_content string_end block return_statement call attribute identifier identifier argument_list identifier identifier else_clause block return_statement call attribute identifier identifier argument_list identifier identifier | Route a request to the default calendar view. |
def add_if_none_match(self):
option = Option()
option.number = defines.OptionRegistry.IF_NONE_MATCH.number
option.value = None
self.add_option(option) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier attribute attribute attribute identifier identifier identifier identifier expression_statement assignment attribute identifier identifier none expression_statement call attribute identifier identifier argument_list identifier | Add the if-none-match option to the request. |
def _get_qsize(tuning, width):
names = [x.to_shorthand() for x in tuning.tuning]
basesize = len(max(names)) + 3
barsize = ((width - basesize) - 2) - 1
return max(0, int(barsize / 4.5)) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list for_in_clause identifier attribute identifier identifier expression_statement assignment identifier binary_operator call identifier argument_list call identifier argument_list identifier integer expression_statement assignment identifier binary_operator parenthesized_expression binary_operator parenthesized_expression binary_operator identifier identifier integer integer return_statement call identifier argument_list integer call identifier argument_list binary_operator identifier float | Return a reasonable quarter note size for 'tuning' and 'width'. |
def instances(exp=".*"):
"Filter list of machines matching an expression"
expression = re.compile(exp)
instances = []
for node in ec2_instances():
if node.tags and ip(node):
try:
if expression.match(node.tags.get("Name")):
instances.append(node)
except TypeError:
pass
return instances | module function_definition identifier parameters default_parameter identifier string string_start string_content string_end block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier list for_statement identifier call identifier argument_list block if_statement boolean_operator attribute identifier identifier call identifier argument_list identifier block try_statement block if_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list identifier except_clause identifier block pass_statement return_statement identifier | Filter list of machines matching an expression |
def _get_parents_from_parts(kwargs):
parent_builder = []
if kwargs['last_child_num'] is not None:
parent_builder.append('{type}/{name}/'.format(**kwargs))
for index in range(1, kwargs['last_child_num']):
child_namespace = kwargs.get('child_namespace_{}'.format(index))
if child_namespace is not None:
parent_builder.append('providers/{}/'.format(child_namespace))
kwargs['child_parent_{}'.format(index)] = ''.join(parent_builder)
parent_builder.append(
'{{child_type_{0}}}/{{child_name_{0}}}/'
.format(index).format(**kwargs))
child_namespace = kwargs.get('child_namespace_{}'.format(kwargs['last_child_num']))
if child_namespace is not None:
parent_builder.append('providers/{}/'.format(child_namespace))
kwargs['child_parent_{}'.format(kwargs['last_child_num'])] = ''.join(parent_builder)
kwargs['resource_parent'] = ''.join(parent_builder) if kwargs['name'] else None
return kwargs | module function_definition identifier parameters identifier block expression_statement assignment identifier list if_statement comparison_operator subscript identifier string string_start string_content string_end none block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list dictionary_splat identifier for_statement identifier call identifier argument_list integer subscript identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier if_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment subscript identifier call attribute string string_start string_content string_end identifier argument_list identifier call attribute string string_start string_end identifier argument_list identifier expression_statement call attribute identifier identifier argument_list call attribute call attribute string string_start string_content string_end identifier argument_list identifier identifier argument_list dictionary_splat identifier expression_statement assignment identifier call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment subscript identifier call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end call attribute string string_start string_end identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_end conditional_expression call attribute string string_start string_end identifier argument_list identifier subscript identifier string string_start string_content string_end none return_statement identifier | Get the parents given all the children parameters. |
def layerize(begin_update=None, predict=None, *args, **kwargs):
if begin_update is not None:
return FunctionLayer(begin_update, predict=predict, *args, **kwargs)
def wrapper(begin_update):
return FunctionLayer(begin_update, *args, **kwargs)
return wrapper | module function_definition identifier parameters default_parameter identifier none default_parameter identifier none list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement comparison_operator identifier none block return_statement call identifier argument_list identifier keyword_argument identifier identifier list_splat identifier dictionary_splat identifier function_definition identifier parameters identifier block return_statement call identifier argument_list identifier list_splat identifier dictionary_splat identifier return_statement identifier | Wrap a function into a layer |
def _nacm_default_deny_stmt(self, stmt: Statement, sctx: SchemaContext) -> None:
if not hasattr(self, 'default_deny'):
return
if stmt.keyword == "default-deny-all":
self.default_deny = DefaultDeny.all
elif stmt.keyword == "default-deny-write":
self.default_deny = DefaultDeny.write | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type none block if_statement not_operator call identifier argument_list identifier string string_start string_content string_end block return_statement if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier attribute identifier identifier elif_clause comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier attribute identifier identifier | Set NACM default access. |
def flow(self)->FlowField:
"Access the flow-field grid after applying queued affine and coord transforms."
if self._affine_mat is not None:
self._flow = _affine_inv_mult(self._flow, self._affine_mat)
self._affine_mat = None
self.transformed = True
if len(self.flow_func) != 0:
for f in self.flow_func[::-1]: self._flow = f(self._flow)
self.transformed = True
self.flow_func = []
return self._flow | module function_definition identifier parameters identifier type identifier block expression_statement string string_start string_content string_end if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier none expression_statement assignment attribute identifier identifier true if_statement comparison_operator call identifier argument_list attribute identifier identifier integer block for_statement identifier subscript attribute identifier identifier slice unary_operator integer block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier true expression_statement assignment attribute identifier identifier list return_statement attribute identifier identifier | Access the flow-field grid after applying queued affine and coord transforms. |
def ReplaceHomoglyphs(s):
homoglyphs = {
'\xa0': ' ',
'\u00e3': '',
'\u00a0': ' ',
'\u00a9': '(C)',
'\u00ae': '(R)',
'\u2014': '-',
'\u2018': "'",
'\u2019': "'",
'\u201c': '"',
'\u201d': '"',
'\u2026': '...',
'\u2e3a': '-',
}
def _ReplaceOne(c):
equiv = homoglyphs.get(c)
if equiv is not None:
return equiv
try:
c.encode('ascii')
return c
except UnicodeError:
pass
try:
return c.encode('unicode-escape').decode('ascii')
except UnicodeError:
return '?'
return ''.join([_ReplaceOne(c) for c in s]) | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end pair string string_start string_content escape_sequence string_end string string_start string_content string_end function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier none block return_statement identifier try_statement block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement identifier except_clause identifier block pass_statement try_statement block return_statement call attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier argument_list string string_start string_content string_end except_clause identifier block return_statement string string_start string_content string_end return_statement call attribute string string_start string_end identifier argument_list list_comprehension call identifier argument_list identifier for_in_clause identifier identifier | Returns s with unicode homoglyphs replaced by ascii equivalents. |
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