code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def process_response(self, request, response):
if COOKIE_KEY not in request.COOKIES:
response.set_cookie(COOKIE_KEY, COOKIE_PASS, httponly=True,
expires=datetime.now()+timedelta(days=30))
if DJANGOSPAM_LOG:
logger.log("PASS RESPONSE", request.method, request.path_info,
request.META.get("HTTP_USER_AGENT", "undefined"))
return response | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier identifier keyword_argument identifier true keyword_argument identifier binary_operator call attribute identifier identifier argument_list call identifier argument_list keyword_argument identifier integer if_statement identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier attribute identifier identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end return_statement identifier | Sets "Ok" cookie on unknown users. |
def _handle_response(self, response):
status = response.status_code
if status == 400:
msg = u"bad request"
raise exceptions.BadRequest(status, msg)
elif status == 401:
msg = u"authorization failed user:%s" % (self.sk_user)
raise exceptions.Unauthorized(status, msg)
elif status == 404:
raise exceptions.NotFound()
elif status == 422:
msg = u"bad request"
raise exceptions.BadRequest(status, msg)
elif status in range(400, 500):
msg = u"unexpected bad request"
raise exceptions.BadRequest(status, msg)
elif status in range(500, 600):
raise exceptions.ServerError()
return response | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier integer block expression_statement assignment identifier string string_start string_content string_end raise_statement call attribute identifier identifier argument_list identifier identifier elif_clause comparison_operator identifier integer block expression_statement assignment identifier binary_operator string string_start string_content string_end parenthesized_expression attribute identifier identifier raise_statement call attribute identifier identifier argument_list identifier identifier elif_clause comparison_operator identifier integer block raise_statement call attribute identifier identifier argument_list elif_clause comparison_operator identifier integer block expression_statement assignment identifier string string_start string_content string_end raise_statement call attribute identifier identifier argument_list identifier identifier elif_clause comparison_operator identifier call identifier argument_list integer integer block expression_statement assignment identifier string string_start string_content string_end raise_statement call attribute identifier identifier argument_list identifier identifier elif_clause comparison_operator identifier call identifier argument_list integer integer block raise_statement call attribute identifier identifier argument_list return_statement identifier | internal method to throw the correct exception if something went wrong |
def _get_parallel_regions(data):
callable_regions = tz.get_in(["config", "algorithm", "callable_regions"], data)
if not callable_regions:
raise ValueError("Did not find any callable regions for sample: %s\n"
"Check 'align/%s/*-callableblocks.bed' and 'regions' to examine callable regions"
% (dd.get_sample_name(data), dd.get_sample_name(data)))
with open(callable_regions) as in_handle:
regions = [(xs[0], int(xs[1]), int(xs[2])) for xs in
(l.rstrip().split("\t") for l in in_handle) if (len(xs) >= 3 and
not xs[0].startswith(("track", "browser",)))]
return regions | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end identifier if_statement not_operator identifier block raise_statement call identifier argument_list binary_operator concatenated_string string string_start string_content escape_sequence string_end string string_start string_content string_end tuple call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block expression_statement assignment identifier list_comprehension tuple subscript identifier integer call identifier argument_list subscript identifier integer call identifier argument_list subscript identifier integer for_in_clause identifier generator_expression call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content escape_sequence string_end for_in_clause identifier identifier if_clause parenthesized_expression boolean_operator comparison_operator call identifier argument_list identifier integer not_operator call attribute subscript identifier integer identifier argument_list tuple string string_start string_content string_end string string_start string_content string_end return_statement identifier | Retrieve regions to run in parallel, putting longest intervals first. |
def _column_reduction(self):
i1, j = np.unique(np.argmin(self.c, axis=0), return_index=True)
self._x[i1] = j
if len(i1) == self.n:
return False
self._y[j] = i1
self._v = np.min(self.c, axis=0)
tempc = self.c.copy()
tempc[i1, j] = np.inf
mu = np.min(tempc[i1, :] - self._v[None, :], axis=1)
self._v[j] -= mu
return True | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier integer keyword_argument identifier true expression_statement assignment subscript attribute identifier identifier identifier identifier if_statement comparison_operator call identifier argument_list identifier attribute identifier identifier block return_statement false expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier integer expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment subscript identifier identifier identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator subscript identifier identifier slice subscript attribute identifier identifier none slice keyword_argument identifier integer expression_statement augmented_assignment subscript attribute identifier identifier identifier identifier return_statement true | Column reduction and reduction transfer steps from LAPJV algorithm |
def create_bottleneck_file(bottleneck_path, image_lists, label_name, index,
image_dir, category, sess, jpeg_data_tensor,
decoded_image_tensor, resized_input_tensor,
bottleneck_tensor):
tf.logging.debug('Creating bottleneck at ' + bottleneck_path)
image_path = get_image_path(image_lists, label_name, index,
image_dir, category)
if not tf.gfile.Exists(image_path):
tf.logging.fatal('File does not exist %s', image_path)
image_data = tf.gfile.GFile(image_path, 'rb').read()
try:
bottleneck_values = run_bottleneck_on_image(
sess, image_data, jpeg_data_tensor, decoded_image_tensor,
resized_input_tensor, bottleneck_tensor)
except Exception as e:
raise RuntimeError('Error during processing file %s (%s)' % (image_path,
str(e)))
bottleneck_string = ','.join(str(x) for x in bottleneck_values)
with open(bottleneck_path, 'w') as bottleneck_file:
bottleneck_file.write(bottleneck_string) | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier identifier identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list binary_operator string string_start string_content string_end identifier expression_statement assignment identifier call identifier argument_list identifier identifier identifier identifier identifier if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end identifier argument_list try_statement block expression_statement assignment identifier call identifier argument_list identifier identifier identifier identifier identifier identifier except_clause as_pattern identifier as_pattern_target identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier call identifier argument_list identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier generator_expression call identifier argument_list identifier for_in_clause identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier | Create a single bottleneck file. |
def mnist(training):
if training:
data_filename = 'train-images-idx3-ubyte.gz'
labels_filename = 'train-labels-idx1-ubyte.gz'
count = 60000
else:
data_filename = 't10k-images-idx3-ubyte.gz'
labels_filename = 't10k-labels-idx1-ubyte.gz'
count = 10000
data_filename = maybe_download(MNIST_URL, data_filename)
labels_filename = maybe_download(MNIST_URL, labels_filename)
return (mnist_extract_data(data_filename, count),
mnist_extract_labels(labels_filename, count)) | module function_definition identifier parameters identifier block if_statement identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier integer else_clause block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier integer expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier call identifier argument_list identifier identifier return_statement tuple call identifier argument_list identifier identifier call identifier argument_list identifier identifier | Downloads MNIST and loads it into numpy arrays. |
def destroy(self, request, pk=None):
org = self.get_object()
org.archived = True
org.save()
return Response(status=status.HTTP_204_NO_CONTENT) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier true expression_statement call attribute identifier identifier argument_list return_statement call identifier argument_list keyword_argument identifier attribute identifier identifier | For DELETE actions, archive the organization, don't delete. |
def open_file(self, fname, length=None, offset=None, swap=None, block=None, peek=None):
if length is None:
length = self.length
if offset is None:
offset = self.offset
if swap is None:
swap = self.swap_size
return binwalk.core.common.BlockFile(fname,
subclass=self.subclass,
length=length,
offset=offset,
swap=swap,
block=block,
peek=peek) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Opens the specified file with all pertinent configuration settings. |
def load (filename, simConfig=None, output=False, instantiate=True, createNEURONObj=True):
from .. import sim
sim.initialize()
sim.cfg.createNEURONObj = createNEURONObj
sim.loadAll(filename, instantiate=instantiate, createNEURONObj=createNEURONObj)
if simConfig: sim.setSimCfg(simConfig)
if len(sim.net.cells) == 0 and instantiate:
pops = sim.net.createPops()
cells = sim.net.createCells()
conns = sim.net.connectCells()
stims = sim.net.addStims()
rxd = sim.net.addRxD()
simData = sim.setupRecording()
if output:
try:
return (pops, cells, conns, stims, rxd, simData)
except:
pass | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier false default_parameter identifier true default_parameter identifier true block import_from_statement relative_import import_prefix dotted_name identifier expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute attribute identifier identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier if_statement boolean_operator comparison_operator call identifier argument_list attribute attribute identifier identifier identifier integer identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list if_statement identifier block try_statement block return_statement tuple identifier identifier identifier identifier identifier identifier except_clause block pass_statement | Sequence of commands load, simulate and analyse network |
def alloc_vpcid(nexus_ips):
LOG.debug("alloc_vpc() called")
vpc_id = 0
intersect = _get_free_vpcids_on_switches(nexus_ips)
for intersect_tuple in intersect:
try:
update_vpc_entry(nexus_ips, intersect_tuple.vpc_id,
False, True)
vpc_id = intersect_tuple.vpc_id
break
except Exception:
LOG.exception(
"This exception is expected if another controller "
"beat us to vpcid %(vpcid)s for nexus %(ip)s",
{'vpcid': intersect_tuple.vpc_id,
'ip': ', '.join(map(str, nexus_ips))})
return vpc_id | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier integer expression_statement assignment identifier call identifier argument_list identifier for_statement identifier identifier block try_statement block expression_statement call identifier argument_list identifier attribute identifier identifier false true expression_statement assignment identifier attribute identifier identifier break_statement except_clause identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list call identifier argument_list identifier identifier return_statement identifier | Allocate a vpc id for the given list of switch_ips. |
def send(self, commands):
"Ship commands to the daemon."
if not commands.endswith("\n"):
commands += "\n"
self.sock.send(commands) | module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end if_statement not_operator call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end block expression_statement augmented_assignment identifier string string_start string_content escape_sequence string_end expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Ship commands to the daemon. |
def unquote_string(code):
scode = code.strip()
assert scode[-1] in ["'", '"']
assert scode[0] in ["'", '"'] or scode[1] in ["'", '"']
return ast.literal_eval(scode) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list assert_statement comparison_operator subscript identifier unary_operator integer list string string_start string_content string_end string string_start string_content string_end assert_statement boolean_operator comparison_operator subscript identifier integer list string string_start string_content string_end string string_start string_content string_end comparison_operator subscript identifier integer list string string_start string_content string_end string string_start string_content string_end return_statement call attribute identifier identifier argument_list identifier | Returns a string from code that contains a repr of the string |
def _update(self):
initial_time = time.time()
self._updateHiddenStateTrajectories()
self._updateEmissionProbabilities()
self._updateTransitionMatrix()
final_time = time.time()
elapsed_time = final_time - initial_time
logger().info("BHMM update iteration took %.3f s" % elapsed_time) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator identifier identifier expression_statement call attribute call identifier argument_list identifier argument_list binary_operator string string_start string_content string_end identifier | Update the current model using one round of Gibbs sampling. |
def column(self, key):
for row in self.rows:
if key in row:
yield row[key] | module function_definition identifier parameters identifier identifier block for_statement identifier attribute identifier identifier block if_statement comparison_operator identifier identifier block expression_statement yield subscript identifier identifier | Iterator over a given column, skipping steps that don't have that key |
def getKnownLadders(reset=False):
if not ladderCache or reset:
jsonFiles = os.path.join(c.LADDER_FOLDER, "*.json")
for ladderFilepath in glob.glob(jsonFiles):
filename = os.path.basename(ladderFilepath)
name = re.search("^ladder_(.*?).json$", filename).groups()[0]
ladder = Ladder(name)
ladderCache[ladder.name] = ladder
return ladderCache | module function_definition identifier parameters default_parameter identifier false block if_statement boolean_operator not_operator identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier string string_start string_content string_end for_statement identifier call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier subscript call attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier argument_list integer expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment subscript identifier attribute identifier identifier identifier return_statement identifier | identify all of the currently defined ladders |
def _iris_obj_to_attrs(obj):
attrs = {'standard_name': obj.standard_name,
'long_name': obj.long_name}
if obj.units.calendar:
attrs['calendar'] = obj.units.calendar
if obj.units.origin != '1' and not obj.units.is_unknown():
attrs['units'] = obj.units.origin
attrs.update(obj.attributes)
return dict((k, v) for k, v in attrs.items() if v is not None) | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier if_statement attribute attribute identifier identifier identifier block expression_statement assignment subscript identifier string string_start string_content string_end attribute attribute identifier identifier identifier if_statement boolean_operator comparison_operator attribute attribute identifier identifier identifier string string_start string_content string_end not_operator call attribute attribute identifier identifier identifier argument_list block expression_statement assignment subscript identifier string string_start string_content string_end attribute attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier return_statement call identifier generator_expression tuple identifier identifier for_in_clause pattern_list identifier identifier call attribute identifier identifier argument_list if_clause comparison_operator identifier none | Return a dictionary of attrs when given a Iris object |
def build_base_image_cmd(self, force):
check_permissions()
basetag = self.conf.basetag
basedir = self.conf.basedir
verbose = self.conf.verbose
if self.image_exists(tag=basetag):
if not force:
echo("Image with tag '{0}' already exists".format(basetag))
return self.image_by_tag(basetag)
else:
self.remove_image(basetag)
echo("Building base image")
stream = self.build(path=basedir, rm=True, tag=basetag)
err = self.__handle_build_stream(stream, verbose)
if err:
echo("Building base image failed with following error:")
echo(err)
return None
image = self.image_by_tag(basetag)
echo("Built base image {0} (Id: {1})".format(basetag, image['Id']))
return image | module function_definition identifier parameters identifier identifier block expression_statement call identifier argument_list expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier attribute attribute identifier identifier identifier if_statement call attribute identifier identifier argument_list keyword_argument identifier identifier block if_statement not_operator identifier block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier true keyword_argument identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier if_statement identifier block expression_statement call identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list identifier return_statement none expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier subscript identifier string string_start string_content string_end return_statement identifier | Build the glusterbase image |
def post_process_images(self, doctree):
super(AbstractSlideBuilder, self).post_process_images(doctree)
relative_base = (
['..'] *
doctree.attributes.get('source')[len(self.srcdir) + 1:].count('/')
)
for node in doctree.traverse(nodes.image):
if node.get('candidates') is None:
node['candidates'] = ('*',)
if node['uri'].startswith(self.outdir):
node['uri'] = '/'.join(
relative_base + [
node['uri'][len(self.outdir) + 1:]
]
) | module function_definition identifier parameters identifier identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list identifier expression_statement assignment identifier parenthesized_expression binary_operator list string string_start string_content string_end call attribute subscript call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end slice binary_operator call identifier argument_list attribute identifier identifier integer identifier argument_list string string_start string_content string_end for_statement identifier call attribute identifier identifier argument_list attribute identifier identifier block if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end none block expression_statement assignment subscript identifier string string_start string_content string_end tuple string string_start string_content string_end if_statement call attribute subscript identifier string string_start string_content string_end identifier argument_list attribute identifier identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list binary_operator identifier list subscript subscript identifier string string_start string_content string_end slice binary_operator call identifier argument_list attribute identifier identifier integer | Pick the best candidate for all image URIs. |
def create_transaction(self, *args: Any, **kwargs: Any) -> BaseTransaction:
return self.get_transaction_class()(*args, **kwargs) | module function_definition identifier parameters identifier typed_parameter list_splat_pattern identifier type identifier typed_parameter dictionary_splat_pattern identifier type identifier type identifier block return_statement call call attribute identifier identifier argument_list argument_list list_splat identifier dictionary_splat identifier | Proxy for instantiating a signed transaction for this VM. |
def _find_unused_partition() -> RootPartitions:
which = subprocess.check_output(['ot-unused-partition']).strip()
return {b'2': RootPartitions.TWO,
b'3': RootPartitions.THREE}[which] | module function_definition identifier parameters type identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list list string string_start string_content string_end identifier argument_list return_statement subscript dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier identifier | Find the currently-unused root partition to write to |
def _build_model_factories(store):
result = {}
for schemaname in store:
schema = None
try:
schema = store[schemaname]['schema']
except KeyError:
schemata_log("No schema found for ", schemaname, lvl=critical, exc=True)
try:
result[schemaname] = warmongo.model_factory(schema)
except Exception as e:
schemata_log("Could not create factory for schema ", schemaname, schema, lvl=critical, exc=True)
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier none try_statement block expression_statement assignment identifier subscript subscript identifier identifier string string_start string_content string_end except_clause identifier block expression_statement call identifier argument_list string string_start string_content string_end identifier keyword_argument identifier identifier keyword_argument identifier true try_statement block expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call identifier argument_list string string_start string_content string_end identifier identifier keyword_argument identifier identifier keyword_argument identifier true return_statement identifier | Generate factories to construct objects from schemata |
def collect(self):
instances = {}
for device in os.listdir('/dev/'):
instances.update(self.match_device(device, '/dev/'))
for device_id in os.listdir('/dev/disk/by-id/'):
instances.update(self.match_device(device, '/dev/disk/by-id/'))
metrics = {}
for device, p in instances.items():
output = p.communicate()[0].strip()
try:
metrics[device + ".Temperature"] = float(output)
except:
self.log.warn('Disk temperature retrieval failed on ' + device)
for metric in metrics.keys():
self.publish(metric, metrics[metric]) | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier string string_start string_content string_end for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier dictionary for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute subscript call attribute identifier identifier argument_list integer identifier argument_list try_statement block expression_statement assignment subscript identifier binary_operator identifier string string_start string_content string_end call identifier argument_list identifier except_clause block expression_statement call attribute attribute identifier identifier identifier argument_list binary_operator string string_start string_content string_end identifier for_statement identifier call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list identifier subscript identifier identifier | Collect and publish disk temperatures |
def remote_resolve_reference(self, ref, remote='origin'):
return git_remote_resolve_reference(self.repo_dir, ref, remote=remote) | module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block return_statement call identifier argument_list attribute identifier identifier identifier keyword_argument identifier identifier | Resolve a reference to a remote revision. |
def cas2tas(Vcas, H):
p, rho, T = atmos(H)
qdyn = p0*((1.+rho0*Vcas*Vcas/(7.*p0))**3.5-1.)
Vtas = np.sqrt(7.*p/rho*((1.+qdyn/p)**(2./7.)-1.))
return Vtas | module function_definition identifier parameters identifier identifier block expression_statement assignment pattern_list identifier identifier identifier call identifier argument_list identifier expression_statement assignment identifier binary_operator identifier parenthesized_expression binary_operator binary_operator parenthesized_expression binary_operator float binary_operator binary_operator binary_operator identifier identifier identifier parenthesized_expression binary_operator float identifier float float expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator binary_operator binary_operator float identifier identifier parenthesized_expression binary_operator binary_operator parenthesized_expression binary_operator float binary_operator identifier identifier parenthesized_expression binary_operator float float float return_statement identifier | Calibrated Airspeed to True Airspeed |
def fill_attrs(self, attrs):
for trname, attrname in self.transitions_at.items():
implem = self.implementations[trname]
if attrname in attrs:
conflicting = attrs[attrname]
if not self._may_override(implem, conflicting):
raise ValueError(
"Can't override transition implementation %s=%r with %r" %
(attrname, conflicting, implem))
attrs[attrname] = implem
return attrs | module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier subscript attribute identifier identifier identifier if_statement comparison_operator identifier identifier block expression_statement assignment identifier subscript identifier identifier if_statement not_operator call attribute identifier identifier argument_list identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier identifier expression_statement assignment subscript identifier identifier identifier return_statement identifier | Update the 'attrs' dict with generated ImplementationProperty. |
def summarize_crud_mutation(method, model, isAsync=False):
action_type = get_crud_action(method=method, model=model)
name = crud_mutation_name(model=model, action=method)
input_map = {
'create': create_mutation_inputs,
'update': update_mutation_inputs,
'delete': delete_mutation_inputs,
}
output_map = {
'create': create_mutation_outputs,
'update': update_mutation_outputs,
'delete': delete_mutation_outputs,
}
inputs = input_map[method](model)
outputs = output_map[method](model)
return summarize_mutation(
mutation_name=name,
event=action_type,
isAsync=isAsync,
inputs=inputs,
outputs=outputs
) | module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier expression_statement assignment identifier call subscript identifier identifier argument_list identifier expression_statement assignment identifier call subscript identifier identifier argument_list identifier return_statement call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | This function provides the standard form for crud mutations. |
def _get_platform_name(ncattr):
match = re.match(r'G-(\d+)', ncattr)
if match:
return SPACECRAFTS.get(int(match.groups()[0]))
return None | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier if_statement identifier block return_statement call attribute identifier identifier argument_list call identifier argument_list subscript call attribute identifier identifier argument_list integer return_statement none | Determine name of the platform |
def addRnaQuantification(self):
self._openRepo()
dataset = self._repo.getDatasetByName(self._args.datasetName)
biosampleId = ""
if self._args.biosampleName:
biosample = dataset.getBiosampleByName(self._args.biosampleName)
biosampleId = biosample.getId()
if self._args.name is None:
name = getNameFromPath(self._args.quantificationFilePath)
else:
name = self._args.name
programs = ""
featureType = "gene"
if self._args.transcript:
featureType = "transcript"
rnaseq2ga.rnaseq2ga(
self._args.quantificationFilePath, self._args.filePath, name,
self._args.format, dataset=dataset, featureType=featureType,
description=self._args.description, programs=programs,
featureSetNames=self._args.featureSetNames,
readGroupSetNames=self._args.readGroupSetName,
biosampleId=biosampleId) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier string string_start string_end if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator attribute attribute identifier identifier identifier none block expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier else_clause block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier string string_start string_end expression_statement assignment identifier string string_start string_content string_end if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier identifier attribute attribute identifier identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier identifier | Adds an rnaQuantification into this repo |
def _from_dict(cls, _dict):
args = {}
if 'count' in _dict:
args['count'] = _dict.get('count')
if 'relevance' in _dict:
args['relevance'] = _dict.get('relevance')
if 'text' in _dict:
args['text'] = _dict.get('text')
if 'emotion' in _dict:
args['emotion'] = EmotionScores._from_dict(_dict.get('emotion'))
if 'sentiment' in _dict:
args['sentiment'] = FeatureSentimentResults._from_dict(
_dict.get('sentiment'))
return cls(**args) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end return_statement call identifier argument_list dictionary_splat identifier | Initialize a KeywordsResult object from a json dictionary. |
def print_datetime_object(dt):
print(dt)
print('ctime :', dt.ctime())
print('tuple :', dt.timetuple())
print('ordinal:', dt.toordinal())
print('Year :', dt.year)
print('Mon :', dt.month)
print('Day :', dt.day) | module function_definition identifier parameters identifier block expression_statement call identifier argument_list identifier expression_statement call identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list expression_statement call identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list expression_statement call identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list expression_statement call identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement call identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement call identifier argument_list string string_start string_content string_end attribute identifier identifier | prints a date-object |
def A(*a):
return np.array(a[0]) if len(a)==1 else [np.array(o) for o in a] | module function_definition identifier parameters list_splat_pattern identifier block return_statement conditional_expression call attribute identifier identifier argument_list subscript identifier integer comparison_operator call identifier argument_list identifier integer list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier identifier | convert iterable object into numpy array |
def float_input(self, question, message='Invalid entry', default=None, required=True):
float_result = None
requiredFlag = True
while (float_result is None and requiredFlag):
result = input('%s: ' % question)
if not result and not required:
float_result = None
requiredFlag = False
if not result and default:
float_result = default
if float_result is None and requiredFlag:
try:
float_result = float(result)
except ValueError:
self.stdout.write(self.style.ERROR(message))
float_result = None
return float_result | module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier none default_parameter identifier true block expression_statement assignment identifier none expression_statement assignment identifier true while_statement parenthesized_expression boolean_operator comparison_operator identifier none identifier block expression_statement assignment identifier call identifier argument_list binary_operator string string_start string_content string_end identifier if_statement boolean_operator not_operator identifier not_operator identifier block expression_statement assignment identifier none expression_statement assignment identifier false if_statement boolean_operator not_operator identifier identifier block expression_statement assignment identifier identifier if_statement boolean_operator comparison_operator identifier none identifier block try_statement block expression_statement assignment identifier call identifier argument_list identifier except_clause identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier none return_statement identifier | Method for floating point inputs with optionally specifiable error message. |
def AvgPool3D(a, k, strides, padding):
patches = _pool_patches(a, k, strides, padding.decode("ascii"))
return np.average(patches, axis=tuple(range(-len(k), 0))), | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end return_statement expression_list call attribute identifier identifier argument_list identifier keyword_argument identifier call identifier argument_list call identifier argument_list unary_operator call identifier argument_list identifier integer | Average 3D pooling op. |
def start_simple_server():
"A simple mail server that sends a simple response"
args = _get_args()
addr = ('', args.port)
DebuggingServer(addr, None)
asyncore.loop() | module function_definition identifier parameters block expression_statement string string_start string_content string_end expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier tuple string string_start string_end attribute identifier identifier expression_statement call identifier argument_list identifier none expression_statement call attribute identifier identifier argument_list | A simple mail server that sends a simple response |
def instance(self, skip_exist_test=False):
model = self.database._models[self.related_to]
meth = model.lazy_connect if skip_exist_test else model
return meth(self.proxy_get()) | module function_definition identifier parameters identifier default_parameter identifier false block expression_statement assignment identifier subscript attribute attribute identifier identifier identifier attribute identifier identifier expression_statement assignment identifier conditional_expression attribute identifier identifier identifier identifier return_statement call identifier argument_list call attribute identifier identifier argument_list | Returns the instance of the related object linked by the field. |
def MemoryExceeded(self):
rss_size = self.proc.memory_info().rss
return rss_size // 1024 // 1024 > config.CONFIG["Client.rss_max"] | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute call attribute attribute identifier identifier identifier argument_list identifier return_statement comparison_operator binary_operator binary_operator identifier integer integer subscript attribute identifier identifier string string_start string_content string_end | Returns True if our memory footprint is too large. |
def instrs_to_body(instrs, context):
stack = []
body = []
process_instrs(instrs, stack, body, context)
if stack:
raise DecompilationError(
"Non-empty stack at the end of instrs_to_body(): %s." % stack
)
return body | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list expression_statement call identifier argument_list identifier identifier identifier identifier if_statement identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier return_statement identifier | Convert a list of Instruction objects to a list of AST body nodes. |
def main(flags):
dl = SheetDownloader(flags)
dl.init()
for file_info in settings.GOOGLE_SHEET_SYNC['files']:
print('Downloading {}'.format(file_info['path']))
dl.download_sheet(
file_info['path'],
file_info['sheet'],
file_info['range'],
) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list for_statement identifier subscript attribute identifier identifier string string_start string_content string_end block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list subscript identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end | Download all sheets as configured. |
def load_template_help(builtin):
help_file = "templates/%s-help.yml" % builtin
help_file = resource_filename(__name__, help_file)
help_obj = {}
if os.path.exists(help_file):
help_data = yaml.safe_load(open(help_file))
if 'name' in help_data:
help_obj['name'] = help_data['name']
if 'help' in help_data:
help_obj['help'] = help_data['help']
if 'args' in help_data:
help_obj['args'] = help_data['args']
return help_obj | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end identifier expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier dictionary if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call identifier argument_list identifier if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end return_statement identifier | Loads the help for a given template |
def copy(self):
return LabeledTree(
udepth = self.udepth,
depth = self.depth,
text = self.text,
label = self.label,
children = self.children.copy() if self.children != None else [],
parent = self.parent) | module function_definition identifier parameters identifier block return_statement call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier conditional_expression call attribute attribute identifier identifier identifier argument_list comparison_operator attribute identifier identifier none list keyword_argument identifier attribute identifier identifier | Deep Copy of a LabeledTree |
def load(self, filename=None):
assert not self.__flag_loaded, "File can be loaded only once"
if filename is None:
filename = self.default_filename
assert filename is not None, \
"{0!s} class has no default filename".format(self.__class__.__name__)
size = os.path.getsize(filename)
if size == 0:
raise RuntimeError("Empty file: '{0!s}'".format(filename))
self._test_magic(filename)
self._do_load(filename)
self.filename = filename
self.__flag_loaded = True | module function_definition identifier parameters identifier default_parameter identifier none block assert_statement not_operator attribute identifier identifier string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier assert_statement comparison_operator identifier none call attribute string string_start string_content string_end identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier if_statement comparison_operator identifier integer block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier true | Loads file and registers filename as attribute. |
def _make_client(self):
self._logger.debug('setting initial watchman timeout to %s', self._startup_timeout)
return StreamableWatchmanClient(sockpath=self.socket,
transport='local',
timeout=self._startup_timeout) | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end attribute identifier identifier return_statement call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier attribute identifier identifier | Create a new watchman client using the BSER protocol over a UNIX socket. |
def update(self, storagemodel:object, modeldefinition = None, hide = 0) -> StorageQueueModel:
if (storagemodel.id != '') and (storagemodel.pop_receipt != '') and (not storagemodel.id is None) and (not storagemodel.pop_receipt is None):
try:
content = storagemodel.getmessage()
message = modeldefinition['queueservice'].update_message(storagemodel._queuename, storagemodel.id, storagemodel.pop_receipt, visibility_timeout = hide, content=content)
storagemodel.content = content
storagemodel.pop_receipt = message.pop_receipt
except Exception as e:
msg = 'can not update queue message: queue {} with message.id {!s} because {!s}'.format(storagemodel._queuename, storagemodel.id, e)
storagemodel = None
raise AzureStorageWrapException(msg=msg)
else:
msg = 'cant update queuemessage in {!s} due to missing id {!s} and/or pop_receipt {!s}'.format(storagemodel._queuename, storagemodel.id, storagemodel.pop_receipt)
storagemodel = None
raise AzureStorageWrapException(msg=msg)
return storagemodel | module function_definition identifier parameters identifier typed_parameter identifier type identifier default_parameter identifier none default_parameter identifier integer type identifier block if_statement boolean_operator boolean_operator boolean_operator parenthesized_expression comparison_operator attribute identifier identifier string string_start string_end parenthesized_expression comparison_operator attribute identifier identifier string string_start string_end parenthesized_expression not_operator comparison_operator attribute identifier identifier none parenthesized_expression not_operator comparison_operator attribute identifier identifier none block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier identifier expression_statement assignment identifier none raise_statement call identifier argument_list keyword_argument identifier identifier else_clause block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment identifier none raise_statement call identifier argument_list keyword_argument identifier identifier return_statement identifier | update the message in queue |
def remove_sample_prep_workflow(portal):
logger.info("Removing 'sample_prep' related states and transitions ...")
workflow_ids = ["bika_sample_workflow",
"bika_ar_workflow",
"bika_analysis_workflow"]
to_remove = ["sample_prep", "sample_prep_complete"]
wf_tool = api.get_tool("portal_workflow")
for wf_id in workflow_ids:
workflow = wf_tool.getWorkflowById(wf_id)
for state_trans in to_remove:
if state_trans in workflow.transitions:
logger.info("Removing transition '{}' from '{}'"
.format(state_trans, wf_id))
workflow.transitions.deleteTransitions([state_trans])
if state_trans in workflow.states:
logger.info("Removing state '{}' from '{}'"
.format(state_trans, wf_id))
workflow.states.deleteStates([state_trans]) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list list identifier if_statement comparison_operator identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list list identifier | Removes sample_prep and sample_prep_complete transitions |
def write_output(self):
for data in self.output_data.values():
self.create_output(data.get('key'), data.get('value'), data.get('type')) | module function_definition identifier parameters identifier block for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end | Write all stored output data to storage. |
def fetch_closed_orders(self, limit: int) -> List[Order]:
return self._fetch_orders_limit(self._closed_orders, limit) | module function_definition identifier parameters identifier typed_parameter identifier type identifier type generic_type identifier type_parameter type identifier block return_statement call attribute identifier identifier argument_list attribute identifier identifier identifier | Fetch latest closed orders, must provide a limit. |
def should_log(self, logger_name: str, level: str) -> bool:
if (logger_name, level) not in self._should_log:
log_level_per_rule = self._get_log_level(logger_name)
log_level_per_rule_numeric = getattr(logging, log_level_per_rule.upper(), 10)
log_level_event_numeric = getattr(logging, level.upper(), 10)
should_log = log_level_event_numeric >= log_level_per_rule_numeric
self._should_log[(logger_name, level)] = should_log
return self._should_log[(logger_name, level)] | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type identifier block if_statement comparison_operator tuple identifier identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier call attribute identifier identifier argument_list integer expression_statement assignment identifier call identifier argument_list identifier call attribute identifier identifier argument_list integer expression_statement assignment identifier comparison_operator identifier identifier expression_statement assignment subscript attribute identifier identifier tuple identifier identifier identifier return_statement subscript attribute identifier identifier tuple identifier identifier | Returns if a message for the logger should be logged. |
def assign(self, subject):
if not isinstance(subject, (Publisher, Subscriber)):
raise TypeError('Assignee has to be Publisher or Subscriber')
if self._subject is not None:
raise SubscriptionError('Topic %r already assigned' % self._path)
self._subject = subject
if self._subscriptions:
self._subject.subscribe(self)
if self._pre_assign_emit is not None:
for value in self._pre_assign_emit:
self._subject.emit(value, who=self)
self._pre_assign_emit = None
return subject | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier tuple identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end if_statement comparison_operator attribute identifier identifier none block raise_statement call identifier argument_list binary_operator string string_start string_content string_end attribute identifier identifier expression_statement assignment attribute identifier identifier identifier if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement comparison_operator attribute identifier identifier none block for_statement identifier attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier keyword_argument identifier identifier expression_statement assignment attribute identifier identifier none return_statement identifier | Assigns the given subject to the topic |
def _get_requested_databases(self):
requested_databases = []
if ((self._requested_namespaces is not None) and
(self._requested_namespaces != [])):
for requested_namespace in self._requested_namespaces:
if requested_namespace[0] is '*':
return []
elif requested_namespace[0] not in IGNORE_DBS:
requested_databases.append(requested_namespace[0])
return requested_databases | module function_definition identifier parameters identifier block expression_statement assignment identifier list if_statement parenthesized_expression boolean_operator parenthesized_expression comparison_operator attribute identifier identifier none parenthesized_expression comparison_operator attribute identifier identifier list block for_statement identifier attribute identifier identifier block if_statement comparison_operator subscript identifier integer string string_start string_content string_end block return_statement list elif_clause comparison_operator subscript identifier integer identifier block expression_statement call attribute identifier identifier argument_list subscript identifier integer return_statement identifier | Returns a list of databases requested, not including ignored dbs |
def method(func):
attr = abc.abstractmethod(func)
attr.__imethod__ = True
return attr | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier true return_statement identifier | Wrap a function as a method. |
def make_random_xml_file(fname, num_elements=200, depth=3):
with open(fname, 'w') as f:
f.write('<?xml version="1.0" ?>\n<random>\n')
for dep_num, _ in enumerate(range(1,depth)):
f.write(' <depth>\n <content>\n')
for num, _ in enumerate(range(1, num_elements)):
f.write(' <stuff>data line ' + str(num) + '</stuff>\n')
f.write(' </content>\n </depth>\n')
f.write('</random>\n') | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier integer block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence escape_sequence string_end for_statement pattern_list identifier identifier call identifier argument_list call identifier argument_list integer identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence escape_sequence string_end for_statement pattern_list identifier identifier call identifier argument_list call identifier argument_list integer identifier block expression_statement call attribute identifier identifier argument_list binary_operator binary_operator string string_start string_content string_end call identifier argument_list identifier string string_start string_content escape_sequence string_end expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence escape_sequence string_end expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end | makes a random xml file mainly for testing the xml_split |
def del_aldb(self, mem_addr: int):
self._aldb.del_record(mem_addr)
self._aldb.add_loaded_callback(self._aldb_loaded_callback) | module function_definition identifier parameters identifier typed_parameter identifier type identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier | Delete an All-Link Database record. |
def on_status(self, status):
self.out.write(json.dumps(status))
self.out.write(os.linesep)
self.received += 1
return not self.terminate | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement augmented_assignment attribute identifier identifier integer return_statement not_operator attribute identifier identifier | Print out some tweets |
def top(self):
for child in self.children(skip_not_present=False):
if not isinstance(child, AddrmapNode):
continue
return child
raise RuntimeError | module function_definition identifier parameters identifier block for_statement identifier call attribute identifier identifier argument_list keyword_argument identifier false block if_statement not_operator call identifier argument_list identifier identifier block continue_statement return_statement identifier raise_statement identifier | Returns the top-level addrmap node |
def enable(ctx):
if ctx.obj['username'] is None:
log('Specify the username with "iso db user --username ..."')
return
change_user = ctx.obj['db'].objectmodels['user'].find_one({
'name': ctx.obj['username']
})
change_user.active = True
change_user.save()
log('Done') | module function_definition identifier parameters identifier block if_statement comparison_operator subscript attribute identifier identifier string string_start string_content string_end none block expression_statement call identifier argument_list string string_start string_content string_end return_statement expression_statement assignment identifier call attribute subscript attribute subscript attribute identifier identifier string string_start string_content string_end identifier string string_start string_content string_end identifier argument_list dictionary pair string string_start string_content string_end subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier true expression_statement call attribute identifier identifier argument_list expression_statement call identifier argument_list string string_start string_content string_end | Enable an existing user |
def parseCustom(self,
xbrl,
ignore_errors=0):
custom_obj = Custom()
custom_data = xbrl.find_all(re.compile('^((?!(us-gaap|dei|xbrll|xbrldi)).)*:\s*',
re.IGNORECASE | re.MULTILINE))
elements = {}
for data in custom_data:
if XBRLParser().is_number(data.text):
setattr(custom_obj, data.name.split(':')[1], data.text)
return custom_obj | module function_definition identifier parameters identifier identifier default_parameter identifier integer block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end binary_operator attribute identifier identifier attribute identifier identifier expression_statement assignment identifier dictionary for_statement identifier identifier block if_statement call attribute call identifier argument_list identifier argument_list attribute identifier identifier block expression_statement call identifier argument_list identifier subscript call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end integer attribute identifier identifier return_statement identifier | Parse company custom entities from XBRL and return an Custom object. |
def queue_context_entry(exchange,
queue_name,
routing=None):
if routing is None:
routing = queue_name
queue_entry = QueueContextEntry(mq_queue=queue_name,
mq_exchange=exchange,
mq_routing_key=routing)
return queue_entry | module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier return_statement identifier | forms queue's context entry |
def format_address(address):
if address.kind == ArgumentKind.regular:
return address.name
return "{0}[{1}]".format(address.name, address.key) | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier attribute identifier identifier block return_statement attribute identifier identifier return_statement call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier | Formats an ArgumentAddress for human reading. |
def _process(self, name):
if self.token.nature == name:
self.token = self.lexer.next_token()
else:
self._error() | module function_definition identifier parameters identifier identifier block if_statement comparison_operator attribute attribute identifier identifier identifier identifier block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list else_clause block expression_statement call attribute identifier identifier argument_list | Process the current token. |
def structparser(token):
m = STRUCT_PACK_RE.match(token)
if not m:
return [token]
else:
endian = m.group('endian')
if endian is None:
return [token]
formatlist = re.findall(STRUCT_SPLIT_RE, m.group('fmt'))
fmt = ''.join([f[-1] * int(f[:-1]) if len(f) != 1 else
f for f in formatlist])
if endian == '@':
if byteorder == 'little':
endian = '<'
else:
assert byteorder == 'big'
endian = '>'
if endian == '<':
tokens = [REPLACEMENTS_LE[c] for c in fmt]
else:
assert endian == '>'
tokens = [REPLACEMENTS_BE[c] for c in fmt]
return tokens | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block return_statement list identifier else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator identifier none block return_statement list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute string string_start string_end identifier argument_list list_comprehension conditional_expression binary_operator subscript identifier unary_operator integer call identifier argument_list subscript identifier slice unary_operator integer comparison_operator call identifier argument_list identifier integer identifier for_in_clause identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end else_clause block assert_statement comparison_operator identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_content string_end if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier list_comprehension subscript identifier identifier for_in_clause identifier identifier else_clause block assert_statement comparison_operator identifier string string_start string_content string_end expression_statement assignment identifier list_comprehension subscript identifier identifier for_in_clause identifier identifier return_statement identifier | Parse struct-like format string token into sub-token list. |
def _handle_api(self, handler, handler_args, handler_kwargs):
try:
status_code, return_value = handler(*handler_args, **handler_kwargs)
except APIError as error:
return error.send()
web.ctx.status = _convert_http_status(status_code)
return _api_convert_output(return_value) | module function_definition identifier parameters identifier identifier identifier identifier block try_statement block expression_statement assignment pattern_list identifier identifier call identifier argument_list list_splat identifier dictionary_splat identifier except_clause as_pattern identifier as_pattern_target identifier block return_statement call attribute identifier identifier argument_list expression_statement assignment attribute attribute identifier identifier identifier call identifier argument_list identifier return_statement call identifier argument_list identifier | Handle call to subclasses and convert the output to an appropriate value |
def parse_substitution_from_list(list_rep):
if type(list_rep) is not list:
raise SyntaxError('Substitution must be a list')
if len(list_rep) < 2:
raise SyntaxError('Substitution must be a list of size 2')
pattern = list_rep[0]
replacement = list_rep[1]
is_multiline = False
if (len(list_rep) > 2):
is_multiline = list_rep[2]
if type(is_multiline) is not bool:
raise SyntaxError('is_multiline must be a boolean')
result = substitute.Substitution(pattern, replacement, is_multiline)
return result | module function_definition identifier parameters identifier block if_statement comparison_operator call identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end if_statement comparison_operator call identifier argument_list identifier integer block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier false if_statement parenthesized_expression comparison_operator call identifier argument_list identifier integer block expression_statement assignment identifier subscript identifier integer if_statement comparison_operator call identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier return_statement identifier | Parse a substitution from the list representation in the config file. |
def _find_function(name,
region=None, key=None, keyid=None, profile=None):
conn = _get_conn(region=region, key=key, keyid=keyid, profile=profile)
for funcs in __utils__['boto3.paged_call'](conn.list_functions):
for func in funcs['Functions']:
if func['FunctionName'] == name:
return func
return None | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier for_statement identifier call subscript identifier string string_start string_content string_end argument_list attribute identifier identifier block for_statement identifier subscript identifier string string_start string_content string_end block if_statement comparison_operator subscript identifier string string_start string_content string_end identifier block return_statement identifier return_statement none | Given function name, find and return matching Lambda information. |
def getData(self, events):
if self.interval not in ["1d", "1wk", "1mo"]:
raise ValueError("Incorrect interval: valid intervals are 1d, 1wk, 1mo")
url = self.api_url % (self.ticker, self.start, self.end, self.interval, events, self.crumb)
data = requests.get(url, cookies={'B':self.cookie})
content = StringIO(data.content.decode("utf-8"))
return pd.read_csv(content, sep=',') | module function_definition identifier parameters identifier identifier block if_statement comparison_operator attribute identifier identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier binary_operator attribute identifier identifier tuple attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier dictionary pair string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content string_end | Returns a list of historical data from Yahoo Finance |
def _directory (self):
if self._filename is None:
return os.path.join(self._ROOT_DIR, 'config')
else:
return os.path.dirname(self._filename) | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block return_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier string string_start string_content string_end else_clause block return_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier | The directory for this AitConfig. |
def allocate(self):
self.logger.debug("Allocating environment.")
self._allocate()
self.logger.debug("Environment successfully allocated.") | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end | Builds the context and the Hooks. |
def _setup_packages(self, sc):
packages = self.py_packages
if not packages:
return
for package in packages:
mod = importlib.import_module(package)
try:
mod_path = mod.__path__[0]
except AttributeError:
mod_path = mod.__file__
tar_path = os.path.join(self.run_path, package + '.tar.gz')
tar = tarfile.open(tar_path, "w:gz")
tar.add(mod_path, os.path.basename(mod_path))
tar.close()
sc.addPyFile(tar_path) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement not_operator identifier block return_statement for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier try_statement block expression_statement assignment identifier subscript attribute identifier identifier integer except_clause identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier | This method compresses and uploads packages to the cluster |
def _force_close(self):
if self._sock:
try:
self._sock.close()
except:
pass
self._sock = None
self._rfile = None | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list except_clause block pass_statement expression_statement assignment attribute identifier identifier none expression_statement assignment attribute identifier identifier none | Close connection without QUIT message |
def shell_out_ignore_exitcode(cmd, stderr=STDOUT, cwd=None):
try:
return shell_out(cmd, stderr=stderr, cwd=cwd)
except CalledProcessError as c:
return _clean_output(c.output) | module function_definition identifier parameters identifier default_parameter identifier identifier default_parameter identifier none block try_statement block return_statement call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier except_clause as_pattern identifier as_pattern_target identifier block return_statement call identifier argument_list attribute identifier identifier | Same as shell_out but doesn't raise if the cmd exits badly. |
def folder_name(self):
name = self.site_packages_name
if name is None:
name = self.name
return name | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier return_statement identifier | The name of the build folders containing this recipe. |
def gen_smul(src1, src2, dst):
assert src1.size == src2.size
return ReilBuilder.build(ReilMnemonic.SMUL, src1, src2, dst) | module function_definition identifier parameters identifier identifier identifier block assert_statement comparison_operator attribute identifier identifier attribute identifier identifier return_statement call attribute identifier identifier argument_list attribute identifier identifier identifier identifier identifier | Return a SMUL instruction. |
def string(self, *args):
data = self.bytes(*args)
if data is not None:
return data.rstrip(b"\x00").decode('utf-8') | module function_definition identifier parameters identifier list_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list list_splat identifier if_statement comparison_operator identifier none block return_statement call attribute call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end identifier argument_list string string_start string_content string_end | return string stored in node |
def update_image(self, data):
if 1 in data.shape:
data = data.squeeze()
if self.conf.contrast_level is not None:
clevels = [self.conf.contrast_level, 100.0-self.conf.contrast_level]
imin, imax = np.percentile(data, clevels)
data = np.clip((data - imin)/(imax - imin + 1.e-8), 0, 1)
self.axes.images[0].set_data(data)
self.canvas.draw() | module function_definition identifier parameters identifier identifier block if_statement comparison_operator integer attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator attribute attribute identifier identifier identifier none block expression_statement assignment identifier list attribute attribute identifier identifier identifier binary_operator float attribute attribute identifier identifier identifier expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator parenthesized_expression binary_operator identifier identifier parenthesized_expression binary_operator binary_operator identifier identifier float integer integer expression_statement call attribute subscript attribute attribute identifier identifier identifier integer identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list | update image on panel, as quickly as possible |
def fragment(pkt, fragsize=1480):
fragsize = (fragsize + 7) // 8 * 8
lst = []
for p in pkt:
s = bytes(p[IP].payload)
nb = (len(s) + fragsize - 1) // fragsize
for i in range(nb):
q = p.copy()
del q[IP].payload
del q[IP].chksum
del q[IP].len
if i == nb - 1:
q[IP].flags &= ~1
else:
q[IP].flags |= 1
q[IP].frag = i * fragsize // 8
r = conf.raw_layer(load=s[i * fragsize:(i + 1) * fragsize])
r.overload_fields = p[IP].payload.overload_fields.copy()
q.add_payload(r)
lst.append(q)
return lst | module function_definition identifier parameters identifier default_parameter identifier integer block expression_statement assignment identifier binary_operator binary_operator parenthesized_expression binary_operator identifier integer integer integer expression_statement assignment identifier list for_statement identifier identifier block expression_statement assignment identifier call identifier argument_list attribute subscript identifier identifier identifier expression_statement assignment identifier binary_operator parenthesized_expression binary_operator binary_operator call identifier argument_list identifier identifier integer identifier for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list delete_statement attribute subscript identifier identifier identifier delete_statement attribute subscript identifier identifier identifier delete_statement attribute subscript identifier identifier identifier if_statement comparison_operator identifier binary_operator identifier integer block expression_statement augmented_assignment attribute subscript identifier identifier identifier unary_operator integer else_clause block expression_statement augmented_assignment attribute subscript identifier identifier identifier integer expression_statement assignment attribute subscript identifier identifier identifier binary_operator binary_operator identifier identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier subscript identifier slice binary_operator identifier identifier binary_operator parenthesized_expression binary_operator identifier integer identifier expression_statement assignment attribute identifier identifier call attribute attribute attribute subscript identifier identifier identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Fragment a big IP datagram |
def update(self, new_data: IntentDict):
for locale, data in new_data.items():
if locale not in self.dict:
self.dict[locale] = {}
self.dict[locale].update(data) | module function_definition identifier parameters identifier typed_parameter identifier type identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier dictionary expression_statement call attribute subscript attribute identifier identifier identifier identifier argument_list identifier | Receive an update from the loaders. |
def ifar(self, coinc_stat):
n = self.coincs.num_greater(coinc_stat)
return self.background_time / lal.YRJUL_SI / (n + 1) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement binary_operator binary_operator attribute identifier identifier attribute identifier identifier parenthesized_expression binary_operator identifier integer | Return the far that would be associated with the coincident given. |
def unmarshal(self, value, bind_client=None):
if not isinstance(value, self.type):
o = self.type()
if bind_client is not None and hasattr(o.__class__, 'bind_client'):
o.bind_client = bind_client
if isinstance(value, dict):
for (k, v) in value.items():
if not hasattr(o.__class__, k):
self.log.warning("Unable to set attribute {0} on entity {1!r}".format(k, o))
else:
setattr(o, k, v)
value = o
else:
raise Exception("Unable to unmarshall object {0!r}".format(value))
return value | module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator identifier none call identifier argument_list attribute identifier identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier identifier if_statement call identifier argument_list identifier identifier block for_statement tuple_pattern identifier identifier call attribute identifier identifier argument_list block if_statement not_operator call identifier argument_list attribute identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier else_clause block expression_statement call identifier argument_list identifier identifier identifier expression_statement assignment identifier identifier else_clause block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier return_statement identifier | Cast the specified value to the entity type. |
async def handle_client_get_queue(self, client_addr, _: ClientGetQueue):
jobs_running = list()
for backend_job_id, content in self._job_running.items():
jobs_running.append((content[1].job_id, backend_job_id[0] == client_addr, self._registered_agents[content[0]],
content[1].course_id+"/"+content[1].task_id,
content[1].launcher, int(content[2]), int(content[2])+content[1].time_limit))
jobs_waiting = list()
for job_client_addr, msg in self._waiting_jobs.items():
if isinstance(msg, ClientNewJob):
jobs_waiting.append((msg.job_id, job_client_addr[0] == client_addr, msg.course_id+"/"+msg.task_id, msg.launcher,
msg.time_limit))
await ZMQUtils.send_with_addr(self._client_socket, client_addr, BackendGetQueue(jobs_running, jobs_waiting)) | module function_definition identifier parameters identifier identifier typed_parameter identifier type identifier block expression_statement assignment identifier call identifier argument_list for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list tuple attribute subscript identifier integer identifier comparison_operator subscript identifier integer identifier subscript attribute identifier identifier subscript identifier integer binary_operator binary_operator attribute subscript identifier integer identifier string string_start string_content string_end attribute subscript identifier integer identifier attribute subscript identifier integer identifier call identifier argument_list subscript identifier integer binary_operator call identifier argument_list subscript identifier integer attribute subscript identifier integer identifier expression_statement assignment identifier call identifier argument_list for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list tuple attribute identifier identifier comparison_operator subscript identifier integer identifier binary_operator binary_operator attribute identifier identifier string string_start string_content string_end attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement await call attribute identifier identifier argument_list attribute identifier identifier identifier call identifier argument_list identifier identifier | Handles a ClientGetQueue message. Send back info about the job queue |
def recv(self, filename, dest_file, timeout=None):
transport = DataFilesyncTransport(self.stream)
transport.write_data('RECV', filename, timeout)
for data_msg in transport.read_until_done('DATA', timeout):
dest_file.write(data_msg.data) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none block expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier | Retrieve a file from the device into the file-like dest_file. |
def prettify_xml(xml_root):
xml_string = etree.tostring(xml_root, encoding="utf-8", xml_declaration=True, pretty_print=True)
return get_unicode_str(xml_string) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier true keyword_argument identifier true return_statement call identifier argument_list identifier | Returns pretty-printed string representation of element tree. |
def download(args):
downloader = Downloader(server_index_url = args.server_index_url)
if args.packages:
for pkg_id in args.packages:
rv = downloader.download(info_or_id=unicode(pkg_id), download_dir=args.dir,
quiet=args.quiet, force=args.force,
halt_on_error=args.halt_on_error)
if rv == False and args.halt_on_error:
break
else:
downloader.download(download_dir=args.dir, quiet=args.quiet, force=args.force,
halt_on_error=args.halt_on_error) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier if_statement attribute identifier identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier call identifier argument_list identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier if_statement boolean_operator comparison_operator identifier false attribute identifier identifier block break_statement else_clause block expression_statement call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier | Download polyglot packages and models. |
def defaultBuilder(value, nt):
if callable(value):
def logbuilder(V):
try:
value(V)
except:
_log.exception("Error in Builder")
raise
return logbuilder
def builder(V):
try:
if isinstance(value, Value):
V[None] = value
elif isinstance(value, dict):
for k, v in value.items():
V[k] = v
else:
nt.assign(V, value)
except:
_log.exception("Exception in Put builder")
raise
return builder | module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier block function_definition identifier parameters identifier block try_statement block expression_statement call identifier argument_list identifier except_clause block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end raise_statement return_statement identifier function_definition identifier parameters identifier block try_statement block if_statement call identifier argument_list identifier identifier block expression_statement assignment subscript identifier none identifier elif_clause call identifier argument_list identifier identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment subscript identifier identifier identifier else_clause block expression_statement call attribute identifier identifier argument_list identifier identifier except_clause block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end raise_statement return_statement identifier | Reasonably sensible default handling of put builder |
def block_ip(ip_address):
if not ip_address:
return
if config.DISABLE_IP_LOCKOUT:
return
key = get_ip_blocked_cache_key(ip_address)
if config.COOLOFF_TIME:
REDIS_SERVER.set(key, 'blocked', config.COOLOFF_TIME)
else:
REDIS_SERVER.set(key, 'blocked')
send_ip_block_signal(ip_address) | module function_definition identifier parameters identifier block if_statement not_operator identifier block return_statement if_statement attribute identifier identifier block return_statement expression_statement assignment identifier call identifier argument_list identifier if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end attribute identifier identifier else_clause block expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement call identifier argument_list identifier | given the ip, block it |
def finish(self, status, response):
self.response = binascii.hexlify(response).decode('utf-8')
self.status = status
self.runtime = monotonic() - self._start_time | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment attribute identifier identifier call attribute call attribute identifier identifier argument_list identifier identifier argument_list string string_start string_content string_end expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier binary_operator call identifier argument_list attribute identifier identifier | Mark the end of a recorded RPC. |
def center_image(self, img):
img.anchor_x = img.width // 2
img.anchor_y = img.height // 2 | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier integer expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier integer | Sets an image's anchor point to its center |
def promptyn(msg, default=None):
while True:
yes = "Y" if default else "y"
if default or default is None:
no = "n"
else:
no = "N"
confirm = prompt("%s [%s/%s]" % (msg, yes, no), "").lower()
if confirm in ("y", "yes"):
return True
elif confirm in ("n", "no"):
return False
elif not confirm and default is not None:
return default | module function_definition identifier parameters identifier default_parameter identifier none block while_statement true block expression_statement assignment identifier conditional_expression string string_start string_content string_end identifier string string_start string_content string_end if_statement boolean_operator identifier comparison_operator identifier none block expression_statement assignment identifier string string_start string_content string_end else_clause block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute call identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier identifier string string_start string_end identifier argument_list if_statement comparison_operator identifier tuple string string_start string_content string_end string string_start string_content string_end block return_statement true elif_clause comparison_operator identifier tuple string string_start string_content string_end string string_start string_content string_end block return_statement false elif_clause boolean_operator not_operator identifier comparison_operator identifier none block return_statement identifier | Display a blocking prompt until the user confirms |
def check_denovo_input(inputfile, params):
background = params["background"]
input_type = determine_file_type(inputfile)
if input_type == "fasta":
valid_bg = FA_VALID_BGS
elif input_type in ["bed", "narrowpeak"]:
genome = params["genome"]
valid_bg = BED_VALID_BGS
if "genomic" in background or "gc" in background:
Genome(genome)
check_bed_file(inputfile)
else:
sys.stderr.write("Format of inputfile {} not recognized.\n".format(inputfile))
sys.stderr.write("Input should be FASTA, BED or narrowPeak.\n")
sys.stderr.write("See https://genome.ucsc.edu/FAQ/FAQformat.html for specifications.\n")
sys.exit(1)
for bg in background:
if not bg in valid_bg:
logger.info("Input type is %s, ignoring background type '%s'",
input_type, bg)
background = [bg for bg in background if bg in valid_bg]
if len(background) == 0:
logger.error("No valid backgrounds specified!")
sys.exit(1)
return input_type, background | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier identifier elif_clause comparison_operator identifier list string string_start string_content string_end string string_start string_content string_end block expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier identifier if_statement boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier block expression_statement call identifier argument_list identifier expression_statement call identifier argument_list identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement call attribute identifier identifier argument_list integer for_statement identifier identifier block if_statement not_operator comparison_operator identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier expression_statement assignment identifier list_comprehension identifier for_in_clause identifier identifier if_clause comparison_operator identifier identifier if_statement comparison_operator call identifier argument_list identifier integer block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list integer return_statement expression_list identifier identifier | Check if an input file is valid, which means BED, narrowPeak or FASTA |
def _gen_full_path(self, filename, file_system=None):
if file_system is None:
return '{}/{}'.format(self.dest_file_system, filename)
else:
if ":" not in file_system:
raise ValueError("Invalid file_system specified: {}".format(file_system))
return '{}/{}'.format(file_system, filename) | module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement comparison_operator identifier none block return_statement call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier identifier else_clause block if_statement comparison_operator string string_start string_content string_end identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier return_statement call attribute string string_start string_content string_end identifier argument_list identifier identifier | Generate full file path on remote device. |
def strip_accents(string):
return u''.join(
(character for character in unicodedata.normalize('NFD', string)
if unicodedata.category(character) != 'Mn')) | module function_definition identifier parameters identifier block return_statement call attribute string string_start string_end identifier argument_list generator_expression identifier for_in_clause identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier if_clause comparison_operator call attribute identifier identifier argument_list identifier string string_start string_content string_end | Strip all the accents from the string |
def vectorize_dialogues(self, dialogues):
return np.array([self.vectorize_dialogue(d) for d in dialogues]) | module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier identifier | Take in a list of dialogues and vectorize them all |
def _handle_poll(self, relpath, params):
request = json.loads(params.get('q')[0])
ret = {}
for poll in request:
_id = poll.get('id', None)
path = poll.get('path', None)
pos = poll.get('pos', 0)
if path:
abspath = os.path.normpath(os.path.join(self._root, path))
if os.path.isfile(abspath):
with open(abspath, 'rb') as infile:
if pos:
infile.seek(pos)
content = infile.read()
ret[_id] = content.decode("utf-8")
content = json.dumps(ret).encode("utf-8")
self._send_content(content, 'application/json') | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list subscript call attribute identifier identifier argument_list string string_start string_content string_end integer expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end integer if_statement identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list attribute identifier identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block if_statement identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end | Handle poll requests for raw file contents. |
def needsattached(func):
@functools.wraps(func)
def wrap(self, *args, **kwargs):
if not self.attached:
raise PositionError('Not attached to any process.')
return func(self, *args, **kwargs)
return wrap | module function_definition identifier parameters identifier block decorated_definition decorator call attribute identifier identifier argument_list identifier function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement not_operator attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end return_statement call identifier argument_list identifier list_splat identifier dictionary_splat identifier return_statement identifier | Decorator to prevent commands from being used when not attached. |
def prompt_with_prob(self, orig_response=None, prob=None):
if self.load_error:
return 'Failed to read guidance config file'
if hasattr(self.assignment, 'is_test'):
log.info("Skipping prompt due to test mode")
return "Test response"
if prob is None:
prob = self.prompt_probability
if random.random() > prob:
log.info("Did not prompt for rationale: Insufficient Probability")
return "Did not prompt for rationale"
with format.block(style="-"):
rationale = prompt.explanation_msg(EXPLANTION_PROMPT,
short_msg=CONFIRM_BLANK_EXPLANATION)
if prob is None:
self.prompt_probability = 0
if orig_response:
print('Thanks! Your original response was: {}'.format('\n'.join(orig_response)))
return rationale | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none block if_statement attribute identifier identifier block return_statement string string_start string_content string_end if_statement call identifier argument_list attribute identifier identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier if_statement comparison_operator call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement string string_start string_content string_end with_statement with_clause with_item call attribute identifier identifier argument_list keyword_argument identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier if_statement comparison_operator identifier none block expression_statement assignment attribute identifier identifier integer if_statement identifier block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier return_statement identifier | Ask for rationale with a specific level of probability. |
def replace_in_file(self, file_path, old_exp, new_exp):
self.term.print_info(u"Making replacement into {}"
.format(self.term.text_in_color(file_path,
TERM_GREEN)))
tmp_file = tempfile.NamedTemporaryFile(mode='w+t', delete=False)
for filelineno, line in enumerate(io.open(file_path, encoding="utf-8")):
if old_exp in line:
line = line.replace(old_exp, new_exp)
try:
tmp_file.write(line.encode('utf-8'))
except TypeError:
tmp_file.write(line)
name = tmp_file.name
tmp_file.close()
shutil.copy(name, file_path)
os.remove(name) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier string string_start string_content string_end keyword_argument identifier false for_statement pattern_list identifier identifier call identifier argument_list call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content string_end block if_statement comparison_operator identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier try_statement block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end except_clause identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list identifier | In the given file, replace all 'old_exp' by 'new_exp'. |
def make_dist(name, version, **kwargs):
summary = kwargs.pop('summary', 'Placeholder for summary')
md = Metadata(**kwargs)
md.name = name
md.version = version
md.summary = summary or 'Placeholder for summary'
return Distribution(md) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call identifier argument_list dictionary_splat identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier boolean_operator identifier string string_start string_content string_end return_statement call identifier argument_list identifier | A convenience method for making a dist given just a name and version. |
def wp_status(self):
try:
print("Have %u of %u waypoints" % (self.wploader.count()+len(self.wp_received), self.wploader.expected_count))
except Exception:
print("Have %u waypoints" % (self.wploader.count()+len(self.wp_received))) | module function_definition identifier parameters identifier block try_statement block expression_statement call identifier argument_list binary_operator string string_start string_content string_end tuple binary_operator call attribute attribute identifier identifier identifier argument_list call identifier argument_list attribute identifier identifier attribute attribute identifier identifier identifier except_clause identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end parenthesized_expression binary_operator call attribute attribute identifier identifier identifier argument_list call identifier argument_list attribute identifier identifier | show status of wp download |
def _handle_getconfig(self,cfg_file,*args,**options):
if args:
raise CommandError("supervisor getconfig takes no arguments")
print cfg_file.read()
return 0 | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement identifier block raise_statement call identifier argument_list string string_start string_content string_end print_statement call attribute identifier identifier argument_list return_statement integer | Command 'supervisor getconfig' prints merged config to stdout. |
def the_one(cls):
if cls.THE_ONE is None:
cls.THE_ONE = cls(settings.HELP_TOKENS_INI_FILE)
return cls.THE_ONE | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier return_statement attribute identifier identifier | Get the single global HelpUrlExpert object. |
def _refresh_aldb_records(self, linkcode, address, group):
if self.aldb.status in [ALDBStatus.LOADED, ALDBStatus.PARTIAL]:
for mem_addr in self.aldb:
rec = self.aldb[mem_addr]
if linkcode in [0, 1, 3]:
if rec.control_flags.is_high_water_mark:
_LOGGER.debug('Removing HWM record %04x', mem_addr)
self.aldb.pop(mem_addr)
elif not rec.control_flags.is_in_use:
_LOGGER.debug('Removing not in use record %04x',
mem_addr)
self.aldb.pop(mem_addr)
else:
if rec.address == self.address and rec.group == group:
_LOGGER.debug('Removing record %04x with addr %s and '
'group %d', mem_addr, rec.address,
rec.group)
self.aldb.pop(mem_addr)
self.read_aldb() | module function_definition identifier parameters identifier identifier identifier identifier block if_statement comparison_operator attribute attribute identifier identifier identifier list attribute identifier identifier attribute identifier identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier identifier if_statement comparison_operator identifier list integer integer integer block if_statement attribute attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier elif_clause not_operator attribute attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier else_clause block if_statement boolean_operator comparison_operator attribute identifier identifier attribute identifier identifier comparison_operator attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end identifier attribute identifier identifier attribute identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list | Refresh the IM and device ALDB records. |
def _get_num_similar_objects(self, obj):
return StatementLine.objects.filter(
date=obj.date, amount=obj.amount, description=obj.description
).count() | module function_definition identifier parameters identifier identifier block return_statement call attribute call attribute attribute identifier identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier identifier argument_list | Get any statement lines which would be considered a duplicate of obj |
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