code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def clean_new_password2(self):
password1 = self.cleaned_data.get('new_password1')
password2 = self.cleaned_data.get('new_password2')
try:
directory = APPLICATION.default_account_store_mapping.account_store
directory.password_policy.strength.validate_password(password2)
except ValueError as e:
raise forms.ValidationError(str(e))
if password1 and password2:
if password1 != password2:
raise forms.ValidationError("The two passwords didn't match.")
return password2 | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end try_statement block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier except_clause as_pattern identifier as_pattern_target identifier block raise_statement call attribute identifier identifier argument_list call identifier argument_list identifier if_statement boolean_operator identifier identifier block if_statement comparison_operator identifier identifier block raise_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement identifier | Check if passwords match and are valid. |
def process_result_value(self, value, dialect):
if value is not None:
with BytesIO(value) as stream:
with GzipFile(fileobj=stream, mode="rb") as file_handle:
value = json.loads(file_handle.read().decode("utf-8"))
return value | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier none block with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block with_statement with_clause with_item as_pattern call identifier argument_list keyword_argument identifier identifier keyword_argument identifier string string_start string_content string_end as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content string_end return_statement identifier | Convert a JSON encoded string to a dictionary structure. |
def update_stale(self):
for etype, echannels in self.event_states.items():
for eprop in echannels:
if eprop[3] is not None:
sec_elap = ((datetime.datetime.now()-eprop[3])
.total_seconds())
if sec_elap > 5 and eprop[0] is True:
_LOGGING.debug('Updating stale event %s on CH(%s)',
etype, eprop[1])
attr = [False, eprop[1], eprop[2],
datetime.datetime.now()]
self.update_attributes(etype, eprop[1], attr)
self.publish_changes(etype, eprop[1]) | module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block for_statement identifier identifier block if_statement comparison_operator subscript identifier integer none block expression_statement assignment identifier parenthesized_expression call attribute parenthesized_expression binary_operator call attribute attribute identifier identifier identifier argument_list subscript identifier integer identifier argument_list if_statement boolean_operator comparison_operator identifier integer comparison_operator subscript identifier integer true block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier subscript identifier integer expression_statement assignment identifier list false subscript identifier integer subscript identifier integer call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier subscript identifier integer identifier expression_statement call attribute identifier identifier argument_list identifier subscript identifier integer | Update stale active statuses |
def on_backward_end(self, **kwargs:Any)->None:
"Convert the gradients back to FP32 and divide them by the scale."
if self.dynamic and grad_overflow(self.model_params) and self.loss_scale > 1:
self.loss_scale /= 2
self.noskip = 0
else:
model_g2master_g(self.model_params, self.master_params, self.flat_master)
for group in self.master_params:
for param in group:
if param.grad is not None: param.grad.div_(self.loss_scale)
if self.clip is not None:
for group in self.master_params: nn.utils.clip_grad_norm_(group, self.clip)
if not self.dynamic: return
self.noskip += 1
if self.noskip >= self.max_noskip and self.loss_scale < self.max_scale:
self.loss_scale *= 2
self.noskip = 0 | module function_definition identifier parameters identifier typed_parameter dictionary_splat_pattern identifier type identifier type none block expression_statement string string_start string_content string_end if_statement boolean_operator boolean_operator attribute identifier identifier call identifier argument_list attribute identifier identifier comparison_operator attribute identifier identifier integer block expression_statement augmented_assignment attribute identifier identifier integer expression_statement assignment attribute identifier identifier integer else_clause block expression_statement call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier for_statement identifier attribute identifier identifier block for_statement identifier identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier if_statement comparison_operator attribute identifier identifier none block for_statement identifier attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier attribute identifier identifier if_statement not_operator attribute identifier identifier block return_statement expression_statement augmented_assignment attribute identifier identifier integer if_statement boolean_operator comparison_operator attribute identifier identifier attribute identifier identifier comparison_operator attribute identifier identifier attribute identifier identifier block expression_statement augmented_assignment attribute identifier identifier integer expression_statement assignment attribute identifier identifier integer | Convert the gradients back to FP32 and divide them by the scale. |
def request(self, method, path, params=None, headers=None, body=None):
if not headers:
headers = {}
if not params:
params = {}
headers["Accept"] = "application/json"
headers["Accept-Version"] = "^1.15.0"
if self.auth_token:
headers["Authorization"] = "Bearer {0}".format(self.auth_token)
path = self.url + path
params = self.flatten_params(params)
response = requests.request(method, path, params=params, headers=headers, json=body)
result = response.text
try:
result = response.json()
except Exception:
pass
if response.status_code >= 400:
raise LosantError(response.status_code, result)
return result | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none block if_statement not_operator identifier block expression_statement assignment identifier dictionary if_statement not_operator identifier block expression_statement assignment identifier dictionary expression_statement assignment subscript identifier string string_start string_content string_end string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end string string_start string_content string_end if_statement attribute identifier identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement assignment identifier binary_operator attribute identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier attribute identifier identifier try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list except_clause identifier block pass_statement if_statement comparison_operator attribute identifier identifier integer block raise_statement call identifier argument_list attribute identifier identifier identifier return_statement identifier | Base method for making a Losant API request |
def _create_credentials(self, n):
if not n:
return n
elif isinstance(n, SecurityCreds):
return n
elif isinstance(n, dict):
return SecurityCreds(**n)
else:
raise TypeError("%s is not a valid security configuration"
% repr(n)) | module function_definition identifier parameters identifier identifier block if_statement not_operator identifier block return_statement identifier elif_clause call identifier argument_list identifier identifier block return_statement identifier elif_clause call identifier argument_list identifier identifier block return_statement call identifier argument_list dictionary_splat identifier else_clause block raise_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | Create security credentials, if necessary. |
def restore_watched(plex, opts):
with open(opts.filepath, 'r') as handle:
source = json.load(handle)
differences = defaultdict(lambda: dict())
for section in _iter_sections(plex, opts):
print('Finding differences in %s..' % section.title)
skey = section.title.lower()
for item in _iter_items(section):
ikey = _item_key(item)
sval = source.get(skey,{}).get(ikey)
if sval is None:
raise SystemExit('%s not found' % ikey)
if (sval is not None and item.isWatched != sval) and (not opts.watchedonly or sval):
differences[skey][ikey] = {'isWatched':sval, 'item':item}
print('Applying %s differences to destination' % len(differences))
import pprint; pprint.pprint(differences) | module function_definition identifier parameters identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list lambda call identifier argument_list for_statement identifier call identifier argument_list identifier identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier dictionary identifier argument_list identifier if_statement comparison_operator identifier none block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier if_statement boolean_operator parenthesized_expression boolean_operator comparison_operator identifier none comparison_operator attribute identifier identifier identifier parenthesized_expression boolean_operator not_operator attribute identifier identifier identifier block expression_statement assignment subscript subscript identifier identifier identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier expression_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier import_statement dotted_name identifier expression_statement call attribute identifier identifier argument_list identifier | Restore watched status from the specified filepath. |
def find_best_periods(self, n_periods=5, return_scores=False):
return self.optimizer.find_best_periods(self, n_periods,
return_scores=return_scores) | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier false block return_statement call attribute attribute identifier identifier identifier argument_list identifier identifier keyword_argument identifier identifier | Find the top several best periods for the model |
def parse_in_line(txt: str, units: Units) -> typing.Dict[str, str]:
retwx = {}
wxdata = txt.split(' ')
wxdata, _, retwx['wind_shear'] = core.sanitize_report_list(wxdata)
wxdata, retwx['type'], retwx['start_time'], retwx['end_time'] = core.get_type_and_times(wxdata)
wxdata, retwx['wind_direction'], retwx['wind_speed'], \
retwx['wind_gust'], _ = core.get_wind(wxdata, units)
if 'CAVOK' in wxdata:
retwx['visibility'] = core.make_number('CAVOK')
retwx['clouds'] = []
wxdata.pop(wxdata.index('CAVOK'))
else:
wxdata, retwx['visibility'] = core.get_visibility(wxdata, units)
wxdata, retwx['clouds'] = core.get_clouds(wxdata)
retwx['other'], retwx['altimeter'], retwx['icing'], retwx['turbulance'] \
= core.get_taf_alt_ice_turb(wxdata)
return retwx | module function_definition identifier parameters typed_parameter identifier type identifier typed_parameter identifier type identifier type subscript attribute identifier identifier identifier identifier block expression_statement assignment identifier dictionary expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment pattern_list identifier identifier subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier expression_statement assignment pattern_list identifier subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier expression_statement assignment pattern_list identifier subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end line_continuation subscript identifier string string_start string_content string_end identifier call attribute identifier identifier argument_list identifier identifier if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end list expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end else_clause block expression_statement assignment pattern_list identifier subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier identifier expression_statement assignment pattern_list identifier subscript identifier string string_start string_content string_end call attribute identifier identifier argument_list identifier expression_statement assignment pattern_list subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end line_continuation call attribute identifier identifier argument_list identifier return_statement identifier | Parser for the International TAF forcast varient |
def _get_masses(fitnesses):
best_fitness = max(fitnesses)
worst_fitness = min(fitnesses)
fitness_range = best_fitness - worst_fitness
raw_masses = []
for fitness in fitnesses:
raw_masses.append((fitness - worst_fitness) / (fitness_range + EPSILON)
+ EPSILON)
total_mass = sum(raw_masses)
masses = []
for mass in raw_masses:
masses.append(mass / total_mass)
return masses | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment identifier list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator binary_operator parenthesized_expression binary_operator identifier identifier parenthesized_expression binary_operator identifier identifier identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator identifier identifier return_statement identifier | Convert fitnesses into masses, as given by GSA algorithm. |
def attach_core_filters(cls):
opts = cls._meta
base_filters = cls.base_filters.copy()
cls.base_filters.clear()
for name, filter_ in six.iteritems(base_filters):
if isinstance(filter_, AutoFilters):
field = filterset.get_model_field(opts.model, filter_.name)
filter_exclusion = filter_.extra.pop('drop', [])
for lookup_expr in utils.lookups_for_field(field):
if lookup_expr not in filter_exclusion:
new_filter = cls.filter_for_field(field, filter_.name, lookup_expr)
if lookup_expr != 'exact':
filter_name = LOOKUP_SEP.join([name, lookup_expr])
else:
filter_name = name
cls.base_filters[filter_name] = new_filter | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list for_statement pattern_list identifier identifier call attribute identifier identifier argument_list identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end list for_statement identifier call attribute identifier identifier argument_list identifier block if_statement comparison_operator identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list list identifier identifier else_clause block expression_statement assignment identifier identifier expression_statement assignment subscript attribute identifier identifier identifier identifier | Attach core filters to filterset |
def _irc_lower(self, in_string):
conv_string = self._translate(in_string)
if self._lower_trans is not None:
conv_string = conv_string.translate(self._lower_trans)
return str.lower(conv_string) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier return_statement call attribute identifier identifier argument_list identifier | Convert us to our lower-case equivalent, given our std. |
def make_keys_safe(dct):
result = {}
for key, val in dct.items():
key = key.replace('-', '_')
if key in keyword.kwlist:
key = key + '_'
result[key] = val
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment subscript identifier identifier identifier return_statement identifier | Modify the keys in |dct| to be valid attribute names. |
def check_section_oversized(self):
total_image_size = self.pefile_handle.OPTIONAL_HEADER.SizeOfImage
for section in self.pefile_handle.sections:
if section.PointerToRawData + section.SizeOfRawData > total_image_size:
return {'description': 'Oversized section, storing addition data within the PE',
'severity': 3, 'category': 'MALFORMED', 'attributes': section.Name}
return None | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute attribute identifier identifier identifier identifier for_statement identifier attribute attribute identifier identifier identifier block if_statement comparison_operator binary_operator attribute identifier identifier attribute identifier identifier identifier block return_statement dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end integer pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end attribute identifier identifier return_statement none | Checking if any of the sections go past the total size of the image |
def list_lbaas_healthmonitors(self, retrieve_all=True, **_params):
return self.list('healthmonitors', self.lbaas_healthmonitors_path,
retrieve_all, **_params) | module function_definition identifier parameters identifier default_parameter identifier true dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier identifier dictionary_splat identifier | Fetches a list of all lbaas_healthmonitors for a project. |
def write(self, message, autoerase=True):
super(Animation, self).write(message)
self.last_message = message
if autoerase:
time.sleep(self.interval)
self.erase(message) | module function_definition identifier parameters identifier identifier default_parameter identifier true block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier identifier if_statement identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier | Send something for stdout and erased after delay |
def format(item, **params):
encoding = params.get('charset', 'UTF-8')
return json.dumps(item, encoding=encoding) | module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier | Truns a python object into a JSON structure. |
def in_subnet(cidr, addrs=None):
for address in addrs:
if ip_in_subnet(address, cidr):
return True
return False | module function_definition identifier parameters identifier default_parameter identifier none block for_statement identifier identifier block if_statement call identifier argument_list identifier identifier block return_statement true return_statement false | Returns True if host is within specified subnet, otherwise False |
def prepare(self):
self.target = self.fn
self.targetheader = reader.get_tsv_header(self.target)
self.decoyheader = reader.get_tsv_header(self.decoyfn) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier | No percolator XML for protein tables |
def encode_inputs(self):
litmap = dict()
nvars = 0
for i, v in enumerate(self.inputs, start=1):
litmap[v] = i
litmap[~v] = -i
litmap[i] = v
litmap[-i] = ~v
nvars += 1
return litmap, nvars | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier integer for_statement pattern_list identifier identifier call identifier argument_list attribute identifier identifier keyword_argument identifier integer block expression_statement assignment subscript identifier identifier identifier expression_statement assignment subscript identifier unary_operator identifier unary_operator identifier expression_statement assignment subscript identifier identifier identifier expression_statement assignment subscript identifier unary_operator identifier unary_operator identifier expression_statement augmented_assignment identifier integer return_statement expression_list identifier identifier | Return a compact encoding for input variables. |
def reset(self):
if not self.leds:
return
self.animate_stop()
for group in self.led_groups:
self.set_color(group, LED_DEFAULT_COLOR) | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement expression_statement call attribute identifier identifier argument_list for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier identifier | Put all LEDs back to their default color |
def _get_seqprop_to_seqprop_alignment(self, seqprop1, seqprop2):
if isinstance(seqprop1, str):
seqprop1_id = seqprop1
else:
seqprop1_id = seqprop1.id
if isinstance(seqprop2, str):
seqprop2_id = seqprop2
else:
seqprop2_id = seqprop2.id
aln_id = '{}_{}'.format(seqprop1_id, seqprop2_id)
if self.sequence_alignments.has_id(aln_id):
alignment = self.sequence_alignments.get_by_id(aln_id)
return alignment
else:
raise ValueError('{}: sequence alignment not found, please run the alignment first'.format(aln_id)) | module function_definition identifier parameters identifier identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier attribute identifier identifier if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement identifier else_clause block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier | Return the alignment stored in self.sequence_alignments given a seqprop + another seqprop |
def search(table: LdapObjectClass, query: Optional[Q] = None,
database: Optional[Database] = None, base_dn: Optional[str] = None) -> Iterator[LdapObject]:
fields = table.get_fields()
db_fields = {
name: field
for name, field in fields.items()
if field.db_field
}
database = get_database(database)
connection = database.connection
search_options = table.get_search_options(database)
iterator = tldap.query.search(
connection=connection,
query=query,
fields=db_fields,
base_dn=base_dn or search_options.base_dn,
object_classes=search_options.object_class,
pk=search_options.pk_field,
)
for dn, data in iterator:
python_data = _db_to_python(data, table, dn)
python_data = table.on_load(python_data, database)
yield python_data | module function_definition identifier parameters typed_parameter identifier type identifier typed_default_parameter identifier type generic_type identifier type_parameter type identifier none typed_default_parameter identifier type generic_type identifier type_parameter type identifier none typed_default_parameter identifier type generic_type identifier type_parameter type identifier none type generic_type identifier type_parameter type identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier dictionary_comprehension pair identifier identifier for_in_clause pattern_list identifier identifier call attribute identifier identifier argument_list if_clause attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier boolean_operator identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier for_statement pattern_list identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier expression_statement yield identifier | Search for a object of given type in the database. |
def addstr(self, h, w, text, attrs=0):
self.update_window_size()
if h > self.height or w > self.width:
return
try:
self.window.addstr(h, w, text, attrs)
except Exception as e:
pass | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier integer block expression_statement call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator identifier attribute identifier identifier comparison_operator identifier attribute identifier identifier block return_statement try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier identifier identifier except_clause as_pattern identifier as_pattern_target identifier block pass_statement | A safe addstr wrapper |
def _rescan(self, skip_to_end = True):
paths = []
for single_glob in self._globspec:
paths.extend(glob.glob(single_glob))
for path in self._tailedfiles.keys():
if path not in paths:
self._tailedfiles[path]._close()
del self._tailedfiles[path]
for path in paths:
try:
if self._tailedfiles[path].hasBeenRotated():
if not self._tailedfiles[path].reopen():
del self._tailedfiles[path]
except KeyError:
self._tailedfiles[path] = TailedFile(path, skip_to_end = skip_to_end, offset = self._offsets.get(path, None)) | module function_definition identifier parameters identifier default_parameter identifier true block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier for_statement identifier call attribute attribute identifier identifier identifier argument_list block if_statement comparison_operator identifier identifier block expression_statement call attribute subscript attribute identifier identifier identifier identifier argument_list delete_statement subscript attribute identifier identifier identifier for_statement identifier identifier block try_statement block if_statement call attribute subscript attribute identifier identifier identifier identifier argument_list block if_statement not_operator call attribute subscript attribute identifier identifier identifier identifier argument_list block delete_statement subscript attribute identifier identifier identifier except_clause identifier block expression_statement assignment subscript attribute identifier identifier identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier call attribute attribute identifier identifier identifier argument_list identifier none | Check for new files, deleted files, and rotated files. |
def _options_dir(name):
_check_portname(name)
_root = '/var/db/ports'
new_dir = os.path.join(_root, name.replace('/', '_'))
old_dir = os.path.join(_root, name.split('/')[-1])
if os.path.isdir(old_dir):
return old_dir
return new_dir | module function_definition identifier parameters identifier block expression_statement call identifier argument_list identifier expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end unary_operator integer if_statement call attribute attribute identifier identifier identifier argument_list identifier block return_statement identifier return_statement identifier | Retrieve the path to the dir containing OPTIONS file for a given port |
def pretty_date(the_datetime):
diff = datetime.utcnow() - the_datetime
if diff.days > 7 or diff.days < 0:
return the_datetime.strftime('%A %B %d, %Y')
elif diff.days == 1:
return '1 day ago'
elif diff.days > 1:
return '{0} days ago'.format(diff.days)
elif diff.seconds <= 1:
return 'just now'
elif diff.seconds < 60:
return '{0} seconds ago'.format(diff.seconds)
elif diff.seconds < 120:
return '1 minute ago'
elif diff.seconds < 3600:
return '{0} minutes ago'.format(int(round(diff.seconds / 60)))
elif diff.seconds < 7200:
return '1 hour ago'
else:
return '{0} hours ago'.format(int(round(diff.seconds / 3600))) | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier if_statement boolean_operator comparison_operator attribute identifier identifier integer comparison_operator attribute identifier identifier integer block return_statement call attribute identifier identifier argument_list string string_start string_content string_end elif_clause comparison_operator attribute identifier identifier integer block return_statement string string_start string_content string_end elif_clause comparison_operator attribute identifier identifier integer block return_statement call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier elif_clause comparison_operator attribute identifier identifier integer block return_statement string string_start string_content string_end elif_clause comparison_operator attribute identifier identifier integer block return_statement call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier elif_clause comparison_operator attribute identifier identifier integer block return_statement string string_start string_content string_end elif_clause comparison_operator attribute identifier identifier integer block return_statement call attribute string string_start string_content string_end identifier argument_list call identifier argument_list call identifier argument_list binary_operator attribute identifier identifier integer elif_clause comparison_operator attribute identifier identifier integer block return_statement string string_start string_content string_end else_clause block return_statement call attribute string string_start string_content string_end identifier argument_list call identifier argument_list call identifier argument_list binary_operator attribute identifier identifier integer | Attempt to return a human-readable time delta string. |
def _with_rotation(self, w, h):
res_w = abs(w * math.cos(self.rotation) + h * math.sin(self.rotation))
res_h = abs(h * math.cos(self.rotation) + w * math.sin(self.rotation))
return res_w, res_h | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list binary_operator binary_operator identifier call attribute identifier identifier argument_list attribute identifier identifier binary_operator identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier call identifier argument_list binary_operator binary_operator identifier call attribute identifier identifier argument_list attribute identifier identifier binary_operator identifier call attribute identifier identifier argument_list attribute identifier identifier return_statement expression_list identifier identifier | calculate the actual dimensions after rotation |
def resourcetypes(rid, model):
types = []
for o, r, t, a in model.match(rid, VTYPE_REL):
types.append(t)
return types | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement pattern_list identifier identifier identifier identifier call attribute identifier identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Return a list of Versa types for a resource |
def benchmark(store, n=10000):
x = UpdatableItem(store=store, count=0)
for _ in xrange(n):
x.count += 1 | module function_definition identifier parameters identifier default_parameter identifier integer block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier integer for_statement identifier call identifier argument_list identifier block expression_statement augmented_assignment attribute identifier identifier integer | Increments an integer count n times. |
def walk_preorder(self):
yield self
for child in self._children():
for descendant in child.walk_preorder():
yield descendant | module function_definition identifier parameters identifier block expression_statement yield identifier for_statement identifier call attribute identifier identifier argument_list block for_statement identifier call attribute identifier identifier argument_list block expression_statement yield identifier | Iterates the program tree starting from this object, going down. |
def lee_yeast_ChIP(data_set='lee_yeast_ChIP'):
if not data_available(data_set):
download_data(data_set)
from pandas import read_csv
dir_path = os.path.join(data_path, data_set)
filename = os.path.join(dir_path, 'binding_by_gene.tsv')
S = read_csv(filename, header=1, index_col=0, sep='\t')
transcription_factors = [col for col in S.columns if col[:7] != 'Unnamed']
annotations = S[['Unnamed: 1', 'Unnamed: 2', 'Unnamed: 3']]
S = S[transcription_factors]
return data_details_return({'annotations' : annotations, 'Y' : S, 'transcription_factors': transcription_factors}, data_set) | module function_definition identifier parameters default_parameter identifier string string_start string_content string_end block if_statement not_operator call identifier argument_list identifier block expression_statement call identifier argument_list identifier import_from_statement dotted_name identifier dotted_name identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier integer keyword_argument identifier integer keyword_argument identifier string string_start string_content escape_sequence string_end expression_statement assignment identifier list_comprehension identifier for_in_clause identifier attribute identifier identifier if_clause comparison_operator subscript identifier slice integer string string_start string_content string_end expression_statement assignment identifier subscript identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier subscript identifier identifier return_statement call identifier argument_list dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier identifier | Yeast ChIP data from Lee et al. |
def rollback(self):
if not self._in_transaction:
raise NotInTransaction
self._init_cache()
self._in_transaction = False | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block raise_statement identifier expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier false | Drop changes from current transaction. |
def _get_redis_keys_opts():
return {
'bank_prefix': __opts__.get('cache.redis.bank_prefix', _BANK_PREFIX),
'bank_keys_prefix': __opts__.get('cache.redis.bank_keys_prefix', _BANK_KEYS_PREFIX),
'key_prefix': __opts__.get('cache.redis.key_prefix', _KEY_PREFIX),
'separator': __opts__.get('cache.redis.separator', _SEPARATOR)
} | module function_definition identifier parameters block return_statement dictionary pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end identifier | Build the key opts based on the user options. |
def takeFromTree(self):
tree = self.treeWidget()
parent = self.parent()
if parent:
parent.takeChild(parent.indexOfChild(self))
else:
tree.takeTopLevelItem(tree.indexOfTopLevelItem(self)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list if_statement identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier else_clause block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier | Takes this item from the tree. |
def close(self):
try:
logger.debug('%s - closing', self._resource_name,
extra=self._logging_extra)
self.before_close()
self.visalib.close(self.session)
logger.debug('%s - is closed', self._resource_name,
extra=self._logging_extra)
self.session = None
except errors.InvalidSession:
pass | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement assignment attribute identifier identifier none except_clause attribute identifier identifier block pass_statement | Closes the VISA session and marks the handle as invalid. |
def frame_msg(body, header=None, raw_body=False):
framed_msg = {}
if header is None:
header = {}
framed_msg['head'] = header
framed_msg['body'] = body
return salt.utils.msgpack.dumps(framed_msg) | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier false block expression_statement assignment identifier dictionary if_statement comparison_operator identifier none block expression_statement assignment identifier dictionary expression_statement assignment subscript identifier string string_start string_content string_end identifier expression_statement assignment subscript identifier string string_start string_content string_end identifier return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier | Frame the given message with our wire protocol |
def _validate(self):
for c, m in self.atom_to_seqres_sequence_maps.iteritems():
if self.seqres_to_uniparc_sequence_maps.keys():
atom_uniparc_keys = set(self.atom_to_uniparc_sequence_maps.get(c, {}).keys())
atom_seqres_keys = set(self.atom_to_seqres_sequence_maps.get(c, {}).keys())
assert(atom_uniparc_keys.intersection(atom_seqres_keys) == atom_uniparc_keys)
for k, v in m.map.iteritems():
uparc_id_1, uparc_id_2 = None, None
try:
uparc_id_1 = self.seqres_to_uniparc_sequence_maps[c].map[v]
uparc_id_2 = self.atom_to_uniparc_sequence_maps[c].map[k]
except:
continue
assert(uparc_id_1 == uparc_id_2) | module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list call attribute call attribute attribute identifier identifier identifier argument_list identifier dictionary identifier argument_list expression_statement assignment identifier call identifier argument_list call attribute call attribute attribute identifier identifier identifier argument_list identifier dictionary identifier argument_list assert_statement parenthesized_expression comparison_operator call attribute identifier identifier argument_list identifier identifier for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment pattern_list identifier identifier expression_list none none try_statement block expression_statement assignment identifier subscript attribute subscript attribute identifier identifier identifier identifier identifier expression_statement assignment identifier subscript attribute subscript attribute identifier identifier identifier identifier identifier except_clause block continue_statement assert_statement parenthesized_expression comparison_operator identifier identifier | Tests that the maps agree through composition. |
def create_unsigned_transaction(cls,
*,
nonce: int,
gas_price: int,
gas: int,
to: Address,
value: int,
data: bytes) -> 'BaseUnsignedTransaction':
return cls.get_transaction_class().create_unsigned_transaction(
nonce=nonce,
gas_price=gas_price,
gas=gas,
to=to,
value=value,
data=data
) | module function_definition identifier parameters identifier keyword_separator typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type string string_start string_content string_end block return_statement call attribute call attribute identifier identifier argument_list identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Proxy for instantiating an unsigned transaction for this VM. |
def add_song(self, new_song, verbose=True):
if any([song.title == new_song.title for song in self._songs]):
if verbose:
print('{s} already in {a}, not adding song.'.format(s=new_song.title,
a=self.name))
return 1
if new_song.artist == self.name:
self._songs.append(new_song)
self._num_songs += 1
return 0
if verbose:
print("Can't add song by {b}, artist must be {a}.".format(b=new_song.artist,
a=self.name))
return 1 | module function_definition identifier parameters identifier identifier default_parameter identifier true block if_statement call identifier argument_list list_comprehension comparison_operator attribute identifier identifier attribute identifier identifier for_in_clause identifier attribute identifier identifier block if_statement identifier block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier return_statement integer if_statement comparison_operator attribute identifier identifier attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement augmented_assignment attribute identifier identifier integer return_statement integer if_statement identifier block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier return_statement integer | Add a Song object to the Artist object |
def lists(self):
with open(self.filelist, 'w') as filelist:
with open(self.reportlist, 'w') as reportlist:
for sample in self.runmetadata.samples:
if self.extension == 'fastq':
try:
status = sample.run.Description
if status == 'metagenome':
filelist.write(sample.general.combined + '\n')
reportlist.write(sample.general.combined.split('.')[0] + '\n')
except AttributeError:
pass
else:
if sample.general.combined != 'NA':
filelist.write(sample.general.combined + '\n')
reportlist.write(sample.general.combined.split('.')[0] + '\n') | module function_definition identifier parameters identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block for_statement identifier attribute attribute identifier identifier identifier block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block try_statement block expression_statement assignment identifier attribute attribute identifier identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list binary_operator attribute attribute identifier identifier identifier string string_start string_content escape_sequence string_end expression_statement call attribute identifier identifier argument_list binary_operator subscript call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end integer string string_start string_content escape_sequence string_end except_clause identifier block pass_statement else_clause block if_statement comparison_operator attribute attribute identifier identifier identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list binary_operator attribute attribute identifier identifier identifier string string_start string_content escape_sequence string_end expression_statement call attribute identifier identifier argument_list binary_operator subscript call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end integer string string_start string_content escape_sequence string_end | Prepare the list of files to be processed |
async def move_camera_spatial(self, position: Union[Point2, Point3]):
from s2clientprotocol import spatial_pb2 as spatial_pb
assert isinstance(position, (Point2, Point3))
action = sc_pb.Action(
action_render=spatial_pb.ActionSpatial(
camera_move=spatial_pb.ActionSpatialCameraMove(
center_minimap=common_pb.PointI(x=position.x, y=position.y)
)
)
)
await self._execute(action=sc_pb.RequestAction(actions=[action])) | module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier type identifier block import_from_statement dotted_name identifier aliased_import dotted_name identifier identifier assert_statement call identifier argument_list identifier tuple identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement await call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier list identifier | Moves camera to the target position using the spatial aciton interface |
def from_file(fn, **options):
if hasattr(fn, 'read'):
return TableFu(fn, **options)
with open(fn) as f:
return TableFu(f, **options) | module function_definition identifier parameters identifier dictionary_splat_pattern identifier block if_statement call identifier argument_list identifier string string_start string_content string_end block return_statement call identifier argument_list identifier dictionary_splat identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block return_statement call identifier argument_list identifier dictionary_splat identifier | Creates a new TableFu instance from a file or path |
def render_to_png(self, filename=None, dpi=72, **kwargs):
import cairosvg
return cairosvg.svg2png(
bytestring=self.render(**kwargs), write_to=filename, dpi=dpi
) | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier integer dictionary_splat_pattern identifier block import_statement dotted_name identifier return_statement call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list dictionary_splat identifier keyword_argument identifier identifier keyword_argument identifier identifier | Render the graph, convert it to png and write it to filename |
def add_cell(self, keypath, cell):
keypath = keypath[:]
inner = self
cellname = keypath
assert keypath not in self, "Already exists: %s " % (str(keypath))
if isinstance(keypath, list):
while len(keypath) > 1:
cellname = keypath.pop(0)
if cellname not in inner:
inner.__dict__['p'][cellname] = DictCell()
inner = inner[cellname]
cellname = keypath[0]
inner.__dict__['p'][cellname] = cell
return inner[cellname] | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier subscript identifier slice expression_statement assignment identifier identifier expression_statement assignment identifier identifier assert_statement comparison_operator identifier identifier binary_operator string string_start string_content string_end parenthesized_expression call identifier argument_list identifier if_statement call identifier argument_list identifier identifier block while_statement comparison_operator call identifier argument_list identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list integer if_statement comparison_operator identifier identifier block expression_statement assignment subscript subscript attribute identifier identifier string string_start string_content string_end identifier call identifier argument_list expression_statement assignment identifier subscript identifier identifier expression_statement assignment identifier subscript identifier integer expression_statement assignment subscript subscript attribute identifier identifier string string_start string_content string_end identifier identifier return_statement subscript identifier identifier | Adds a new cell to the end of `keypath` of type `cell` |
def stop(self):
_logger.debug("Emitting quit signal for connections.")
self.__quit_ev.set()
_logger.info("Waiting for connection manager to stop.")
self.__manage_g.join() | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list | Stop all of the connections. |
def remove_namespace(self, namespace):
params = (namespace, )
execute = self.cursor.execute
execute('DELETE FROM gauged_data WHERE namespace = %s', params)
execute('DELETE FROM gauged_statistics WHERE namespace = %s', params)
execute('DELETE FROM gauged_keys WHERE namespace = %s', params)
self.remove_cache(namespace) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier tuple identifier expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement call identifier argument_list string string_start string_content string_end identifier expression_statement call identifier argument_list string string_start string_content string_end identifier expression_statement call identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list identifier | Remove all data associated with the current namespace |
def _init_go_sources(self, go_sources_arg, go2obj_arg):
gos_user = set(go_sources_arg)
if 'children' in self.kws and self.kws['children']:
gos_user |= get_leaf_children(gos_user, go2obj_arg)
gos_godag = set(go2obj_arg)
gos_source = gos_user.intersection(gos_godag)
gos_missing = gos_user.difference(gos_godag)
if not gos_missing:
return gos_source
sys.stdout.write("{N} GO IDs NOT FOUND IN GO DAG: {GOs}\n".format(
N=len(gos_missing), GOs=" ".join([str(e) for e in gos_missing])))
return gos_source | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement boolean_operator comparison_operator string string_start string_content string_end attribute identifier identifier subscript attribute identifier identifier string string_start string_content string_end block expression_statement augmented_assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block return_statement identifier expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list keyword_argument identifier call identifier argument_list identifier keyword_argument identifier call attribute string string_start string_content string_end identifier argument_list list_comprehension call identifier argument_list identifier for_in_clause identifier identifier return_statement identifier | Return GO sources which are present in GODag. |
def create_folder(self, folder):
if folder.endswith("/"):
folder = folder[:-1]
if len(folder) < 1:
raise Exception("Minimum folder name length = 1.")
if not os.path.exists(folder):
try:
os.makedirs(folder)
except Exception:
pass | module function_definition identifier parameters identifier identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier subscript identifier slice unary_operator integer if_statement comparison_operator call identifier argument_list identifier integer block raise_statement call identifier argument_list string string_start string_content string_end if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier except_clause identifier block pass_statement | Creates a folder of the given name if it doesn't already exist. |
def runtime_paths(self):
runtimepath = self._vim.options['runtimepath']
plugin = "ensime-vim"
paths = []
for path in runtimepath.split(','):
if plugin in path:
paths.append(os.path.expanduser(path))
return paths | module function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute attribute identifier identifier identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier list for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end block if_statement comparison_operator identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier return_statement identifier | All the runtime paths of ensime-vim plugin files. |
def write_int(self, value):
format = '!I'
self.data.append(struct.pack(format, int(value)))
self.size += 4 | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list identifier call identifier argument_list identifier expression_statement augmented_assignment attribute identifier identifier integer | Writes an unsigned integer to the packet |
def get(self, timeout=None):
result = None
for stage in self._output_stages:
result = stage.get(timeout)
return result | module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier none for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement identifier | Return result from the pipeline. |
def _list_directory(self, folder_id=''):
title = '%s._list_directory' % self.__class__.__name__
file_list = []
list_kwargs = {
'spaces': self.drive_space,
'fields': 'nextPageToken, files(id, name, parents, mimeType)'
}
if folder_id:
list_kwargs['q'] = "'%s' in parents" % folder_id
if not self.space_id:
self._get_space()
page_token = 1
while page_token:
try:
response = self.drive.list(**list_kwargs).execute()
except:
raise DriveConnectionError(title)
results = response.get('files', [])
for file in results:
if not folder_id and file.get('parents', [])[0] != self.space_id:
pass
else:
yield file.get('id', ''), file.get('name', ''), file.get('mimeType', '')
page_token = response.get('nextPageToken', None)
if page_token:
list_kwargs['pageToken'] = page_token
return file_list | module function_definition identifier parameters identifier default_parameter identifier string string_start string_end block expression_statement assignment identifier binary_operator string string_start string_content string_end attribute attribute identifier identifier identifier expression_statement assignment identifier list expression_statement assignment identifier dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end string string_start string_content string_end if_statement identifier block expression_statement assignment subscript identifier string string_start string_content string_end binary_operator string string_start string_content string_end identifier if_statement not_operator attribute identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier integer while_statement identifier block try_statement block expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list dictionary_splat identifier identifier argument_list except_clause block raise_statement call identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end list for_statement identifier identifier block if_statement boolean_operator not_operator identifier comparison_operator subscript call attribute identifier identifier argument_list string string_start string_content string_end list integer attribute identifier identifier block pass_statement else_clause block expression_statement yield expression_list call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none if_statement identifier block expression_statement assignment subscript identifier string string_start string_content string_end identifier return_statement identifier | a generator method for listing the contents of a directory |
def _print_stats(cls, stats: Statistics, human_format_speed: bool=True):
time_length = datetime.timedelta(
seconds=int(stats.stop_time - stats.start_time)
)
file_size = wpull.string.format_size(stats.size)
if stats.bandwidth_meter.num_samples:
speed = stats.bandwidth_meter.speed()
if human_format_speed:
speed_size_str = wpull.string.format_size(speed)
else:
speed_size_str = '{:.1f} b'.format(speed * 8)
else:
speed_size_str = _('-- B')
_logger.info(_('FINISHED.'))
_logger.info(__(
_(
'Duration: {preformatted_timedelta}. '
'Speed: {preformatted_speed_size}/s.'
),
preformatted_timedelta=time_length,
preformatted_speed_size=speed_size_str,
))
_logger.info(__(
gettext.ngettext(
'Downloaded: {num_files} file, {preformatted_file_size}.',
'Downloaded: {num_files} files, {preformatted_file_size}.',
stats.files
),
num_files=stats.files,
preformatted_file_size=file_size
))
if stats.is_quota_exceeded:
_logger.info(_('Download quota exceeded.')) | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_default_parameter identifier type identifier true block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier call identifier argument_list binary_operator attribute identifier identifier attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list if_statement identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier else_clause block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list binary_operator identifier integer else_clause block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list call identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list call identifier argument_list call identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list call identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call identifier argument_list string string_start string_content string_end | Log the final statistics to the user. |
def on_exists(fname):
if os.path.isfile(fname):
newfile = fname + ".old"
print("{} -> {}".format(fname, newfile))
os.rename(fname, newfile) | module function_definition identifier parameters identifier block if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list identifier identifier | Callback example when we try to overwrite an existing screenshot. |
def make_analysator(f):
def text_analyse(text):
try:
rv = f(text)
except Exception:
return 0.0
if not rv:
return 0.0
try:
return min(1.0, max(0.0, float(rv)))
except (ValueError, TypeError):
return 0.0
text_analyse.__doc__ = f.__doc__
return staticmethod(text_analyse) | module function_definition identifier parameters identifier block function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier call identifier argument_list identifier except_clause identifier block return_statement float if_statement not_operator identifier block return_statement float try_statement block return_statement call identifier argument_list float call identifier argument_list float call identifier argument_list identifier except_clause tuple identifier identifier block return_statement float expression_statement assignment attribute identifier identifier attribute identifier identifier return_statement call identifier argument_list identifier | Return a static text analyser function that returns float values. |
def off(self, name, callback, once=False):
if name not in self.event_listeners:
return
self.event_listeners[name].remove((callback, once)) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier false block if_statement comparison_operator identifier attribute identifier identifier block return_statement expression_statement call attribute subscript attribute identifier identifier identifier identifier argument_list tuple identifier identifier | Removes callback to the event specified by name |
def complete_object_value(
exe_context,
return_type,
field_asts,
info,
path,
result,
):
if return_type.is_type_of and not return_type.is_type_of(result, info):
raise GraphQLError(
u'Expected value of type "{}" but got: {}.'.format(
return_type, type(result).__name__
),
field_asts,
)
subfield_asts = exe_context.get_sub_fields(return_type, field_asts)
return execute_fields(exe_context, return_type, result, subfield_asts, path, info) | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block if_statement boolean_operator attribute identifier identifier not_operator call attribute identifier identifier argument_list identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier attribute call identifier argument_list identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier return_statement call identifier argument_list identifier identifier identifier identifier identifier identifier | Complete an Object value by evaluating all sub-selections. |
def _generate_name(self, space, service_name, plan_name):
return str.join('-', [space, service_name, plan_name]).lower() | module function_definition identifier parameters identifier identifier identifier identifier block return_statement call attribute call attribute identifier identifier argument_list string string_start string_content string_end list identifier identifier identifier identifier argument_list | Can generate a name based on the space, service name and plan. |
def from_jd(jd):
jd = trunc(jd) + 0.5
g = gregorian.from_jd(jd)
gy = g[0]
bstarty = EPOCH_GREGORIAN_YEAR
if jd <= gregorian.to_jd(gy, 3, 20):
x = 1
else:
x = 0
bys = gy - (bstarty + (((gregorian.to_jd(gy, 1, 1) <= jd) and x)))
year = bys + 1
days = jd - to_jd(year, 1, 1)
bld = to_jd(year, 20, 1)
if jd >= bld:
month = 20
else:
month = trunc(days / 19) + 1
day = int((jd + 1) - to_jd(year, month, 1))
return year, month, day | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator call identifier argument_list identifier float expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier identifier if_statement comparison_operator identifier call attribute identifier identifier argument_list identifier integer integer block expression_statement assignment identifier integer else_clause block expression_statement assignment identifier integer expression_statement assignment identifier binary_operator identifier parenthesized_expression binary_operator identifier parenthesized_expression parenthesized_expression boolean_operator parenthesized_expression comparison_operator call attribute identifier identifier argument_list identifier integer integer identifier identifier expression_statement assignment identifier binary_operator identifier integer expression_statement assignment identifier binary_operator identifier call identifier argument_list identifier integer integer expression_statement assignment identifier call identifier argument_list identifier integer integer if_statement comparison_operator identifier identifier block expression_statement assignment identifier integer else_clause block expression_statement assignment identifier binary_operator call identifier argument_list binary_operator identifier integer integer expression_statement assignment identifier call identifier argument_list binary_operator parenthesized_expression binary_operator identifier integer call identifier argument_list identifier identifier integer return_statement expression_list identifier identifier identifier | Calculate Bahai date from Julian day |
def width_radius_changed_cb(self, widget, val):
self.width_radius = val
self.redraw_cuts()
self.replot_all()
return True | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list return_statement true | Callback executed when the Width radius is changed. |
def analysis_of_prot_lig_interactions(self):
self.hbonds = HBonds(self.topol_data,self.trajectory,self.start,self.end,self.skip,self.analysis_cutoff,distance=3)
self.pistacking = PiStacking(self.topol_data,self.trajectory,self.start,self.end,self.skip, self.analysis_cutoff)
self.sasa = SASA(self.topol_data,self.trajectory)
self.lig_descr = LigDescr(self.topol_data)
if self.trajectory!=[]:
self.rmsf = RMSF_measurements(self.topol_data,self.topology,self.trajectory,self.ligand,self.start,self.end,self.skip)
self.salt_bridges = SaltBridges(self.topol_data,self.trajectory,self.lig_descr,self.start,self.end,self.skip,self.analysis_cutoff) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier keyword_argument identifier integer expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier if_statement comparison_operator attribute identifier identifier list block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier | The classes and function that deal with protein-ligand interaction analysis. |
def _push_status(data, item):
status = item['status'].lower()
if 'id' in item:
if 'already pushed' in status or 'already exists' in status:
already_pushed = data.setdefault('Layers', {}).setdefault(
'Already_Pushed', [])
already_pushed.append(item['id'])
elif 'successfully pushed' in status or status == 'pushed':
pushed = data.setdefault('Layers', {}).setdefault(
'Pushed', [])
pushed.append(item['id']) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list if_statement comparison_operator string string_start string_content string_end identifier block if_statement boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list string string_start string_content string_end dictionary identifier argument_list string string_start string_content string_end list expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end elif_clause boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list string string_start string_content string_end dictionary identifier argument_list string string_start string_content string_end list expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end | Process a status update from a docker push, updating the data structure |
def check_postconditions(f, return_value):
f = getattr(f, 'wrapped_fn', f)
if f and hasattr(f, 'postconditions'):
for cond in f.postconditions:
cond(return_value) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end identifier if_statement boolean_operator identifier call identifier argument_list identifier string string_start string_content string_end block for_statement identifier attribute identifier identifier block expression_statement call identifier argument_list identifier | Runs all of the postconditions. |
def time_since(self, mtype):
if not mtype in self.messages:
return time.time() - self.start_time
return time.time() - self.messages[mtype]._timestamp | module function_definition identifier parameters identifier identifier block if_statement not_operator comparison_operator identifier attribute identifier identifier block return_statement binary_operator call attribute identifier identifier argument_list attribute identifier identifier return_statement binary_operator call attribute identifier identifier argument_list attribute subscript attribute identifier identifier identifier identifier | return the time since the last message of type mtype was received |
def list_i2str(ilist):
slist = []
for el in ilist:
slist.append(str(el))
return slist | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list call identifier argument_list identifier return_statement identifier | Convert an integer list into a string list. |
def main(args=None):
streamsx._streams._version._mismatch_check('streamsx.topology.context')
try:
sr = run_cmd(args)
sr['return_code'] = 0
except:
sr = {'return_code':1, 'error': sys.exc_info()}
return sr | module function_definition identifier parameters default_parameter identifier none block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end try_statement block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment subscript identifier string string_start string_content string_end integer except_clause block expression_statement assignment identifier dictionary pair string string_start string_content string_end integer pair string string_start string_content string_end call attribute identifier identifier argument_list return_statement identifier | Performs an action against a Streaming Analytics service. |
def dump_ckan(m):
doc = MetapackDoc(cache=m.cache)
doc.new_section('Groups', 'Title Description Id Image_url'.split())
doc.new_section('Organizations', 'Title Description Id Image_url'.split())
c = RemoteCKAN(m.ckan_url, apikey=m.api_key)
for g in c.action.group_list(all_fields=True):
print(g.keys())
for o in c.action.organization_list(all_fields=True):
print(g.keys()) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list expression_statement assignment identifier call identifier argument_list attribute identifier identifier keyword_argument identifier attribute identifier identifier for_statement identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier true block expression_statement call identifier argument_list call attribute identifier identifier argument_list for_statement identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier true block expression_statement call identifier argument_list call attribute identifier identifier argument_list | Create a groups and organization file |
def _get_deltas(event):
delta_x = round(event.deltaX())
delta_y = round(event.deltaY())
delta_z = round(event.deltaZ())
return delta_x, delta_y, delta_z | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list return_statement expression_list identifier identifier identifier | Get the changes from the appkit event. |
def make_client(api_version, session=None,
endpoint=None, service_type='monitoring'):
client_cls = utils.get_client_class('monitoring', api_version, VERSION_MAP)
c = client_cls(
session=session,
service_type=service_type,
endpoint=endpoint,
app_name='monascaclient',
app_version=version.version_string,
)
return c | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier attribute identifier identifier return_statement identifier | Returns an monitoring API client. |
def ca_main_axis(self):
try:
ca_ind = self.dim_types.index(DT.CA_SUBVAR)
return 1 - ca_ind
except ValueError:
return None | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement binary_operator integer identifier except_clause identifier block return_statement none | For univariate CA, the main axis is the categorical axis |
def minizinc_version():
vs = _run_minizinc('--version')
m = re.findall('version ([\d\.]+)', vs)
if not m:
raise RuntimeError('MiniZinc executable not found.')
return m[0] | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier if_statement not_operator identifier block raise_statement call identifier argument_list string string_start string_content string_end return_statement subscript identifier integer | Returns the version of the found minizinc executable. |
def parents(self, node):
return [
parent for parent in
getattr( node, 'parents', [] )
if getattr(parent, 'tree', self.TREE) == self.TREE
] | module function_definition identifier parameters identifier identifier block return_statement list_comprehension identifier for_in_clause identifier call identifier argument_list identifier string string_start string_content string_end list if_clause comparison_operator call identifier argument_list identifier string string_start string_content string_end attribute identifier identifier attribute identifier identifier | Determine all parents of node in our tree |
def parse(cls, string):
match = re.match(r'^(?P<name>[A-Za-z0-9\.\-_]+)\s+' +
'(?P<value>[0-9\.]+)\s+' +
'(?P<timestamp>[0-9\.]+)(\n?)$',
string)
try:
groups = match.groupdict()
return Metric(groups['name'],
groups['value'],
float(groups['timestamp']))
except:
raise DiamondException(
"Metric could not be parsed from string: %s." % string) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator binary_operator string string_start string_content string_end string string_start string_content string_end string string_start string_content escape_sequence string_end identifier try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list return_statement call identifier argument_list subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end call identifier argument_list subscript identifier string string_start string_content string_end except_clause block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier | Parse a string and create a metric |
def post(self, path, payload):
body = json.dumps(payload)
return self._request(path, 'POST', body) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end identifier | Make a POST request from the API. |
def weighted_choice(population):
random_number = random.betavariate(1, 2.5)
ind = int(random_number*len(population))
ind = min(max(ind, 0), len(population)-1)
return population[ind][0] | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list integer float expression_statement assignment identifier call identifier argument_list binary_operator identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list call identifier argument_list identifier integer binary_operator call identifier argument_list identifier integer return_statement subscript subscript identifier identifier integer | Randomly select, fitness determines probability of being selected |
def region_name(self, language=DEFAULT_LANGUAGE, min_score: int=75) -> str:
return self._get_name('region', language, min_score) | module function_definition identifier parameters identifier default_parameter identifier identifier typed_default_parameter identifier type identifier integer type identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier | Describe the region part of the language tag in a natural language. |
def _subst_libs(env, libs):
if SCons.Util.is_String(libs):
libs = env.subst(libs)
if SCons.Util.is_String(libs):
libs = libs.split()
elif SCons.Util.is_Sequence(libs):
_libs = []
for l in libs:
_libs += _subst_libs(env, l)
libs = _libs
else:
libs = [libs]
return libs | module function_definition identifier parameters identifier identifier block if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list elif_clause call attribute attribute identifier identifier identifier argument_list identifier block expression_statement assignment identifier list for_statement identifier identifier block expression_statement augmented_assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier list identifier return_statement identifier | Substitute environment variables and split into list. |
def widgetSubCheckBoxRect(widget, option):
opt = QtWidgets.QStyleOption()
opt.initFrom(widget)
style = widget.style()
return style.subElementRect(QtWidgets.QStyle.SE_ViewItemCheckIndicator, opt, widget) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list attribute attribute identifier identifier identifier identifier identifier | Returns the rectangle of a check box drawn as a sub element of widget |
def facade(factory):
wrapper = FacadeDescriptor(factory.__name__, factory)
return update_wrapper(wrapper, factory) | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier identifier return_statement call identifier argument_list identifier identifier | Declare a method as a facade factory. |
def _get_cursor(self):
_options = self._get_options()
conn = psycopg2.connect(host=_options['host'],
user=_options['user'],
password=_options['pass'],
dbname=_options['db'],
port=_options['port'])
cursor = conn.cursor()
try:
yield cursor
log.debug('Connected to POSTGRES DB')
except psycopg2.DatabaseError as err:
log.exception('Error in ext_pillar POSTGRES: %s', err.args)
finally:
conn.close() | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier subscript identifier string string_start string_content string_end keyword_argument identifier subscript identifier string string_start string_content string_end keyword_argument identifier subscript identifier string string_start string_content string_end keyword_argument identifier subscript identifier string string_start string_content string_end keyword_argument identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list try_statement block expression_statement yield identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end except_clause as_pattern attribute identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier finally_clause block expression_statement call attribute identifier identifier argument_list | Yield a POSTGRES cursor |
def approle_token(vault_client, role_id, secret_id):
resp = vault_client.auth_approle(role_id, secret_id)
if 'auth' in resp and 'client_token' in resp['auth']:
return resp['auth']['client_token']
else:
raise aomi.exceptions.AomiCredentials('invalid approle') | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier if_statement boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator string string_start string_content string_end subscript identifier string string_start string_content string_end block return_statement subscript subscript identifier string string_start string_content string_end string string_start string_content string_end else_clause block raise_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end | Returns a vault token based on the role and seret id |
def close_all_pages(self):
state_machine_m_list = [tab['state_machine_m'] for tab in self.tabs.values()]
for state_machine_m in state_machine_m_list:
self.on_close_clicked(None, state_machine_m, None, force=True) | module function_definition identifier parameters identifier block expression_statement assignment identifier list_comprehension subscript identifier string string_start string_content string_end for_in_clause identifier call attribute attribute identifier identifier identifier argument_list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list none identifier none keyword_argument identifier true | Closes all tabs of the state machines editor. |
def _select_md5sum_arch(self, md5sum, md5sum64):
if md5sum and md5sum64:
if self.meta.arch == "x86_64":
return md5sum64
else:
return md5sum
if md5sum:
return md5sum
else:
return md5sum64 | module function_definition identifier parameters identifier identifier identifier block if_statement boolean_operator identifier identifier block if_statement comparison_operator attribute attribute identifier identifier identifier string string_start string_content string_end block return_statement identifier else_clause block return_statement identifier if_statement identifier block return_statement identifier else_clause block return_statement identifier | Return checksums by arch |
def delete(self):
with self._qpart:
for cursor in self.cursors():
if cursor.hasSelection():
cursor.deleteChar() | module function_definition identifier parameters identifier block with_statement with_clause with_item attribute identifier identifier block for_statement identifier call attribute identifier identifier argument_list block if_statement call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list | Del or Backspace pressed. Delete selection |
def _parse_fail(name, var_type, value, values):
raise ValueError(
'Could not parse hparam \'%s\' of type \'%s\' with value \'%s\' in %s' %
(name, var_type.__name__, value, values)) | module function_definition identifier parameters identifier identifier identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence string_end tuple identifier attribute identifier identifier identifier identifier | Helper function for raising a value error for bad assignment. |
def dict(self):
try:
skewness = self.skewness
kurtosis = self.kurtosis
except ZeroDivisionError:
skewness = kurtosis = float('nan')
base_cols = [
('name', self.column_name),
('flags', self.flags),
('type', self.type.__name__ ),
('lom', self.lom),
('count', self.n),
('nuniques', self.nuniques),
('width', self.size),
]
descriptive_cols = [
('mean', self.mean),
('std', self.stddev),
('min', self.min),
('p25', self.p25),
('p50', self.p50),
('p75', self.p75),
('max', self.max)
]
distribution_cols = [
('skewness', skewness),
('kurtosis', kurtosis),
('hist', self.bins),
('text_hist', text_hist(self.bins)),
]
sample_values_cols = [
('uvalues', self.uvalues)
]
return OrderedDict(
base_cols +
(descriptive_cols if self.descriptive else []) +
(distribution_cols if self.distribution else []) +
(sample_values_cols if self.sample_values else [])
) | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier except_clause identifier block expression_statement assignment identifier assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier list tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute attribute identifier identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier list tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier list tuple string string_start string_content string_end identifier tuple string string_start string_content string_end identifier tuple string string_start string_content string_end attribute identifier identifier tuple string string_start string_content string_end call identifier argument_list attribute identifier identifier expression_statement assignment identifier list tuple string string_start string_content string_end attribute identifier identifier return_statement call identifier argument_list binary_operator binary_operator binary_operator identifier parenthesized_expression conditional_expression identifier attribute identifier identifier list parenthesized_expression conditional_expression identifier attribute identifier identifier list parenthesized_expression conditional_expression identifier attribute identifier identifier list | Return a dict that can be passed into the ColumnStats constructor |
def apply_selector(objs, selector):
out = []
for obj in objs:
timer.log('Applying selector: %s' % selector)
out += list(jsonselect.match(selector, objs))
timer.log('done applying selector')
return out | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier expression_statement augmented_assignment identifier call identifier argument_list call attribute identifier identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement identifier | Returns a list of objects which match the selector in any of objs. |
def delete(self, id):
path = partial(_path, self.adapter)
path = path(id)
return self._delete(path) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier | delete a time entry. |
def restart(self):
version = self.get_version()
command = [
"haproxy",
"-f", self.config_file_path, "-p", self.pid_file_path
]
if version and version >= (1, 5, 0):
command.extend(["-L", self.peer.name])
if os.path.exists(self.pid_file_path):
with open(self.pid_file_path) as fd:
command.extend(["-sf", fd.read().replace("\n", "")])
try:
output = subprocess.check_output(command)
except subprocess.CalledProcessError as e:
logger.error("Failed to restart HAProxy: %s", str(e))
return
if output:
logging.error("haproxy says: %s", output)
logger.info("Gracefully restarted HAProxy.") | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end attribute identifier identifier string string_start string_content string_end attribute identifier identifier if_statement boolean_operator identifier comparison_operator identifier tuple integer integer integer block expression_statement call attribute identifier identifier argument_list list string string_start string_content string_end attribute attribute identifier identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list list string string_start string_content string_end call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content escape_sequence string_end string string_start string_end try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list identifier except_clause as_pattern attribute identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call identifier argument_list identifier return_statement if_statement identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end | Performs a soft reload of the HAProxy process. |
def _register_parser(cls):
assert cls.cls_msg_type is not None
assert cls.cls_msg_type not in _MSG_PARSERS
_MSG_PARSERS[cls.cls_msg_type] = cls.parser
return cls | module function_definition identifier parameters identifier block assert_statement comparison_operator attribute identifier identifier none assert_statement comparison_operator attribute identifier identifier identifier expression_statement assignment subscript identifier attribute identifier identifier attribute identifier identifier return_statement identifier | class decorator to register msg parser |
def _typedef_code(t, base=0, refs=None, kind=_kind_static, heap=False):
v = _Typedef(base=_basicsize(t, base=base),
refs=refs,
both=False, kind=kind, type=t)
v.save(t, base=base, heap=heap)
return v | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier none default_parameter identifier identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list keyword_argument identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier false keyword_argument identifier identifier keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier return_statement identifier | Add new typedef for code only. |
def fgmc(log_fg_ratios, mu_log_vt, sigma_log_vt, Rf, maxfg):
Lb = np.random.uniform(0., maxfg, len(Rf))
pquit = 0
while pquit < 0.1:
nsamp = len(Lb)
Rf_sel = np.random.choice(Rf, nsamp)
vt = np.random.lognormal(mu_log_vt, sigma_log_vt, len(Rf_sel))
Lf = Rf_sel * vt
log_Lf, log_Lb = log(Lf), log(Lb)
plR = 0
for lfr in log_fg_ratios:
plR += np.logaddexp(lfr + log_Lf, log_Lb)
plR -= (Lf + Lb)
plRn = plR - max(plR)
idx = np.exp(plRn) > np.random.random(len(plRn))
pquit = ss.stats.ks_2samp(Lb, Lb[idx])[1]
Lb = Lb[idx]
return Rf_sel[idx], Lf[idx], Lb | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list float identifier call identifier argument_list identifier expression_statement assignment identifier integer while_statement comparison_operator identifier float block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier call identifier argument_list identifier expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment pattern_list identifier identifier expression_list call identifier argument_list identifier call identifier argument_list identifier expression_statement assignment identifier integer for_statement identifier identifier block expression_statement augmented_assignment identifier call attribute identifier identifier argument_list binary_operator identifier identifier identifier expression_statement augmented_assignment identifier parenthesized_expression binary_operator identifier identifier expression_statement assignment identifier binary_operator identifier call identifier argument_list identifier expression_statement assignment identifier comparison_operator call attribute identifier identifier argument_list identifier call attribute attribute identifier identifier identifier argument_list call identifier argument_list identifier expression_statement assignment identifier subscript call attribute attribute identifier identifier identifier argument_list identifier subscript identifier identifier integer expression_statement assignment identifier subscript identifier identifier return_statement expression_list subscript identifier identifier subscript identifier identifier identifier | Function to fit the likelihood Fixme |
def save_to_folders(self, parameter_space, folder_name, runs):
self.space_to_folders(self.db.get_results(), {}, parameter_space, runs,
folder_name) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list dictionary identifier identifier identifier | Save results to a folder structure. |
def bk_default(cls):
"Make the current background color the default."
wAttributes = cls._get_text_attributes()
wAttributes &= ~win32.BACKGROUND_MASK
wAttributes &= ~win32.BACKGROUND_INTENSITY
cls._set_text_attributes(wAttributes) | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement augmented_assignment identifier unary_operator attribute identifier identifier expression_statement augmented_assignment identifier unary_operator attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier | Make the current background color the default. |
def import_gpg_key(key):
if not key:
raise CryptoritoError('Invalid GPG Key')
key_fd, key_filename = mkstemp("cryptorito-gpg-import")
key_handle = os.fdopen(key_fd, 'w')
key_handle.write(polite_string(key))
key_handle.close()
cmd = flatten([gnupg_bin(), gnupg_home(), "--import", key_filename])
output = stderr_output(cmd)
msg = 'gpg: Total number processed: 1'
output_bits = polite_string(output).split('\n')
return len([line for line in output_bits if line == msg]) == 1 | module function_definition identifier parameters identifier block if_statement not_operator identifier block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment pattern_list identifier identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list list call identifier argument_list call identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list string string_start string_content escape_sequence string_end return_statement comparison_operator call identifier argument_list list_comprehension identifier for_in_clause identifier identifier if_clause comparison_operator identifier identifier integer | Imports a GPG key |
def _apply_mask(
data: np.ndarray,
encoded_fill_values: list,
decoded_fill_value: Any,
dtype: Any,
) -> np.ndarray:
data = np.asarray(data, dtype=dtype)
condition = False
for fv in encoded_fill_values:
condition |= data == fv
return np.where(condition, decoded_fill_value, data) | module function_definition identifier parameters typed_parameter identifier type attribute identifier identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier expression_statement assignment identifier false for_statement identifier identifier block expression_statement augmented_assignment identifier comparison_operator identifier identifier return_statement call attribute identifier identifier argument_list identifier identifier identifier | Mask all matching values in a NumPy arrays. |
def define_plugin_entry(name, module_name):
if isinstance(name, tuple):
entry, name = name
else:
entry = name
return '%s = %s:%s' % (entry, module_name, name) | module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment pattern_list identifier identifier identifier else_clause block expression_statement assignment identifier identifier return_statement binary_operator string string_start string_content string_end tuple identifier identifier identifier | helper to produce lines suitable for setup.py's entry_points |
def trips_process_xml():
if request.method == 'OPTIONS':
return {}
response = request.body.read().decode('utf-8')
body = json.loads(response)
xml_str = body.get('xml_str')
tp = trips.process_xml(xml_str)
return _stmts_from_proc(tp) | module function_definition identifier parameters block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement dictionary expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call identifier argument_list identifier | Process TRIPS EKB XML and return INDRA Statements. |
def currency_multiplier(src_currency, dest_currency):
'returns equivalent value in USD for an amt of currency_code'
if src_currency == 'USD':
return 1.0
usd_mult = currency_rates()[src_currency]
if dest_currency == 'USD':
return usd_mult
return usd_mult/currency_rates()[dest_currency] | module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end if_statement comparison_operator identifier string string_start string_content string_end block return_statement float expression_statement assignment identifier subscript call identifier argument_list identifier if_statement comparison_operator identifier string string_start string_content string_end block return_statement identifier return_statement binary_operator identifier subscript call identifier argument_list identifier | returns equivalent value in USD for an amt of currency_code |
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