code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def filter_files(self, path):
excludes = r'|'.join([fnmatch.translate(x) for x in self.project.EXCLUDES]) or r'$.'
for root, dirs, files in os.walk(path, topdown=True):
dirs[:] = [d for d in dirs if not re.match(excludes, d)]
dirs[:] = [os.path.join(root, d) for d in dirs]
rel_path = os.path.relpath(root, path)
paths = []
for f in files:
if rel_path == '.':
file_path = f
else:
file_path = os.path.join(rel_path, f)
if not re.match(excludes, file_path):
paths.append(f)
files[:] = paths
yield root, dirs, files | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier boolean_operator call attribute string string_start string_content string_end identifier argument_list list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier attribute attribute identifier identifier identifier string string_start string_content string_end for_statement pattern_list identifier identifier identifier call attribute identifier identifier argument_list identifier keyword_argument identifier true block expression_statement assignment subscript identifier slice list_comprehension identifier for_in_clause identifier identifier if_clause not_operator call attribute identifier identifier argument_list identifier identifier expression_statement assignment subscript identifier slice list_comprehension call attribute attribute identifier identifier identifier argument_list identifier identifier for_in_clause identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier list for_statement identifier identifier block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier identifier else_clause block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier if_statement not_operator call attribute identifier identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment subscript identifier slice identifier expression_statement yield expression_list identifier identifier identifier | Exclude files based on blueprint and project configuration as well as hidden files. |
def OnReplaceFind(self, event):
event.text = event.GetFindString()
event.flags = self._wxflag2flag(event.GetFlags())
self.OnFind(event) | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier | Called when a find operation is started from F&R dialog |
def _preprocess_add_items(self, items):
paths = []
entries = []
for item in items:
if isinstance(item, string_types):
paths.append(self._to_relative_path(item))
elif isinstance(item, (Blob, Submodule)):
entries.append(BaseIndexEntry.from_blob(item))
elif isinstance(item, BaseIndexEntry):
entries.append(item)
else:
raise TypeError("Invalid Type: %r" % item)
return (paths, entries) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list for_statement identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier elif_clause call identifier argument_list identifier tuple identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier elif_clause call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block raise_statement call identifier argument_list binary_operator string string_start string_content string_end identifier return_statement tuple identifier identifier | Split the items into two lists of path strings and BaseEntries. |
def tell(self):
pos = ctypes.c_size_t()
check_call(_LIB.MXRecordIOReaderTell(self.handle, ctypes.byref(pos)))
return pos.value | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call identifier argument_list call attribute identifier identifier argument_list attribute identifier identifier call attribute identifier identifier argument_list identifier return_statement attribute identifier identifier | Returns the current position of read head. |
def find_project_dir(path=os.getcwd()):
path_split = os.path.split(path)
while path_split[1]:
if in_armstrong_project(path):
return path
path = path_split[0]
path_split = os.path.split(path)
return None | module function_definition identifier parameters default_parameter identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier while_statement subscript identifier integer block if_statement call identifier argument_list identifier block return_statement identifier expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement none | Attempt to find the project root, returns None if not found |
def str2actfunc(act_func):
if act_func == 'sigmoid':
return tf.nn.sigmoid
elif act_func == 'tanh':
return tf.nn.tanh
elif act_func == 'relu':
return tf.nn.relu | module function_definition identifier parameters identifier block if_statement comparison_operator identifier string string_start string_content string_end block return_statement attribute attribute identifier identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block return_statement attribute attribute identifier identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block return_statement attribute attribute identifier identifier identifier | Convert activation function name to tf function. |
def ret_range_minions(self):
if HAS_RANGE is False:
raise RuntimeError("Python lib 'seco.range' is not available")
minions = {}
range_hosts = _convert_range_to_list(self.tgt, __opts__['range_server'])
return self._ret_minions(range_hosts.__contains__) | module function_definition identifier parameters identifier block if_statement comparison_operator identifier false block raise_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier dictionary expression_statement assignment identifier call identifier argument_list attribute identifier identifier subscript identifier string string_start string_content string_end return_statement call attribute identifier identifier argument_list attribute identifier identifier | Return minions that are returned by a range query |
def _get_symbols_to_logits_fn(self, max_decode_length):
timing_signal = model_utils.get_position_encoding(
max_decode_length + 1, self.params.hidden_size)
decoder_self_attention_bias = model_utils.get_decoder_self_attention_bias(
max_decode_length)
def symbols_to_logits_fn(ids, i, cache):
decoder_input = ids[:, -1:]
decoder_input = self.embedding_softmax_layer(decoder_input)
decoder_input += timing_signal[i:i + 1]
self_attention_bias = decoder_self_attention_bias[:, :, i:i + 1, :i + 1]
decoder_outputs = self.decoder_stack(
decoder_input, cache.get("encoder_outputs"), self_attention_bias,
cache.get("encoder_decoder_attention_bias"), cache)
logits = self.embedding_softmax_layer.linear(decoder_outputs)
logits = tf.squeeze(logits, axis=[1])
return logits, cache
return symbols_to_logits_fn | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator identifier integer attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier subscript identifier slice slice unary_operator integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement augmented_assignment identifier subscript identifier slice identifier binary_operator identifier integer expression_statement assignment identifier subscript identifier slice slice slice identifier binary_operator identifier integer slice binary_operator identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier list integer return_statement expression_list identifier identifier return_statement identifier | Returns a decoding function that calculates logits of the next tokens. |
def select_eep(self, rorg_func, rorg_type, direction=None, command=None):
self.rorg_func = rorg_func
self.rorg_type = rorg_type
self._profile = self.eep.find_profile(self._bit_data, self.rorg, rorg_func, rorg_type, direction, command)
return self._profile is not None | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none default_parameter identifier none block expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier attribute identifier identifier identifier identifier identifier identifier return_statement comparison_operator attribute identifier identifier none | Set EEP based on FUNC and TYPE |
def from_file(cls, filename, sr=22050):
y, sr = librosa.load(filename, sr=sr)
return cls(y, sr) | module function_definition identifier parameters identifier identifier default_parameter identifier integer block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier return_statement call identifier argument_list identifier identifier | Loads an audiofile, uses sr=22050 by default. |
def _handle_minion_event(self, load):
id_ = load['id']
if load.get('tag', '') == '_salt_error':
log.error(
'Received minion error from [%s]: %s',
id_, load['data']['message']
)
for event in load.get('events', []):
event_data = event.get('data', {})
if 'minions' in event_data:
jid = event_data.get('jid')
if not jid:
continue
minions = event_data['minions']
try:
salt.utils.job.store_minions(
self.opts,
jid,
minions,
mminion=self.mminion,
syndic_id=id_)
except (KeyError, salt.exceptions.SaltCacheError) as exc:
log.error(
'Could not add minion(s) %s for job %s: %s',
minions, jid, exc
) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier subscript subscript identifier string string_start string_content string_end string string_start string_content string_end for_statement identifier call attribute identifier identifier argument_list string string_start string_content string_end list block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement not_operator identifier block continue_statement expression_statement assignment identifier subscript identifier string string_start string_content string_end try_statement block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier except_clause as_pattern tuple identifier attribute attribute identifier identifier identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier identifier | Act on specific events from minions |
def get(self, **kwargs):
url = '%s/%s' % (self.base_url, kwargs['notification_id'])
resp = self.client.list(path=url)
return resp | module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple attribute identifier identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier return_statement identifier | Get the details for a specific notification. |
def ij_jlk_to_ilk(A, B):
return A.dot(B.reshape(B.shape[0], -1)).reshape(A.shape[0], B.shape[1], B.shape[2]) | module function_definition identifier parameters identifier identifier block return_statement call attribute call attribute identifier identifier argument_list call attribute identifier identifier argument_list subscript attribute identifier identifier integer unary_operator integer identifier argument_list subscript attribute identifier identifier integer subscript attribute identifier identifier integer subscript attribute identifier identifier integer | Faster version of einsum 'ij,jlk->ilk' |
def _scan(self):
utt_sizes = {}
for dset_name in self.utt_ids:
per_container = []
for cnt in self.containers:
dset = cnt._file[dset_name]
dtype_size = dset.dtype.itemsize
record_size = dtype_size * dset.size
per_container.append(record_size)
utt_size = sum(per_container)
if utt_size > self.partition_size:
raise ValueError('Records in "{0}" are larger than the partition size'.format(dset_name))
utt_sizes[dset_name] = utt_size
return utt_sizes | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement identifier attribute identifier identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier identifier expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier binary_operator identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier attribute identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment subscript identifier identifier identifier return_statement identifier | For every utterance, calculate the size it will need in memory. |
def minicalendar(context):
today = dt.date.today()
request = context['request']
home = request.site.root_page
cal = CalendarPage.objects.live().descendant_of(home).first()
calUrl = cal.get_url(request) if cal else None
if cal:
events = cal._getEventsByWeek(request, today.year, today.month)
else:
events = getAllEventsByWeek(request, today.year, today.month)
return {'request': request,
'today': today,
'year': today.year,
'month': today.month,
'calendarUrl': calUrl,
'monthName': calendar.month_name[today.month],
'weekdayInfo': zip(weekday_abbr, weekday_name),
'events': events} | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute call attribute call attribute attribute identifier identifier identifier argument_list identifier argument_list identifier identifier argument_list expression_statement assignment identifier conditional_expression call attribute identifier identifier argument_list identifier identifier none if_statement identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier attribute identifier identifier attribute identifier identifier return_statement dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end subscript attribute identifier identifier attribute identifier identifier pair string string_start string_content string_end call identifier argument_list identifier identifier pair string string_start string_content string_end identifier | Displays a little ajax version of the calendar. |
def register(linter):
MANAGER.register_transform(astroid.Call, transform_declare)
MANAGER.register_transform(astroid.Module, transform_conf_module) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier identifier | Register all transforms with the linter. |
def _energy_distance_from_distance_matrices(
distance_xx, distance_yy, distance_xy):
return (2 * np.mean(distance_xy) - np.mean(distance_xx) -
np.mean(distance_yy)) | module function_definition identifier parameters identifier identifier identifier block return_statement parenthesized_expression binary_operator binary_operator binary_operator integer call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier | Compute energy distance with precalculated distance matrices. |
def generate_request_access_signature(parameters, secret_key):
keys = parameters.keys()
keys.sort()
encoded_pairs = [urlencode({key: parameters[key]}) for key in keys]
serialized_parameters = '&'.join(encoded_pairs)
string_to_hash = '%s:%s' % (secret_key, serialized_parameters)
return sha256(string_to_hash).hexdigest() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier list_comprehension call identifier argument_list dictionary pair identifier subscript identifier identifier for_in_clause identifier identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier identifier return_statement call attribute call identifier argument_list identifier identifier argument_list | Generate the parameter signature used during third party access requests |
def make_category(self, string, parent=None, order=1):
cat = Category(
name=string.strip(),
slug=slugify(SLUG_TRANSLITERATOR(string.strip()))[:49],
order=order
)
cat._tree_manager.insert_node(cat, parent, 'last-child', True)
cat.save()
if parent:
parent.rght = cat.rght + 1
parent.save()
return cat | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier integer block expression_statement assignment identifier call identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list keyword_argument identifier subscript call identifier argument_list call identifier argument_list call attribute identifier identifier argument_list slice integer keyword_argument identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier string string_start string_content string_end true expression_statement call attribute identifier identifier argument_list if_statement identifier block expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list return_statement identifier | Make and save a category object from a string |
def __rowResultToTick(self, row):
keyValues = row.columns
for field in TICK_FIELDS:
key = "%s:%s" % (HBaseDAM.TICK, field)
if 'time' != field and keyValues[key].value:
keyValues[key].value = float(keyValues[key].value)
return Tick(*[keyValues["%s:%s" % (HBaseDAM.TICK, field)].value for field in TICK_FIELDS]) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier for_statement identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple attribute identifier identifier identifier if_statement boolean_operator comparison_operator string string_start string_content string_end identifier attribute subscript identifier identifier identifier block expression_statement assignment attribute subscript identifier identifier identifier call identifier argument_list attribute subscript identifier identifier identifier return_statement call identifier argument_list list_splat list_comprehension attribute subscript identifier binary_operator string string_start string_content string_end tuple attribute identifier identifier identifier identifier for_in_clause identifier identifier | convert rowResult from Hbase to Tick |
def register_views(*args):
config = args[0]
settings = config.get_settings()
pages_config = settings[CONFIG_MODELS]
resources = resources_of_config(pages_config)
for resource in resources:
if hasattr(resource, '__table__')\
and not hasattr(resource, 'model'):
continue
resource.model.pyramid_pages_template = resource.template
config.add_view(resource.view,
attr=resource.attr,
route_name=PREFIX_PAGE,
renderer=resource.template,
context=resource,
permission=PREFIX_PAGE) | module function_definition identifier parameters list_splat_pattern identifier block expression_statement assignment identifier subscript identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier subscript identifier identifier expression_statement assignment identifier call identifier argument_list identifier for_statement identifier identifier block if_statement boolean_operator call identifier argument_list identifier string string_start string_content string_end line_continuation not_operator call identifier argument_list identifier string string_start string_content string_end block continue_statement expression_statement assignment attribute attribute identifier identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Registration view for each resource from config. |
def stopService(self):
Service.stopService(self)
removeDestination(self)
self._reactor.callFromThread(self._reactor.stop)
return deferToThreadPool(
self._mainReactor,
self._mainReactor.getThreadPool(), self._thread.join) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier return_statement call identifier argument_list attribute identifier identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier | Stop the writer thread, wait for it to finish. |
def usable_id(cls, id):
try:
qry_id = cls.from_name(id)
if not qry_id:
qry_id = cls.from_ip(id)
if not qry_id:
qry_id = cls.from_vhost(id)
except Exception:
qry_id = None
if not qry_id:
msg = 'unknown identifier %s' % id
cls.error(msg)
return qry_id | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier except_clause identifier block expression_statement assignment identifier none if_statement not_operator identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Retrieve id from input which can be hostname, vhost, id. |
def _remove_unit_rule(g, rule):
new_rules = [x for x in g.rules if x != rule]
refs = [x for x in g.rules if x.lhs == rule.rhs[0]]
new_rules += [build_unit_skiprule(rule, ref) for ref in refs]
return Grammar(new_rules) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension identifier for_in_clause identifier attribute identifier identifier if_clause comparison_operator identifier identifier expression_statement assignment identifier list_comprehension identifier for_in_clause identifier attribute identifier identifier if_clause comparison_operator attribute identifier identifier subscript attribute identifier identifier integer expression_statement augmented_assignment identifier list_comprehension call identifier argument_list identifier identifier for_in_clause identifier identifier return_statement call identifier argument_list identifier | Removes 'rule' from 'g' without changing the langugage produced by 'g'. |
def help_cli_search(self):
help = '%sSearch: %s returns sample_sets, a sample_set is a set/list of md5s.' % (color.Yellow, color.Green)
help += '\n\n\t%sSearch for all samples in the database that are known bad pe files,' % (color.Green)
help += '\n\t%sthis command returns the sample_set containing the matching items'% (color.Green)
help += '\n\t%s> my_bad_exes = search([\'bad\', \'exe\'])' % (color.LightBlue)
help += '\n\n\t%sRun workers on this sample_set:' % (color.Green)
help += '\n\t%s> pe_outputs = pe_features(my_bad_exes) %s' % (color.LightBlue, color.Normal)
help += '\n\n\t%sLoop on the generator (or make a DataFrame see >help dataframe)' % (color.Green)
help += '\n\t%s> for output in pe_outputs: %s' % (color.LightBlue, color.Normal)
help += '\n\t\t%s print output %s' % (color.LightBlue, color.Normal)
return help | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple attribute identifier identifier attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence string_end parenthesized_expression attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence string_end parenthesized_expression attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence escape_sequence string_end parenthesized_expression attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence string_end parenthesized_expression attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence string_end tuple attribute identifier identifier attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence string_end parenthesized_expression attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence string_end tuple attribute identifier identifier attribute identifier identifier expression_statement augmented_assignment identifier binary_operator string string_start string_content escape_sequence escape_sequence escape_sequence string_end tuple attribute identifier identifier attribute identifier identifier return_statement identifier | Help for Workbench CLI Search |
def analyzed_projects(raw_df):
df = raw_df[['PRONAC', 'proponenteCgcCpf']]
analyzed_projects = df.groupby('proponenteCgcCpf')[
'PRONAC'
].agg(['unique', 'nunique'])
analyzed_projects.columns = ['pronac_list', 'num_pronacs']
return analyzed_projects | module function_definition identifier parameters identifier block expression_statement assignment identifier subscript identifier list string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute subscript call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end identifier argument_list list string string_start string_content string_end string string_start string_content string_end expression_statement assignment attribute identifier identifier list string string_start string_content string_end string string_start string_content string_end return_statement identifier | Return all projects that was analyzed. |
def updates_selection(update_selection):
def handle_update(selection, *args, **kwargs):
old_selection = selection.get_all()
update_selection(selection, *args, **kwargs)
new_selection = selection.get_all()
affected_models = old_selection ^ new_selection
if len(affected_models) != 0:
deselected_models = old_selection - new_selection
selected_models = new_selection - old_selection
map(selection.relieve_model, deselected_models)
map(selection.observe_model, selected_models)
selection.update_core_element_lists()
if selection.focus and selection.focus not in new_selection:
del selection.focus
affected_classes = set(model.core_element.__class__ for model in affected_models)
msg_namedtuple = SelectionChangedSignalMsg(update_selection.__name__, new_selection, old_selection,
affected_classes)
selection.selection_changed_signal.emit(msg_namedtuple)
if selection.parent_signal is not None:
selection.parent_signal.emit(msg_namedtuple)
return handle_update | module function_definition identifier parameters identifier block function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call identifier argument_list identifier list_splat identifier dictionary_splat identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator identifier identifier if_statement comparison_operator call identifier argument_list identifier integer block expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment identifier binary_operator identifier identifier expression_statement call identifier argument_list attribute identifier identifier identifier expression_statement call identifier argument_list attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list if_statement boolean_operator attribute identifier identifier comparison_operator attribute identifier identifier identifier block delete_statement attribute identifier identifier expression_statement assignment identifier call identifier generator_expression attribute attribute identifier identifier identifier for_in_clause identifier identifier expression_statement assignment identifier call identifier argument_list attribute identifier identifier identifier identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement comparison_operator attribute identifier identifier none block expression_statement call attribute attribute identifier identifier identifier argument_list identifier return_statement identifier | Decorator indicating that the decorated method could change the selection |
def commit(self):
self._assert_open()
if self._autocommit:
return
if not self._conn.tds72_transaction:
return
self._main_cursor._commit(cont=True, isolation_level=self._isolation_level) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list if_statement attribute identifier identifier block return_statement if_statement not_operator attribute attribute identifier identifier identifier block return_statement expression_statement call attribute attribute identifier identifier identifier argument_list keyword_argument identifier true keyword_argument identifier attribute identifier identifier | Commit transaction which is currently in progress. |
def chunks(seq, size):
return (seq[pos:pos + size] for pos in range(0, len(seq), size)) | module function_definition identifier parameters identifier identifier block return_statement generator_expression subscript identifier slice identifier binary_operator identifier identifier for_in_clause identifier call identifier argument_list integer call identifier argument_list identifier identifier | simple two-line alternative to `ubelt.chunks` |
def removeMainWindow(self, mainWindow):
logger.debug("removeMainWindow called")
self.windowActionGroup.removeAction(mainWindow.activateWindowAction)
self.repopulateAllWindowMenus()
self.mainWindows.remove(mainWindow) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Removes the mainWindow from the list of windows. Saves the settings |
def write_message(self, data, binary=False):
self.connection.write_message(data, binary) | module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier | Write a message to the client |
def ensure_no_set_overlap(train: Sequence[str], valid: Sequence[str], test: Sequence[str]) -> None:
logger.debug("Ensuring that the training, validation and test data sets have no overlap")
train_s = set(train)
valid_s = set(valid)
test_s = set(test)
if train_s & valid_s:
logger.warning("train and valid have overlapping items: {}".format(train_s & valid_s))
raise PersephoneException("train and valid have overlapping items: {}".format(train_s & valid_s))
if train_s & test_s:
logger.warning("train and test have overlapping items: {}".format(train_s & test_s))
raise PersephoneException("train and test have overlapping items: {}".format(train_s & test_s))
if valid_s & test_s:
logger.warning("valid and test have overlapping items: {}".format(valid_s & test_s))
raise PersephoneException("valid and test have overlapping items: {}".format(valid_s & test_s)) | module function_definition identifier parameters typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type generic_type identifier type_parameter type identifier type none block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier if_statement binary_operator identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier if_statement binary_operator identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier if_statement binary_operator identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list binary_operator identifier identifier | Ensures no test set data has creeped into the training set. |
def run_web(self, flask, host='127.0.0.1', port=5000, **options):
return flask.run(
host=flask.config.get('FLASK_HOST', host),
port=flask.config.get('FLASK_PORT', port),
debug=flask.config.get('DEBUG', False),
**options
) | module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier integer dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list keyword_argument identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier keyword_argument identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end identifier keyword_argument identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end false dictionary_splat identifier | Alias for Flask.run |
def normalize_slice(length, index):
"Fill in the Nones in a slice."
is_int = False
if isinstance(index, int):
is_int = True
index = slice(index, index+1)
if index.start is None:
index = slice(0, index.stop, index.step)
if index.stop is None:
index = slice(index.start, length, index.step)
if index.start < -1:
index = slice(length - index.start, index.stop, index.step)
if index.stop < -1:
index = slice(index.start, length - index.stop, index.step)
if index.step is not None:
raise NotImplementedError("You can't use steps with slicing yet")
if is_int:
if index.start < 0 or index.start > length:
raise IndexError("index out of bounds: %r for length %s" % (index, length))
return index | module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier false if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier true expression_statement assignment identifier call identifier argument_list identifier binary_operator identifier integer if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call identifier argument_list integer attribute identifier identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call identifier argument_list attribute identifier identifier identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier unary_operator integer block expression_statement assignment identifier call identifier argument_list binary_operator identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier unary_operator integer block expression_statement assignment identifier call identifier argument_list attribute identifier identifier binary_operator identifier attribute identifier identifier attribute identifier identifier if_statement comparison_operator attribute identifier identifier none block raise_statement call identifier argument_list string string_start string_content string_end if_statement identifier block if_statement boolean_operator comparison_operator attribute identifier identifier integer comparison_operator attribute identifier identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier return_statement identifier | Fill in the Nones in a slice. |
def mk_dir(self) :
if not os.path.exists(self.abs) :
os.makedirs(self.abs) | module function_definition identifier parameters identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list attribute identifier identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier | If this FSNode doesn't currently exist, then make a directory with this name. |
def check_directory_paths(self, *args):
for path in enumerate(args):
path = path[1]
if path is not None:
try:
self.check_directory_path(path)
except OSError as ex:
logger.warn(ex)
raise
return args | module function_definition identifier parameters identifier list_splat_pattern identifier block for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier subscript identifier integer if_statement comparison_operator identifier none block try_statement block expression_statement call attribute identifier identifier argument_list identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier raise_statement return_statement identifier | Ensure all arguments correspond to directories |
def _parse(root):
if root.tag == "nil-classes":
return []
elif root.get("type") == "array":
return [_parse(child) for child in root]
d = {}
for child in root:
type = child.get("type") or "string"
if child.get("nil"):
value = None
elif type == "boolean":
value = True if child.text.lower() == "true" else False
elif type == "dateTime":
value = iso8601.parse_date(child.text)
elif type == "decimal":
value = decimal.Decimal(child.text)
elif type == "integer":
value = int(child.text)
else:
value = child.text
d[child.tag] = value
return d | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block return_statement list elif_clause comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end block return_statement list_comprehension call identifier argument_list identifier for_in_clause identifier identifier expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier boolean_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier none elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier conditional_expression true comparison_operator call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end false elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list attribute identifier identifier else_clause block expression_statement assignment identifier attribute identifier identifier expression_statement assignment subscript identifier attribute identifier identifier identifier return_statement identifier | Recursively convert an Element into python data types |
def validate(self, obj):
if self.path:
for i in self.path:
obj = obj[i]
obj = obj[self.field]
raise NotImplementedError('Validation is not implemented yet') | module function_definition identifier parameters identifier identifier block if_statement attribute identifier identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier subscript identifier identifier expression_statement assignment identifier subscript identifier attribute identifier identifier raise_statement call identifier argument_list string string_start string_content string_end | check if obj has this api param |
def _parseSegments(self, data, elfHeader):
offset = elfHeader.header.e_phoff
segments = []
for i in range(elfHeader.header.e_phnum):
phdr = self.__classes.PHDR.from_buffer(data, offset)
segment_bytes = (c_ubyte * phdr.p_filesz).from_buffer(data, phdr.p_offset)
phdrData = PhdrData(header=phdr, raw=segment_bytes, bytes=bytearray(segment_bytes), type=PT[phdr.p_type], vaddr=phdr.p_vaddr, offset=phdr.p_offset)
segments.append(phdrData)
offset += elfHeader.header.e_phentsize
return segments | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier list for_statement identifier call identifier argument_list attribute attribute identifier identifier identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier expression_statement assignment identifier call attribute parenthesized_expression binary_operator identifier attribute identifier identifier identifier argument_list identifier attribute identifier identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier call identifier argument_list identifier keyword_argument identifier subscript identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement augmented_assignment identifier attribute attribute identifier identifier identifier return_statement identifier | Return a list of segments |
def np_lst_sq_xval(vecMdl, aryFuncChnk, aryIdxTrn, aryIdxTst):
varNumXval = aryIdxTrn.shape[-1]
varNumVoxChnk = aryFuncChnk.shape[-1]
aryResXval = np.empty((varNumVoxChnk,
varNumXval),
dtype=np.float32)
for idxXval in range(varNumXval):
vecMdlTrn = vecMdl[aryIdxTrn[:, idxXval], :]
vecMdlTst = vecMdl[aryIdxTst[:, idxXval], :]
aryFuncChnkTrn = aryFuncChnk[
aryIdxTrn[:, idxXval], :]
aryFuncChnkTst = aryFuncChnk[
aryIdxTst[:, idxXval], :]
vecTmpPe = np.linalg.lstsq(vecMdlTrn,
aryFuncChnkTrn,
rcond=-1)[0]
aryMdlPrdTc = np.dot(vecMdlTst, vecTmpPe)
aryResXval[:, idxXval] = np.sum(
(np.subtract(aryFuncChnkTst,
aryMdlPrdTc))**2, axis=0)
return aryResXval | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier unary_operator integer expression_statement assignment identifier subscript attribute identifier identifier unary_operator integer expression_statement assignment identifier call attribute identifier identifier argument_list tuple identifier identifier keyword_argument identifier attribute identifier identifier for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier subscript identifier subscript identifier slice identifier slice expression_statement assignment identifier subscript identifier subscript identifier slice identifier slice expression_statement assignment identifier subscript identifier subscript identifier slice identifier slice expression_statement assignment identifier subscript identifier subscript identifier slice identifier slice expression_statement assignment identifier subscript call attribute attribute identifier identifier identifier argument_list identifier identifier keyword_argument identifier unary_operator integer integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier expression_statement assignment subscript identifier slice identifier call attribute identifier identifier argument_list binary_operator parenthesized_expression call attribute identifier identifier argument_list identifier identifier integer keyword_argument identifier integer return_statement identifier | Least squares fitting in numpy with cross-validation. |
def spherical(coordinates):
c = coordinates
r = N.linalg.norm(c,axis=0)
theta = N.arccos(c[2]/r)
phi = N.arctan2(c[1],c[0])
return N.column_stack((r,theta,phi)) | module function_definition identifier parameters identifier block expression_statement assignment identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier keyword_argument identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator subscript identifier integer identifier expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier integer subscript identifier integer return_statement call attribute identifier identifier argument_list tuple identifier identifier identifier | No error is propagated |
def _cfactory(attr, func, argtypes, restype, errcheck=None):
meth = getattr(attr, func)
meth.argtypes = argtypes
meth.restype = restype
if errcheck:
meth.errcheck = errcheck | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none block expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier identifier if_statement identifier block expression_statement assignment attribute identifier identifier identifier | Factory to create a ctypes function and automatically manage errors. |
def delete_index_files(self):
self.clear_cache()
db_path = self.db.local_db_path()
if exists(db_path):
remove(db_path) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list if_statement call identifier argument_list identifier block expression_statement call identifier argument_list identifier | Delete all data aside from source GTF and FASTA files |
def store(bank, key, data):
redis_server = _get_redis_server()
redis_pipe = redis_server.pipeline()
redis_key = _get_key_redis_key(bank, key)
redis_bank_keys = _get_bank_keys_redis_key(bank)
try:
_build_bank_hier(bank, redis_pipe)
value = __context__['serial'].dumps(data)
redis_pipe.set(redis_key, value)
log.debug('Setting the value for %s under %s (%s)', key, bank, redis_key)
redis_pipe.sadd(redis_bank_keys, key)
log.debug('Adding %s to %s', key, redis_bank_keys)
redis_pipe.execute()
except (RedisConnectionError, RedisResponseError) as rerr:
mesg = 'Cannot set the Redis cache key {rkey}: {rerr}'.format(rkey=redis_key,
rerr=rerr)
log.error(mesg)
raise SaltCacheError(mesg) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier call identifier argument_list identifier try_statement block expression_statement call identifier argument_list identifier identifier expression_statement assignment identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier expression_statement call attribute identifier identifier argument_list except_clause as_pattern tuple identifier identifier as_pattern_target identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list identifier raise_statement call identifier argument_list identifier | Store the data in a Redis key. |
def force_vertical_padding_after(
self, index: int, padding: Union[int, float]) -> None:
self.vertical_padding[index] = padding | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type generic_type identifier type_parameter type identifier type identifier type none block expression_statement assignment subscript attribute identifier identifier identifier identifier | Change the padding after the given row. |
def export_batch(self):
batch = self.batch_cls(
model=self.model, history_model=self.history_model, using=self.using
)
if batch.items:
try:
json_file = self.json_file_cls(batch=batch, path=self.path)
json_file.write()
except JSONDumpFileError as e:
raise TransactionExporterError(e)
batch.close()
return batch
return None | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier if_statement attribute identifier identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block raise_statement call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list return_statement identifier return_statement none | Returns a batch instance after exporting a batch of txs. |
def _get_video_info(self):
if not hasattr(self, '_info_cache'):
encoding_backend = get_backend()
try:
path = os.path.abspath(self.path)
except AttributeError:
path = os.path.abspath(self.name)
self._info_cache = encoding_backend.get_media_info(path)
return self._info_cache | module function_definition identifier parameters identifier block if_statement not_operator call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier except_clause identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier return_statement attribute identifier identifier | Returns basic information about the video as dictionary. |
def journey_options(origin: str,
destination: str,
via: t.Optional[str]=None,
before: t.Optional[int]=None,
after: t.Optional[int]=None,
time: t.Optional[datetime]=None,
hsl: t.Optional[bool]=None,
year_card: t.Optional[bool]=None) -> (
snug.Query[t.List[Journey]]):
return snug.GET('treinplanner', params={
'fromStation': origin,
'toStation': destination,
'viaStation': via,
'previousAdvices': before,
'nextAdvices': after,
'dateTime': time,
'hslAllowed': hsl,
'yearCard': year_card,
}) | module function_definition identifier parameters typed_parameter identifier type identifier typed_parameter identifier type identifier typed_default_parameter identifier type subscript attribute identifier identifier identifier none typed_default_parameter identifier type subscript attribute identifier identifier identifier none typed_default_parameter identifier type subscript attribute identifier identifier identifier none typed_default_parameter identifier type subscript attribute identifier identifier identifier none typed_default_parameter identifier type subscript attribute identifier identifier identifier none typed_default_parameter identifier type subscript attribute identifier identifier identifier none type parenthesized_expression subscript attribute identifier identifier subscript attribute identifier identifier identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier | journey recommendations from an origin to a destination station |
def component_mul(vec1, vec2):
new_vec = Vector2()
new_vec.X = vec1.X * vec2.X
new_vec.Y = vec1.Y * vec2.Y
return new_vec | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier return_statement identifier | Multiply the components of the vectors and return the result. |
def setKeyboardTransformAbsolute(self, eTrackingOrigin):
fn = self.function_table.setKeyboardTransformAbsolute
pmatTrackingOriginToKeyboardTransform = HmdMatrix34_t()
fn(eTrackingOrigin, byref(pmatTrackingOriginToKeyboardTransform))
return pmatTrackingOriginToKeyboardTransform | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier call identifier argument_list expression_statement call identifier argument_list identifier call identifier argument_list identifier return_statement identifier | Set the position of the keyboard in world space |
def runGetIndividual(self, id_):
compoundId = datamodel.BiosampleCompoundId.parse(id_)
dataset = self.getDataRepository().getDataset(compoundId.dataset_id)
individual = dataset.getIndividual(id_)
return self.runGetRequest(individual) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier | Runs a getIndividual request for the specified ID. |
def close(self):
self.stop_sync()
[c.io.close() for c in self._controllers if c.io is not None] | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement list_comprehension call attribute attribute identifier identifier identifier argument_list for_in_clause identifier attribute identifier identifier if_clause comparison_operator attribute identifier identifier none | Cleans the robot by stopping synchronization and all controllers. |
def process(self, metric):
if self._match_metric(metric):
self.metrics.append(metric)
if self.should_flush():
self._send() | module function_definition identifier parameters identifier identifier block if_statement call attribute identifier identifier argument_list identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier if_statement call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list | Queue a metric. Flushing queue if batch size reached |
def _check_node(self, obj):
if not issubclass(type(obj), self.definition['node_class']):
raise ValueError("Expected node of class " + self.definition['node_class'].__name__)
if not hasattr(obj, 'id'):
raise ValueError("Can't perform operation on unsaved node " + repr(obj)) | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list call identifier argument_list identifier subscript attribute identifier identifier string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end attribute subscript attribute identifier identifier string string_start string_content string_end identifier if_statement not_operator call identifier argument_list identifier string string_start string_content string_end block raise_statement call identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | check for valid node i.e correct class and is saved |
def fetch_coords(self, query):
q = query.add_query_parameter(req='coord')
return self._parse_messages(self.get_query(q).content) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier string string_start string_content string_end return_statement call attribute identifier identifier argument_list attribute call attribute identifier identifier argument_list identifier identifier | Pull down coordinate data from the endpoint. |
def init_process(self):
for item in Device.objects.filter(protocol__daq_daemon=1, active=1, id__in=self.device_ids):
try:
tmp_device = item.get_device_instance()
if tmp_device is not None:
self.devices[item.pk] = tmp_device
self.dt_set = min(self.dt_set, item.polling_interval)
self.dt_query_data = min(self.dt_query_data, item.polling_interval)
except:
var = traceback.format_exc()
logger.error("exception while initialisation of DAQ Process for Device %d %s %s" % (
item.pk, linesep, var))
return True | module function_definition identifier parameters identifier block for_statement identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier integer keyword_argument identifier integer keyword_argument identifier attribute identifier identifier block try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier none block expression_statement assignment subscript attribute identifier identifier attribute identifier identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier except_clause block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end tuple attribute identifier identifier identifier identifier return_statement true | init a standard daq process for multiple devices |
def parse_at_root(
self,
root,
state
):
parsed_dict = self._dictionary.parse_at_root(root, state)
return self._converter.from_dict(parsed_dict) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier identifier return_statement call attribute attribute identifier identifier identifier argument_list identifier | Parse the root XML element as an aggregate. |
def _expand_disk(disk):
ret = {}
ret.update(disk.__dict__)
zone = ret['extra']['zone']
ret['extra']['zone'] = {}
ret['extra']['zone'].update(zone.__dict__)
return ret | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary expression_statement call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier subscript subscript identifier string string_start string_content string_end string string_start string_content string_end expression_statement assignment subscript subscript identifier string string_start string_content string_end string string_start string_content string_end dictionary expression_statement call attribute subscript subscript identifier string string_start string_content string_end string string_start string_content string_end identifier argument_list attribute identifier identifier return_statement identifier | Convert the libcloud Volume object into something more serializable. |
def _dumps(obj, cls=pyjson.JSONEncoder):
class WithBytes(cls):
def default(self, o):
if isinstance(o, bytes):
warnings.warn(
"Eliot will soon stop supporting encoding bytes in JSON"
" on Python 3", DeprecationWarning
)
return o.decode("utf-8")
return cls.default(self, o)
return pyjson.dumps(obj, cls=WithBytes).encode("utf-8") | module function_definition identifier parameters identifier default_parameter identifier attribute identifier identifier block class_definition identifier argument_list identifier block function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end identifier return_statement call attribute identifier identifier argument_list string string_start string_content string_end return_statement call attribute identifier identifier argument_list identifier identifier return_statement call attribute call attribute identifier identifier argument_list identifier keyword_argument identifier identifier identifier argument_list string string_start string_content string_end | Encode to bytes, and presume bytes in inputs are UTF-8 encoded strings. |
def store_usage_stat(self, venv_data, cache):
with open(self.stat_file_path, 'at') as f:
self._write_venv_usage(f, venv_data) | module function_definition identifier parameters identifier identifier identifier block with_statement with_clause with_item as_pattern call identifier argument_list attribute identifier identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier identifier | Log an usage record for venv_data. |
def open(self, path, filename=None):
scheme, key = self.getkey(path, filename=filename)
return BotoReadFileHandle(scheme, key) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier return_statement call identifier argument_list identifier identifier | Open a file specified by path. |
def bookmarks_index_changed(self):
index = self.bookmarks_list.currentIndex()
if index >= 0:
self.tool.reset()
rectangle = self.bookmarks_list.itemData(index)
self.tool.set_rectangle(rectangle)
self.canvas.setExtent(rectangle)
self.ok_button.setEnabled(True)
else:
self.ok_button.setDisabled(True) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list if_statement comparison_operator identifier integer block expression_statement call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list true else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list true | Update the UI when the bookmarks combobox has changed. |
def append_static_code(filename, outf):
basepath = os.path.dirname(os.path.realpath(__file__))
filepath = os.path.join(basepath, 'swift/%s' % filename)
print("Appending content of %s" % filename)
with open(filepath) as inf:
for line in inf:
outf.write(line) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier binary_operator string string_start string_content string_end identifier expression_statement call identifier argument_list binary_operator string string_start string_content string_end identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier as_pattern_target identifier block for_statement identifier identifier block expression_statement call attribute identifier identifier argument_list identifier | Open and copy static code from specified file |
def run_cmd_unit(self, sentry_unit, cmd):
output, code = sentry_unit.run(cmd)
if code == 0:
self.log.debug('{} `{}` command returned {} '
'(OK)'.format(sentry_unit.info['unit_name'],
cmd, code))
else:
msg = ('{} `{}` command returned {} '
'{}'.format(sentry_unit.info['unit_name'],
cmd, code, output))
amulet.raise_status(amulet.FAIL, msg=msg)
return str(output), code | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier integer block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list subscript attribute identifier identifier string string_start string_content string_end identifier identifier else_clause block expression_statement assignment identifier parenthesized_expression call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list subscript attribute identifier identifier string string_start string_content string_end identifier identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier return_statement expression_list call identifier argument_list identifier identifier | Run a command on a unit, return the output and exit code. |
def posted_data_dict(self):
if not self.query:
return None
from django.http import QueryDict
roughdecode = dict(item.split('=', 1) for item in self.query.split('&'))
encoding = roughdecode.get('charset', None)
if encoding is None:
encoding = DEFAULT_ENCODING
query = self.query.encode('ascii')
data = QueryDict(query, encoding=encoding)
return data.dict() | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement none import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier call identifier generator_expression call attribute identifier identifier argument_list string string_start string_content string_end integer for_in_clause identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none if_statement comparison_operator identifier none block expression_statement assignment identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier return_statement call attribute identifier identifier argument_list | All the data that PayPal posted to us, as a correctly parsed dictionary of values. |
def stop(self):
self._logger.debug("The Slack RTMClient is shutting down.")
self._stopped = True
self._close_websocket() | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment attribute identifier identifier true expression_statement call attribute identifier identifier argument_list | Closes the websocket connection and ensures it won't reconnect. |
def rotate(self, log):
self.write(log, rotate=True)
self.write({}) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier true expression_statement call attribute identifier identifier argument_list dictionary | Move the current log to a new file with timestamp and create a new empty log file. |
def rule_low_registers(self, arg):
r_num = self.check_register(arg)
if r_num > 7:
raise iarm.exceptions.RuleError(
"Register {} is not a low register".format(arg)) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier integer block raise_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier | Low registers are R0 - R7 |
def progress_updater(size, total):
current_task.update_state(
state=state('PROGRESS'),
meta=dict(size=size, total=total)
) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list keyword_argument identifier call identifier argument_list string string_start string_content string_end keyword_argument identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier | Progress reporter for checksum verification. |
def _getitem(self, key):
key = int(key)
if key < 0:
key %= self._len
if len(self._pages) == 1 and 0 < key < self._len:
index = self._pages[0].index
return self.parent.pages._getitem(index + key)
return self._pages[key] | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier integer block expression_statement augmented_assignment identifier attribute identifier identifier if_statement boolean_operator comparison_operator call identifier argument_list attribute identifier identifier integer comparison_operator integer identifier attribute identifier identifier block expression_statement assignment identifier attribute subscript attribute identifier identifier integer identifier return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list binary_operator identifier identifier return_statement subscript attribute identifier identifier identifier | Return specified page of series from cache or file. |
def _add_post_data(self, request: Request):
if self._item_session.url_record.post_data:
data = wpull.string.to_bytes(self._item_session.url_record.post_data)
else:
data = wpull.string.to_bytes(
self._processor.fetch_params.post_data
)
request.method = 'POST'
request.fields['Content-Type'] = 'application/x-www-form-urlencoded'
request.fields['Content-Length'] = str(len(data))
_logger.debug('Posting with data {0}.', data)
if not request.body:
request.body = Body(io.BytesIO())
with wpull.util.reset_file_offset(request.body):
request.body.write(data) | module function_definition identifier parameters identifier typed_parameter identifier type identifier block if_statement attribute attribute attribute identifier identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute attribute identifier identifier identifier identifier else_clause block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute attribute identifier identifier identifier identifier expression_statement assignment attribute identifier identifier string string_start string_content string_end expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_end expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end call identifier argument_list call identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier if_statement not_operator attribute identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list call attribute identifier identifier argument_list with_statement with_clause with_item call attribute attribute identifier identifier identifier argument_list attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier | Add data to the payload. |
def create_zpaq(archive, compression, cmd, verbosity, interactive, filenames):
cmdlist = [cmd, 'a', archive]
cmdlist.extend(filenames)
cmdlist.extend(['-method', '4'])
return cmdlist | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier list identifier string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end return_statement identifier | Create a ZPAQ archive. |
def std(self, bessel_correction=True):
if bessel_correction:
n = self.n
bc = n / (n - 1)
else:
bc = 1
return np.sqrt(np.average((self.bin_centers - self.mean) ** 2, weights=self.histogram)) * bc | module function_definition identifier parameters identifier default_parameter identifier true block if_statement identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier binary_operator identifier parenthesized_expression binary_operator identifier integer else_clause block expression_statement assignment identifier integer return_statement binary_operator call attribute identifier identifier argument_list call attribute identifier identifier argument_list binary_operator parenthesized_expression binary_operator attribute identifier identifier attribute identifier identifier integer keyword_argument identifier attribute identifier identifier identifier | Estimates std of underlying data, assuming each datapoint was exactly in the center of its bin. |
def io_surface(timestep, time, fid, fld):
fid.write("{} {}".format(timestep, time))
fid.writelines(["%10.2e" % item for item in fld[:]])
fid.writelines(["\n"]) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list list_comprehension binary_operator string string_start string_content string_end identifier for_in_clause identifier subscript identifier slice expression_statement call attribute identifier identifier argument_list list string string_start string_content escape_sequence string_end | Output for surface files |
def _work(self):
server = wsgi.Server(
name=self._AGENT_BINARY,
num_threads=CONF.AGENT.worker_count)
server.start(
application=_MetadataProxyHandler(),
port=CONF.bind_port,
host=CONF.bind_host)
server.wait() | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list keyword_argument identifier call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list | Start the neutron-hnv-metadata-proxy agent. |
def ancestors(self, cl=None, noduplicates=True):
if not cl:
cl = self
if cl.parents():
bag = []
for x in cl.parents():
if x.uri != cl.uri:
bag += [x] + self.ancestors(x, noduplicates)
else:
bag += [x]
if noduplicates:
return remove_duplicates(bag)
else:
return bag
else:
return [] | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier true block if_statement not_operator identifier block expression_statement assignment identifier identifier if_statement call attribute identifier identifier argument_list block expression_statement assignment identifier list for_statement identifier call attribute identifier identifier argument_list block if_statement comparison_operator attribute identifier identifier attribute identifier identifier block expression_statement augmented_assignment identifier binary_operator list identifier call attribute identifier identifier argument_list identifier identifier else_clause block expression_statement augmented_assignment identifier list identifier if_statement identifier block return_statement call identifier argument_list identifier else_clause block return_statement identifier else_clause block return_statement list | returns all ancestors in the taxonomy |
def device_at_index(self, index):
if index >= len(self.__xid_cons):
raise ValueError("Invalid device index")
return self.__xid_cons[index] | module function_definition identifier parameters identifier identifier block if_statement comparison_operator identifier call identifier argument_list attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end return_statement subscript attribute identifier identifier identifier | Returns the device at the specified index |
def _aix_loadavg():
uptime = __salt__['cmd.run']('uptime')
ldavg = uptime.split('load average')
load_avg = ldavg[1].split()
return {'1-min': load_avg[1].strip(','),
'5-min': load_avg[2].strip(','),
'15-min': load_avg[3]} | module function_definition identifier parameters block expression_statement assignment identifier call subscript identifier string string_start string_content string_end argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute subscript identifier integer identifier argument_list return_statement dictionary pair string string_start string_content string_end call attribute subscript identifier integer identifier argument_list string string_start string_content string_end pair string string_start string_content string_end call attribute subscript identifier integer identifier argument_list string string_start string_content string_end pair string string_start string_content string_end subscript identifier integer | Return the load average on AIX |
def append(self, item):
print(item)
super(MyList, self).append(item) | module function_definition identifier parameters identifier identifier block expression_statement call identifier argument_list identifier expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list identifier | append item and print it to stdout |
def dict2obj(d):
if isinstance(d, (list, tuple)):
d = [dict2obj(x) for x in d]
if not isinstance(d, dict):
return d
class ObjectFromDict(object):
pass
o = ObjectFromDict()
for k in d:
o.__dict__[k] = dict2obj(d[k])
return o | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier tuple identifier identifier block expression_statement assignment identifier list_comprehension call identifier argument_list identifier for_in_clause identifier identifier if_statement not_operator call identifier argument_list identifier identifier block return_statement identifier class_definition identifier argument_list identifier block pass_statement expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier call identifier argument_list subscript identifier identifier return_statement identifier | A helper function which convert a dict to an object. |
def split_focus(self):
focus = self.lines[self.focus]
pos = focus.edit_pos
edit = urwid.Edit("", focus.edit_text[pos:], allow_tab=True)
edit.original_text = ""
focus.set_edit_text(focus.edit_text[:pos])
edit.set_edit_pos(0)
self.lines.insert(self.focus + 1, edit) | module function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute identifier identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_end subscript attribute identifier identifier slice identifier keyword_argument identifier true expression_statement assignment attribute identifier identifier string string_start string_end expression_statement call attribute identifier identifier argument_list subscript attribute identifier identifier slice identifier expression_statement call attribute identifier identifier argument_list integer expression_statement call attribute attribute identifier identifier identifier argument_list binary_operator attribute identifier identifier integer identifier | Divide the focus edit widget at the cursor location. |
def _handle_ctrl_c(self, *args):
if self.anybar: self.anybar.change("exclamation")
if self._stop:
print("\nForced shutdown...")
raise SystemExit
if not self._stop:
hline = 42 * '='
print(
'\n' + hline + "\nGot CTRL+C, waiting for current cycle...\n"
"Press CTRL+C again if you're in hurry!\n" + hline
)
self._stop = True | module function_definition identifier parameters identifier list_splat_pattern identifier block if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end if_statement attribute identifier identifier block expression_statement call identifier argument_list string string_start string_content escape_sequence string_end raise_statement identifier if_statement not_operator attribute identifier identifier block expression_statement assignment identifier binary_operator integer string string_start string_content string_end expression_statement call identifier argument_list binary_operator binary_operator binary_operator string string_start string_content escape_sequence string_end identifier concatenated_string string string_start string_content escape_sequence escape_sequence string_end string string_start string_content escape_sequence string_end identifier expression_statement assignment attribute identifier identifier true | Handle the keyboard interrupts. |
def _map_tril_1d_on_2d(indices, dims):
N = (dims * dims - dims) / 2
m = np.ceil(np.sqrt(2 * N))
c = m - np.round(np.sqrt(2 * (N - indices))) - 1
r = np.mod(indices + (c + 1) * (c + 2) / 2 - 1, m) + 1
return np.array([r, c], dtype=np.int64) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator parenthesized_expression binary_operator binary_operator identifier identifier identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list binary_operator integer identifier expression_statement assignment identifier binary_operator binary_operator identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list binary_operator integer parenthesized_expression binary_operator identifier identifier integer expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list binary_operator binary_operator identifier binary_operator binary_operator parenthesized_expression binary_operator identifier integer parenthesized_expression binary_operator identifier integer integer integer identifier integer return_statement call attribute identifier identifier argument_list list identifier identifier keyword_argument identifier attribute identifier identifier | Map 1d indices on lower triangular matrix in 2d. |
def wait(self):
logging.info("waiting for {} jobs to complete".format(len(self.submissions)))
while not self.shutdown:
time.sleep(1) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call identifier argument_list attribute identifier identifier while_statement not_operator attribute identifier identifier block expression_statement call attribute identifier identifier argument_list integer | Waits for all submitted jobs to complete. |
def out_of_date(self):
try:
latest_remote_sha = self.pr_commits(self.pull_request.refresh(True))[-1].sha
print("Latest remote sha: {}".format(latest_remote_sha))
try:
print("Ratelimit remaining: {}".format(self.github.ratelimit_remaining))
except Exception:
print("Failed to look up ratelimit remaining")
return self.last_sha != latest_remote_sha
except IndexError:
return False | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier attribute subscript call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list true unary_operator integer identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier try_statement block expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute attribute identifier identifier identifier except_clause identifier block expression_statement call identifier argument_list string string_start string_content string_end return_statement comparison_operator attribute identifier identifier identifier except_clause identifier block return_statement false | Check if our local latest sha matches the remote latest sha |
def list_build_records_for_set(id=None, name=None, page_size=200, page_index=0, sort="", q=""):
content = list_build_records_for_set_raw(id, name, page_size, page_index, sort, q)
if content:
return utils.format_json_list(content) | module function_definition identifier parameters default_parameter identifier none default_parameter identifier none default_parameter identifier integer default_parameter identifier integer default_parameter identifier string string_start string_end default_parameter identifier string string_start string_end block expression_statement assignment identifier call identifier argument_list identifier identifier identifier identifier identifier identifier if_statement identifier block return_statement call attribute identifier identifier argument_list identifier | List all build records for a BuildConfigurationSet |
def delete(sql, *args, **kwargs):
assert "delete" in sql.lower(), 'This function requires a delete statement, provided: {}'.format(sql)
CoyoteDb.execute_and_commit(sql, *args, **kwargs) | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block assert_statement comparison_operator string string_start string_content string_end call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier list_splat identifier dictionary_splat identifier | Deletes and commits with an insert sql statement |
def action(self):
user = self.args['--user'] if self.args['--user'] else None
reset = True if self.args['--reset'] else False
if self.args['generate']:
generate_network(user, reset)
elif self.args['publish']:
publish_network(user, reset) | module function_definition identifier parameters identifier block expression_statement assignment identifier conditional_expression subscript attribute identifier identifier string string_start string_content string_end subscript attribute identifier identifier string string_start string_content string_end none expression_statement assignment identifier conditional_expression true subscript attribute identifier identifier string string_start string_content string_end false if_statement subscript attribute identifier identifier string string_start string_content string_end block expression_statement call identifier argument_list identifier identifier elif_clause subscript attribute identifier identifier string string_start string_content string_end block expression_statement call identifier argument_list identifier identifier | Invoke functions according to the supplied flags |
def tick(self):
instant_rate = self.count / float(self.tick_interval_s)
self.count = 0
if self.initialized:
self.rate += (self.alpha * (instant_rate - self.rate))
else:
self.rate = instant_rate
self.initialized = True | module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator attribute identifier identifier call identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier integer if_statement attribute identifier identifier block expression_statement augmented_assignment attribute identifier identifier parenthesized_expression binary_operator attribute identifier identifier parenthesized_expression binary_operator identifier attribute identifier identifier else_clause block expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier true | Mark the passage of time and decay the current rate accordingly. |
def header_length(bytearray):
groups_of_3, leftover = divmod(len(bytearray), 3)
n = groups_of_3 * 4
if leftover:
n += 4
return n | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list call identifier argument_list identifier integer expression_statement assignment identifier binary_operator identifier integer if_statement identifier block expression_statement augmented_assignment identifier integer return_statement identifier | Return the length of s when it is encoded with base64. |
def _estimate_paired_innerdist(fastq_file, pair_file, ref_file, out_base,
out_dir, data):
mean, stdev = _bowtie_for_innerdist("100000", fastq_file, pair_file, ref_file,
out_base, out_dir, data, True)
if not mean or not stdev:
mean, stdev = _bowtie_for_innerdist("1", fastq_file, pair_file, ref_file,
out_base, out_dir, data, True)
if not mean or not stdev:
mean, stdev = 200, 50
return mean, stdev | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list string string_start string_content string_end identifier identifier identifier identifier identifier identifier true if_statement boolean_operator not_operator identifier not_operator identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list string string_start string_content string_end identifier identifier identifier identifier identifier identifier true if_statement boolean_operator not_operator identifier not_operator identifier block expression_statement assignment pattern_list identifier identifier expression_list integer integer return_statement expression_list identifier identifier | Use Bowtie to estimate the inner distance of paired reads. |
def _cutoff(self, coeffs, vscale):
bnd = self._threshold(vscale)
inds = np.nonzero(abs(coeffs) >= bnd)
if len(inds[0]):
N = inds[0][-1]
else:
N = 0
return N+1 | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list comparison_operator call identifier argument_list identifier identifier if_statement call identifier argument_list subscript identifier integer block expression_statement assignment identifier subscript subscript identifier integer unary_operator integer else_clause block expression_statement assignment identifier integer return_statement binary_operator identifier integer | Compute cutoff index after which the coefficients are deemed negligible. |
def median(self, name, **kwargs):
data = self.get(name,**kwargs)
return np.percentile(data,[50]) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier dictionary_splat identifier return_statement call attribute identifier identifier argument_list identifier list integer | Median of the distribution. |
def _guess_caller():
import inspect
global _caller_path
caller = inspect.stack()[1]
caller_module = inspect.getmodule(caller[0])
if hasattr(caller_module, '__file__'):
_caller_path = os.path.abspath(caller_module.__file__)
return _caller_path | module function_definition identifier parameters block import_statement dotted_name identifier global_statement identifier expression_statement assignment identifier subscript call attribute identifier identifier argument_list integer expression_statement assignment identifier call attribute identifier identifier argument_list subscript identifier integer if_statement call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement identifier | try to guess which module import app.py |
def to_data(s):
if s.startswith('GPSTime'):
s = 'Gps' + s[3:]
if '_' in s:
return "".join([i.capitalize() for i in s.split("_")])
return s | module function_definition identifier parameters identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier binary_operator string string_start string_content string_end subscript identifier slice integer if_statement comparison_operator string string_start string_content string_end identifier block return_statement call attribute string string_start string_end identifier argument_list list_comprehension call attribute identifier identifier argument_list for_in_clause identifier call attribute identifier identifier argument_list string string_start string_content string_end return_statement identifier | Format a data variable name. |
def generate_security_data(self):
timestamp = int(time.time())
security_dict = {
'content_type': str(self.target_object._meta),
'object_pk': str(self.target_object._get_pk_val()),
'timestamp': str(timestamp),
'security_hash': self.initial_security_hash(timestamp),
}
return security_dict | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier dictionary pair string string_start string_content string_end call identifier argument_list attribute attribute identifier identifier identifier pair string string_start string_content string_end call identifier argument_list call attribute attribute identifier identifier identifier argument_list pair string string_start string_content string_end call identifier argument_list identifier pair string string_start string_content string_end call attribute identifier identifier argument_list identifier return_statement identifier | Generate a dict of security data for "initial" data. |
def new_batch(self):
i = next(self.slicer)
return self.X_all[i], self.Y_all[i] | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier return_statement expression_list subscript attribute identifier identifier identifier subscript attribute identifier identifier identifier | Return a new batch of X and Y by taking a chunk of data from the complete X and Y |
def acit(rest):
"Look up an acronym"
word = rest.strip()
res = util.lookup_acronym(word)
if res is None:
return "Arg! I couldn't expand that..."
else:
return ' | '.join(res) | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier none block return_statement string string_start string_content string_end else_clause block return_statement call attribute string string_start string_content string_end identifier argument_list identifier | Look up an acronym |
def form_valid(self, form):
form.cleaned_data.pop('template', None)
self.request.session[EMAIL_VALIDATION_STR] = {'form_data': form.cleaned_data}
return HttpResponseRedirect(reverse('emailConfirmation')) | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end none expression_statement assignment subscript attribute attribute identifier identifier identifier identifier dictionary pair string string_start string_content string_end attribute identifier identifier return_statement call identifier argument_list call identifier argument_list string string_start string_content string_end | Pass form data to the confirmation view |
def logReload(options):
event_handler = Reload(options)
observer = Observer()
observer.schedule(event_handler, path='.', recursive=True)
observer.start()
try:
while True:
time.sleep(1)
except KeyboardInterrupt:
observer.stop()
pid = os.getpid()
chalk.eraser()
chalk.green('\nHendrix successfully closed.')
os.kill(pid, 15)
observer.join()
exit('\n') | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier true expression_statement call attribute identifier identifier argument_list try_statement block while_statement true block expression_statement call attribute identifier identifier argument_list integer except_clause identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement call attribute identifier identifier argument_list identifier integer expression_statement call attribute identifier identifier argument_list expression_statement call identifier argument_list string string_start string_content escape_sequence string_end | encompasses all the logic for reloading observer. |
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