code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def _chk_docunknown(args, exp):
unknown = []
for arg in args:
if arg[:2] == '--':
val = arg[2:]
if val not in exp:
unknown.append(arg)
elif arg[:1] == '-':
val = arg[1:]
if val not in exp:
... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement identifier identifier block if_statement comparison_operator subscript identifier slice integer string string_start string_content string_end block expression_statement assignment i... | Return any unknown args. |
def _copy_from(self, rhs):
self._manager = rhs._manager
self._rlist = type(rhs._rlist)(rhs._rlist)
self._region = rhs._region
self._ofs = rhs._ofs
self._size = rhs._size
for region in self._rlist:
region.increment_client_count()
if self._region is not ... | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call call identifier argument_list attribute identifier identifier argument_list at... | Copy all data from rhs into this instance, handles usage count |
def predict(self,param_dict):
encoder_dict = self._designmatrix_object.encoder
X, col_names = self._designmatrix_object.run_encoder(param_dict, encoder_dict)
Y_pred = self._compute_prediction(X)
return Y_pred | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list identifi... | predict new waveforms using multivar fit |
def _from_dict(cls, _dict):
args = {}
if 'nodes_visited' in _dict:
args['nodes_visited'] = [
DialogNodesVisited._from_dict(x)
for x in (_dict.get('nodes_visited'))
]
if 'log_messages' in _dict:
args['log_messages'] = [
... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content strin... | Initialize a MessageOutputDebug object from a json dictionary. |
def export_to_xml(self, block, xmlfile):
root = etree.Element("unknown_root", nsmap=XML_NAMESPACES)
tree = etree.ElementTree(root)
block.add_xml_to_node(root)
for aside in self.get_asides(block):
if aside.needs_serialization():
aside_node = etree.Element("unkn... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier identifier expression_statement assignment identifier call attri... | Export the block to XML, writing the XML to `xmlfile`. |
def install(python=PYTHON):
local(
"LIBRARY_PATH={library_path} CPATH={include_path} {python} "
"setup.py build".format(
library_path=LIBRARY_PATH,
include_path=INCLUDE_PATH,
python=python,
))
local("sudo {python} setup.py install".format(python=python... | module function_definition identifier parameters default_parameter identifier identifier block expression_statement call identifier argument_list call attribute concatenated_string string string_start string_content string_end string string_start string_content string_end identifier argument_list keyword_argument ident... | Install into site-packages |
def content_id(self) -> Optional[UnstructuredHeader]:
try:
return cast(UnstructuredHeader, self[b'content-id'][0])
except (KeyError, IndexError):
return None | module function_definition identifier parameters identifier type generic_type identifier type_parameter type identifier block try_statement block return_statement call identifier argument_list identifier subscript subscript identifier string string_start string_content string_end integer except_clause tuple identifier ... | The ``Content-Id`` header. |
def _get_host(name, array):
host = None
for temp in array.list_hosts():
if temp['name'] == name:
host = temp
break
return host | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier none for_statement identifier call attribute identifier identifier argument_list block if_statement comparison_operator subscript identifier string string_start string_content string_end identifier bl... | Private function to check host |
def _set_default_refdata():
global GRAPHTABLE, COMPTABLE, THERMTABLE, PRIMARY_AREA
try:
GRAPHTABLE = _refTable(os.path.join('mtab','*_tmg.fits'))
COMPTABLE = _refTable(os.path.join('mtab','*_tmc.fits'))
except IOError as e:
GRAPHTABLE = None
COMPTABLE = None
warnings... | module function_definition identifier parameters block global_statement identifier identifier identifier identifier try_statement block expression_statement assignment identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list string string_start string_content stri... | Default refdata set on import. |
def comma_separated_list(self, node, subnodes):
for item in subnodes:
position = (item.last_line, item.last_col)
first, last = find_next_comma(self.lcode, position)
if first:
node.op_pos.append(NodeWithPosition(last, first)) | module function_definition identifier parameters identifier identifier identifier block for_statement identifier identifier block expression_statement assignment identifier tuple attribute identifier identifier attribute identifier identifier expression_statement assignment pattern_list identifier identifier call ident... | Process comma separated list |
def _find_usage_environments(self):
environments = self.conn.describe_environments()
self.limits['Environments']._add_current_usage(
len(environments['Environments']),
aws_type='AWS::ElasticBeanstalk::Environment',
) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute subscript attribute identifier identifier string string_start string_content string_end identifier argu... | find usage for ElasticBeanstalk environments |
def solve_tuple(expr, vars):
result = tuple(solve(x, vars).value for x in expr.children)
return Result(result, ()) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier generator_expression attribute call identifier argument_list identifier identifier identifier for_in_clause identifier attribute identifier identifier return_statement call identifier ... | Build a tuple from subexpressions. |
def write(self, file):
render(
self.template,
file,
benchmarks=self.benchmarks,
hostname=socket.gethostname(),
) | module function_definition identifier parameters identifier identifier block expression_statement call identifier argument_list attribute identifier identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier call attribute identifier identifier argument_list | Write YAML campaign template to the given open file |
def im_messages_others(self, room_id, **kwargs):
return self.__call_api_get('im.messages.others', roomId=room_id, kwargs=kwargs) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier identifier | Retrieves the messages from any direct message in the server |
def DEFINE_integer(self, name, default, help, constant=False):
self.AddOption(
type_info.Integer(name=name, default=default, description=help),
constant=constant) | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier false block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identif... | A helper for defining integer options. |
def dicomdir_info(dirpath, *args, **kwargs):
dr = DicomReader(dirpath=dirpath, *args, **kwargs)
info = dr.dicomdirectory.get_stats_of_series_in_dir()
return info | module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier list_splat identifier dictionary_splat identifier expression_statement assig... | Get information about series in dir |
def setup_auth(**keys):
auth = tweepy.OAuthHandler(consumer_key=keys['consumer_key'], consumer_secret=keys['consumer_secret'])
auth.set_access_token(
key=keys.get('token', keys.get('key', keys.get('oauth_token'))),
secret=keys.get('secret', keys.get('oauth_secret'))
)
return auth | module function_definition identifier parameters dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier subscript identifier string string_start string_content string_end keyword_argument identifier subscript id... | Set up Tweepy authentication using passed args or config file settings. |
def list_slack():
try:
token = os.environ['SLACK_TOKEN']
slack = Slacker(token)
response = slack.channels.list()
channels = response.body['channels']
for channel in channels:
print(channel['id'], channel['name'])
print()
response = slack.users.list... | module function_definition identifier parameters block try_statement block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier expression_statement assignmen... | List channels & users in slack. |
def deprecated(function, instead):
if not isinstance(function, types.FunctionType):
return function
@wraps(function)
def wrap(*args, **kwargs):
warnings.warn("Deprecated, use %s instead" % instead,
PyGIDeprecationWarning)
return function(*args, **kwargs)
ret... | module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block return_statement identifier decorated_definition decorator call identifier argument_list identifier function_definition identifier paramet... | Mark a function deprecated so calling it issues a warning |
def estimateabundance(self):
logging.info('Estimating abundance of taxonomic groups')
for i in range(self.cpus):
threads = Thread(target=self.estimate, args=())
threads.setDaemon(True)
threads.start()
with progressbar(self.runmetadata.samples) as bar:
... | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end for_statement identifier call identifier argument_list attribute identifier identifier block expression_statement assignment identifier ... | Estimate the abundance of taxonomic groups |
def slicenet_params1_noam():
hparams = slicenet_params1()
hparams.learning_rate_decay_scheme = "noam"
hparams.learning_rate = 1.0
hparams.learning_rate_warmup_steps = 4000
hparams.initializer = "uniform_unit_scaling"
hparams.optimizer_adam_epsilon = 1e-9
hparams.optimizer_adam_beta1 = 0.9
hparams.optimi... | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier string string_start string_content string_end expression_statement assignment attribute identifier identifier float expression_s... | Version with Noam's decay scheme. |
def _decode(value):
if value.isdigit():
return int(value)
if isinstance(value, bytes):
return value.decode('utf-8')
else:
return value | module function_definition identifier parameters identifier block if_statement call attribute identifier identifier argument_list block return_statement call identifier argument_list identifier if_statement call identifier argument_list identifier identifier block return_statement call attribute identifier identifier a... | decode byte strings and convert to int where needed |
def rec(self):
try:
self._snapshot()
except Exception as e:
self.log("Timer error: ", e, type(e), lvl=error) | module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list string string_start... | Records a single snapshot |
def display_variogram_model(self):
fig = plt.figure()
ax = fig.add_subplot(111)
ax.plot(self.lags, self.semivariance, 'r*')
ax.plot(self.lags,
self.variogram_function(self.variogram_model_parameters,
self.lags), 'k-')
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list integer expression_statement call attribute identifier identifier ... | Displays variogram model with the actual binned data. |
def _rlfunc(rl,lz,pot):
thisvcirc= vcirc(pot,rl,use_physical=False)
return rl*thisvcirc-lz | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier keyword_argument identifier false return_statement binary_operator binary_operator identifier identifier identifier | Function that gives rvc-lz |
def image_channel_embeddings_bottom(x, model_hparams, vocab_size):
del vocab_size
inputs = tf.to_int32(x)
io_depth = model_hparams.num_channels
tshape = common_layers.shape_list(inputs)
hidden_size = model_hparams.hidden_size
target_embeddings = cia.get_channel_embeddings(
io_depth, inputs, hidden_siz... | module function_definition identifier parameters identifier identifier identifier block delete_statement identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier attribute identifier identifier expression_statement ass... | Bottom transformation for image targets. |
def update_value(self, key, value):
if key == "Status":
self._inhibited = value != "Enabled"
elif key == "Color temperature":
self._temperature = int(value.rstrip("K"), 10)
elif key == "Period":
self._period = value
elif key == "Brightness":
... | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment attribute identifier identifier comparison_operator identifier string string_start string_content string... | Parse key value pairs to update their values |
def register_lsp_server_settings(self, settings, language):
self.lsp_editor_settings[language] = settings
logger.debug('LSP server settings for {!s} are: {!r}'.format(
language, settings))
self.lsp_server_ready(language, self.lsp_editor_settings[language]) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier identifier expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end ide... | Register LSP server settings. |
def parse_children(parent):
components = []
for tag in parent.children:
matched = parse_tag(tag)
if matched:
components.append(matched)
elif hasattr(tag, 'contents'):
components += parse_children(tag)
return components | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement identifier block expression_statement call att... | Recursively parse child tags until match is found |
def _per_file_event_handler(self):
file_event_handler = PatternMatchingEventHandler()
file_event_handler.on_created = self._on_file_created
file_event_handler.on_modified = self._on_file_modified
file_event_handler.on_moved = self._on_file_moved
file_event_handler._patterns = [
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier ... | Create a Watchdog file event handler that does different things for every file |
def _convert_exception(e):
args = ('exception in ldap backend: {0}'.format(repr(e)), e)
if six.PY2:
six.reraise(LDAPError, args, sys.exc_info()[2])
else:
six.raise_from(LDAPError(*args), e) | module function_definition identifier parameters identifier block expression_statement assignment identifier tuple call attribute string string_start string_content string_end identifier argument_list call identifier argument_list identifier identifier if_statement attribute identifier identifier block expression_state... | Convert an ldap backend exception to an LDAPError and raise it. |
def instantiate_tasks(self):
self.tasks_instances = {}
for task_name, task_class in self.tasks_classes.items():
try:
self.tasks_instances[task_name] = task_class()
except Exception as ex:
if not self.configuration[Configuration.ALGORITHM][Configura... | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier dictionary for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block try_statement block expression_statement assignment ... | All loaded tasks are initialized. Depending on configuration fails in such instantiations may be silent |
def start(self):
self.is_collocated = bool(socket.gethostname() == self.config.slaveinput['cov_master_host'] and
self.topdir == self.config.slaveinput['cov_master_topdir'])
if not self.is_collocated:
master_topdir = self.config.slaveinput['cov_master_topdir'... | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list boolean_operator comparison_operator call attribute identifier identifier argument_list subscript attribute attribute identifier identifier identifier string st... | Determine what data file and suffix to contribute to and start coverage. |
def add_parameter(self, param_name, description=None, default=0, unit=None):
if description is None:
description = "Parameter called {}".format(param_name)
if unit is None:
unit = "-"
name_check = lambda x: x['name'] == param_name
name_check_list = list(filter(nam... | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier integer default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute string string_start strin... | Add a global parameter to the database that can be accessed by functions |
def getThirdPartyLibIncludeDirs(self, libs):
platformDefaults = True
if libs[0] == '--nodefaults':
platformDefaults = False
libs = libs[1:]
details = self.getThirdpartyLibs(libs, includePlatformDefaults=platformDefaults)
return details.getIncludeDirectories(self.getEngineRoot(), delimiter='\n') | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier true if_statement comparison_operator subscript identifier integer string string_start string_content string_end block expression_statement assignment identifier false expression_statement assignment ... | Retrieves the list of include directories for building against the Unreal-bundled versions of the specified third-party libraries |
def build_option_parser(parser):
parser.add_argument(
"--os-data-processing-api-version",
metavar="<data-processing-api-version>",
default=utils.env(
'OS_DATA_PROCESSING_API_VERSION',
default=DEFAULT_DATA_PROCESSING_API_VERSION),
help=("Data processing API ver... | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end keyword_argument identifier call attribute identifier identifi... | Hook to add global options. |
def load(obj, settings_module, identifier="py", silent=False, key=None):
mod, loaded_from = get_module(obj, settings_module, silent)
if mod and loaded_from:
obj.logger.debug("py_loader: {}".format(mod))
else:
obj.logger.debug(
"py_loader: %s (Ignoring, Not Found)", settings_modul... | module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier false default_parameter identifier none block expression_statement assignment pattern_list identifier identifier call identifier argument_list id... | Tries to import a python module |
def _pick_align_split_size(total_size, target_size, target_size_reads, max_splits):
if total_size // target_size > max_splits:
piece_size = total_size // max_splits
return int(piece_size * target_size_reads / target_size)
else:
return int(target_size_reads) | module function_definition identifier parameters identifier identifier identifier identifier block if_statement comparison_operator binary_operator identifier identifier identifier block expression_statement assignment identifier binary_operator identifier identifier return_statement call identifier argument_list binar... | Do the work of picking an alignment split size for the given criteria. |
def _get_filekey(self):
if not os.path.exists(self.keyfile):
raise KPError('Keyfile not exists.')
try:
with open(self.keyfile, 'rb') as handler:
handler.seek(0, os.SEEK_END)
size = handler.tell()
handler.seek(0, os.SEEK_SET)
... | module function_definition identifier parameters identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end try_statement block with_s... | This method creates a key from a keyfile. |
def _gather_image_parts(self):
for rel in self.iter_rels():
if rel.is_external:
continue
if rel.reltype != RT.IMAGE:
continue
if rel.target_part in self.image_parts:
continue
self.image_parts.append(rel.target_part) | module function_definition identifier parameters identifier block for_statement identifier call attribute identifier identifier argument_list block if_statement attribute identifier identifier block continue_statement if_statement comparison_operator attribute identifier identifier attribute identifier identifier block... | Load the image part collection with all the image parts in package. |
def count_partitions(self, topic):
return sum(1 for p in topic.partitions if p in self.partitions) | module function_definition identifier parameters identifier identifier block return_statement call identifier generator_expression integer for_in_clause identifier attribute identifier identifier if_clause comparison_operator identifier attribute identifier identifier | Return count of partitions for given topic. |
def update(self, branch='default'):
log.debug('Updating hg repo from hg_pillar module (pull)')
self.repo.pull()
log.debug('Updating hg repo from hg_pillar module (update)')
self.repo.update(branch, clean=True) | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute attribute identifier iden... | Ensure we are using the latest revision in the hg repository |
def change_tunnel_ad_url(self):
if self.is_open:
self.close()
req = requests.delete('https://api.psiturk.org/api/tunnel/',
auth=(self.access_key, self.secret_key))
if req.status_code in [401, 403, 500]:
print(req.content)
return F... | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content st... | Change tunnel ad url. |
def _doc2vec_doc_stream(paths, n, tokenizer=word_tokenize, sentences=True):
i = 0
p = Progress()
for path in paths:
with open(path, 'r') as f:
for line in f:
i += 1
p.print_progress(i/n)
line = line.lower()
if sentences:
... | module function_definition identifier parameters identifier identifier default_parameter identifier identifier default_parameter identifier true block expression_statement assignment identifier integer expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block wit... | Generator to feed sentences to the dov2vec model. |
def device_info(device):
status = subprocess.check_output([
'ibstat', device, '-s']).splitlines()
regexes = {
"CA type: (.*)": "device_type",
"Number of ports: (.*)": "num_ports",
"Firmware version: (.*)": "fw_ver",
"Hardware version: (.*)": "hw_ver",
"Node GUID: ... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list list string string_start string_content string_end identifier string string_start string_content string_end identifier argument_list expression_s... | Returns a DeviceInfo object with the current device settings |
def _open(self, path, skip_to_end = True, offset = None):
fh = os.fdopen(os.open(path, os.O_RDONLY | os.O_NONBLOCK))
if offset is None:
if skip_to_end:
fh.seek(0, 2)
self._offset = fh.tell()
else:
self._offset = 0
else:
fh.seek(offset)
... | module function_definition identifier parameters identifier identifier default_parameter identifier true default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier binary_operator att... | Open `path`, optionally seeking to the end if `skip_to_end` is True. |
def address(self, is_compressed=None):
return self._network.address.for_p2pkh(self.hash160(is_compressed=is_compressed)) | module function_definition identifier parameters identifier default_parameter identifier none block return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier identifier | Return the public address representation of this key, if available. |
def reset_defaults(self):
self.save_login.setChecked(False)
self.save_password.setChecked(False)
self.save_url.setChecked(False)
set_setting(GEONODE_USER, '')
set_setting(GEONODE_PASSWORD, '')
set_setting(GEONODE_URL, '')
self.login.setText('')
self.passwo... | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list false expression_statement call attribute attribute identifier identifier identifier argument_list false expression_statement call attribute attribute identifier... | Reset login and password in QgsSettings. |
def base_url(self, space_id, content_type_id, environment_id=None, **kwargs):
return "spaces/{0}{1}/content_types/{2}/editor_interface".format(
space_id,
'/environments/{0}'.format(environment_id) if environment_id is not None else '',
content_type_id
) | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none dictionary_splat_pattern identifier block return_statement call attribute string string_start string_content string_end identifier argument_list identifier conditional_expression call attribute string str... | Returns the URI for the editor interface. |
def _sample_batch_prioritized(self, segment_tree, batch_size, history, forward_steps=1):
p_total = segment_tree.total()
segment = p_total / batch_size
batch = [
self._get_sample_from_segment(segment_tree, segment, i, history, forward_steps)
for i in range(batch_size)
... | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier binary_operator identifier identifier expressio... | Return indexes of the next sample in from prioritized distribution |
def step_use_curdir_as_working_directory(context):
context.workdir = os.path.abspath(".")
command_util.ensure_workdir_exists(context) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list ... | Uses the current directory as working directory |
def calc_std(c0, c1=[]):
if c1 == []:
return numpy.std(c0, 0)
prop = float(len(c0)) / float(len(c1))
if prop < 1:
p0 = int(math.ceil(1 / prop))
p1 = 1
else:
p0 = 1
p1 = int(math.ceil(prop))
return numpy.std(numpy.vstack(p0 * [c0] + p1 * [c1]), 0) | module function_definition identifier parameters identifier default_parameter identifier list block if_statement comparison_operator identifier list block return_statement call attribute identifier identifier argument_list identifier integer expression_statement assignment identifier binary_operator call identifier arg... | Calculates the variance of the data. |
def create_arguments(primary, pyfunction, call_node, scope):
args = list(call_node.args)
args.extend(call_node.keywords)
called = call_node.func
if _is_method_call(primary, pyfunction) and \
isinstance(called, ast.Attribute):
args.insert(0, called.value)
return Arguments(args, scope) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier expression_s... | A factory for creating `Arguments` |
def register_token_network(
self,
token_registry_abi: Dict,
token_registry_address: str,
token_address: str,
channel_participant_deposit_limit: Optional[int],
token_network_deposit_limit: Optional[int],
):
with_limits = contracts_versio... | module function_definition identifier parameters identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type generic_type... | Register token with a TokenNetworkRegistry contract. |
def _write_values(kwargs, variables):
writeto = []
for var_name, value in kwargs.items():
var = variables[var_name]
var.notify_will_write()
var.write(value)
writeto.append(var)
return _notify_reader_writes(writeto) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement assignment identifier subscript identifier identifier expression_sta... | Write values of kwargs and return thus-satisfied closures. |
def touch(self, pathobj):
if not pathobj.drive or not pathobj.root:
raise RuntimeError('Full path required')
if pathobj.exists():
return
url = str(pathobj)
text, code = self.rest_put(url, session=pathobj.session, verify=pathobj.verify, cert=pathobj.cert)
i... | module function_definition identifier parameters identifier identifier block if_statement boolean_operator not_operator attribute identifier identifier not_operator attribute identifier identifier block raise_statement call identifier argument_list string string_start string_content string_end if_statement call attribu... | Create an empty file |
def to_data_frame(sc, features, labels, categorical=False):
lp_rdd = to_labeled_point(sc, features, labels, categorical)
sql_context = SQLContext(sc)
df = sql_context.createDataFrame(lp_rdd)
return df | module function_definition identifier parameters identifier identifier identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list identifier identifier identifier identifier expression_statement assignment identifier call identifier argument_list identif... | Convert numpy arrays of features and labels into Spark DataFrame |
def v_type_base(ctx, stmt, no_error_report=False):
name = stmt.arg
stmt.i_identity = None
if name.find(":") == -1:
prefix = None
else:
[prefix, name] = name.split(':', 1)
if prefix is None or stmt.i_module.i_prefix == prefix:
pmodule = stmt.i_module
else:
pmodule ... | module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement assignment identifier attribute identifier identifier expression_statement assignment attribute identifier identifier none if_statement comparison_operator call attribute identifier ident... | verify that the referenced identity exists. |
def repo_tools(self, branch):
tools = []
m_helper = Tools()
repo = self.parentApp.repo_value['repo']
version = self.parentApp.repo_value['versions'][branch]
status = m_helper.repo_tools(repo, branch, version)
if status[0]:
r_tools = status[1]
for t... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier subscript attribute attribute identifier identifier identifier string string_st... | Set the appropriate repo dir and get the tools available of it |
def RGBA(self, val):
val = np.atleast_1d(val).astype(np.float32) / 255
self.rgba = val | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator call attribute call attribute identifier identifier argument_list identifier identifier argument_list attribute identifier identifier integer expression_statement assignment attribute ... | Set the color using an Nx4 array of RGBA uint8 values |
def smooth_rectangle(x, y, rec_w, rec_h, gaussian_width_x, gaussian_width_y):
gaussian_x_coord = abs(x)-rec_w/2.0
gaussian_y_coord = abs(y)-rec_h/2.0
box_x=np.less(gaussian_x_coord,0.0)
box_y=np.less(gaussian_y_coord,0.0)
sigmasq_x=gaussian_width_x*gaussian_width_x
sigmasq_y=gaussian_width_y*gau... | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier binary_operator call identifier argument_list identifier binary_operator identifier float expression_statement assignment identifier binary_operator call id... | Rectangle with a solid central region, then Gaussian fall-off at the edges. |
def help_text(self):
result = []
for name in sorted(self._declarations.keys()):
result.append(name)
result.append('-' * len(name))
decl = self._declarations[name]
if decl.description:
result.append(decl.description.strip())
else:
result.append('(no description found... | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list i... | Return a string with all config keys and their descriptions. |
def read_json_breakdown(cls, fname):
if not os.path.exists(fname):
raise RuntimeError
with open(fname, 'r') as data_file:
return cls.fixup_from_json(data_file.read()) | module function_definition identifier parameters identifier identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier block raise_statement identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string strin... | Read json file to get fixture data |
def url(self, name):
scheme = 'http'
path = self._prepend_name_prefix(name)
query = ''
fragment = ''
url_tuple = (scheme, self.netloc, path, query, fragment)
return urllib.parse.urlunsplit(url_tuple) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier string... | Return URL of resource |
def default_working_dir():
import nameset.virtualchain_hooks as virtualchain_hooks
return os.path.expanduser('~/.{}'.format(virtualchain_hooks.get_virtual_chain_name())) | module function_definition identifier parameters block import_statement aliased_import dotted_name identifier identifier identifier return_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribut... | Get the default configuration directory for blockstackd |
def _update_capacity(self, data):
if 'ConsumedCapacity' in data:
consumed = data['ConsumedCapacity']
if not isinstance(consumed, list):
consumed = [consumed]
for cap in consumed:
self.capacity += cap.get('CapacityUnits', 0)
self... | module function_definition identifier parameters identifier identifier block if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end if_statement not_operator call identi... | Update the consumed capacity metrics |
def append_sample(self, v, vartype, _left=False):
vstr = str(v).rjust(2)
length = len(vstr)
if vartype is dimod.SPIN:
def f(datum):
return _spinstr(datum.sample[v], rjust=length)
else:
def f(datum):
return _binarystr(datum.sample[v]... | module function_definition identifier parameters identifier identifier identifier default_parameter identifier false block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list integer expression_statement assignment identifier call identifier argume... | Add a sample column |
def _sub_nat(self):
result = np.zeros(len(self), dtype=np.int64)
result.fill(iNaT)
return result.view('timedelta64[ns]') | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call identifier argument_list identifier keyword_argument identifier attribute identifier identifier expression_statement call attribute identifier identifier a... | Subtract pd.NaT from self |
def _convert_dns_answer(cls, answer: dns.resolver.Answer) \
-> Iterable[AddressInfo]:
assert answer.rdtype in (dns.rdatatype.A, dns.rdatatype.AAAA)
if answer.rdtype == dns.rdatatype.A:
family = socket.AF_INET
else:
family = socket.AF_INET6
for record i... | module function_definition identifier parameters identifier typed_parameter identifier type attribute attribute identifier identifier identifier line_continuation type generic_type identifier type_parameter type identifier block assert_statement comparison_operator attribute identifier identifier tuple attribute attrib... | Convert the DNS answer to address info. |
def copy_id(self):
stdout, stderr, retcode = self._run_cmd(self._copy_id_str_old())
if salt.defaults.exitcodes.EX_OK != retcode and 'Usage' in stderr:
stdout, stderr, retcode = self._run_cmd(self._copy_id_str_new())
return stdout, stderr, retcode | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator attribute attribute attr... | Execute ssh-copy-id to plant the id file on the target |
def store_from(self, last_level_store):
assert isinstance(last_level_store, Cache), \
"last_level needs to be a Cache object."
assert last_level_store.store_to is None, \
"last_level_store must be a last level cache (.store_to is None)."
self.last_level_store = last_level... | module function_definition identifier parameters identifier identifier block assert_statement call identifier argument_list identifier identifier string string_start string_content string_end assert_statement comparison_operator attribute identifier identifier none string string_start string_content string_end expressi... | Set level where to store to. |
def make_path(phase) -> str:
return "{}/{}{}{}".format(conf.instance.output_path, phase.phase_path, phase.phase_name, phase.phase_tag) | module function_definition identifier parameters identifier type identifier block return_statement call attribute string string_start string_content string_end identifier argument_list attribute attribute identifier identifier identifier attribute identifier identifier attribute identifier identifier attribute identifi... | Create the path to the folder at which the metadata and optimizer pickle should be saved |
def median(timeseries, segmentlength, **kwargs):
if scipy_version <= '1.1.9999':
raise ValueError(
"median average PSD estimation requires scipy >= 1.2.0",
)
kwargs.setdefault('average', 'median')
return welch(timeseries, segmentlength, **kwargs) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block if_statement comparison_operator identifier string string_start string_content string_end block raise_statement call identifier argument_list string string_start string_content string_end expression_statemen... | Calculate a PSD using Welch's method with a median average |
def loadd(self, ava):
if "attributes" in ava:
for key, val in ava["attributes"].items():
self.attributes[key] = val
try:
self.tag = ava["tag"]
except KeyError:
if not self.tag:
raise KeyError("ExtensionElement must have a tag")
... | module function_definition identifier parameters identifier identifier block if_statement comparison_operator string string_start string_content string_end identifier block for_statement pattern_list identifier identifier call attribute subscript identifier string string_start string_content string_end identifier argum... | expects a special set of keys |
def delete_account(self, data):
error = False
msg = ""
username = self.user_manager.session_username()
result = self.database.users.find_one_and_delete({"username": username,
"email": data.get("delete_email", "")})
if not ... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier false expression_statement assignment identifier string string_start string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expre... | Delete account from DB |
def majority(image, mask=None, iterations=1):
global majority_table
if mask is None:
masked_image = image
else:
masked_image = image.astype(bool).copy()
masked_image[~mask] = False
result = table_lookup(masked_image, majority_table, False, iterations)
if not mask is None:
... | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier integer block global_statement identifier if_statement comparison_operator identifier none block expression_statement assignment identifier identifier else_clause block expression_statement assignm... | A pixel takes the value of the majority of its neighbors |
def _get_struct_shapewithstyle(self, shape_number):
obj = _make_object("ShapeWithStyle")
obj.FillStyles = self._get_struct_fillstylearray(shape_number)
obj.LineStyles = self._get_struct_linestylearray(shape_number)
bc = BitConsumer(self._src)
obj.NumFillBits = n_fill_bits = bc.u_... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifie... | Get the values for the SHAPEWITHSTYLE record. |
def _feature_returner(self, **kwargs):
kwargs.setdefault('dialect', self.dialect)
kwargs.setdefault('keep_order', self.keep_order)
kwargs.setdefault('sort_attribute_values', self.sort_attribute_values)
return Feature(**kwargs) | module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement call attribute identifier identifier argument_l... | Returns a feature, adding additional database-specific defaults |
def projR(gamma, p):
return np.multiply(gamma.T, p / np.maximum(np.sum(gamma, axis=1), 1e-10)).T | module function_definition identifier parameters identifier identifier block return_statement attribute call attribute identifier identifier argument_list attribute identifier identifier binary_operator identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list iden... | return the KL projection on the row constrints |
def _drop_indices(self):
self._logger.info('Dropping database indices')
self._conn.execute(constants.DROP_TEXTNGRAM_INDEX_SQL)
self._logger.info('Finished dropping database indices') | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier i... | Drops the database indices relating to n-grams. |
def basic_map(proj):
fig = plt.figure(figsize=(15, 10))
add_metpy_logo(fig, 0, 80, size='large')
view = fig.add_axes([0, 0, 1, 1], projection=proj)
view.set_extent([-120, -70, 20, 50])
view.add_feature(cfeature.STATES.with_scale('50m'))
view.add_feature(cfeature.OCEAN)
view.add_feature(cfeat... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier tuple integer integer expression_statement call identifier argument_list identifier integer integer keyword_argument identifier stri... | Make our basic default map for plotting |
def register(self, scope, *args, **kwargs):
self._assert_not_frozen()
self.get_parser(scope).register(*args, **kwargs)
deprecated_scope = self.known_scope_to_info[scope].deprecated_scope
if deprecated_scope:
self.get_parser(deprecated_scope).register(*args, **kwargs) | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list expression_statement call attribute call attribute identifier identifier argument_list identifier identif... | Register an option in the given scope. |
def reset_weights(self):
if self.fk.isAPF:
lw = (rs.log_mean_exp(self.logetat, W=self.W)
- self.logetat[self.A])
self.wgts = rs.Weights(lw=lw)
else:
self.wgts = rs.Weights() | module function_definition identifier parameters identifier block if_statement attribute attribute identifier identifier identifier block expression_statement assignment identifier parenthesized_expression binary_operator call attribute identifier identifier argument_list attribute identifier identifier keyword_argumen... | Reset weights after a resampling step. |
async def status_by_state(self, state: str) -> dict:
data = await self.raw_cdc_data()
try:
info = next((v for k, v in data.items() if state in k))
except StopIteration:
return {}
return adjust_status(info) | module function_definition identifier parameters identifier typed_parameter identifier type identifier type identifier block expression_statement assignment identifier await call attribute identifier identifier argument_list try_statement block expression_statement assignment identifier call identifier argument_list ge... | Return the CDC status for the specified state. |
def ranges(self):
ranges = self._target.getRanges()
return map(SheetAddress._from_uno, ranges) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list return_statement call identifier argument_list attribute identifier identifier identifier | Returns a list of addresses with source data. |
def _get_cells(self, left, right, vertical):
if vertical:
vcells = max(sum(self._shape(l)[0] for l in left),
self._shape(right)[0])
hcells = (max(self._shape(l)[1] for l in left) +
self._shape(right)[1])
else:
vcells = ma... | module function_definition identifier parameters identifier identifier identifier identifier block if_statement identifier block expression_statement assignment identifier call identifier argument_list call identifier generator_expression subscript call attribute identifier identifier argument_list identifier integer f... | Calculate appropriate figure size based on left and right data. |
def getFixedStarList(IDs, date):
starList = [getFixedStar(ID, date) for ID in IDs]
return FixedStarList(starList) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension call identifier argument_list identifier identifier for_in_clause identifier identifier return_statement call identifier argument_list identifier | Returns a list of fixed stars. |
def returner(ret):
serv = _get_serv(ret)
json_return = salt.utils.json.dumps(ret['return'])
del ret['return']
json_full_ret = salt.utils.json.dumps(ret)
if "influxdb08" in serv.__module__:
req = [
{
'name': 'returns',
'columns': ['fun', 'id', 'jid'... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list subscript identifier string string... | Return data to a influxdb data store |
def _assemble_activeform(stmt):
subj_str = _assemble_agent_str(stmt.agent)
if stmt.is_active:
is_active_str = 'active'
else:
is_active_str = 'inactive'
if stmt.activity == 'activity':
stmt_str = subj_str + ' is ' + is_active_str
elif stmt.activity == 'kinase':
stmt_st... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier if_statement attribute identifier identifier block expression_statement assignment identifier string string_start string_content string_end else_clau... | Assemble ActiveForm statements into text. |
def print_bytes(byte_str):
if isinstance(byte_str, str):
print(byte_str)
else:
print(str(byte_str, encoding='utf8')) | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block expression_statement call identifier argument_list identifier else_clause block expression_statement call identifier argument_list call identifier argument_list identifier keyword_arg... | Prints a string or converts bytes to a string and then prints. |
def all_macro_systems(network, state, do_blackbox=False, do_coarse_grain=False,
time_scales=None):
if time_scales is None:
time_scales = [1]
def blackboxes(system):
if not do_blackbox:
return [None]
return all_blackboxes(system)
def coarse_grains(bla... | module function_definition identifier parameters identifier identifier default_parameter identifier false default_parameter identifier false default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier list integer function_definition identifi... | Generator over all possible macro-systems for the network. |
def pitch(self):
x, y, z, w = self.x, self.y, self.z, self.w
return math.atan2(2*x*w - 2*y*z, 1 - 2*x*x - 2*z*z) | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier identifier expression_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier return_statement call... | Calculates the Pitch of the Quaternion. |
def entries_published(queryset):
now = timezone.now()
return queryset.filter(
models.Q(start_publication__lte=now) |
models.Q(start_publication=None),
models.Q(end_publication__gt=now) |
models.Q(end_publication=None),
status=PUBLISHED, sites=Site.objects.get_current()) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list binary_operator call attribute identifier identifier argument_list keyword_argument identifi... | Return only the entries published. |
def dtype_repr(dtype):
dtype = np.dtype(dtype)
if dtype == np.dtype(int):
return "'int'"
elif dtype == np.dtype(float):
return "'float'"
elif dtype == np.dtype(complex):
return "'complex'"
elif dtype.shape:
return "('{}', {})".format(dtype.base, dtype.shape)
else:... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier call attribute identifier identifier argument_list identifier block return_statement string string_start ... | Stringify ``dtype`` for ``repr`` with default for int and float. |
def precision(precision, id_, hwid, type_):
if id_ and (hwid or type_):
raise click.BadOptionUsage(
"If --id is given --hwid and --type are not allowed."
)
if id_:
try:
sensor = W1ThermSensor.get_available_sensors()[id_ - 1]
except IndexError:
... | module function_definition identifier parameters identifier identifier identifier identifier block if_statement boolean_operator identifier parenthesized_expression boolean_operator identifier identifier block raise_statement call attribute identifier identifier argument_list string string_start string_content string_e... | Change the precision for the sensor and persist it in the sensor's EEPROM |
def update(self):
if self.device_time_check():
if not self.in_process:
outlets, switches, fans = self.get_devices()
self.outlets = helpers.resolve_updates(self.outlets, outlets)
self.switches = helpers.resolve_updates(
self.switches... | module function_definition identifier parameters identifier block if_statement call attribute identifier identifier argument_list block if_statement not_operator attribute identifier identifier block expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argum... | Fetch updated information about devices |
def fix_job_def(job_def):
if six.PY2 and isinstance(job_def.get('func'), six.text_type):
job_def['func'] = str(job_def.get('func'))
if isinstance(job_def.get('start_date'), six.string_types):
job_def['start_date'] = dateutil.parser.parse(job_def.get('start_date'))
if isinstance(job_def.get('... | module function_definition identifier parameters identifier block if_statement boolean_operator attribute identifier identifier call identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier block expression_statement assign... | Replaces the datetime in string by datetime object. |
def retry(self):
logger.info('Job {0} retrying all failed tasks'.format(self.name))
self.initialize_snapshot()
failed_task_names = []
for task_name, log in self.run_log['tasks'].items():
if log.get('success', True) == False:
failed_task_names.append(task_name)... | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argume... | Restarts failed tasks of a job. |
def digest_auth(realm, auth_func):
def digest_auth_decorator(func):
def func_replacement(self, *args, **kwargs):
if self.get_authenticated_user(auth_func, realm):
return func(self, *args, **kwargs)
return func_replacement
return digest_auth_decorator | module function_definition identifier parameters identifier identifier block function_definition identifier parameters identifier block function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement call attribute identifier identifier argument_... | A decorator used to protect methods with HTTP Digest authentication. |
def from_json(s):
d = json.loads(s)
sbp = SBP.from_json_dict(d)
return sbp | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement identifier | Given a JSON-encoded message, build an object. |
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