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module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier if_statement not_operator call identifier argument_list identifier identifier block raise_statement call identifier a...
Render the tag, with extra context layer.
module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end return_statement call identifier argument_list identifier call identifier argument_list call identifier argument_list identifier call identifier argument_list identifier
do diff on words but return character offsets
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier key...
Request each state to provide status update.
module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block function_definition identifier parameters default_parameter identifier none default_parameter identifier none block return_statement expression_list identifier identifier identifier return_statement identifi...
This default image loader just returns filename, rect, and any flags
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment subscript attribute identifier identifier string string_start string_content string_e...
Generate a results object for delivery to the context object
module function_definition identifier parameters identifier type identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list return_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content...
Return the workflow stage status.
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list string string_st...
HLA typing with bwakit, parsing output from called genotype files.
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement attribute identifier identifier expression_statement assignment identifier call identifier argument_list identifier...
Main logic for HTTP endpoint.
module function_definition identifier parameters identifier block decorated_definition decorator call identifier argument_list identifier function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier attribute iden...
Preserve shape of the image.
module function_definition identifier parameters identifier identifier identifier block if_statement boolean_operator comparison_operator identifier call attribute identifier identifier argument_list comparison_operator call identifier argument_list subscript attribute identifier identifier identifier integer block ret...
Take all elements from the from_group and add it to the to_group.
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list function_definition identifier parameters identifier block expression_statement assignment tuple_pattern identifier identifier identifier expression_statement assignment identifier ...
Create an ordered dict of the names and values of key fields.
module function_definition identifier parameters identifier identifier identifier identifier identifier default_parameter identifier none block expression_statement assignment identifier call identifier argument_list identifier identifier identifier identifier identifier keyword_argument identifier identifier expressio...
Runs the folder upload in the background.
module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement comparison_operator subscript identifier slice integer integer string string_start string_content strin...
Adds configuration parameters from a Python module.
module function_definition identifier parameters block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end try_statement block expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_c...
Use the commit date in UTC as folder name
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_end default_parameter identifier false block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier ...
Creates a new apio project file
module function_definition identifier parameters identifier identifier block for_statement identifier identifier block expression_statement assignment identifier call identifier argument_list call identifier argument_list call identifier argument_list identifier expression_statement assignment identifier call identifie...
Replace characters sliced by slices with gap characters.
module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier call attribute string string_start string_content string_end identifier argument_l...
Load strain GEMPRO with functional genes defined, load sequences to it, save as new GEMPRO
module function_definition identifier parameters identifier identifier identifier block return_statement call attribute identifier identifier argument_list attribute identifier identifier identifier identifier
Add buffer into digest calculation
module function_definition identifier parameters identifier default_parameter identifier true block if_statement identifier block expression_statement call attribute identifier identifier argument_list with_statement with_clause with_item attribute identifier identifier with_item attribute identifier identifier with_it...
Draw each visible mesh in the scene from the perspective of the scene's camera and lit by its light.
module function_definition identifier parameters default_parameter identifier none block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier for_statement identifier identifier block expression_statement assignment identifier none if_statement call attribute i...
Construct a list of User objects from a list of dicts.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier string string_start string_content string_end
Read block data from network into integer type
module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list concatenated_string string string_start string_content escape_sequence string_end string string_start string_content string_end expression_...
Delete the specified image.
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list subscript identifier slice unary_operator integer integer for_statement identifier subscript identifier slice unary_operator integer block expression_statement augmented_assignment ...
Ensure checksum in message is good.
module function_definition identifier parameters identifier block if_statement attribute identifier identifier block return_statement call identifier argument_list call attribute attribute identifier identifier identifier argument_list attribute identifier identifier return_statement none
Get the parent category
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier conditional_expression string string_start string_content string_end call identifier generator_expression attribute attribute attribute identifier identifier identifier identifier for_in_clause identi...
Default Euclidean inner product implementation.
module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier return_statement parenthesized_expression yield call attribute identifier identifier argument_list binary_operator string string_start stri...
Remove a zone from the watchlist.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list identifier function_definition identifier parameters identifier block if_statement not_operator call identifier argumen...
Return the schema's children, filtered by location.
module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier if_statement identifier block expression_statement ca...
Public method to call the internal methods
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list string string_start string_content string_end identifier argument_list identifier if_statement not_operator identifier block expression_statement...
Returns the stored Analyst or the user who submitted the result
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list integer identifier for_statement identifier call identifier argument_list attribute identifier identifier block if_statement comparison_operator subs...
Compute the gradient of the energy for one atom
module function_definition identifier parameters identifier identifier default_parameter identifier none block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute ident...
Update the cache for global names in `resource`
module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end default_parameter identifier false default_parameter identifier true default_parameter identifier false block expression_statement assignment identifier call attribute identifier identi...
Allows user to save all lyrics within an Artist object
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier dictionary expression_statement assignment identifier call attribute identifier identifier argument_list decorated_definition decorator ca...
Memoizing decorator for f, which must have exactly 1 hashable argument.
module function_definition identifier parameters block with_statement with_clause with_item as_pattern call identifier argument_list string string_start string_content string_end as_pattern_target identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_s...
RX and TX bytes for each of the network devices
module function_definition identifier parameters identifier identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none block expression_statement assignm...
Run peuker-douglas function
module function_definition identifier parameters identifier block expression_statement assignment identifier parenthesized_expression call attribute call attribute call attribute attribute attribute identifier identifier identifier identifier argument_list identifier argument_list string string_start string_content str...
Shows the latest results for each source
module function_definition identifier parameters identifier identifier block for_statement identifier call identifier argument_list integer binary_operator attribute identifier identifier integer block for_statement identifier call identifier argument_list integer binary_operator attribute identifier identifier integer...
returns the column number for a given column heading name, 0 if not found
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list call identifier argument_list identifier expression_statement assignment identifier subscript call attribute identifier identifier argument_list identifier integer return...
Encode a set for the DynamoDB format
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute attribute iden...
Compute the distance between two images.
module function_definition identifier parameters identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list identifier except_clause identifier block pass_statement for_statement identifier call attribute identifier identifier argument_list identifier block t...
Similar to shutils.copytree, except that dst is already there
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier none block if_statement comparison_operator identifier identifier block return_statement expression_list ...
Calculates the range of an axis of a viewBox.
module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list call identifier argument_list attribute identifier identifier block if_statement call attribute attribute identifier identifier identifier argument_lis...
Return a list of the selected axes.
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier binary_operator binary_operator identifier identifier integer expression_statement assignment identifier binary_operator identifier identifier expression_statement assignment ide...
Calculate Dale-Chall readability score.
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_co...
Build the page for the provided year.
module function_definition identifier parameters identifier identifier block expression_statement list_comprehension call attribute identifier identifier argument_list identifier identifier for_in_clause pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list
populate an rdflib graph with these curies
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier dictionary for_statement identifier identifier block for_statement identifier subscript identifier identif...
Generates a basic confirm schema file from a configuration file.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier string string...
Write out a new readme file.
module function_definition identifier parameters identifier default_parameter identifier false block import_from_statement dotted_name identifier identifier identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list identifier expression_statement call attribute identifie...
Sync the file config into the library proxy data in the root dataset
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier keyw...
Gets the catalog hierarchy
module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier integer keyword_argument identifier attribute identifier identifier
Turn the LED off for a group.
module function_definition identifier parameters identifier identifier block expression_statement call identifier argument_list list identifier string string_start string_content string_end attribute identifier identifier identifier binary_operator string string_start string_content string_end tuple identifier attribut...
Delete an interface from the bridge.
module function_definition identifier parameters identifier type identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier attri...
Initialize the execution environment.
module function_definition identifier parameters identifier identifier block global_statement identifier return_statement call attribute attribute identifier identifier identifier argument_list identifier keyword_argument identifier identifier
Executes an xpath expression using the correct namespaces
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list expression_statement assignment identifier list_comprehension dictionary_comprehension pair identifier subscript i...
Store output of team players to a JSON file
module function_definition identifier parameters identifier block if_statement comparison_operator call identifier argument_list identifier integer block return_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute identifier iden...
Return the sample mean.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier false expression_statement call attribute attribute identifier identifier identifier argument_list identifier
Write data to config file.
module function_definition identifier parameters identifier identifier identifier block if_statement not_operator attribute identifier identifier block return_statement for_statement identifier attribute identifier identifier block if_statement attribute identifier identifier block if_statement boolean_operator compari...
Make subreport text in a specified format
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier for_statement identifier attribute identifier identifier block expression_statement assignment identifier...
launch an async job, if poll_interval is set, wait for completion
module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier integer if_statement comparison_operator identifier attribute ide...
Adds an occurrence of the term in the specified document.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier identifier if_statement ...
Handle flush error exceptions.
module function_definition identifier parameters identifier identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identif...
Generate oAuth1.0a URL
module function_definition identifier parameters identifier identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call...
Run a request function under audit.
module function_definition identifier parameters identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list call identifier argument_list identifier attribute identifier identifier expression_statement assignment identifier list for_statement identifier ...
Makes a key suitable as a memcache entry.
module function_definition identifier parameters identifier identifier list_splat_pattern identifier default_parameter identifier true dictionary_splat_pattern identifier type identifier block return_statement call attribute identifier identifier argument_list identifier list_splat identifier keyword_argument identifie...
Convenience method for logging an ERROR with exception information.
module function_definition identifier parameters identifier default_parameter identifier true default_parameter identifier false block if_statement boolean_operator not_operator attribute identifier identifier not_operator attribute identifier identifier block expression_statement assignment attribute identifier identi...
Close the socket connection.
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call identifier argument_list identifier keyword_argume...
Executor for `globus endpoint my-shared-endpoint-list`
module function_definition identifier parameters default_parameter identifier integer block import_statement dotted_name identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier true return_statement call identifier argument_list list_comprehen...
Returns the number of cpus with utilization less than `thresh` percent
module function_definition identifier parameters identifier block function_definition identifier parameters identifier identifier block expression_statement call identifier argument_list expression_statement call attribute identifier identifier argument_list integer expression_statement call attribute identifier identi...
The main loop a worker runs to receive and execute tasks.
module function_definition identifier parameters identifier default_parameter identifier false default_parameter identifier call identifier argument_list block if_statement not_operator call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argu...
Write filename out to disk
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list subscript attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list call identifier argument_list subscript attribute identifie...
Translates OUT to asm.
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list list_comprehension tuple subscript identifi...
Strip a prefix from the keys of another dictionary, returning a Bunch containing only valid key, value pairs.
module function_definition identifier parameters block expression_statement assignment identifier call attribute identifier identifier argument_list integer identifier expression_statement assignment identifier call identifier argument_list identifier return_statement call identifier argument_list identifier identifier
Generate a random string of `BLOCK_SIZE` length.
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier call attribute attribute...
Return dictionary of overlays generated from added item metadata.
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement comparison_operator call identifier argument_list identifier integer block return_statement subscript...
Converts django's `LANGUAGE_CODE` settings to a proper locale code.
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement assignment attribute attribute identifier identifier identifier identifier expression_statement call attribute identifier identifier argument_list ...
Initialize the APScheduler with a Flask application instance.
module function_definition identifier parameters block import_from_statement dotted_name identifier dotted_name identifier expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list string string_start string_content string_end expression_statem...
Retrieve versions of tools installed via brew.
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier tuple integer integer integer block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call identifier argument_list identifie...
make sure the value is a string, paying mind to python3 vs 2
module function_definition identifier parameters identifier block expression_statement assignment identifier integer for_statement identifier call identifier argument_list attribute attribute identifier identifier identifier block expression_statement augmented_assignment identifier parenthesized_expression binary_oper...
Return a mask to determine whether an array chunk has any ones.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list for_statement identifier identifier block if_statement not_operator call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_li...
Ensure all items in a list are frames by converting those that aren't.
module function_definition identifier parameters identifier block function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block if_statement not_operator comparison_operator attribute identifier identifier string string_start string_content string_end block...
Check the permissions, http method and login state.
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignmen...
Build the final source code for all modules.
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement yield else_clause block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier try_sta...
Temporarily alter umask to custom setting, if applicable
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list string string_start string_content string_end list call attribute identifier identifier argument_list string string_start ...
Configure genome annotations to install based on datatarget.
module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier none block return_statement expression_statement assignment identifier call attribute call attribute identifier identifier argument_list string string_start string_content string_end ident...
gets called by the bluepy backend when using wait_for_notification
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier binary_operator attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier dictionary pair string string_start strin...
Creates a relationship between 3 entities in database
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier parenthesized_expression binary_operator string string_start string_content string_end tuple identifier identifier expression_statement call attribute attribute identifier identifier identi...
When making the request, if an error happens, log it.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension attribute identifier identifier for_in_clause identifier identifier return_statement call identifier argument_list call identifier argument_list identifier
Returns a dictionary of leases by current owner.
module function_definition identifier parameters identifier identifier default_parameter identifier none dictionary_splat_pattern identifier block if_statement comparison_operator identifier none block return_statement call attribute identifier identifier argument_list identifier identifier return_statement call attrib...
Optionally apply a format string.
module function_definition identifier parameters identifier identifier block if_statement attribute attribute identifier identifier identifier block return_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier dictionary return_statement dictionary
Returns widget kwargs for given field_name.
module function_definition identifier parameters identifier identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier id...
Return votes cast in a chamber on a single day
module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end try_statement block if_statement parenthesized_expression boolean_operator call identifier argument_list string string_start string_content string...
Ensure connection to CloudWatch
module function_definition identifier parameters identifier dictionary_splat_pattern identifier block if_statement parenthesized_expression boolean_operator comparison_operator string string_start string_content string_end identifier comparison_operator subscript identifier string string_start string_content string_end...
Update the current calculation parameters and save engine_version
module function_definition identifier parameters identifier default_parameter identifier true block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content escape_sequence escape_sequence string_end keyword_argument identifier unary_operator intege...
If 'parse_result' is False, ignore the received output and return None.
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end dictionary if_statement boolean_operator not_operator call identifier argument_list identifie...
Schema for all additional properties, or False.
module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment subscript attribute identifier identifier string string_start string_content string...
Stop redrawing the canvas at the previously set timed interval.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argume...
Run Fabric commands against EC2 instances
module function_definition identifier parameters identifier list_splat_pattern identifier block expression_statement assignment attribute identifier identifier call identifier generator_expression call attribute identifier identifier argument_list identifier for_in_clause identifier identifier expression_statement assi...
Declare dimensions for this Measurement, returns self for chaining.
module function_definition identifier parameters identifier block expression_statement call identifier argument_list string string_start string_content string_end expression_statement call identifier argument_list attribute identifier identifier expression_statement call identifier argument_list attribute identifier id...
Print the bounding box that this DEM covers
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end for_statement identifier identifier blo...
Convert an input string into a list of paragraphs.
module function_definition identifier parameters identifier identifier default_parameter identifier integer default_parameter identifier none block expression_statement string string_start string_content string_end expression_statement call attribute attribute identifier identifier identifier argument_list concatenated...
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