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module function_definition identifier parameters identifier block with_statement with_clause with_item attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list for_statement identifier identifier block try_statement block ex...
Unregisters all bundle services
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier call subscript identifier string string_start string_content string_end argument_list identifier keyword_argument identifier identifier keyword...
Retrieve the pillar data from the right environment.
module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block if_statement not_operator call attribute attribute identifier identifier identifier argument_list identifier false block raise_statement call attribute identifier identifier argument_list bin...
Validate required headers and validate notification headers
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier list for_statement pattern_list identifier identifier call attribute call identifier argument_list identifier identifier argument_list block if_statemen...
Top level entry point for calculating heterogeneity, handles organization and job distribution.
module function_definition identifier parameters identifier identifier block try_statement block return_statement list subscript identifier identifier except_clause identifier block return_statement list_comprehension subscript identifier identifier for_in_clause identifier call identifier argument_list call attribute ...
Multiple flags might be packed in the same field.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list_comprehension call identifier argument_list integer identifier binary_operator call identifier argument_list identifier identifier for_in_clause pattern_list identifier identifier call identifier...
Rebin an array to a new shape.
module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end call attribute string string_start string_content string_end identifier generator_expression call attribute string string_start string_content string...
Return a tuple of the doc parms.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier identifier if_statement comparison_operator identifier false block expression_statement assignment identifier identifier expression_statement call attribute attribute identifier identifier identifier ...
Writes a Boolean to the stream.
module function_definition identifier parameters identifier default_parameter identifier parenthesized_expression binary_operator integer integer block expression_statement assignment identifier list_comprehension tuple identifier call identifier argument_list identifier for_in_clause identifier identifier while_statem...
Strip a list of files
module function_definition identifier parameters block global_statement identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end identifier expression_statement assignment pattern_list identifier identifier identifier if_statement boolean_operator identifier id...
Create the HTTP client with authentication credentials if required.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier await call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list true expression_statement assignment i...
Generate an access token for a given user.
module function_definition identifier parameters identifier identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier identifier for_statement identifier call attribute attribute identifier identifier identifier argument_list string string_start string_co...
Check if imported module exists in MODULES.
module function_definition identifier parameters identifier default_parameter identifier tuple block expression_statement assignment identifier call identifier argument_list identifier for_statement identifier identifier block if_statement comparison_operator call identifier argument_list identifier integer block raise...
Create a StateList object from a 'states' Workflow attribute.
module function_definition identifier parameters identifier identifier identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content escape_sequence string_end identifier argument_list identifier subscript identifier slice identifier binary_operator identifi...
Raise an exception with given message and text at i.
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list for_statement identifier generator_expression subscript identifier integer for_in_clause identifier identifier block expression_statement assignment identifier ...
Collapse regions to a single representative by BAM input, variant caller and batch.
module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier for_statement pattern_list identifier identifier identifier c...
Generate relative template pathes.
module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier keyword_argument identifier call attribute identifier identifier argument_list string string_start string_content...
Remove an typeattr from an existing type
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block return_statement call attribute attribute identifier identifier identifier argument_list identifier call identifier argument_list identifier
Returns the checksum of the given path.
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block expression_statement call attr...
Terminate all processes in the process dictionary
module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block if_statement comparison_operator identifier string string_start string_content string_end block if_statement not_operator call attribute attribute identifier identifier identifier...
Check if a file or a folder exists
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument...
Computes cleared offers and bids.
module function_definition identifier parameters identifier block expression_statement assignment identifier integer expression_statement augmented_assignment identifier identifier if_statement comparison_operator identifier integer block return_statement call attribute string string_start string_content string_end ide...
Creates a string representation of memory size given `number`.
module function_definition identifier parameters identifier identifier identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier except_clause attribute identifier identifier block raise_...
Get all the operations for a given pzone.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier return_statement call identifier argument_list lambda lambda_parameters iden...
Get the status and times of a recently completed purge.
module function_definition identifier parameters identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier none expression_statement assignment identifier none if_statement comparison_operator call attribute ...
Returns the robots meta tag.
module function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content str...
Sum up all of the stat columns.
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute call identifier argument_list identifier identifier argument_list expression_statement assignment identifier dic...
Creates genome size dict from string containing data.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute call attribute attribute identifier identifier identifier argument_list identifier for_statement identifier attribute attribute identifier identifier identifier block expression_statement as...
Send prefix to active pane.
module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier block if_statement call identifier argument_list identifier string string_start string_content string_end block return_statement attribute identifier identifier raise_statement expression_list identif...
Work out which source or compiled file an object was defined in.
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end subscript call attribute attribute identifier identifier identifier argument_list identifier integer expression_statement assig...
Create list of input files for merge, ensuring all files are valid.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement not_operator call attribute identifier identifier argument_list attribute identifier identifier block expression_statement assignment identifier attribute ...
Regular if-then-else statement.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier list_comprehension identifier for_in_clause identifier call attribute attribute identifier identifier identifier argument_list ...
Object instance -> Dict of primitive datatypes.
module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block return_statement identifier if_statement call identifier argument_list identifier identifier block return_statement identifier if_statement not_operator identifier block return_statem...
Deserialize a representation of a BNode or URIRef.
module function_definition identifier parameters identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribu...
Example of function for token update
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute attribute identifier identifier identifier identifier expression_statement assignment attribute identifier identifier list if_sta...
Construct the list of files to be tracked by the runlog.
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier true block if_statement comparison_operator identifier none block return_statement call attribute identifier identifier argument_list string string_start string_co...
Favorite or unfavorite room.
module function_definition identifier parameters identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier expressi...
Adding a delay after login.
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute string string_start string_end identifier argument_list call attribute identifier identifier argument_list list_splat identifier expression_statement assignment id...
Handle general exceptions in workflow, saving states.
module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier string string_start string_content string_end default_parameter identifier none block if_statement call attribute attribute identifier identifier identi...
Returns Authorization type and GP headers
module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier identifier identifier identifier block expression_statement assignment attribute identifier identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list id...
Read HMET WES from File Method
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator attribute identifier identifier identifier while_statement identifier block expression_statement assignment pattern_list identifier identifier identifier call attribute iden...
Split data into a sequence of lines.
module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier assignment attribute identifier identifier none expression_statement assignment attribute identifier identifier false expression_statement call attribute attribute identifier identifier iden...
Clear the rubber band for the analysis extents.
module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier return_statement list tuple attribute attribute identifier identifier identifier string string_start string_content string_end tuple attribute attribute attri...
Tokens for the arg-prompt.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list tuple attribute identifier identifier attribute identifi...
Compute term-topic matrix from sampled_topics.
module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier attribute identifier identifier expression_statement assignment attribute identifier identifier true try_statement block expression_s...
check for validity of value
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement as...
List all ElastiCache Clusters.
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list for_statement identifier identifier block expression_statement assignment id...
merge all fastqc samples into one by module
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier identifier identifier identifier call attribute identifier identifier argument_list call attribute ...
Returns a uniform timestamp with parameter values for file identification
module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list lambda lambda_parameters identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attrib...
Configure associated namespace browser widget
module function_definition identifier parameters identifier block for_statement pattern_list identifier identifier call identifier argument_list attribute identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifi...
If target is of remote type, resolve it
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier expression_statement assignment identifier yield call identifier argument_list identifier...
Given a SourcesField, request a Snapshot for its path_globs and create an EagerFilesetWithSpec.
module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none block expression_statement assignment identifier list ide...
Calls lower level function to create a peptide quant lookup
module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list list_comprehension binary_operator identifier subscript attribute identifier identifier identifier for_in_clause pattern_list identifier identifier call attribute identifier i...
Return a Vector instance as the vector sum of two vectors.
module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list return_statement attribute identifier identifier
Print an horizontal line
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list tuple call attribute identifier identifier argument_lis...
return a normalized version of abmn
module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block for_statement identifier identifier block try_statement block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier call attri...
Seed new initial values for the stochastics.
module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier try_statement block ex...
Loads a ``vtkTexture`` from an image file.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement not_operator call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call attribu...
Transform a geometry in place
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call identifier argument_list attribute attribute identifier identifier identifier attribute identifier identifier integer return_statement binary_operator bina...
Return the first day of week for Pesach.
module function_definition identifier parameters identifier dictionary_splat_pattern identifier block if_statement call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list binary_operator attribute ide...
Generate x for open loop movements.
module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement not_operator call attribute identifier identifier argument_list block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end return_s...
Removes specified files from fb
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list call attribute attri...
retrieve data from an HTTP URL
module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement call subscript attribute identifier identifier string string_start string...
Remove a pause from a jid, allowing it to continue
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content strin...
Initialize a AlignedElement object from a json dictionary.
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator identifier false block if_statement boolean_operator not_operator call attribute identifier identifier argument_lis...
Uploads distribuition files to pypi or pypitest.
module function_definition identifier parameters identifier default_parameter identifier true default_parameter identifier none default_parameter identifier attribute identifier identifier default_parameter identifier string string_start string_content string_end default_parameter identifier integer default_parameter i...
Handler for logging to a file, rotating the log file at certain timed intervals.
module function_definition identifier parameters identifier identifier identifier default_parameter identifier string string_start string_content string_end block return_statement call identifier argument_list identifier identifier identifier identifier
Fetch the user deatil from Passwordless
module function_definition identifier parameters identifier identifier block if_statement not_operator identifier block raise_statement call identifier argument_list string string_start string_content string_end assert_statement comparison_operator call identifier argument_list identifier integer expression_statement a...
Combine multiple Schnorr partial signatures.
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end attribute identifier identifier return_statement attribute call attribute identifier identifier argument_list identifier dictio...
This method is untested.
module function_definition identifier parameters identifier identifier block if_statement comparison_operator attribute identifier identifier integer block return_statement true if_statement comparison_operator attribute identifier identifier identifier block expression_statement assignment identifier await call attrib...
Check the response for correctness.
module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement tuple_pattern identifier identifier call attribute attribute attribute identifier identifier identifier identifier argument_list block expression_statement assignment identifier subscript iden...
Lists all the triggers that the current user is authorized to access
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none block return_statement call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute attribu...
Helper function for creating MetricMetadata for counter metrics.
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block if_statement not_operator identifier block return_statement call identifier argument_list identifier string string_start string_content string_end expression_statement ...
Length of the highest index in chars = justification size
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement assignment attribute identifier identifier list for_statement identifier attribute ...
Load all extension files into the namespace pykwalify.ext
module function_definition identifier parameters identifier identifier identifier dictionary_splat_pattern identifier block if_statement attribute identifier identifier block expression_statement call attribute call attribute call attribute attribute identifier identifier identifier argument_list keyword_argument ident...
Post save hook to ensure that there is only one default
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier generator_expression identifier for_in_clause identifier attribute identifier identifier if_clause boolean_operator comparison_operator attribute identifier identifier identifier comparison...
Return exactly one function to convert from source to target
module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list attribute identifier identifier identifier call identifier argument_list identifier
Return a STR instruction.
module function_definition identifier parameters identifier block try_statement block expression_statement call attribute identifier identifier argument_list unary_operator attribute identifier identifier attribute identifier identifier except_clause identifier block pass_statement expression_statement assignment attri...
We are no more interested in this remote process
module function_definition identifier parameters identifier block return_statement binary_operator string string_start string_content string_end line_continuation tuple call identifier argument_list attribute identifier identifier call identifier argument_list attribute identifier identifier call identifier argument_li...
Summarize the performance of a model on a test.
module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator call identifier argument_list identifier integer block express...
Retrieve a named key from peer relation `relation_name`.
module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block if_statement not_operator call identifier argument_list identifier identifier block continue_statement if_statement comparison_operator call attribute identifier identifier argument_list stri...
Generate each insertion dict that represents a valid subtotal.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list binary_operator binary_operator attribute identifier identifier string string_start string_content string_end identifier for_statement identifier call attribute identifie...
import_sub_module will mimic the function of importlib.import_module
module function_definition identifier parameters identifier block if_statement identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end string string_start string_content string_end if_sta...
Set PIP SSL certificate to installed conda certificate to avoid SSL errors
module function_definition identifier parameters identifier identifier identifier default_parameter identifier string string_start string_content string_end block if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier call attribute att...
Save the list of unique words to the master list
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier if_statement boolean_operator attribute identifier identifier call attribute attribute identifier identifier identifier argument_list block return_s...
Get a human readable label for a method given its name
module function_definition identifier parameters identifier identifier block function_definition identifier parameters identifier identifier block return_statement call attribute string string_start string_content string_end identifier argument_list keyword_argument identifier identifier keyword_argument identifier sub...
When the text inside the column is longer then the width, will split by space and continue on the next line.
module function_definition identifier parameters identifier block if_statement not_operator call attribute identifier identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list id...
Check if the file supplied as input exists.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list return_statement call attribute call attribute identifier identifier argument_list keyword_argument identifie...
Convert RGB arrays from mask canvas object back to boolean mask.
module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier block return_statement binary_operator binary_operator call identifier argument_list call identifier argument_list float binary_operator unary_operator identifier identifier call identifier argu...
returns value of D^l_mk as defined in allen, ottewill 97.
module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute attribute attribute attribute identifier identifier identifier identifier identifier identifier expression_statement assignment identifier call identifier argument_list attribute identifier i...
Create a list of process definitions.
module function_definition identifier parameters identifier block expression_statement assignment identifier string string_start string_content string_end return_statement call attribute string string_start string_end identifier argument_list list_comprehension call attribute identifier identifier argument_list identif...
Generates a random alphanumeric string
module function_definition identifier parameters default_parameter identifier none block try_statement block expression_statement call attribute identifier identifier argument_list if_statement comparison_operator identifier none block expression_statement assignment identifier subscript attribute identifier identifier...
Main entry point when the user runs the `trytravis` command.
module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end default_parameter identifier identifier default_parameter identifier none block expression_statement assignment tuple_pattern identifier identifier call identifier argument_list if_stat...
Launch a curl on CouchDB instance
module function_definition identifier parameters identifier default_parameter identifier dictionary default_parameter identifier list default_parameter identifier none default_parameter identifier none default_parameter identifier string string_start string_content string_end dictionary_splat_pattern identifier block e...
This function will perform the command -findany.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier conditional_expression subscript attribute identifier identifier identifier comparison_operator identifier attribute identifier identifier none if_statement not_operator identifier block if_statement ...
Checkout branch. Create it if necessary
module function_definition identifier parameters identifier block expression_statement assignment attribute attribute identifier identifier identifier false expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute attribute identifier id...
Configure the Flask WSGI app.
module function_definition identifier parameters identifier identifier block if_statement identifier block return_statement boolean_operator call attribute identifier identifier argument_list attribute identifier identifier return_statement attribute identifier identifier
Read only access to the read preference of this instance or session.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier false expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list subscript attribute identifier identifier string string_start string_content st...
Return true if post directory and post file both exist.
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end for_statement identifier identifier block if_statement not_operator comparison_operator identifier attr...
Make sure that the specified target only contains architectures that we know about.
module function_definition identifier parameters identifier block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier string string_start string_conten...
Use no more than two spaces after a period.