sequence stringlengths 731 13.6k | docstring stringlengths 11 171 |
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(module
(function_definition
(function_name_GetReportData) function_name_GetReportData
(parameters
(identifier_self) identifier_self
(identifier_get_report_args) identifier_get_report_args
(default_parameter
(identifier_token) identifier_token
(None) None
)default_param... | Filter the cron job approvals in the given timerange. |
(module
(function_definition
(function_name__convert_partition) function_name__convert_partition
(parameters
(identifier_partition) identifier_partition
)parameters
(block
(expression_statement
(assignment
(identifier_csvfile) identifier_csvfile
(call
... | Converts partition to resource dict ready to save to CKAN. |
(module
(function_definition
(function_name_gen_bisz) function_name_gen_bisz
(parameters
(identifier_src) identifier_src
(identifier_dst) identifier_dst
)parameters
(block
(return_statement
(call
(attribute
(identifier_ReilBuilder) identifier_ReilBuilder... | Return a BISZ instruction. |
(module
(function_definition
(function_name_getBinaryData) function_name_getBinaryData
(parameters
(identifier_self) identifier_self
(identifier_name) identifier_name
(default_parameter
(identifier_channel) identifier_channel
(None) None
)default_parameter
)paramete... | Returns a binary node |
(module
(function_definition
(function_name_gpg_version) function_name_gpg_version
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_cmd) identifier_cmd
(call
(identifier_flatten) identifier_flatten
(argument_list
... | Returns the GPG version |
(module
(function_definition
(function_name_create) function_name_create
(parameters
(identifier_cls) identifier_cls
(identifier_mp) identifier_mp
(identifier_part_number) identifier_part_number
(default_parameter
(identifier_stream) identifier_stream
(None) None
... | Create a new part object in a multipart object. |
(module
(function_definition
(function_name_read) function_name_read
(parameters
(identifier_self) identifier_self
(identifier_num_bytes) identifier_num_bytes
)parameters
(block
(expression_statement
(call
(attribute
(identifier_self) identifier_self
... | Reads data from the pyboard over the serial port. |
(module
(function_definition
(function_name__is_inline_definition) function_name__is_inline_definition
(parameters
(identifier_arg) identifier_arg
)parameters
(block
(return_statement
(boolean_operator
(boolean_operator
(call
(identifier_isinstan... | Returns True, if arg is an inline definition of a statement. |
(module
(function_definition
(function_name_client_ident) function_name_client_ident
(parameters
(identifier_self) identifier_self
)parameters
(block
(return_statement
(call
(attribute
(attribute
(attribute
(identifier_irc) identi... | Return the client identifier as included in many command replies. |
(module
(function_definition
(function_name_handle_netusb) function_name_handle_netusb
(parameters
(identifier_self) identifier_self
(identifier_message) identifier_message
)parameters
(block
(expression_statement
(assignment
(identifier_needs_update) identifier_nee... | Handles 'netusb' in message |
(module
(function_definition
(function_name_render) function_name_render
(parameters
(identifier_self) identifier_self
(identifier_data) identifier_data
(default_parameter
(identifier_accepted_media_type) identifier_accepted_media_type
(None) None
)default_parameter
... | Render `data` into JSON, returning a bytestring. |
(module
(function_definition
(function_name_remove_user) function_name_remove_user
(parameters
(identifier_self) identifier_self
(identifier_name) identifier_name
)parameters
(block
(expression_statement
(assignment
(identifier_user) identifier_user
(call
... | Remove a user from kubeconfig. |
(module
(function_definition
(function_name_copy) function_name_copy
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_result) identifier_result
(call
(attribute
(identifier_c... | Return a copy of the Primitive object. |
(module
(function_definition
(function_name__getPageInfo) function_name__getPageInfo
(parameters
(identifier_self) identifier_self
(identifier_pno) identifier_pno
(identifier_what) identifier_what
)parameters
(block
(if_statement
(boolean_operator
(attribute
... | Show fonts or images used on a page. |
(module
(function_definition
(function_name_convert_to_dict) function_name_convert_to_dict
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_out_dict) identifier_out_dict
(dictionary
)diction... | Convert the group object to an appropriate DICT |
(module
(function_definition
(function_name__lbdvrpmllpmbb) function_name__lbdvrpmllpmbb
(parameters
(identifier_self) identifier_self
(list_splat_pattern
(identifier_args) identifier_args
)list_splat_pattern
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwar... | Calculate l,b,d,vr,pmll,pmbb |
(module
(function_definition
(function_name_encode) function_name_encode
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_reading) identifier_reading
(subscript
(attribute
(i... | Turn this report into a serialized bytearray that could be decoded with a call to decode |
(module
(function_definition
(function_name_to_commit) function_name_to_commit
(parameters
(identifier_obj) identifier_obj
)parameters
(block
(if_statement
(comparison_operator
(attribute
(identifier_obj) identifier_obj
(identifier_type) identifier... | Convert the given object to a commit if possible and return it |
(module
(function_definition
(function_name_getset) function_name_getset
(parameters
(identifier_self) identifier_self
(identifier_key) identifier_key
(identifier_value) identifier_value
(keyword_separator
)keyword_separator
(default_parameter
(identifier_encoding) ... | Set the string value of a key and return its old value. |
(module
(function_definition
(function_name__post_filter) function_name__post_filter
(parameters
(identifier_search) identifier_search
(identifier_urlkwargs) identifier_urlkwargs
(identifier_definitions) identifier_definitions
)parameters
(block
(expression_statement
(a... | Ingest post filter in query. |
(module
(function_definition
(function_name_translate) function_name_translate
(parameters
(identifier_self) identifier_self
(identifier_instruction) identifier_instruction
)parameters
(block
(try_statement
(block
(expression_statement
(assignment
... | Return REIL representation of an instruction. |
(module
(function_definition
(function_name_save_existing_iam_env_vars) function_name_save_existing_iam_env_vars
(parameters
(identifier_self) identifier_self
)parameters
(block
(for_statement
(identifier_i) identifier_i
(list
(string_'AWS_ACCESS_KEY_ID') string_'... | Backup IAM environment variables for later restoration. |
(module
(function_definition
(function_name__check_error) function_name__check_error
(parameters
(identifier_response) identifier_response
)parameters
(block
(if_statement
(boolean_operator
(parenthesized_expression
(not_operator
(attribute
... | Raises an exception if the Spark Cloud returned an error. |
(module
(function_definition
(function_name_popitem) function_name_popitem
(parameters
(identifier_self) identifier_self
)parameters
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_item) identifier_item
(c... | Pop an item from the dict. |
(module
(function_definition
(function_name__bisect_interval) function_name__bisect_interval
(parameters
(identifier_a) identifier_a
(identifier_b) identifier_b
(identifier_fa) identifier_fa
(identifier_fb) identifier_fb
)parameters
(block
(if_statement
(compariso... | Conditional checks for intervals in methods involving bisection |
(module
(function_definition
(function_name_show) function_name_show
(parameters
(identifier_ctx) identifier_ctx
(identifier_component) identifier_component
)parameters
(block
(expression_statement
(assignment
(identifier_col) identifier_col
(subscript
... | Show the stored, active configuration of a component. |
(module
(function_definition
(function_name_fit) function_name_fit
(parameters
(identifier_self) identifier_self
(identifier_X) identifier_X
(default_parameter
(identifier_y) identifier_y
(None) None
)default_parameter
(dictionary_splat_pattern
(identifier... | Fits the model and generates the silhouette visualization. |
(module
(function_definition
(function_name_generate_input_template) function_name_generate_input_template
(parameters
(identifier_tool) identifier_tool
)parameters
(block
(expression_statement
(assignment
(identifier_template) identifier_template
(call
... | Generate an example input object for the given CWL process. |
(module
(function_definition
(function_name_host_in_set) function_name_host_in_set
(parameters
(identifier_ip) identifier_ip
(identifier_hosts) identifier_hosts
(identifier_nets) identifier_nets
)parameters
(block
(if_statement
(comparison_operator
(identifier... | Return True if given ip is in host or network list. |
(module
(function_definition
(function_name_mkconstraints) function_name_mkconstraints
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_constraints) identifier_constraints
(list
)list
)assignment
)expression_statemen... | Make constraint list for binary constraint problem. |
(module
(function_definition
(function_name_run) function_name_run
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_hosts) identifier_hosts
(call
(attribute
(attribute
... | xfer & run module on all matched hosts |
(module
(function_definition
(function_name_regex_lexer) function_name_regex_lexer
(parameters
(identifier_regex_pat) identifier_regex_pat
)parameters
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier... | generate token names' cache |
(module
(function_definition
(function_name_getCatalogPixels) function_name_getCatalogPixels
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_filenames) identifier_filenames
(call
(attribu... | Return the catalog pixels spanned by this ROI. |
(module
(function_definition
(function_name_results_to_csv) function_name_results_to_csv
(parameters
(identifier_query_name) identifier_query_name
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(expression_st... | Generate CSV from result data |
(module
(function_definition
(function_name__round_frac) function_name__round_frac
(parameters
(identifier_x) identifier_x
(identifier_precision) identifier_precision
)parameters
(block
(if_statement
(boolean_operator
(not_operator
(call
(a... | Round the fractional part of the given number |
(module
(function_definition
(function_name__is_on_import_statement) function_name__is_on_import_statement
(parameters
(identifier_self) identifier_self
(identifier_offset) identifier_offset
)parameters
(block
(expression_statement
(string_"Does this offset point to an import... | Does this offset point to an import statement? |
(module
(function_definition
(function_name__validate_granttype) function_name__validate_granttype
(parameters
(identifier_self) identifier_self
(identifier_path) identifier_path
(identifier_obj) identifier_obj
(identifier__) identifier__
)parameters
(block
(expression_st... | make sure either implicit or authorization_code is defined |
(module
(function_definition
(function_name_metrics) function_name_metrics
(parameters
(identifier_self) identifier_self
(identifier_name) identifier_name
)parameters
(block
(return_statement
(list_comprehension
(call
(identifier_MetricStub) identifier_M... | Return the metrics received under the given name |
(module
(function_definition
(function_name_copyChar) function_name_copyChar
(parameters
(identifier_len) identifier_len
(identifier_out) identifier_out
(identifier_val) identifier_val
)parameters
(block
(expression_statement
(assignment
(identifier_ret) ident... | append the char value in the array |
(module
(function_definition
(function_name_untranslated_policy) function_name_untranslated_policy
(parameters
(identifier_self) identifier_self
(identifier_default) identifier_default
)parameters
(block
(return_statement
(call
(attribute
(attribute
... | Get the policy for untranslated content |
(module
(function_definition
(function_name_convert_bboxes_to_albumentations) function_name_convert_bboxes_to_albumentations
(parameters
(identifier_bboxes) identifier_bboxes
(identifier_source_format) identifier_source_format
(identifier_rows) identifier_rows
(identifier_cols) identif... | Convert a list bounding boxes from a format specified in `source_format` to the format used by albumentations |
(module
(function_definition
(function_name_run_checked) function_name_run_checked
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_start_tim... | Print periodic status messages. |
(module
(function_definition
(function_name_render_koji) function_name_render_koji
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_phase) identifier_phase
(string_'prebuild_plugins') string_'prebuild... | if there is yum repo specified, don't pick stuff from koji |
(module
(function_definition
(function_name_perform) function_name_perform
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(comparison_operator
(attribute
(identifier_self) identifier_self
(identifier__file_size) iden... | Executes the current TONUpload object. |
(module
(function_definition
(function_name__end_clean) function_name__end_clean
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(await
(call
(attribute
(attribute
(identifier_self) identifie... | Must be called when the agent is closing |
(module
(function_definition
(function_name___handle_ping) function_name___handle_ping
(parameters
(identifier_self) identifier_self
(typed_parameter
(identifier__) identifier__
(type
(identifier_Ping) identifier_Ping
)type
)typed_parameter
)parameters
... | Handle a Ping message. Pong the backend |
(module
(function_definition
(function_name_default) function_name_default
(parameters
(identifier_self) identifier_self
(identifier_value) identifier_value
)parameters
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self... | Set the default parameter and regenerate the thumbnail link. |
(module
(function_definition
(function_name_get) function_name_get
(parameters
(identifier_self) identifier_self
(identifier_uri) identifier_uri
)parameters
(block
(if_statement
(call
(attribute
(identifier_uri) identifier_uri
(identifier_sta... | Get the content for the bodypart identified by the uri. |
(module
(function_definition
(function_name__hour_angle_to_hours) function_name__hour_angle_to_hours
(parameters
(identifier_times) identifier_times
(identifier_hourangle) identifier_hourangle
(identifier_longitude) identifier_longitude
(identifier_equation_of_time) identifier_equation... | converts hour angles in degrees to hours as a numpy array |
(module
(function_definition
(function_name_plot_data) function_name_plot_data
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(ide... | Add the data points to the plot. |
(module
(function_definition
(function_name__GetChunk) function_name__GetChunk
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_found_ref) identifier_found_ref
(None) None
)assignment
)e... | Fetches a chunk corresponding to the current offset. |
(module
(function_definition
(function_name_hasInfo) function_name_hasInfo
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_count) identifier_count
(call
(identifier_len) identifier_len
... | Will have information to write. |
(module
(function_definition
(function_name__parse_tol) function_name__parse_tol
(parameters
(identifier_rtol) identifier_rtol
(identifier_atol) identifier_atol
)parameters
(block
(if_statement
(comparison_operator
(identifier_rtol) identifier_rtol
(None) ... | Parse the tolerance keywords |
(module
(function_definition
(function_name_scan) function_name_scan
(parameters
(identifier_src) identifier_src
)parameters
(block
(assert_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_src) identifier_src
... | Scan scss from string and return nodes. |
(module
(function_definition
(function_name_fit_gaussian) function_name_fit_gaussian
(parameters
(identifier_x) identifier_x
(identifier_y) identifier_y
(identifier_yerr) identifier_yerr
(identifier_p0) identifier_p0
)parameters
(block
(try_statement
(block
... | Fit a Gaussian to the data |
(module
(function_definition
(function_name_to_dict) function_name_to_dict
(parameters
(identifier_self) identifier_self
)parameters
(block
(return_statement
(dictionary
(pair
(string_"name") string_"name"
(attribute
(identifier_self)... | Converts the table to a dict. |
(module
(function_definition
(function_name_generateRevision) function_name_generateRevision
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_revpath) identifier_revpath
(call
(attribute
... | Generates the revision file for this builder. |
(module
(function_definition
(function_name_auth_edit) function_name_auth_edit
(parameters
(identifier_name) identifier_name
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(expression_statement
(assig... | Interactively edits an authorization group. |
(module
(function_definition
(function_name_one_symbol_ops_str) function_name_one_symbol_ops_str
(parameters
(identifier_self) identifier_self
)parameters
(type
(identifier_str) identifier_str
)type
(block
(return_statement
(call
(attribute
(iden... | Regex-escaped string with all one-symbol operators |
(module
(function_definition
(function_name_serialize) function_name_serialize
(parameters
(typed_parameter
(identifier_graph) identifier_graph
(type
(identifier_BELGraph) identifier_BELGraph
)type
)typed_parameter
(identifier_csv) identifier_csv
(iden... | Serialize a graph to various formats. |
(module
(function_definition
(function_name_selectfalse) function_name_selectfalse
(parameters
(identifier_table) identifier_table
(identifier_field) identifier_field
(default_parameter
(identifier_complement) identifier_complement
(False) False
)default_parameter
)... | Select rows where the given field evaluates `False`. |
(module
(function_definition
(function_name_sbesselh2) function_name_sbesselh2
(parameters
(identifier_x) identifier_x
(identifier_N) identifier_N
)parameters
(block
(expression_statement
(string_"Spherical Hankel of the second kind") string_"Spherical Hankel of the second ki... | Spherical Hankel of the second kind |
(module
(function_definition
(function_name__get_services) function_name__get_services
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_serv) identifier_serv
(list
)list
)assignment
)expression_statement
(expre... | Returns a list with all connman services |
(module
(function_definition
(function_name_to_internal_value) function_name_to_internal_value
(parameters
(identifier_self) identifier_self
(identifier_data) identifier_data
)parameters
(block
(if_statement
(boolean_operator
(call
(identifier_isinstance... | Format the internal value. |
(module
(function_definition
(function_name__get_corenlp_version) function_name__get_corenlp_version
(parameters
)parameters
(block
(expression_statement
(string_"Return the corenlp version pointed at by CORENLP_HOME, or None") string_"Return the corenlp version pointed at by CORENLP_HOM... | Return the corenlp version pointed at by CORENLP_HOME, or None |
(module
(function_definition
(function_name__init_repo) function_name__init_repo
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(call
(attribute
(identifier_log) identifier_log
(identifier_debug) identifier_d... | create and initialize a new Git Repo |
(module
(function_definition
(function_name_prox_max) function_name_prox_max
(parameters
(identifier_X) identifier_X
(identifier_step) identifier_step
(default_parameter
(identifier_thresh) identifier_thresh
(integer_0) integer_0
)default_parameter
)parameters
(... | Projection onto numbers below `thresh` |
(module
(function_definition
(function_name__subsampling_sanity_check) function_name__subsampling_sanity_check
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_dxs) identifier_dxs
(call
(a... | Check for differing subsample factors. |
(module
(function_definition
(function_name__maybe_classify) function_name__maybe_classify
(parameters
(identifier_self) identifier_self
(identifier_y) identifier_y
(identifier_k) identifier_k
(identifier_cutoffs) identifier_cutoffs
)parameters
(block
(expression_statemen... | Helper method for classifying continuous data. |
(module
(function_definition
(function_name_updateUi) function_name_updateUi
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_index) identifier_index
(call
(attribute
(attrib... | Updates the interface to show the selection buttons. |
(module
(function_definition
(function_name__add_annots) function_name__add_annots
(parameters
(identifier_self) identifier_self
(identifier_layout) identifier_layout
(identifier_annots) identifier_annots
)parameters
(block
(if_statement
(identifier_annots) identifier_a... | Adds annotations to the layout object |
(module
(function_definition
(function_name_process) function_name_process
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_formdata) identifier_formdata
(None) None
)default_parameter
(default_parameter
(identifier_obj) identifier_ob... | Wrap the process method to store the current object instance |
(module
(function_definition
(function_name_ip_address) function_name_ip_address
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_s) identifier_s
(call
(attribute
(identifier_socket) identifier_socket
... | Get the IP address used for public connections. |
(module
(function_definition
(function_name_aslist) function_name_aslist
(parameters
(identifier_generator) identifier_generator
)parameters
(block
(expression_statement
(string_'Function decorator to transform a generator into a list') string_'Function decorator to transform a gen... | Function decorator to transform a generator into a list |
(module
(function_definition
(function_name_toc) function_name_toc
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_toc) identifier_toc
(list
)list
)assignment
)expression_stat... | Smart getter for Table of Content list. |
(module
(function_definition
(function_name_populate_local_sch_cache) function_name_populate_local_sch_cache
(parameters
(identifier_self) identifier_self
(identifier_fw_dict) identifier_fw_dict
)parameters
(block
(for_statement
(identifier_fw_id) identifier_fw_id
(id... | Populate the local cache from FW DB after restart. |
(module
(function_definition
(function_name__get_ipv4_from_binary) function_name__get_ipv4_from_binary
(parameters
(identifier_self) identifier_self
(identifier_bin_addr) identifier_bin_addr
)parameters
(block
(return_statement
(call
(attribute
(identifi... | Converts binary address to Ipv4 format. |
(module
(function_definition
(function_name_handler) function_name_handler
(parameters
(identifier_event) identifier_event
)parameters
(block
(function_definition
(function_name_decorator) function_name_decorator
(parameters
(identifier_fn) identifier_fn
)... | Signal decorator to allow use of callback functions as class decorators. |
(module
(function_definition
(function_name_memoryCheck) function_name_memoryCheck
(parameters
(identifier_vms_max_kb) identifier_vms_max_kb
)parameters
(block
(expression_statement
(assignment
(identifier_safety_factor) identifier_safety_factor
(float_1.2) floa... | Lookup vms_max using getCurrentVMSKb |
(module
(function_definition
(function_name_idxterms) function_name_idxterms
(parameters
(identifier_self) identifier_self
)parameters
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_terms) identifier_terms
... | List of index terms. |
(module
(function_definition
(function_name_show_all_prs) function_name_show_all_prs
(parameters
(identifier_self) identifier_self
)parameters
(block
(for_statement
(pattern_list
(identifier___) identifier___
(identifier_prs) identifier_prs
)pattern_list... | Log all PRs grouped by state. |
(module
(function_definition
(function_name_list_tools) function_name_list_tools
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_tools) identifier_tools
(list
)list
)assignment
... | Return list of tuples of all tools |
(module
(function_definition
(function_name_create_s3_session) function_name_create_s3_session
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_sess) identifier_sess
(call
(attribute
(identifier_requests) identifie... | Creates a session with automatic retries on 5xx errors. |
(module
(function_definition
(function_name_no_imls) function_name_no_imls
(parameters
(identifier_self) identifier_self
)parameters
(block
(return_statement
(call
(identifier_all) identifier_all
(generator_expression
(call
(attribute
... | Return True if there are no intensity measure levels |
(module
(function_definition
(function_name__txtinfo_to_python) function_name__txtinfo_to_python
(parameters
(identifier_self) identifier_self
(identifier_data) identifier_data
)parameters
(block
(expression_statement
(assignment
(attribute
(identifier_s... | Converts txtinfo format to python |
(module
(function_definition
(function_name_json) function_name_json
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_lines) identifier_lines
(list
)list
)assignment
)expressio... | Return a list of JSON objects output by this service. |
(module
(function_definition
(function_name__detect_sse3) function_name__detect_sse3
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(string_"Does this compiler support SSE3 intrinsics?") string_"Does this compiler support SSE3 intrinsics?"
... | Does this compiler support SSE3 intrinsics? |
(module
(function_definition
(function_name_create_db_schema) function_name_create_db_schema
(parameters
(identifier_cls) identifier_cls
(identifier_cur) identifier_cur
(identifier_schema_name) identifier_schema_name
)parameters
(block
(expression_statement
(assignment
... | Create Postgres schema script and execute it on cursor |
(module
(function_definition
(function_name_capture_output) function_name_capture_output
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_with_hook) identifier_with_hook
(True) True
)default_parameter
)parameters
(block
(expression_st... | Steal stream output, return them in string, restore them |
(module
(function_definition
(function_name_show_position) function_name_show_position
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_pos) identifier_pos
(attribute
(identifier_self) ide... | show map position click information |
(module
(function_definition
(function_name_installSite) function_name_installSite
(parameters
(identifier_self) identifier_self
(identifier_siteStore) identifier_siteStore
(identifier_domain) identifier_domain
(identifier_publicURL) identifier_publicURL
(default_parameter
... | Create the necessary items to run an HTTP server and an SSH server. |
(module
(function_definition
(function_name_fill_phenotype_calls) function_name_fill_phenotype_calls
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_phenotypes) identifier_phenotypes
(None) None
)default_parameter
(default_parameter
... | Set the phenotype_calls according to the phenotype names |
(module
(function_definition
(function_name__derive_stereographic) function_name__derive_stereographic
(parameters
)parameters
(block
(import_from_statement
(dotted_name
(identifier_sympy) identifier_sympy
)dotted_name
(dotted_name
(identifier_symbols)... | Compute the formulae to cut-and-paste into the routine below. |
(module
(function_definition
(function_name__value_data) function_name__value_data
(parameters
(identifier_self) identifier_self
(identifier_value) identifier_value
)parameters
(block
(return_statement
(call
(attribute
(identifier_codecs) identifier_code... | Parses binary and unidentified values. |
(module
(function_definition
(function_name_ft1file) function_name_ft1file
(parameters
(identifier_self) identifier_self
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(expression_statement
(assignmen... | return the name of the input ft1 file list |
(module
(function_definition
(function_name_extract) function_name_extract
(parameters
(identifier_data) identifier_data
(identifier_items) identifier_items
(default_parameter
(identifier_out_dir) identifier_out_dir
(None) None
)default_parameter
)parameters
(bl... | Extract germline calls for the given sample, if tumor only. |
(module
(function_definition
(function_name_plot) function_name_plot
(parameters
(identifier_self) identifier_self
(identifier_file_type) identifier_file_type
)parameters
(block
(expression_statement
(assignment
(identifier_samples) identifier_samples
(sub... | Call file_type plotting function. |
(module
(function_definition
(function_name_unpickle_file) function_name_unpickle_file
(parameters
(identifier_picklefile) identifier_picklefile
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(with_statement
... | Helper function to unpickle data from `picklefile`. |
(module
(function_definition
(function_name_node_created_handler) function_name_node_created_handler
(parameters
(identifier_sender) identifier_sender
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(if_statem... | send notification when a new node is created according to users's settings |
(module
(function_definition
(function_name__init_kws) function_name__init_kws
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(comparison_operator
(string_'fmtgo') string_'fmtgo'
(attribute
(identifier_self) identifier... | Fill default values for keyword args, if necessary. |
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