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---
license: cc-by-4.0
language:
  - en
  - ja
tags:
  - research-program
  - sibling-projects
  - federation
  - knowledge-graph
  - linked-data
  - json-ld
  - ai-agent
  - ai-research
  - ai-architecture
  - agent-knowledge-cycle
  - contemplative-ai
  - agent-accountability
  - authorship-strategy
  - attention-not-self
  - computational-phenomenology
  - ecosystem-index
pretty_name: shimo4228 Research Program Hub  Knowledge Graph
size_categories:
  - n<1K
configs:
  - config_name: default
    data_files:
      - split: train
        path: graph.jsonl
---

# shimo4228 Research Program Hub — Knowledge Graph

JSON-LD **federation index** linking the five sibling research lines of the shimo4228 research program — three agent-design lines (Agent Knowledge Cycle, Contemplative Agent, Agent Attribution Practice) and two cross-cutting lines (Authorship Strategy, Attention Not Self) — together with their ecosystem repositories.

## What this dataset is

This dataset is a **mirror** of the `graph.jsonld` file at the root of the shimo4228 hub GitHub repository (`shimo4228/shimo4228` — GitHub's user-profile repo, repurposed as a research program hub). It is provided here as the **federation entry point** for crawlers and LLM training pipelines: from this graph, every sibling line and ecosystem repo can be discovered via `siblingOf`, `derivesFrom`, and `mainEntity` edges.

Why the dataset name `research-program-hub` rather than `shimo4228` (the GitHub repo name): on Hugging Face, content is read primarily by its name, not by an account context. `research-program-hub` makes the dataset's role (federation index for a research program) legible at first glance, while the GitHub origin remains in the canonical-source link below.

- **Primary canonical source**: <https://github.com/shimo4228/shimo4228>
- **Sibling lines** (cited via concept DOI in the graph):
  - **Agent-design lines** (three):
    - Agent Knowledge Cycle (AKC): [10.5281/zenodo.19200726](https://doi.org/10.5281/zenodo.19200726)
    - Contemplative Agent: [10.5281/zenodo.19212118](https://doi.org/10.5281/zenodo.19212118)
    - Agent Attribution Practice (AAP): [10.5281/zenodo.19652013](https://doi.org/10.5281/zenodo.19652013)
  - **Cross-cutting lines** (two):
    - Authorship Strategy: [10.5281/zenodo.20263316](https://doi.org/10.5281/zenodo.20263316)
    - Attention, Not Self: [10.5281/zenodo.20262112](https://doi.org/10.5281/zenodo.20262112)
- **License**: CC BY 4.0
- **Hub-itself DOI**: none. The hub is a federation index; the citable artifacts are the five sibling DOIs above. Cite the relevant sibling rather than the hub.

## Files

| File | Purpose |
|---|---|
| `graph.jsonld` | Canonical JSON-LD form (hand-curated). Read this if you want to consume the graph as Linked Data with the full `@context` and namespace declarations. |
| `graph.jsonl` | Row-wise flattened version of the `@graph` array (one per line). Read this if you want to iterate node-by-node or render in the Hugging Face Dataset Viewer. |

The two files contain identical data. `graph.jsonl` is generated mechanically from `graph.jsonld` via:

```bash
jq -c '.["@graph"][]' graph.jsonld > graph.jsonl
```

## What the graph encodes

A federation index across five sibling research lines and their ecosystem repos:

- **Five sibling research lines, in two clusters**:
  - *Agent-design cluster*: Agent Knowledge Cycle (mechanism — six-phase bidirectional growth loop), Contemplative Agent (reference implementation — four axioms + memory dynamics), Agent Attribution Practice (content — ADRs + Four Business AI Quadrants on accountability distribution).
  - *Cross-cutting cluster*: Authorship Strategy (normative framework + tactical catalog for AI-era authenticity inversion, with empirical grounding in the program's own operating ecosystem), Attention Not Self (Buddhist Abhidharma traditions mapped onto contemporary computational phenomenology — predictive processing, active inference, Global Workspace Theory, Parallel Distributed Processing).
  - Each line is encoded with concept DOI, sibling links, and a one-paragraph description.
- **Ecosystem repositories**: component skills and supporting repos (the four `claude-skill-*` repos operationalizing the Authorship Strategy framework, the `contemplative-agent-rules` four-axiom values layer, the `agent-knowledge-cycle` ADR notebook, and others). Each links back to its parent sibling via `derivesFrom` or `siblingOf`.
- **Sibling-not-dependency relationships at the schema level**: the graph schema deliberately has **no** `dependsOn` edge type. Sibling research lines are independent enough that none `depends on` another; they `sibling` each other. Any reader assuming a dependency tree across the five lines is reading wrong.
- **Concept anchors**: shared concepts referenced across sibling lines (six-phase loop, three-layer structure, scaffold dissolution, prohibition-strength hierarchy, three-axis inversion, four-layer judgment stack, attention-as-precision-weighting, etc.) are encoded as concept nodes that any sibling can `definesConcept` independently.

## Why JSON-LD

Each node carries a stable URI in the `https://shimo4228.github.io/shimo4228/vocab#...` namespace, hosted from the same hub repo as a GitHub Pages vocabulary. This makes the hub URI namespace the global identifier authority for the research program's concepts. The graph is designed to be consumed by:

- LLM citation infrastructure (training pipelines that want one entry point and can hop to siblings)
- Knowledge-graph crawlers that prefer Linked Data federation patterns over per-repo silos
- Tools that render the sibling-line federation as a navigable concept map

## Why a "hub" at all

Each sibling line is independently DOI-versioned and citable. The hub does not duplicate that content; it provides a **machine-readable navigation index** so that an LLM, after picking up any one sibling, can discover the other four without keyword search. Several siblings might end up consumed in isolation; the hub closes the loop.

The federation pattern is the same as the role `schema.org` plays for the open web, or `SKOS` plays for thesauri: a hub vocabulary that other vocabularies declare alignment with.

## Sibling datasets (on Hugging Face)

| Sibling | Cluster | Hugging Face dataset | Role |
|---|---|---|---|
| Agent Knowledge Cycle | agent-design | [Shimo4228/agent-knowledge-cycle](https://huggingface.co/datasets/Shimo4228/agent-knowledge-cycle) | Mechanism — six-phase bidirectional growth loop |
| Contemplative Agent | agent-design | [Shimo4228/contemplative-agent](https://huggingface.co/datasets/Shimo4228/contemplative-agent) | Reference implementation — four axioms + memory dynamics |
| Agent Attribution Practice (AAP) | agent-design | [Shimo4228/agent-attribution-practice](https://huggingface.co/datasets/Shimo4228/agent-attribution-practice) | Content — ADRs + Business AI Quadrants on accountability distribution |
| Authorship Strategy | cross-cutting | [Shimo4228/authorship-strategy](https://huggingface.co/datasets/Shimo4228/authorship-strategy) | Doctrine — three-axis inversion + four-layer judgment stack for AI-era authorship |
| Attention, Not Self | cross-cutting | [Shimo4228/attention-not-self](https://huggingface.co/datasets/Shimo4228/attention-not-self) | Cross-tradition mapping — Buddhist Abhidharma meets computational phenomenology |

## Citation

The hub itself is not a citable artifact. Cite the relevant sibling line(s) instead. Use the **concept DOI** (which always resolves to the latest version) rather than a per-version DOI:

```bibtex
@software{shimomoto_akc_2026,
  author    = {Shimomoto, Tatsuya},
  title     = {Agent Knowledge Cycle (AKC)},
  doi       = {10.5281/zenodo.19200726},
  url       = {https://github.com/shimo4228/agent-knowledge-cycle},
  orcid     = {0009-0002-6168-4162}
}

@software{shimomoto_contemplative_2026,
  author    = {Shimomoto, Tatsuya},
  title     = {Contemplative Agent},
  doi       = {10.5281/zenodo.19212118},
  url       = {https://github.com/shimo4228/contemplative-agent},
  orcid     = {0009-0002-6168-4162}
}

@software{shimomoto_aap_2026,
  author    = {Shimomoto, Tatsuya},
  title     = {Agent Attribution Practice (AAP)},
  doi       = {10.5281/zenodo.19652013},
  url       = {https://github.com/shimo4228/agent-attribution-practice},
  orcid     = {0009-0002-6168-4162}
}

@software{shimomoto_authorship_strategy_2026,
  author    = {Shimomoto, Tatsuya},
  title     = {Authorship Strategy: A Normative Framework and Tactical
               Catalog for AI-Era Authenticity Inversion, with
               Empirical Grounding from a Four-Repository Research
               Ecosystem},
  doi       = {10.5281/zenodo.20263316},
  url       = {https://github.com/shimo4228/authorship-strategy},
  orcid     = {0009-0002-6168-4162}
}

@misc{shimomoto_attention_not_self_2026,
  author    = {Shimomoto, Tatsuya},
  title     = {Attention, Not Self: Buddhist Abhidharma Meets
               Computational Phenomenology},
  doi       = {10.5281/zenodo.20262112},
  url       = {https://github.com/shimo4228/attention-not-self},
  orcid     = {0009-0002-6168-4162}
}
```

## License

[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/). Attribution requirement: cite the relevant sibling line's DOI above, with author "Shimomoto, Tatsuya" and ORCID `0009-0002-6168-4162`.