document_id stringlengths 8 12 | document stringlengths 50 3.21k | split stringclasses 1
value |
|---|---|---|
d_bash_1700 | ---
+++
@@ -6,6 +6,7 @@
# Install Binaries
brew install 'git'
+brew install 'git-lfs'
brew install 'hub'
brew install 'tree'
brew install 'mackup'
@@ -13,6 +14,7 @@
brew install 'm-cli'
brew install 'openssl'
brew install 'python'
+brew install 'java'
brew install 'ruby'
brew install 'sqlite'
brew instal... | bash |
d_bash_1701 | ---
+++
@@ -2,6 +2,7 @@
HEADERS=" \
channel.h \
+ content.h \
stream.h"
srcdir=../telepathy-farsight/ | bash |
d_bash_1702 | ---
+++
@@ -4,4 +4,4 @@
for i in $(ls lib/*|grep ".jar"); do
libpath=$( echo "$i:$libpath");
done
-exec java -server -Xms32M -cp "$(echo $libpath)build/jar/Snap2.jar" org.rostlab.gemudb.Startup
+exec java -server -Xms32M -Djava.net.preferIPv4Stack=true -cp "$(echo $libpath)build/jar/Snap2.jar" org.rostlab.gemud... | bash |
d_bash_1703 | ---
+++
@@ -2,6 +2,7 @@
if [ "$1" = "" ]; then
echo "Must supply alert ID to acknowledge"
+ exit 1
else
ALERTID=$1
fi | bash |
d_bash_1704 | ---
+++
@@ -1,4 +1,6 @@
#!/bin/bash
+
+export CPPFLAGS=-I$PREFIX/include
./configure --prefix=$PREFIX
make -j${CPU_COUNT} | bash |
d_bash_1705 | ---
+++
@@ -9,11 +9,10 @@
rm -f src/components/objects/_generated_exceptions.inc
rm -f src/components/objects/_generated_interfaces.inc
-rm -f include/compiler/lex.yy.h
-rm -f include/vm/_generated_vm_opcodes.h
-rm -f include/objects/_generated_exceptions.h
-rm -f include/objects/_generated_interfaces.h
-rm -f in... | bash |
d_bash_1706 | ---
+++
@@ -9,13 +9,13 @@
# Run basic unit tests that don't require web100.
LD_LIBRARY_PATH=/home/iupui_ndt/build/lib NDT_HOSTNAME=localhost \
-./iupui_ndt/ndt-3.7.0.1/src/web100_testoptions_unit_tests
+./iupui_ndt/ndt/src/web100_testoptions_unit_tests
LD_LIBRARY_PATH=/home/iupui_ndt/build/lib NDT_HOSTNAME=loc... | bash |
d_bash_1707 | ---
+++
@@ -17,7 +17,19 @@
fi
# Add bootstrap to bash profile.
-echo -e "# .dotstar bootstrap\n[[ -r ~/.dot-star/bash/.bash_profile ]] && . ~/.dot-star/bash/.bash_profile" >> "$HOME/.bash_profile"
+echo -e "# .dotstar bootstrap\n[[ -r ~/.bashrc ]] && source ~/.bashrc" >> "$HOME/.bash_profile"
+
+# Find existing b... | bash |
d_bash_1708 | ---
+++
@@ -28,3 +28,9 @@
alias ae="ls -a"
# [a]ll files visible to common [u]ser (e.g. in Finder)
alias au="ls"
+
+### Scala
+# Run sbt with Java 7 (useful for Coursera course)
+alias sbt7="sbt -java-home `/usr/libexec/java_home -v 1.7`"
+
+ | bash |
d_bash_1709 | ---
+++
@@ -11,4 +11,6 @@
exit 0 # There is no crontab for root.
fi
+cp /usr/local/ub_tools/cpp/cifs_keepalive.sh /usr/local/bin
+
grep --quiet --fixed-strings ${CIFS_KEEP_ALIVE} ${root_crontab} || echo "0 * * * * \"${CIFS_KEEP_ALIVE}\"" >> ${root_crontab} | bash |
d_bash_1710 | ---
+++
@@ -21,7 +21,7 @@
rm "$FAILED"
# print info
-if [ -n "$APPVEYOR" ] || [ -n "$PRINT_LOGS" ]; then
+if [ -n "$CI" ] || [ -n "$PRINT_LOGS" ]; then
find logs/ -name '*.log' -not -name 'summary.log' -print0 | while IFS= read -r -d '' file; do
printf '%s\n' "$file"
cat "$file" | bash |
d_bash_1711 | ---
+++
@@ -16,7 +16,8 @@
FORMAT_OUT=${TMPDIR:-/tmp}/clang-format-diff.out
# Run on all files.
-find . -name "*.h" -o -name "*.cc" | xargs -P2 clang-format -i
+find . -name "*.h" -o -name "*.cc" | grep -v third_party/|external_libs/ \
+ | xargs -P2 clang-format -i
# Check if we got any diff
git diff > ${FORM... | bash |
d_bash_1712 | ---
+++
@@ -17,9 +17,13 @@
cat ${filter} > ${output}
+H2DEF=
+[ -z "${H2DEF}" -a -f /usr/share/pygtk/2.0/codegen/h2def.py ] && H2DEF=/usr/share/pygtk/2.0/codegen/h2def.py
+[ -z "${H2DEF}" -a -f /usr/lib/python2.5/site-packages/gtk-2.0/codegen/h2def.py ] && H2DEF=/usr/lib/python2.5/site-packages/gtk-2.0/codegen/h... | bash |
d_bash_1713 | ---
+++
@@ -11,6 +11,8 @@
cd src
composer install --no-interaction --optimize-autoloader --no-dev
npm install --production
+
+npm run production
php artisan cache:clear
php artisan config:clear | bash |
d_bash_1714 | ---
+++
@@ -35,6 +35,7 @@
let n=n+1
if [ $n -ge $count ] ;then
+ echo "skip $sport1"
break;
fi
@@ -45,7 +46,7 @@
$DUALPORT /dev/$sport1 /dev/$sport2 -b $BAUDRATE -l $LOOP_COUNT
if [ $? -ne 0 ];then
result=1
- echo "ERROR on $sport1 and $sport2"
+ ech... | bash |
d_bash_1715 | ---
+++
@@ -35,5 +35,5 @@
rm -f tmp-nuget/*.symbols.nupkg
echo "Remaining task - push nuget files:"
-echo "cd tmp-nupkg"
+echo "cd tmp-nuget"
echo "for pkg in *.nupkg; do dotnet nuget push -s https://api.nuget.org/v3/index.json -k API_KEY_HERE \$pkg; done" | bash |
d_bash_1716 | ---
+++
@@ -4,7 +4,5 @@
$ROOT_DIR/cloudera-framework-initialise.sh
-export CDH_HADOOP_HOME=$PARCELS_ROOT/$CDH_DIRNAME/lib/hadoop
-
-export HIVE_AUX_JARS_PATH=$ROOT_DIR/../lib
-
+export HIVE_AUX_JARS_PATH="$ROOT_DIR/../lib"
+export HADOOP_CLASSPATH="$HADOOP_CLASSPATH":"$(echo -n $(ls -m $ROOT_DIR/lib/jar/*.jar)|s... | bash |
d_bash_1717 | ---
+++
@@ -1,5 +1,6 @@
#!/bin/sh
+$(type glibtoolize >/dev/null 2>&1) && LIBTOOLIZE=${LIBTOOLIZE:-glibtoolize}
aclocal -I m4 && \
${LIBTOOLIZE:-libtoolize} --automake --force && \
autoheader --force && | bash |
d_bash_1718 | ---
+++
@@ -4,16 +4,15 @@
set -e
-function cd_workspace() {
- cd $(dirname $(readlink -f $0)) > /dev/null
-}
+ROOT_WORKSPACE=$(cd `dirname $0` && pwd -P)
function license_check() {
# License information must be in every source file
- cd_workspace
+ cd $ROOT_WORKSPACE
- tmpfile=`mktemp`
- find * -not... | bash |
d_bash_1719 | ---
+++
@@ -15,6 +15,19 @@
machine="$1"
port="$2"
ssh $machine -N -L "${port}:localhost:${port}"
+}
+
+function tunnel() {
+ machine="$1"
+ port_local="$2"
+ port_remote="$2"
+
+ if [ ! -z "$3" ]; then
+ port_remote="$3"
+ fi;
+
+ echo "ssh $machine -N -L \"${port_local}:localhost:${port_remote}\""
... | bash |
d_bash_1720 | ---
+++
@@ -6,7 +6,7 @@
_run_default() {
# Commands
- $DEBUG sudo apt-get install -y --allow redis-server
+ $DEBUG sudo apt-get install --allow redis-server
}
_run_() { | bash |
d_bash_1721 | ---
+++
@@ -19,4 +19,4 @@
#*******************************************************************************
MONGO_PATH="/usr/bin"
-${MONGO_PATH}/mongod -dbpath ../data/mongodb --smallfiles > ./mongod_$(date +"%s").log 2>&1
+${MONGO_PATH}/mongod -dbpath ../data/mongodb --smallfiles > ../log/mongod_$(date +"%s").log... | bash |
d_bash_1722 | ---
+++
@@ -20,7 +20,7 @@
conda install -y -c omnia mdtraj
conda install -y scikit-learn
conda install -y setuptools
-conda install -y -c anaconda keras=1.1.1
+conda install -y keras=1.1.1
conda install -y -c conda-forge protobuf=3.1.0
yes | pip install $tensorflow==0.12.1
yes | pip install nose | bash |
d_bash_1723 | ---
+++
@@ -8,4 +8,4 @@
database_uri="$DATEMO_DB_URI?aws_access_key_id=$aws_access_key&aws_secret_key=$aws_secret_access_key"
echo "Starting datemo..."
-java -DDATABASE.URI=$database_uri -jar /datemo-0.1.1-SNAPSHOT-standalone.jar
+java -DDATABASE.URI=$database_uri -jar /datemo-0.1.1-standalone.jar | bash |
d_bash_1724 | ---
+++
@@ -13,20 +13,21 @@
cd $TAGLIB_VERSION/
TAGLIB_TOOLCHAIN="
-SET(CMAKE_SYSTEM_NAME Windows)
-SET(CMAKE_C_COMPILER $HOST-gcc)
-SET(CMAKE_CXX_COMPILER $HOST-g++)
-SET(CMAKE_RC_COMPILER $HOST-windres)
+set(CMAKE_SYSTEM_NAME Windows)
+set(CMAKE_C_COMPILER $HOST-gcc)
+set(CMAKE_CXX_COMPILER $HOST-g++)
+set(CMAK... | bash |
d_bash_1725 | ---
+++
@@ -7,7 +7,7 @@
cd mapserver-7.0.0
mkdir build
cd build
-cmake -DWITH_KML=1 -DWITH_PHP=1 -DWITH_FCGI=0 -DWITH_SVGCAIRO=1 ..
+cmake -DWITH_KML=1 -DWITH_PHP=1 -DWITH_FCGI=0 -DWITH_SVGCAIRO=0 -DWITH_HARFBUZZ=0 -DWITH_FRIBIDI=0 ..
make
sudo make install
cd ../../ | bash |
d_bash_1726 | ---
+++
@@ -11,3 +11,10 @@
gnuman="$HOME/homebrew/opt/coreutils/libexec/gnuman:$HOME/homebrew/share/man"
MANPATH="${MANPATH/$gnuman:/}" man "$@"
}
+
+with-brew-env () {
+ PKG_CONFIG_PATH="$PKG_CONFIG_PATH $HOME/homebrew/opt/libxml2/lib/pkgconfig" \
+ LDFLAGS="$LDFLAGS -L$HOME/homebrew/opt/libxml2/lib -L$HO... | bash |
d_bash_1727 | ---
+++
@@ -15,7 +15,7 @@
CLASSPATH="\
../../../../../../bin:\
-../../../../../../../app/bin:\
+../../../../../../../app/bin/classes:\
../../../../../../libs/protobuf-java-2.3.0.jar\
"
| bash |
d_bash_1728 | ---
+++
@@ -22,7 +22,7 @@
${RESOURCES_ARTIFACTS_MINIA_EXECUTABLE}/minia ${TEMPFILE} 25 3 3000000000 unused
# copy minia output file to specified location
- cp contigs.fa ${OUTPUT}
+ cp unused.contigs.fa ${OUTPUT}
}
| bash |
d_bash_1729 | ---
+++
@@ -23,7 +23,5 @@
esac
# Setup NVM
-if [[ -n $brew_prefix && -f $brew_prefix/nvm.sh ]]; then
- NVMSH=$brew_prefix/nvm.sh
- export NVM_DIR=~/.nvm
-fi
+export NVM_DIR="~/.nvm"
+[ -s "$NVM_DIR/nvm.sh" ] && . "$NVM_DIR/nvm.sh" # This loads nvm | bash |
d_bash_1730 | ---
+++
@@ -3,7 +3,7 @@
TEST_DIR=$2
test_apk() {
- RESULTS_DIR=$1_$BUILD_ID
+ RESULTS_DIR=$1_${BUILD_ID}
gcloud firebase test android run \
--type instrumentation \
@@ -12,14 +12,18 @@
--device model=Nexus6P,version=27,locale=en_US,orientation=portrait \
--timeout 30m \
--results-b... | bash |
d_bash_1731 | ---
+++
@@ -3,7 +3,7 @@
compiler_rt_revision=release_60
libcxx_revision=release_60
polly_revision=release_60
-ndk_version=android-ndk-r17
+ndk_version=android-ndk-r18
clang_repository=http://llvm.org/git/clang.git
llvm_repository=http://llvm.org/git/llvm.git | bash |
d_bash_1732 | ---
+++
@@ -15,4 +15,4 @@
# We assume that email to the current system user will somehow reach the right
# human eyes
-tail ${build}.log | sed 's/.*\r//' | mail -s "${subject}" $(cat ~/.forward)
+tail -n 20 ${build}.log | sed 's/.*\r//' | mail -s "${subject}" $(cat ~/.forward) | bash |
d_bash_1733 | ---
+++
@@ -17,4 +17,4 @@
# TODO: Support for appending to this list from outside
PACKAGES=(vim curl wget man-db bash-completion python-software-properties ca-certificates sudo nfs-common)
-utils.lxc.attach yum install install ${PACKAGES[*]} -y
+utils.lxc.attach yum install ${PACKAGES[*]} -y | bash |
d_bash_1734 | ---
+++
@@ -1,5 +1,5 @@
# From https://github.com/robbyrussell/oh-my-zsh/blob/master/themes/robbyrussell.zsh-theme
-local ret_status="%(?:%{$fg_bold[green]%}➜ :%{$fg_bold[red]%}➜ %s)"
+local ret_status="%(?:%{$fg_bold[green]%}❯ :%{$fg_bold[red]%}❯ %s)"
PROMPT='${ret_status}%{$fg_bold[green]%}%p %{$fg[cyan]%}%c %{$f... | bash |
d_bash_1735 | ---
+++
@@ -1,3 +1,4 @@
#!/bin/bash
-$SPLUNK_HOME/bin/splunk cmd node $(dirname $0)/app/app.js
+current_dir=$(dirname "$0")
+"$SPLUNK_HOME/bin/splunk" cmd node "$current_dir/app/app.js" | bash |
d_bash_1736 | ---
+++
@@ -1,15 +1,20 @@
#!/bin/sh
+
+SIPVER="4.16.9"
+PYQTVER="5.5.1"
+
cd ..
-wget http://sourceforge.net/projects/pyqt/files/sip/sip-4.14.6/sip-4.14.6.tar.gz
-tar -xvf sip-4.14.6.tar.gz
-cd sip-4.14.6
+wget "https://sourceforge.net/projects/pyqt/files/sip/sip-${SIPVER}/sip-${SIPVER}.tar.gz"
+tar -xvf "sip-${SIP... | bash |
d_bash_1737 | ---
+++
@@ -7,6 +7,7 @@
openssl rsa -in /etc/{{name}}/{{name}}.rsa -pubout > /etc/{{name}}/{{name}}.rsa.pub
chown {{name}}:{{name}} /etc/{{name}}/{{name}}.rsa*
+ systemctl daemon-reload
systemctl enable {{name}}
systemctl enable {{name}}.socket
systemctl -q try-reload-or-restart nginx
@@ -18,12 +19,13 @@... | bash |
d_bash_1738 | ---
+++
@@ -14,4 +14,6 @@
-statsPrefix="${CLOUD_APP}.${CLOUD_DEV_PHASE:-${CLOUD_ENVIRONMENT}}.${EC2_REGION}.${CLOUD_AUTO_SCALE_GROUP##*-}" \
-scoopURL="${SCOOP_URL}" \
-databaseURL="${INGESTER_DB_URL}" \
- -manifestBucketPrefix="rsingester-manifests"
+ -manifestBucketPrefix="rsingester-manifests" \
+ -loa... | bash |
d_bash_1739 | ---
+++
@@ -3,6 +3,8 @@
if [[ ! "$SSH_TTY" ]] && is_osx; then
export EDITOR='mvim -v'
export LESSEDIT='mvim -v ?lm+%ln -- %f'
+ alias vi='mvim -v'
+ alias vim='mvim -v'
else
export EDITOR='vim'
fi | bash |
d_bash_1740 | ---
+++
@@ -9,6 +9,8 @@
node_modules+=('bower@^1.6.4')
node_modules+=('ember-cli@^1.13.12')
+node_modules+=('grunt-cli@^0.1.13')
+node_modules+=('gulp@^3.9.0')
node_modules+=('standard@^5.3.1')
npm install --global ${node_modules} | bash |
d_bash_1741 | ---
+++
@@ -1 +1,6 @@
-export JAVA_HOME="/usr/java/latest"
+# Use alternatives configuration if it's available, otherwise assume /usr/java/latest is correct
+if [ -a /etc/alternatives/java_sdk ] ; then
+ export JAVA_HOME="/etc/alternatives/java_sdk"
+else
+ export JAVA_HOME="/usr/java/latest"
+fi | bash |
d_bash_1742 | ---
+++
@@ -1,4 +1,6 @@
#!/usr/bin/env bash
. functions.sh
sh ../scripts/copy_files.sh
+install_rvm
+install_nvm
setup.sh | bash |
d_bash_1743 | ---
+++
@@ -7,6 +7,21 @@
vim +PluginInstall +qall
# Command-T requires compiling against the system Ruby
+# If there are issues with Vim and Ruby, make the asdf system ruby point to
+# the latest brew-installed version of Ruby:
+# $ brew link --overwrite ruby
+#
+# Install process when new versions of brew vim ar... | bash |
d_bash_1744 | ---
+++
@@ -1,5 +1,5 @@
#!/bin/sh -e
-# Format output of alias print dump into more readable format
+# Format output of aliases for z shell
awk -F= 'BEGIN {
TABLE_FMT = "%-21s | %-59s"; | bash |
d_bash_1745 | ---
+++
@@ -3,7 +3,7 @@
set -e
set -o pipefail
-if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
+if [[ $(uname) == "Linux" ]]; then
git clone --depth 1 https://github.com/kylef/swiftenv.git ~/.swiftenv
export SWIFTENV_ROOT="$HOME/.swiftenv"
export PATH="$SWIFTENV_ROOT/bin:$SWIFTENV_ROOT/shims:$PATH"
@@... | bash |
d_bash_1746 | ---
+++
@@ -8,11 +8,15 @@
mkdir -p var/cache var/log
if [ "$1" = 'php-fpm' ] || [ "$1" = 'php' ] || [ "$1" = 'bin/console' ]; then
- echo "Waiting for db to be ready..."
- bin/console ilios:wait-for-database
- echo "The db is now ready and reachable"
- bin/console cache:warmup
- bin/console doctrine:migrations:mi... | bash |
d_bash_1747 | ---
+++
@@ -5,7 +5,7 @@
set -e
export MANTA_KEY_ID=55:5e:9a:bc:42:59:df:cb:ad:00:54:f6:59:53:20:83
-export MANTA_USER=isaacs
+export MANTA_USER=npm
export MANTA_URL=https://us-east.manta.joyent.com
export CDPATH=
@@ -30,7 +30,7 @@
gzfile="${file}"
fi
d=$(date '+%Y-%m-%d-%s')
- mput -f $gzf... | bash |
d_bash_1748 | ---
+++
@@ -1,5 +1,5 @@
#!/bin/bash
-#
+
cd "$(dirname "$0")"
git pull
@@ -9,7 +9,7 @@
rsync --exclude ".DS_Store" -av ./public/ ~
echo
- for file in $(find private/ -type f -exec ls {} \; 2> /dev/null | sed 's/private\///'); do
+ for file in $(find private -type f -exec ls {} \; 2> /dev/null |... | bash |
d_bash_1749 | ---
+++
@@ -10,7 +10,7 @@
# https://github.com/l0b0/tilde/issues
#
# COPYRIGHT
-# Copyright (C) 2011 Victor Engmark
+# Copyright (C) 2011-2012 Victor Engmark
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public... | bash |
d_bash_1750 | ---
+++
@@ -11,22 +11,23 @@
# Best solution likely involves generating the *.d.ts typedefs when building /src/* and correctly
# symlinking these built files to the test directory, before building the tests.
echo 'Testing DataLab server backend...';
+
# Copy node .ts files to test.
cp -r "$server_root/src/node" "... | bash |
d_bash_1751 | ---
+++
@@ -1,10 +1,7 @@
#!/bin/bash -x
bundle install --path "/home/jenkins/bundles/${JOB_NAME}" --deployment
-RAILS_ENV=test bundle exec rake db:force_close_open_connections
-RAILS_ENV=test bundle exec rake db:reset
-
-RAILS_ENV=test bundle exec rake db:schema_load
+RAILS_ENV=test bundle exec rake db:test:prepa... | bash |
d_bash_1752 | ---
+++
@@ -7,7 +7,7 @@
#wget_retry -nv https://github.com/arq5x/bedtools2/archive/v2.25.0.tar.gz
wget_retry -nv http://$NIC_MIRROR/pub/sci/molbio/chipster/dist/tools_extras/bedtools_v2.25.0.tar.gz
- tar xf v2.25.0.tar.gz
+ tar xf bedtools_v2.25.0.tar.gz
cd bedtools2-2.25.0
make clean
make all | bash |
d_bash_1753 | ---
+++
@@ -1,4 +1,12 @@
#!/usr/bin/env bash
+
+header() {
+ echo "--- $1 ---"
+}
+
+run-suite() {
+ node_modules/.bin/mocha -b -t 10000
+}
set -e
@@ -7,6 +15,13 @@
false
fi
+header 'Linter'
scripts/run-linter.sh
-exec node_modules/.bin/mocha -b -t 10000
+header 'Node.js: (default)'
+run-suite
... | bash |
d_bash_1754 | ---
+++
@@ -1,4 +1,7 @@
#!/bin/sh
+# Test 11 - test for DNSKEY RRset answer size. The full answer packet
+# of the DNSKEY rrset should be below the IPv6 fragmentation payload
+# limit (1232 byte)
maxsize=1232
replysize=$(dig ${1} dnskey +dnssec | grep ";; MSG SIZE" | cut -d " " -f 6)
if [ "${replysize}" -le "${ma... | bash |
d_bash_1755 | ---
+++
@@ -3,3 +3,8 @@
# Ruby JRuby in 1.9 mode
export JRUBY_OPTS='--1.9'
+
+# Use custom Java 7 install (http://goo.gl/P8gO1)
+if [[ -d "/Library/Java/JavaVirtualMachines/1.7.0.jdk/Contents/Home" ]]; then
+ export JAVA_HOME="/Library/Java/JavaVirtualMachines/1.7.0.jdk/Contents/Home"
+fi | bash |
d_bash_1756 | ---
+++
@@ -4,13 +4,9 @@
total_words=${#words}
if [[ $total_words -eq 2 ]]; then
- completions=$'compile\nconfig\ndeps\ninit\nsetup\nupdate'
- elif [[ $total_words -eq 3 ]]; then
- if [[ $words[2] = 'config' ]]; then
- completions='update'
- elif [[ $words[2] = 'deps' ]]; then
- completions='update'
- f... | bash |
d_bash_1757 | ---
+++
@@ -10,7 +10,7 @@
cd nihongoparserd
mkdir build
cd build
-cmake ..
+cmake .. && cmake ..
make
#Copy binary to system-wide location | bash |
d_bash_1758 | ---
+++
@@ -8,4 +8,5 @@
ros-kinetic-ros-control\
ros-kinetic-ros-controllers\
ros-kinetic-teleop-twist-keyboard\
- ros-kinetic-velodyne-gazebo-plugins
+ ros-kinetic-velodyne-gazebo-plugins\
+ ros-kinetic-pointcloud-to-laserscan | bash |
d_bash_1759 | ---
+++
@@ -2,7 +2,7 @@
set -ex -o pipefail
BCBIO_VERSION="1.0.7a"
-BCBIO_REVISION="70cbf03"
+BCBIO_REVISION="67db27a"
NS="quay.io/bcbio"
TAG="${BCBIO_VERSION}-${BCBIO_REVISION}"
| bash |
d_bash_1760 | ---
+++
@@ -2,7 +2,7 @@
set -eux
-BOOST_VERSIONS=(1.58.0 1.59.0 1.60.0 1.61.0 1.62.0 1.63.0 1.64.0 1.65.1)
+BOOST_VERSIONS=(1.58.0 1.59.0 1.60.0 1.61.0 1.62.0 1.63.0 1.64.0 1.65.1 1.66.0)
BOOST_LIBRARIES="chrono,date_time,python,system,test,thread"
BUILD_ROOT=/tmp/boosts | bash |
d_bash_1761 | ---
+++
@@ -1,4 +1,4 @@
function mysql_reload() {
- launchctl unload ~/Library/LaunchAgents/homebrew.mxcl.mysql.plist
- launchctl load ~/Library/LaunchAgents/homebrew.mxcl.mysql.plist
+ launchctl unload ~/Library/LaunchAgents/homebrew.mxcl.mysql55.plist
+ launchctl load ~/Library/LaunchAgents/homebrew.mxcl.mysql... | bash |
d_bash_1762 | ---
+++
@@ -4,7 +4,7 @@
{
# local shopt_backup=$(shopt -p globstar)
# shopt -s globstar
- for bindir in ~/tools/*/bin;do
+ for bindir in ~/tools/*/bin ~/.local/bin;do
if [[ -d $bindir ]] && [[ "$PATH" != *$bindir* ]];then
export PATH=$bindir:$PATH
fi | bash |
d_bash_1763 | ---
+++
@@ -9,3 +9,4 @@
export OCL_API_TOKEN=$2
export OCL_ANON_API_TOKEN=$2
nohup grunt serve > nohup.out 2>&1 &
+echo "from django.contrib.auth.models import User; user = User.objects.create_superuser('admin', 'paynejd@gmail.com', 'Root123') if (User.objects.filter(username='root').count() < 1) else None" | pyth... | bash |
d_bash_1764 | ---
+++
@@ -3,7 +3,7 @@
cd /project/live/${ENV}/k8s/kube-system/helm-tls
echo "[helm-tls] Pulling helm-tls TF state..."
-state=$(terragrunt state pull 2> /dev/null | jq -r '.modules[].resources | select(length > 0)')
+state=$(terragrunt state pull 2> /dev/null | jq -r ".modules[].resources | select(length > 0)")
... | bash |
d_bash_1765 | ---
+++
@@ -8,10 +8,10 @@
echo "Installing deps for OSX"
if [ $PYTHON_VERSION == "2.7" ]; then
CONDA_VER='2'
- elif [ $PYTHON_VERSION == "3.6" ]; then
+ elif [ $PYTHON_VERSION == "3.7" ]; then
CONDA_VER='3'
else
- echo "Conda only supports 2.7 and 3.6"
+ echo "Miniconda only supports 2.7 an... | bash |
d_bash_1766 | ---
+++
@@ -2,7 +2,7 @@
thirdparty_module_name='KWIML'
-upstream_git_url='https://github.com/Kitware/KWIML.git'
+upstream_git_url='https://gitlab.kitware.com/utils/kwiml.git'
upstream_git_branch='master'
snapshot_author_name='KWIML Upstream' | bash |
d_bash_1767 | ---
+++
@@ -1,5 +1,5 @@
#!/usr/bin/env bash
-# Find the camera listed on the command line,
+# Find the Microphone listed on the command line,
# based on output of 'pacmd'
export PULSE_RUNTIME_PATH="/run/user/1000/pulse/"
if [[ $# -eq 0 ]]; then | bash |
d_bash_1768 | ---
+++
@@ -1,4 +1,8 @@
#!/usr/bin/env bash
+# install FUSE
+sudo apt-get update
+sudo apt-get install libfuse-dev
+
# Install conda
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
bash miniconda.sh -b -p $HOME/miniconda
@@ -7,6 +11,7 @@
conda update conda
# Install ... | bash |
d_bash_1769 | ---
+++
@@ -23,6 +23,6 @@
print $4 | command }'
done
-initial_root_token=$(echo $vault_init | grep "Initial Root Token")
+initial_root_token=$(echo $vault_init | grep "Initial Root Token" | awk '{print $4}' )
echo "export VAULT_TOKEN=$initial_root_token" >> ~/.bashrc | bash |
d_bash_1770 | ---
+++
@@ -1,8 +1,5 @@
#!/bin/bash
-curl -L -O http://mcranmer.com/data/bf_test_files.tar.gz
-if [[ "$?" != "0" ]]; then
- curl -L -O https://fornax.phys.unm.edu/lwa/data/bf_test_files.tar.gz
-fi
+curl -L -O https://fornax.phys.unm.edu/lwa/data/bf_test_files.tar.gz
tar xzf bf_test_files.tar.gz
mv for_test_suite d... | bash |
d_bash_1771 | ---
+++
@@ -2,8 +2,7 @@
#Execute this script from local checkout of spring cloud stream
-./mvnw versions:update-property -Dproperty=spring-cloud-stream.version -DnewVersion=[$2] -DallowSnapshots=true -DallowDowngrade=true
-./mvnw versions:update-parent -DparentVersion=[0.0.1,$3] -Pspring -DgenerateBackupPoms=fal... | bash |
d_bash_1772 | ---
+++
@@ -1,7 +1,7 @@
#!/bin/bash
cat >> /etc/apt/sources.list <<EOF
-deb http://download.opensuse.org/repositories/home:/sionescu/Ubuntu_Trusty/ ./
+deb http://download.opensuse.org/repositories/home:/sionescu/Ubuntu_14.04/ ./
EOF
cat >> /etc/apt/preferences <<EOF | bash |
d_bash_1773 | ---
+++
@@ -5,10 +5,12 @@
environ
filehook
fira
+ fontaxes
fontspec
footmisc
gentium-tug
graphics
+ hyphen-english
import
listings
luatexbase
@@ -17,7 +19,6 @@
opensans
pgf
polyglossia
- hyphen-english
ragged2e
tcolorbox
tools
@@... | bash |
d_bash_1774 | ---
+++
@@ -10,6 +10,7 @@
py3status \
dmenu \
tmux \
+ zsh \
python3 \
python3-dev \
# YouCompleteMe | bash |
d_bash_1775 | ---
+++
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
mkdir -p /config/logs/supervisor
chown -R plex: /config | bash |
d_bash_1776 | ---
+++
@@ -28,7 +28,7 @@
git clone https://github.com/VundleVim/Vundle.vim.git ~/.vim/bundle/Vundle.vim
curl https://raw.githubusercontent.com/altercation/vim-colors-solarized/master/colors/solarized.vim
-mkdir ~/vim/colors
+mkdir ~/.vim/colors
mv solarized.vim ~/.vim/colors/
echo "Configuring zsh as default... | bash |
d_bash_1777 | ---
+++
@@ -16,8 +16,8 @@
DEV=`mount | grep $RPATH | cut -d ' ' -f 1`
echo "Using existing RAM disk ${DEV}..."
else
- # Create a ~1GB RAM disk, formatted as HFS+
- DEV=`hdiutil attach -nomount ram://2100000`
+ # Create a ~4GB RAM disk, formatted as HFS+
+ DEV=`hdiutil attach -nomount ram://8400... | bash |
d_bash_1778 | ---
+++
@@ -7,7 +7,7 @@
set -e
SWIFTLINT_PKG_PATH="/tmp/SwiftLint.pkg"
-SWIFTLINT_PKG_URL="https://github.com/realm/SwiftLint/releases/download/0.18.1/SwiftLint.pkg"
+SWIFTLINT_PKG_URL="https://github.com/realm/SwiftLint/releases/download/0.21.0/SwiftLint.pkg"
wget --output-document=$SWIFTLINT_PKG_PATH $SWIFTL... | bash |
d_bash_1779 | ---
+++
@@ -16,12 +16,13 @@
|| { echo "AWS VPN connection required to push image." ; exit ; }
boot2docker ssh <<EOF
+ set -v
# Point docker at the registry.
sudo /etc/init.d/docker stop
sleep 2 # Give docker time to spin down.
sudo sed -i '1s/$/\n\nEXTRA_ARGS="--insecure-registry registry.docker.... | bash |
d_bash_1780 | ---
+++
@@ -16,6 +16,7 @@
./k8s-packages.sh
# Initialise K8S Master
+echo Running: kubeadm init $MASTER_IP_ARG $TOKEN_ARG
sudo kubeadm init $MASTER_IP_ARG $TOKEN_ARG
# Set up kube config | bash |
d_bash_1781 | ---
+++
@@ -10,7 +10,7 @@
cd synaptiko-packages/synaptiko-desktop-status
git pull
- makepkg -sircC
+ makepkg --noconfirm -sircC
cd $DIR
| bash |
d_bash_1782 | ---
+++
@@ -9,9 +9,20 @@
if [ -d ${HOME}/.composer/vendor/bin ]; then
PATH="${HOME}/.composer/vendor/bin:${PATH}"
fi
-# add ./bin to path
+
+python --version 1>/dev/null 2>&1 && {
+ _python_version="$(python --version 2>&1 | cut -d ' ' -f 2 | cut -d '.' -f 1,2)";
+ PATH="~/Library/Python/$_python_version/bin/:... | bash |
d_bash_1783 | ---
+++
@@ -1,4 +1,4 @@
-sudo docker run --name elyoosDatabase -d --net="host" --volume /var/lib/neo4j/data:/data --env=NEO4J_AUTH=none --env=NEO4J_dbms_allowFormatMigration=true --env=NEO4J_dbms_memory_pagecache_size=200M --env=NEO4J_dbms_memory_heap_maxSize=400 neo4j:3.0
+sudo docker run --name elyoosDatabase -d --... | bash |
d_bash_1784 | ---
+++
@@ -11,7 +11,7 @@
echo 'Uploading documentation to the gh-pages branch...'
# Checkout and clean out the docs folder
-git clone -b gh-pages "${REPO_PATH}" --single-branch
+git clone -b gh-pages "${REPO_PATH}" --single-branch gh-pages
cd "${DOCS_PATH}"
git rm -rf .
cd - | bash |
d_bash_1785 | ---
+++
@@ -1,16 +1,15 @@
#!/bin/bash
-# this script is compatible with macOS (the sed command)
echo "Move _static"
-grep -RiIl '_static' _build | xargs sed -i '' -e 's/_static/static/g'
-cp -r _build/html/_static _build/html/static
+grep -RiIl '_static' _build | xargs sed -i 's/_static/static/g'
+mv _build/html/... | bash |
d_bash_1786 | ---
+++
@@ -27,7 +27,12 @@
echo
echo "Building the demo-instace for production"
-npm run build
+npm run build 2>&1 &
+PID="$!"
+while kill -0 $PID 2> /dev/null; do
+ echo "Webpack still running..."
+ sleep 60
+done
echo
echo "Moving the git-directory back and commiting" | bash |
d_bash_1787 | ---
+++
@@ -15,16 +15,18 @@
fi
# upload to itch.io
-UPLOADER_VERSION=`curl https://dl.itch.ovh/butler/linux-amd64/LATEST`
-mkdir -p tools/
-curl -sLo ./tools/butler "https://dl.itch.ovh/butler/linux-amd64/${UPLOADER_VERSION}/butler"
-chmod +x ./tools/butler
-export PATH=$PWD/tools:$PATH
-butler -V
+export TOOLS_D... | bash |
d_bash_1788 | ---
+++
@@ -1,9 +1,10 @@
#!/bin/sh
-
FILENAME=$1
+FILENAME=$(echo ${FILENAME} | sed 's/.xml$//')
TAG=$2
+TAG=${TAG:-${FILENAME}}
XTAG=$3
XTAG=${XTAG:-"_wrapper"}
-xml-to-json ${FILENAME} | jq -c ".${XTAG}.${TAG}[]"
+xml-to-json ${FILENAME}.xml | jq -c ".${XTAG}.${TAG}[]"
| bash |
d_bash_1789 | ---
+++
@@ -26,6 +26,8 @@
sudo rm -rf /var/www/default/
sudo ln -sf /var/www/phpbb/phpBB /var/www/default
+sudo service nginx reload
+
# Set to PHP 7 debug mode and restart php-fpm.
# Adapt this line if you want to set a different deafult php version
/vagrant/newphp 7 debug | bash |
d_bash_1790 | ---
+++
@@ -15,19 +15,19 @@
return 0
;;
-i | --input)
- exec <"$2"
+ export LOADPLAY_IN="$2"
shift 2
;;
-i*)
- exec <"${1#-i}"
+ export LOADPLAY_IN="${1#-i}"
shift
;;
-o | --output)
- exec >"$2"
+ export LOADPLAY_OUT="$2"
shift 2
;;
-o*)
- exec >"${1#-o}"
+ export LOADPLAY_OUT="${1... | bash |
d_bash_1791 | ---
+++
@@ -9,8 +9,14 @@
# and build configuration files.
##
+echo "Fixing up file permissions for development..."
+echo "You can run this via 'docker-compose exec www /var/www/bin/fix-perms.sh'"
set -x
+# Ensure the default files directory is created.
+# This was not automatically done via drush-based site inst... | bash |
d_bash_1792 | ---
+++
@@ -16,9 +16,10 @@
# Update to release version.
git checkout master
lein set-version $new_version
-sed -i '' "s/$current_version/$new_version/g" README.md
+sed -i.bak 's/$current_version/"$new_version"/g' README.md
+git add README.md project.clj
-git commit -am "Release version $new_version."
+git commit... | bash |
d_bash_1793 | ---
+++
@@ -3,8 +3,7 @@
# Create a .apphub credentials file
echo "{\"appHubId\":\"Z6IwqK52JBXrKLI4kpvJ\",\"appHubSecret\":\"$APP_HUB_SECRET\"}" > .apphub
-# while this PR is active: https://github.com/joshuapinter/apphubdeploy/pull/5
-npm install --global orta/apphubdeploy
+npm install --global apphubdeploy
# ... | bash |
d_bash_1794 | ---
+++
@@ -1,3 +1,6 @@
#!/bin/sh
-opennhrpctl purge nbma $REMOTE_ADDR local-nbma $LOCAL_ADDR
+# Purge opennhrp entries only if this was the last ISAKMP phase1
+if [ -z "`racoonctl -ll show-sa isakmp | grep "$LOCAL_ADDR\.[0-9]* * $REMOTE_ADDR\.[0-9]* "`" ]; then
+ opennhrpctl purge nbma $REMOTE_ADDR local-nbma $LO... | bash |
d_bash_1795 | ---
+++
@@ -10,7 +10,7 @@
wget https://openhatch.org/+api/v1/customs/tracker_model/\?format\=yaml\&limit\="$MAX_TRACKERS" -O "$BUG_TRACKER_LIST"
pushd ../oh-bugimporters
-env/bin/scrapy runspider bugimporters/main.py -a input_filename="$BUG_TRACKER_LIST" -s TELNETCONSOLE_ENABLED=False -s WEBSERVICE_ENABLED=False... | bash |
d_bash_1796 | ---
+++
@@ -23,8 +23,6 @@
set -x
-# Relative to the root of the repository. Kokoro will make sure we're in the
-# ${KOKORO_ARTIFACTS_DIR}/github/iree directory (which is equivalent) before
-# invoking this.
-
+# Kokoro checks out the repository here.
+cd ${KOKORO_ARTIFACTS_DIR}/github/iree
./build_tools/bazel_b... | bash |
d_bash_1797 | ---
+++
@@ -7,6 +7,10 @@
echo 'not on CI so not publishing tagged images'
return
fi
+ #if git log -1 --pretty=%B | grep --quiet '[test-only]'; then
+ # echo 'commit message contains [test-only] so stopping here'
+ # return
+ #fi
echo 'on CI so publishing tagged images'
local -r image="$(image... | bash |
d_bash_1798 | ---
+++
@@ -11,3 +11,7 @@
eval "$(rbenv init -)"
alias ctags="`brew --prefix`/bin/ctags"
+
+export NVM_DIR="$HOME/.nvm"
+[ -s "$NVM_DIR/nvm.sh" ] && \. "$NVM_DIR/nvm.sh" # This loads nvm
+[ -s "$NVM_DIR/bash_completion" ] && \. "$NVM_DIR/bash_completion" # This loads nvm bash_completion | bash |
d_bash_1799 | ---
+++
@@ -6,3 +6,5 @@
pip install -r ci-requirements.txt
apt-get install -y curl tar
curl https://raw.githubusercontent.com/apex/apex/master/install.sh | sh
+cd code/buffer/functions/proxy
+make install_deps | bash |
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