repo stringclasses 1k
values | file_url stringlengths 96 373 | file_path stringlengths 11 294 | content stringlengths 0 32.8k | language stringclasses 1
value | license stringclasses 6
values | commit_sha stringclasses 1k
values | retrieved_at stringdate 2026-01-04 14:45:56 2026-01-04 18:30:23 | truncated bool 2
classes |
|---|---|---|---|---|---|---|---|---|
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/PreparedStatementRenderer.java | src/main/java/org/ohdsi/webapi/util/PreparedStatementRenderer.java | package org.ohdsi.webapi.util;
import java.sql.SQLException;
import java.util.HashMap;
import java.util.List;
import java.util.Locale;
import java.util.Map;
import java.util.Objects;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.apache.commons.lang3.Arr... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/ManagedThreadPoolTaskExecutor.java | src/main/java/org/ohdsi/webapi/util/ManagedThreadPoolTaskExecutor.java | package org.ohdsi.webapi.util;
import org.springframework.jmx.export.annotation.ManagedAttribute;
import org.springframework.jmx.export.annotation.ManagedResource;
import org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor;
import java.util.Objects;
import java.util.Optional;
import java.util.concurrent.... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/HttpUtils.java | src/main/java/org/ohdsi/webapi/util/HttpUtils.java | package org.ohdsi.webapi.util;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import java.io.OutputStream;
public class HttpUtils {
public static Response respondBinary(OutputStream stream, String filename) {
return Response
.ok(stream)
.type(MediaType.APPLICATIO... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/PreparedStatementWithParamsCreator.java | src/main/java/org/ohdsi/webapi/util/PreparedStatementWithParamsCreator.java | package org.ohdsi.webapi.util;
import org.springframework.jdbc.core.PreparedStatementCreator;
public interface PreparedStatementWithParamsCreator extends PreparedStatementCreator, ParameterizedSqlProvider {
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/DataSourceDTOParser.java | src/main/java/org/ohdsi/webapi/util/DataSourceDTOParser.java | package org.ohdsi.webapi.util;
import com.odysseusinc.arachne.commons.types.DBMSType;
import com.odysseusinc.arachne.execution_engine_common.api.v1.dto.AuthMethod;
import com.odysseusinc.arachne.execution_engine_common.api.v1.dto.DataSourceUnsecuredDTO;
import java.io.File;
import java.io.FileReader;
import java.io.I... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/StatementCancelException.java | src/main/java/org/ohdsi/webapi/util/StatementCancelException.java | package org.ohdsi.webapi.util;
public class StatementCancelException extends RuntimeException {
@Override
public String getMessage() {
return "statement cannot be set - already cancelled";
}
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/EntityUtils.java | src/main/java/org/ohdsi/webapi/util/EntityUtils.java | package org.ohdsi.webapi.util;
import com.cosium.spring.data.jpa.entity.graph.domain.EntityGraph;
import com.cosium.spring.data.jpa.entity.graph.domain.EntityGraphUtils;
public class EntityUtils {
private EntityUtils() {
}
public static EntityGraph fromAttributePaths(final String... strings) {
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/PreparedStatementRendererCreator.java | src/main/java/org/ohdsi/webapi/util/PreparedStatementRendererCreator.java | package org.ohdsi.webapi.util;
import org.springframework.jdbc.core.PreparedStatementCreator;
import org.springframework.jdbc.core.PreparedStatementSetter;
import org.springframework.jdbc.core.SqlProvider;
import java.sql.Connection;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.SQLExc... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/ParameterizedSqlProvider.java | src/main/java/org/ohdsi/webapi/util/ParameterizedSqlProvider.java | package org.ohdsi.webapi.util;
import org.springframework.jdbc.core.SqlProvider;
import java.util.List;
public interface ParameterizedSqlProvider extends SqlProvider {
List<Object> getOrderedParamsList();
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/SessionUtils.java | src/main/java/org/ohdsi/webapi/util/SessionUtils.java | package org.ohdsi.webapi.util;
import org.ohdsi.sql.SqlTranslate;
/**
*
*/
public final class SessionUtils {
public static final String sessionId() {
return SqlTranslate.generateSessionId();
}
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/SourceUtils.java | src/main/java/org/ohdsi/webapi/util/SourceUtils.java | package org.ohdsi.webapi.util;
import org.apache.commons.lang3.ObjectUtils;
import org.ohdsi.webapi.source.Source;
import org.ohdsi.webapi.source.SourceDaimon;
import static org.ohdsi.webapi.source.SourceDaimon.DaimonType.CDM;
import static org.ohdsi.webapi.source.SourceDaimon.DaimonType.Results;
import static org.oh... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/SecurityUtils.java | src/main/java/org/ohdsi/webapi/util/SecurityUtils.java | package org.ohdsi.webapi.util;
import com.fasterxml.jackson.core.JsonProcessingException;
import java.io.IOException;
import java.sql.SQLException;
import org.springframework.batch.core.repository.JobInstanceAlreadyCompleteException;
import org.springframework.dao.DataAccessException;
import org.springframework.transa... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/ExceptionUtils.java | src/main/java/org/ohdsi/webapi/util/ExceptionUtils.java | package org.ohdsi.webapi.util;
import java.util.Objects;
import javax.ws.rs.NotFoundException;
public class ExceptionUtils {
public static void throwNotFoundExceptionIfNull(Object entity, String message) throws NotFoundException {
if (Objects.isNull(entity)) {
throw new NotFoundException(mes... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/ExpiringMultimap.java | src/main/java/org/ohdsi/webapi/util/ExpiringMultimap.java | /*
*
* Copyright 2018 Observational Health Data Sciences and Informatics
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless r... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/UserUtils.java | src/main/java/org/ohdsi/webapi/util/UserUtils.java | /*
* Copyright 2015 Observational Health Data Sciences and Informatics [OHDSI.org].
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/TempTableCleanupManager.java | src/main/java/org/ohdsi/webapi/util/TempTableCleanupManager.java | package org.ohdsi.webapi.util;
import com.google.common.collect.ImmutableSet;
import com.odysseusinc.arachne.commons.types.DBMSType;
import org.ohdsi.sql.SqlSplit;
import org.ohdsi.sql.SqlTranslate;
import org.ohdsi.webapi.common.generation.GenerationUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
impo... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/ConversionUtils.java | src/main/java/org/ohdsi/webapi/util/ConversionUtils.java | package org.ohdsi.webapi.util;
import org.ohdsi.webapi.model.CommonEntity;
import org.ohdsi.webapi.model.CommonEntityExt;
import org.ohdsi.webapi.service.dto.CommonEntityDTO;
import org.ohdsi.webapi.service.dto.CommonEntityExtDTO;
import org.ohdsi.webapi.tag.dto.TagDTO;
import org.ohdsi.webapi.user.dto.UserDTO;
import... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/PreparedSqlRender.java | src/main/java/org/ohdsi/webapi/util/PreparedSqlRender.java | package org.ohdsi.webapi.util;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.function.Function;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import com.odysseusinc.arachne.commons.types.DBMSType;
import org.apache.commons.lang3.St... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/OrderedPreparedStatementSetter.java | src/main/java/org/ohdsi/webapi/util/OrderedPreparedStatementSetter.java | package org.ohdsi.webapi.util;
import org.springframework.jdbc.core.PreparedStatementSetter;
import java.sql.PreparedStatement;
import java.sql.SQLException;
import java.util.List;
import java.util.Objects;
public class OrderedPreparedStatementSetter implements PreparedStatementSetter {
private final List<Object>... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/StatementCancel.java | src/main/java/org/ohdsi/webapi/util/StatementCancel.java | package org.ohdsi.webapi.util;
import java.sql.SQLException;
import java.sql.Statement;
import java.util.Objects;
public class StatementCancel {
private Statement statement;
private boolean canceled = false;
public synchronized void setStatement(Statement statement) {
if (this.canceled) {
throw ne... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/util/GenericExceptionMapper.java | src/main/java/org/ohdsi/webapi/util/GenericExceptionMapper.java | /*
* Copyright 2015 fdefalco.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/exampleapplication/ExampleApplicationWithJobService.java | src/main/java/org/ohdsi/webapi/exampleapplication/ExampleApplicationWithJobService.java | package org.ohdsi.webapi.exampleapplication;
import org.apache.commons.lang3.RandomStringUtils;
import org.ohdsi.circe.vocabulary.Concept;
import org.ohdsi.webapi.exampleapplication.model.Widget;
import org.ohdsi.webapi.exampleapplication.repository.WidgetRepository;
import org.ohdsi.webapi.job.JobExecutionResource;
i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/exampleapplication/ExampleApplicationConfig.java | src/main/java/org/ohdsi/webapi/exampleapplication/ExampleApplicationConfig.java | package org.ohdsi.webapi.exampleapplication;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.context.annotation.Configuration;
/**
*
*/
@Configuration
public class ExampleApplicationConfig {
private static final Logger log = LoggerFactory.getLogger(ExampleApplicationConf... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/exampleapplication/model/Widget.java | src/main/java/org/ohdsi/webapi/exampleapplication/model/Widget.java | package org.ohdsi.webapi.exampleapplication.model;
import java.io.Serializable;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.GeneratedValue;
import javax.persistence.Id;
import org.hibernate.annotations.GenericGenerator;
import org.hibernate.annotations.Parameter;
/**
*... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/exampleapplication/repository/WidgetRepository.java | src/main/java/org/ohdsi/webapi/exampleapplication/repository/WidgetRepository.java | package org.ohdsi.webapi.exampleapplication.repository;
import org.ohdsi.webapi.exampleapplication.model.Widget;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.Pageable;
import org.springframework.data.repository.CrudRepository;
import org.springframework.stereotype.Repository;
/*... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/PersonService.java | src/main/java/org/ohdsi/webapi/service/PersonService.java | /*
* Copyright 2015 fdefalco.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/UserService.java | src/main/java/org/ohdsi/webapi/service/UserService.java | package org.ohdsi.webapi.service;
import com.fasterxml.jackson.databind.JsonNode;
import com.odysseusinc.logging.event.*;
import org.eclipse.collections.impl.block.factory.Comparators;
import org.ohdsi.webapi.shiro.Entities.PermissionEntity;
import org.ohdsi.webapi.shiro.Entities.RoleEntity;
import org.ohdsi.webapi.sh... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortService.java | src/main/java/org/ohdsi/webapi/service/CohortService.java | package org.ohdsi.webapi.service;
import java.util.List;
import javax.persistence.EntityManager;
import javax.ws.rs.Consumes;
import javax.ws.rs.GET;
import javax.ws.rs.POST;
import javax.ws.rs.Path;
import javax.ws.rs.PathParam;
import javax.ws.rs.Produces;
import javax.ws.rs.core.MediaType;
import org.ohdsi.webapi... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortDefinitionService.java | src/main/java/org/ohdsi/webapi/service/CohortDefinitionService.java | /*
* Copyright 2015 Observational Health Data Sciences and Informatics [OHDSI.org].
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/TherapyPathResultsService.java | src/main/java/org/ohdsi/webapi/service/TherapyPathResultsService.java | /*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distribu... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/VocabularyService.java | src/main/java/org/ohdsi/webapi/service/VocabularyService.java | package org.ohdsi.webapi.service;
import static org.ohdsi.webapi.service.cscompare.ConceptSetCompareService.CONCEPT_SET_COMPARISON_ROW_MAPPER;
import static org.ohdsi.webapi.util.SecurityUtils.whitelist;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
imp... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/JobService.java | src/main/java/org/ohdsi/webapi/service/JobService.java | package org.ohdsi.webapi.service;
import org.ohdsi.webapi.Constants;
import org.ohdsi.webapi.job.JobExecutionResource;
import org.ohdsi.webapi.job.JobInstanceResource;
import org.ohdsi.webapi.job.JobTemplate;
import org.ohdsi.webapi.job.JobUtils;
import org.ohdsi.webapi.util.PreparedStatementRenderer;
import org.sprin... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/HttpClient.java | src/main/java/org/ohdsi/webapi/service/HttpClient.java | package org.ohdsi.webapi.service;
import java.security.KeyManagementException;
import java.security.NoSuchAlgorithmException;
import javax.annotation.PostConstruct;
import javax.net.ssl.SSLContext;
import javax.net.ssl.TrustManager;
import javax.net.ssl.X509TrustManager;
import javax.ws.rs.client.Client;
import javax.... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/FeatureExtractionService.java | src/main/java/org/ohdsi/webapi/service/FeatureExtractionService.java | /*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
package org.ohdsi.webapi.service;
import javax.ws.rs.GET;
import javax.ws.rs.Path;
import javax.ws.rs.Produces;
import javax.ws.rs.Que... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/ActivityService.java | src/main/java/org/ohdsi/webapi/service/ActivityService.java | /*
* Copyright 2015 fdefalco.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/IRAnalysisService.java | src/main/java/org/ohdsi/webapi/service/IRAnalysisService.java | /*
* Copyright 2015 Observational Health Data Sciences and Informatics [OHDSI.org].
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/DDLService.java | src/main/java/org/ohdsi/webapi/service/DDLService.java | /*
*
* Copyright 2017 Observational Health Data Sciences and Informatics
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless r... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/ShinyService.java | src/main/java/org/ohdsi/webapi/service/ShinyService.java | package org.ohdsi.webapi.service;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.apache.commons.lang3.StringUtils;
import org.ohdsi.webapi.shiny.ApplicationBrief;
import org.ohdsi.webapi.shiny.PackagingStrategies;
import org.ohdsi.webapi.shiny.PackagingStrategy;
import org.ohdsi.webap... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/SqlRenderService.java | src/main/java/org/ohdsi/webapi/service/SqlRenderService.java | package org.ohdsi.webapi.service;
import static org.ohdsi.webapi.Constants.DEFAULT_DIALECT;
import static org.ohdsi.webapi.Constants.SqlSchemaPlaceholders.TEMP_DATABASE_SCHEMA_PLACEHOLDER;
import java.util.Collections;
import java.util.Map;
import javax.ws.rs.Consumes;
import javax.ws.rs.POST;
import javax.ws.rs.Path... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortAnalysisService.java | src/main/java/org/ohdsi/webapi/service/CohortAnalysisService.java | package org.ohdsi.webapi.service;
import static org.ohdsi.webapi.util.SecurityUtils.whitelist;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.util.Calendar;
import java.util.List;
import java.util.stream.Collectors;
import javax.ws.rs.Consumes;
import javax.ws.rs.GET;
import javax.ws.rs.POST;
i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortResultsService.java | src/main/java/org/ohdsi/webapi/service/CohortResultsService.java | package org.ohdsi.webapi.service;
import static org.ohdsi.webapi.util.SecurityUtils.whitelist;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.util.*;
import java.util.stream.Collectors;
import javax.annotation.PostConstruct;
import javax.ws.rs.*;
import javax.ws.rs.core.MediaType;
import org.a... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortGenerationService.java | src/main/java/org/ohdsi/webapi/service/CohortGenerationService.java | package org.ohdsi.webapi.service;
import org.ohdsi.webapi.GenerationStatus;
import org.ohdsi.webapi.cohortcharacterization.CreateCohortTableTasklet;
import org.ohdsi.webapi.cohortcharacterization.DropCohortTableListener;
import org.ohdsi.webapi.cohortcharacterization.GenerateLocalCohortTasklet;
import org.ohdsi.webapi... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CohortSampleService.java | src/main/java/org/ohdsi/webapi/service/CohortSampleService.java | package org.ohdsi.webapi.service;
import org.ohdsi.webapi.GenerationStatus;
import org.ohdsi.webapi.cohortdefinition.CohortDefinitionRepository;
import org.ohdsi.webapi.cohortdefinition.CohortGenerationInfo;
import org.ohdsi.webapi.cohortdefinition.CohortGenerationInfoId;
import org.ohdsi.webapi.cohortdefinition.Cohor... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/FeasibilityService.java | src/main/java/org/ohdsi/webapi/service/FeasibilityService.java | /*
* Copyright 2015 Observational Health Data Sciences and Informatics [OHDSI.org].
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/GenerationTaskExceptionHandler.java | src/main/java/org/ohdsi/webapi/service/GenerationTaskExceptionHandler.java | package org.ohdsi.webapi.service;
import org.ohdsi.webapi.util.TempTableCleanupManager;
import org.springframework.batch.repeat.RepeatContext;
import org.springframework.batch.repeat.exception.ExceptionHandler;
public class GenerationTaskExceptionHandler implements ExceptionHandler {
private TempTableCleanupManage... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/EvidenceService.java | src/main/java/org/ohdsi/webapi/service/EvidenceService.java | package org.ohdsi.webapi.service;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.util.Collection;
import java.util.ArrayList;
import java.util.List;
import java.io.IOException;
import java.math.BigDecimal;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.util.Arrays;
import java.... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/ConceptSetService.java | src/main/java/org/ohdsi/webapi/service/ConceptSetService.java | /*
* Copyright 2015 fdefalco.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | true |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/CDMResultsService.java | src/main/java/org/ohdsi/webapi/service/CDMResultsService.java | package org.ohdsi.webapi.service;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.databind.node.ArrayNode;
import org.apache.commons.lang3.StringUtils;
import org.ohdsi.webapi.Constants;
import org.ohdsi.webapi.achilles.aspect.AchillesCac... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/AbstractDaoService.java | src/main/java/org/ohdsi/webapi/service/AbstractDaoService.java | package org.ohdsi.webapi.service;
import com.odysseusinc.arachne.commons.types.DBMSType;
import com.odysseusinc.arachne.execution_engine_common.api.v1.dto.DataSourceUnsecuredDTO;
import com.odysseusinc.datasourcemanager.krblogin.KerberosService;
import com.odysseusinc.datasourcemanager.krblogin.KrbConfig;
import com.o... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/IRAnalysisResource.java | src/main/java/org/ohdsi/webapi/service/IRAnalysisResource.java | package org.ohdsi.webapi.service;
import org.ohdsi.webapi.check.CheckResult;
import org.ohdsi.webapi.common.generation.GenerateSqlResult;
import org.ohdsi.webapi.ircalc.AnalysisReport;
import org.ohdsi.webapi.ircalc.dto.IRVersionFullDTO;
import org.ohdsi.webapi.job.JobExecutionResource;
import org.ohdsi.webapi.service... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/CopyAnnotationsRequest.java | src/main/java/org/ohdsi/webapi/service/dto/CopyAnnotationsRequest.java | package org.ohdsi.webapi.service.dto;
public class CopyAnnotationsRequest {
private int sourceConceptSetId;
private int targetConceptSetId;
public int getSourceConceptSetId() {
return sourceConceptSetId;
}
public int getTargetConceptSetId() {
return targetConceptSetId;
}
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/AnalysisInfoDTO.java | src/main/java/org/ohdsi/webapi/service/dto/AnalysisInfoDTO.java | package org.ohdsi.webapi.service.dto;
import org.ohdsi.webapi.ircalc.AnalysisReport;
import org.ohdsi.webapi.ircalc.ExecutionInfo;
import java.util.ArrayList;
import java.util.List;
public class AnalysisInfoDTO {
private ExecutionInfo executionInfo;
private List<AnalysisReport.Summary> summaryList = new Arr... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/ConceptSetDTO.java | src/main/java/org/ohdsi/webapi/service/dto/ConceptSetDTO.java | package org.ohdsi.webapi.service.dto;
public class ConceptSetDTO extends CommonEntityExtDTO {
private Integer id;
private String name;
private String description;
public Integer getId() {
return id;
}
public void setId(Integer id) {
this.id = id;
}
public String getName() {
return name;... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/IRAnalysisDTO.java | src/main/java/org/ohdsi/webapi/service/dto/IRAnalysisDTO.java | package org.ohdsi.webapi.service.dto;
public class IRAnalysisDTO extends IRAnalysisShortDTO {
private String expression;
public String getExpression() {
return expression;
}
public void setExpression(String expression) {
this.expression = expression;
}
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/PatientLevelPredictionAnalysisDTO.java | src/main/java/org/ohdsi/webapi/service/dto/PatientLevelPredictionAnalysisDTO.java | package org.ohdsi.webapi.service.dto;
public class PatientLevelPredictionAnalysisDTO extends CommonEntityDTO {
private Integer analysisId;
private String name;
private Integer treatmentId;
private Integer outcomeId;
private String modelType;
private int timeAtRiskStart;
private int timeAtRiskEnd;
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/ComparativeCohortAnalysisDTO.java | src/main/java/org/ohdsi/webapi/service/dto/ComparativeCohortAnalysisDTO.java | package org.ohdsi.webapi.service.dto;
public class ComparativeCohortAnalysisDTO extends CommonEntityDTO {
private Integer analysisId;
private String name;
private Integer treatmentId;
private Integer comparatorId;
private Integer outcomeId;
private String modelType;
private int timeAtRiskStart;
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/SaveConceptSetAnnotationsRequest.java | src/main/java/org/ohdsi/webapi/service/dto/SaveConceptSetAnnotationsRequest.java | package org.ohdsi.webapi.service.dto;
import java.util.List;
public class SaveConceptSetAnnotationsRequest {
private List<AnnotationDTO> newAnnotation;
private List<AnnotationDTO> removeAnnotation;
public List<AnnotationDTO> getNewAnnotation() {
return newAnnotation;
}
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/CommonEntityExtDTO.java | src/main/java/org/ohdsi/webapi/service/dto/CommonEntityExtDTO.java | package org.ohdsi.webapi.service.dto;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import org.ohdsi.analysis.CohortMetadata;
import org.ohdsi.webapi.CommonDTO;
import org.ohdsi.webapi.cohortdefinition.CohortMetadataExt;
import org.ohdsi.webapi.tag.dto.TagDT... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/AnnotationDTO.java | src/main/java/org/ohdsi/webapi/service/dto/AnnotationDTO.java | package org.ohdsi.webapi.service.dto;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@JsonIgnoreProperties(ignoreUnknown = true)
public class AnnotationDTO {
private Integer id;
private String createdBy;
private String createdDate;
private String vocabularyVersion;
private Integer ... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/IRAnalysisShortDTO.java | src/main/java/org/ohdsi/webapi/service/dto/IRAnalysisShortDTO.java | package org.ohdsi.webapi.service.dto;
import org.ohdsi.webapi.model.CommonEntityExt;
public class IRAnalysisShortDTO extends CommonEntityExtDTO {
private Integer id;
private String name;
private String description;
public Integer getId() {
return id;
}
public void setId(Integer id) ... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/CommonEntityDTO.java | src/main/java/org/ohdsi/webapi/service/dto/CommonEntityDTO.java | package org.ohdsi.webapi.service.dto;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.io.Serializable;
import org.ohdsi.webapi.user.dto.UserDTO;
import java.util.Date;
import org.ohdsi.webapi.CommonDTO;
@JsonInclude(JsonInclude.Include.NON_NULL)
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/AnnotationDetailsDTO.java | src/main/java/org/ohdsi/webapi/service/dto/AnnotationDetailsDTO.java | package org.ohdsi.webapi.service.dto;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@JsonIgnoreProperties(ignoreUnknown = true)
public class AnnotationDetailsDTO {
private Integer id;
private String searchData;
private Integer conceptId;
public Integer getId() {
return id;
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/dto/CheckResultDTO.java | src/main/java/org/ohdsi/webapi/service/dto/CheckResultDTO.java | package org.ohdsi.webapi.service.dto;
import org.ohdsi.circe.check.Warning;
import java.util.List;
public class CheckResultDTO {
private List<Warning> warnings;
public CheckResultDTO(List<Warning> warnings) {
this.warnings = warnings;
}
public List<Warning> getWarnings() {
return w... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/BaseCommonDTOToEntityConverter.java | src/main/java/org/ohdsi/webapi/service/converters/BaseCommonDTOToEntityConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.converter.BaseConversionServiceAwareConverter;
import org.ohdsi.webapi.model.CommonEntity;
import org.ohdsi.webapi.service.dto.CommonEntityDTO;
public abstract class BaseCommonDTOToEntityConverter<S extends CommonEntityDTO, T extends CommonEntity<? ... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/IncidenceRateAnalysisToIRAnalysisDTOConverter.java | src/main/java/org/ohdsi/webapi/service/converters/IncidenceRateAnalysisToIRAnalysisDTOConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.ircalc.IncidenceRateAnalysis;
import org.ohdsi.webapi.service.dto.IRAnalysisDTO;
import org.springframework.stereotype.Component;
@Component
public class IncidenceRateAnalysisToIRAnalysisDTOConverter extends IncidenceRateAnalysisToIRAnalysisShortDTO... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/BaseCommonEntityToDTOConverter.java | src/main/java/org/ohdsi/webapi/service/converters/BaseCommonEntityToDTOConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.converter.BaseConversionServiceAwareConverter;
import org.ohdsi.webapi.model.CommonEntity;
import org.ohdsi.webapi.service.dto.CommonEntityDTO;
import static org.ohdsi.webapi.util.ConversionUtils.convertMetadata;
public abstract class BaseCommonEnt... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/ConceptSetToConceptSetDTOConverter.java | src/main/java/org/ohdsi/webapi/service/converters/ConceptSetToConceptSetDTOConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.conceptset.ConceptSet;
import org.ohdsi.webapi.service.dto.ConceptSetDTO;
import org.springframework.stereotype.Component;
@Component
public class ConceptSetToConceptSetDTOConverter extends BaseCommonEntityExtToDTOExtConverter<ConceptSet, ConceptSet... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/BaseCommonDTOExtToEntityExtConverter.java | src/main/java/org/ohdsi/webapi/service/converters/BaseCommonDTOExtToEntityExtConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.converter.BaseConversionServiceAwareConverter;
import org.ohdsi.webapi.model.CommonEntityExt;
import org.ohdsi.webapi.service.dto.CommonEntityExtDTO;
public abstract class BaseCommonDTOExtToEntityExtConverter<S extends CommonEntityExtDTO, T extends ... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/SourceRequestToSourceConverter.java | src/main/java/org/ohdsi/webapi/service/converters/SourceRequestToSourceConverter.java | package org.ohdsi.webapi.service.converters;
import com.odysseusinc.arachne.execution_engine_common.api.v1.dto.KerberosAuthMechanism;
import org.ohdsi.webapi.source.Source;
import org.ohdsi.webapi.source.SourceRequest;
import org.springframework.core.convert.converter.Converter;
import org.springframework.core.convert... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/IncidenceRateAnalysisToIRAnalysisShortDTOConverter.java | src/main/java/org/ohdsi/webapi/service/converters/IncidenceRateAnalysisToIRAnalysisShortDTOConverter.java | package org.ohdsi.webapi.service.converters;
import org.apache.commons.lang3.StringUtils;
import org.ohdsi.webapi.ircalc.IncidenceRateAnalysis;
import org.ohdsi.webapi.service.dto.IRAnalysisShortDTO;
import org.springframework.stereotype.Component;
@Component
public class IncidenceRateAnalysisToIRAnalysisShortDTOConv... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/BaseCommonEntityExtToDTOExtConverter.java | src/main/java/org/ohdsi/webapi/service/converters/BaseCommonEntityExtToDTOExtConverter.java | package org.ohdsi.webapi.service.converters;
import org.ohdsi.webapi.converter.BaseConversionServiceAwareConverter;
import org.ohdsi.webapi.model.CommonEntityExt;
import org.ohdsi.webapi.service.dto.CommonEntityExtDTO;
import static org.ohdsi.webapi.util.ConversionUtils.convertMetadataExt;
public abstract class Base... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/converters/ConceptSetDTOToConceptSetConverter.java | src/main/java/org/ohdsi/webapi/service/converters/ConceptSetDTOToConceptSetConverter.java | package org.ohdsi.webapi.service.converters;
import org.apache.commons.lang3.StringUtils;
import org.ohdsi.webapi.conceptset.ConceptSet;
import org.ohdsi.webapi.service.dto.ConceptSetDTO;
import org.springframework.core.convert.converter.Converter;
import org.springframework.core.convert.support.GenericConversionServi... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/annotations/SearchDataTransformer.java | src/main/java/org/ohdsi/webapi/service/annotations/SearchDataTransformer.java | package org.ohdsi.webapi.service.annotations;
import org.apache.commons.lang3.StringUtils;
import org.json.JSONArray;
import org.json.JSONObject;
import org.springframework.stereotype.Service;
import java.util.Optional;
import java.util.stream.Collectors;
import java.util.stream.IntStream;
@Service
public class Sear... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/cscompare/ExpressionType.java | src/main/java/org/ohdsi/webapi/service/cscompare/ExpressionType.java | package org.ohdsi.webapi.service.cscompare;
public enum ExpressionType {
CONCEPT_NAME_CODE_AND_VOCABULARY_ID_ONLY,
FULL
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/cscompare/ExpressionFileUtils.java | src/main/java/org/ohdsi/webapi/service/cscompare/ExpressionFileUtils.java | package org.ohdsi.webapi.service.cscompare;
import org.ohdsi.circe.vocabulary.Concept;
import org.ohdsi.circe.vocabulary.ConceptSetExpression;
import org.ohdsi.webapi.conceptset.ConceptSetComparison;
import java.util.*;
import java.util.stream.Collector;
import java.util.stream.Collectors;
public class ExpressionFil... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/cscompare/CompareArbitraryDto.java | src/main/java/org/ohdsi/webapi/service/cscompare/CompareArbitraryDto.java | package org.ohdsi.webapi.service.cscompare;
import org.ohdsi.circe.vocabulary.ConceptSetExpression;
public class CompareArbitraryDto {
public ExpressionType[] types;
public ConceptSetExpression[] compareTargets;
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/cscompare/ConceptSetCompareService.java | src/main/java/org/ohdsi/webapi/service/cscompare/ConceptSetCompareService.java | package org.ohdsi.webapi.service.cscompare;
import org.apache.commons.lang3.StringUtils;
import org.ohdsi.circe.helper.ResourceHelper;
import org.ohdsi.circe.vocabulary.ConceptSetExpression;
import org.ohdsi.circe.vocabulary.ConceptSetExpressionQueryBuilder;
import org.ohdsi.sql.SqlRender;
import org.ohdsi.sql.SqlTran... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/vocabulary/ConceptSetStrategy.java | src/main/java/org/ohdsi/webapi/service/vocabulary/ConceptSetStrategy.java | package org.ohdsi.webapi.service.vocabulary;
import org.ohdsi.circe.vocabulary.ConceptSetExpression;
import org.ohdsi.circe.vocabulary.ConceptSetExpressionQueryBuilder;
import org.ohdsi.sql.SqlRender;
import org.ohdsi.webapi.source.Source;
import org.ohdsi.webapi.source.SourceDaimon;
import org.ohdsi.webapi.util.Prepa... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/service/vocabulary/StatementPrepareStrategy.java | src/main/java/org/ohdsi/webapi/service/vocabulary/StatementPrepareStrategy.java | package org.ohdsi.webapi.service.vocabulary;
import org.ohdsi.webapi.source.Source;
import org.ohdsi.webapi.util.PreparedStatementRenderer;
import java.util.function.Function;
public interface StatementPrepareStrategy {
PreparedStatementRenderer prepareStatement(Source source, Function<String, String> queryModifi... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/cohort/CohortEntity.java | src/main/java/org/ohdsi/webapi/cohort/CohortEntity.java | package org.ohdsi.webapi.cohort;
import java.io.Serializable;
import java.util.Date;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Id;
import javax.persistence.IdClass;
import javax.persistence.Table;
@Entity(name = "CohortEntity")
@Table(name = "cohort")
@IdClass(CohortE... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/cohort/CohortRepository.java | src/main/java/org/ohdsi/webapi/cohort/CohortRepository.java | package org.ohdsi.webapi.cohort;
import java.util.List;
import org.springframework.data.jpa.repository.Query;
import org.springframework.data.repository.CrudRepository;
public interface CohortRepository extends CrudRepository<CohortEntity, Long> {
@Query("from CohortEntity where cohort_definition_id = ?1")
publi... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/FileWriter.java | src/main/java/org/ohdsi/webapi/shiny/FileWriter.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.stereotype.Component;
import javax.ws.rs.InternalServerErrorException;
import java.io.IOException;
imp... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/CohortCharacterizationShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/CohortCharacterizationShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Iterables;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.apache.commons.csv.CSVFormat;
import org.apache.commons.csv.CSVPrinter;
import org.apache.commons.csv.QuoteMod... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/PackagingStrategy.java | src/main/java/org/ohdsi/webapi/shiny/PackagingStrategy.java | package org.ohdsi.webapi.shiny;
import java.nio.file.Path;
import java.util.function.Function;
public interface PackagingStrategy extends Function<Path, Path> {
}
| java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/CohortCountsShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/CohortCountsShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.ohdsi.circe.cohortdefinition.CohortExpression;
import org.ohdsi.webapi.cohortdefinition.CohortDefinition;
import org.ohdsi.webapi.cohortdefinition.CohortD... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyController.java | src/main/java/org/ohdsi/webapi/shiny/ShinyController.java | package org.ohdsi.webapi.shiny;
import org.glassfish.jersey.media.multipart.ContentDisposition;
import org.ohdsi.webapi.service.ShinyService;
import org.ohdsi.webapi.shiro.annotations.DataSourceAccess;
import org.ohdsi.webapi.shiro.annotations.SourceKey;
import org.springframework.beans.factory.annotation.Autowired;
i... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ApplicationBrief.java | src/main/java/org/ohdsi/webapi/shiny/ApplicationBrief.java | package org.ohdsi.webapi.shiny;
public class ApplicationBrief {
private String name;
private String title;
private String description;
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getTitle() {
re... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ManifestUtils.java | src/main/java/org/ohdsi/webapi/shiny/ManifestUtils.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.databind.node.ObjectNode;
import org.apache.commons.codec.digest.DigestUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframew... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyPublishedRepository.java | src/main/java/org/ohdsi/webapi/shiny/ShinyPublishedRepository.java | package org.ohdsi.webapi.shiny;
import org.springframework.data.jpa.repository.JpaRepository;
import org.springframework.stereotype.Repository;
import java.util.Optional;
@Repository
public interface ShinyPublishedRepository extends JpaRepository<ShinyPublishedEntity, Long> {
Optional<ShinyPublishedEntity> findB... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/ShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
public interface ShinyPackagingService {
CommonAnalysisType getType();
TemporaryFile packageApp(Integer generationId, String sourceKey, PackagingStrategy packaging);
ApplicationBrief getBrief(Integer ge... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/CohortCharacterizationAnalysisHeaderToFieldMapper.java | src/main/java/org/ohdsi/webapi/shiny/CohortCharacterizationAnalysisHeaderToFieldMapper.java | package org.ohdsi.webapi.shiny;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.core.io.Resource;
import org.springframework.stereotype.Service;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.Inpu... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyConfiguration.java | src/main/java/org/ohdsi/webapi/shiny/ShinyConfiguration.java | package org.ohdsi.webapi.shiny;
import org.ohdsi.webapi.service.ShinyService;
import org.ohdsi.webapi.shiny.posit.PositConnectProperties;
import org.springframework.boot.autoconfigure.condition.ConditionalOnBean;
import org.springframework.boot.context.properties.EnableConfigurationProperties;
import org.springframewo... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyConstants.java | src/main/java/org/ohdsi/webapi/shiny/ShinyConstants.java | package org.ohdsi.webapi.shiny;
public enum ShinyConstants {
VALUE_NOT_AVAILABLE("N/A"),
DATE_TIME_FORMAT("yyyy-MM-dd HH:mm:ss"),
PROPERTY_NAME_REPO_LINK("repo_link"),
PROPERTY_NAME_COHORT_LINK("cohort_link"),
PROPERTY_NAME_COHORT_NAME("cohort_name"),
PROPERTY_NAME_ATLAS_URL("atlas_url"),
P... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ShinyPublishedEntity.java | src/main/java/org/ohdsi/webapi/shiny/ShinyPublishedEntity.java | package org.ohdsi.webapi.shiny;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.hibernate.annotations.GenericGenerator;
import org.hibernate.annotations.Parameter;
import org.ohdsi.webapi.model.CommonEntity;
import javax.persistence.Column;
import javax.persistence.Entity;
import java... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/CommonShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/CommonShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import com.odysseusinc.arachne.execution_engine_common.util.CommonFileUtils;
import org.ohdsi.webapi.report.CDMDashbo... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/ConflictPositConnectException.java | src/main/java/org/ohdsi/webapi/shiny/ConflictPositConnectException.java | package org.ohdsi.webapi.shiny;
import org.ohdsi.webapi.shiny.posit.PositConnectClientException;
public class ConflictPositConnectException extends PositConnectClientException {
public ConflictPositConnectException(String message) {
super(message);
}
public ConflictPositConnectException(String me... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/IncidenceRatesShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/IncidenceRatesShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Iterables;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.apache.commons.collections4.CollectionUtils;
import... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/CohortPathwaysShinyPackagingService.java | src/main/java/org/ohdsi/webapi/shiny/CohortPathwaysShinyPackagingService.java | package org.ohdsi.webapi.shiny;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisType;
import org.ohdsi.webapi.pathway.PathwayService;
import org.ohdsi.webapi.pathway.domain.PathwayAnalysisGenerationEntity;
import org.ohdsi.webapi.pathway.dto.PathwayAn... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/TemporaryFile.java | src/main/java/org/ohdsi/webapi/shiny/TemporaryFile.java | package org.ohdsi.webapi.shiny;
import java.nio.file.Path;
public class TemporaryFile {
private final String filename;
private final Path file;
public TemporaryFile(String filename, Path file) {
this.filename = filename;
this.file = file;
}
public String getFilename() {
... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
OHDSI/WebAPI | https://github.com/OHDSI/WebAPI/blob/b22d7bf02d98c0cf78c46801877368d6ecad2245/src/main/java/org/ohdsi/webapi/shiny/PackagingStrategies.java | src/main/java/org/ohdsi/webapi/shiny/PackagingStrategies.java | package org.ohdsi.webapi.shiny;
import com.odysseusinc.arachne.commons.utils.ZipUtils;
import org.apache.commons.compress.archivers.ArchiveEntry;
import org.apache.commons.compress.archivers.ArchiveOutputStream;
import org.apache.commons.compress.archivers.tar.TarArchiveOutputStream;
import org.apache.commons.compress... | java | Apache-2.0 | b22d7bf02d98c0cf78c46801877368d6ecad2245 | 2026-01-05T02:37:20.475642Z | false |
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